AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70111

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70111.t1 MTR_3g086150 71.622 222 15 1 54 227 1003 1224 3.52e-86 287
MS.gene70111.t1 MTR_3g086150 71.622 222 15 1 54 227 1003 1224 4.16e-86 287
MS.gene70111.t1 MTR_1g070015 72.414 145 15 1 293 412 77 221 9.89e-62 199
MS.gene70111.t1 MTR_1g070000 70.000 150 19 2 292 415 76 225 6.80e-61 197
MS.gene70111.t1 MTR_1g069985 56.684 187 54 3 251 411 27 212 5.68e-58 189
MS.gene70111.t1 MTR_1g070020 66.667 138 20 2 293 404 63 200 8.76e-50 168
MS.gene70111.t1 MTR_1g070035 51.381 181 56 5 266 415 42 221 1.56e-40 144
MS.gene70111.t1 MTR_1g070045 62.037 108 14 2 289 369 53 160 8.68e-32 119
MS.gene70111.t1 MTR_4g134870 52.294 109 22 2 316 415 331 418 2.03e-23 102
MS.gene70111.t1 MTR_4g054360 37.500 144 52 3 300 405 124 267 9.40e-22 94.7
MS.gene70111.t1 MTR_4g054740 36.879 141 53 2 297 401 94 234 1.58e-21 93.2
MS.gene70111.t1 MTR_4g054860 37.931 145 48 3 302 405 133 276 9.56e-21 92.0
MS.gene70111.t1 MTR_2g015040 46.237 93 44 1 262 348 19 111 5.29e-20 86.7
MS.gene70111.t1 MTR_1g074370 44.928 138 49 1 296 406 69 206 1.59e-19 87.0
MS.gene70111.t1 MTR_1g069940 45.270 148 43 3 297 408 92 237 3.82e-19 86.7
MS.gene70111.t1 MTR_4g088005 54.545 66 25 1 296 356 53 118 7.54e-19 82.4
MS.gene70111.t1 MTR_1g070070 60.317 63 20 1 300 357 21 83 3.88e-18 81.3
MS.gene70111.t1 MTR_8g006815 71.429 49 14 0 300 348 96 144 6.77e-18 82.0
MS.gene70111.t1 MTR_1g090290 75.510 49 12 0 300 348 113 161 1.03e-17 81.3
MS.gene70111.t1 MTR_7g096700 55.714 70 26 1 290 354 10 79 1.40e-17 79.3
MS.gene70111.t1 MTR_2g015050 58.730 63 24 1 286 348 122 182 2.02e-17 82.4
MS.gene70111.t1 MTR_7g021010 58.462 65 25 2 296 360 47 109 2.96e-17 79.7
MS.gene70111.t1 MTR_1g069945 44.138 145 43 3 297 405 98 240 3.38e-17 81.3
MS.gene70111.t1 MTR_1g074310 53.968 63 29 0 286 348 7 69 3.56e-17 78.6
MS.gene70111.t1 MTR_8g006840 68.000 50 16 0 299 348 124 173 4.95e-17 79.7
MS.gene70111.t1 MTR_4g100380 69.388 49 15 0 300 348 145 193 1.00e-16 80.1
MS.gene70111.t1 MTR_1g074230 64.151 53 19 0 300 352 19 71 1.09e-16 77.0
MS.gene70111.t1 MTR_7g020980 56.923 65 26 2 296 360 47 109 2.90e-16 76.6
MS.gene70111.t1 MTR_7g021010 55.714 70 29 2 291 360 3 70 3.09e-16 75.5
MS.gene70111.t1 MTR_4g100450 64.151 53 19 0 296 348 150 202 5.77e-16 78.6
MS.gene70111.t1 MTR_7g096750 55.072 69 30 1 293 361 13 80 5.94e-16 74.7
MS.gene70111.t1 MTR_1g048610 67.347 49 16 0 300 348 89 137 6.76e-16 77.0
MS.gene70111.t1 MTR_4g100420 58.929 56 23 0 293 348 150 205 6.77e-16 78.6
MS.gene70111.t1 MTR_7g081815 67.347 49 16 0 300 348 61 109 8.33e-16 76.3
MS.gene70111.t1 MTR_1g043350 45.000 140 44 4 290 401 72 206 9.47e-16 76.3
MS.gene70111.t1 MTR_7g081805 67.347 49 16 0 300 348 61 109 1.00e-15 75.9
MS.gene70111.t1 MTR_7g096780 44.118 136 45 4 296 401 81 215 1.15e-15 76.3
MS.gene70111.t1 MTR_7g096830 40.541 148 48 4 296 405 94 239 1.16e-15 76.6
MS.gene70111.t1 MTR_8g006825 52.308 65 26 1 300 359 96 160 2.57e-15 74.7
MS.gene70111.t1 MTR_2g014300 64.815 54 18 1 295 348 10 62 2.62e-15 73.9
MS.gene70111.t1 MTR_7g081795 63.265 49 18 0 300 348 60 108 6.19e-15 73.6
MS.gene70111.t1 MTR_1g074250 53.731 67 29 2 286 351 5 70 1.38e-14 70.9
MS.gene70111.t1 MTR_4g119270 41.964 112 52 5 237 348 2 100 1.39e-14 74.7
MS.gene70111.t1 MTR_3g053690 42.991 107 43 5 300 389 27 132 2.58e-14 72.4
MS.gene70111.t1 MTR_7g084370 65.306 49 16 1 300 348 42 89 1.03e-13 71.6
MS.gene70111.t1 MTR_8g069360 67.347 49 15 1 300 348 44 91 1.21e-13 72.8
MS.gene70111.t1 MTR_8g092460 53.030 66 30 1 283 348 128 192 1.47e-13 71.6
MS.gene70111.t1 MTR_1g040430 71.429 42 12 0 307 348 118 159 2.23e-13 68.9
MS.gene70111.t1 MTR_5g032820 41.748 103 48 2 246 348 3 93 2.52e-13 71.2
MS.gene70111.t1 MTR_2g078680 58.929 56 22 1 293 348 24 78 3.67e-13 68.6
MS.gene70111.t1 MTR_4g111915 54.386 57 24 2 292 348 46 100 4.45e-13 66.6
MS.gene70111.t1 MTR_4g086160 65.306 49 16 1 300 348 96 143 4.64e-13 68.9
MS.gene70111.t1 MTR_5g085100 63.265 49 17 1 300 348 46 93 5.45e-13 69.3
MS.gene70111.t1 MTR_5g009620 63.265 49 17 1 300 348 112 159 6.06e-13 69.7
MS.gene70111.t1 MTR_2g438180 53.226 62 25 1 291 348 1 62 7.03e-13 65.9
MS.gene70111.t1 MTR_4g086220 65.306 49 16 1 300 348 96 143 7.93e-13 68.2
MS.gene70111.t1 MTR_4g086165 65.306 49 16 1 300 348 82 129 8.54e-13 67.4
MS.gene70111.t1 MTR_5g085070 63.265 49 17 1 300 348 51 98 9.36e-13 68.9
MS.gene70111.t1 MTR_8g085960 52.727 55 25 1 294 348 19 72 9.96e-13 67.8
MS.gene70111.t1 MTR_2g019750 57.143 49 20 1 300 348 50 97 1.22e-12 68.6
MS.gene70111.t1 MTR_4g112490 54.386 57 24 2 292 348 46 100 1.48e-12 66.6
MS.gene70111.t1 MTR_4g086190 65.306 49 16 1 300 348 96 143 1.48e-12 67.4
MS.gene70111.t1 MTR_4g078710 63.265 49 17 1 300 348 28 75 1.59e-12 67.0
MS.gene70111.t1 MTR_2g014340 53.226 62 28 1 287 348 6 66 2.05e-12 66.2
MS.gene70111.t1 MTR_2g435590 46.479 71 37 1 278 348 74 143 3.65e-12 66.6
MS.gene70111.t1 MTR_1g087920 58.491 53 21 1 296 348 73 124 4.02e-12 67.0
MS.gene70111.t1 MTR_6g029180 51.562 64 26 2 289 348 18 80 4.45e-12 67.0
MS.gene70111.t1 MTR_2g105380 58.491 53 21 1 296 348 113 164 6.16e-12 67.0
MS.gene70111.t1 MTR_2g016730 46.032 63 33 1 286 348 9 70 7.45e-12 66.6
MS.gene70111.t1 MTR_6g012970 57.143 49 20 1 300 348 38 85 7.95e-12 67.0
MS.gene70111.t1 MTR_7g011630 57.143 49 20 1 300 348 42 89 8.06e-12 67.0
MS.gene70111.t1 MTR_1g069960 67.347 49 16 0 300 348 27 75 1.05e-11 63.2
MS.gene70111.t1 MTR_7g096810 61.111 54 21 0 295 348 8 61 5.76e-11 60.5
MS.gene70111.t1 MTR_0939s0010 54.717 53 23 1 295 347 60 111 8.51e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70111.t1 AT3G23240 44.526 137 51 1 299 410 81 217 1.99e-26 106
MS.gene70111.t1 AT2G31230 69.091 55 17 0 294 348 80 134 1.83e-19 87.4
MS.gene70111.t1 AT5G43410 67.925 53 17 0 296 348 11 63 2.32e-18 81.3
MS.gene70111.t1 AT4G17500 71.429 49 14 0 300 348 148 196 4.24e-17 81.3
MS.gene70111.t1 AT5G47220 71.429 49 14 0 300 348 117 165 5.84e-17 80.5
MS.gene70111.t1 AT5G51190 60.714 56 22 0 293 348 65 120 1.29e-16 79.0
MS.gene70111.t1 AT5G47230 64.151 53 19 0 296 348 152 204 1.65e-16 80.1
MS.gene70111.t1 AT2G47520 40.800 125 67 5 296 417 46 166 3.09e-16 76.6
MS.gene70111.t1 AT4G18450 69.388 49 15 0 300 348 110 158 4.35e-16 79.0
MS.gene70111.t1 AT2G44840 65.306 49 17 0 300 348 92 140 5.05e-16 77.4
MS.gene70111.t1 AT4G17490 64.151 53 19 0 296 348 133 185 1.32e-15 77.0
MS.gene70111.t1 AT5G61600 63.265 49 18 0 300 348 88 136 1.98e-15 75.9
MS.gene70111.t1 AT2G33710 67.347 49 15 1 300 348 70 117 5.43e-15 74.3
MS.gene70111.t1 AT5G07580 65.306 49 17 0 300 348 110 158 6.73e-15 73.6
MS.gene70111.t1 AT2G33710 67.347 49 15 1 300 348 70 117 6.85e-15 74.3
MS.gene70111.t1 AT5G18560 54.098 61 27 1 288 348 43 102 1.27e-14 75.1
MS.gene70111.t1 AT5G13910 67.347 49 15 1 300 348 20 67 1.36e-14 72.8
MS.gene70111.t1 AT3G23230 57.407 54 23 0 295 348 15 68 1.63e-14 70.9
MS.gene70111.t1 AT1G28160 65.306 49 16 1 300 348 39 86 3.08e-14 72.4
MS.gene70111.t1 AT1G28360 45.977 87 41 2 300 381 12 97 6.00e-14 70.5
MS.gene70111.t1 AT3G16770 62.264 53 19 1 296 348 75 126 6.93e-14 71.6
MS.gene70111.t1 AT5G13330 55.738 61 25 2 300 360 39 97 1.42e-13 70.1
MS.gene70111.t1 AT5G44210 56.897 58 24 1 291 348 24 80 3.17e-13 68.6
MS.gene70111.t1 AT4G27950 61.111 54 19 2 295 348 114 165 3.58e-13 70.5
MS.gene70111.t1 AT1G24460 30.288 208 97 3 54 213 942 1149 3.88e-13 72.0
MS.gene70111.t1 AT1G24460 30.288 208 97 3 54 213 942 1149 3.94e-13 72.0
MS.gene70111.t1 AT5G53290 53.333 60 27 1 289 348 114 172 4.27e-13 70.5
MS.gene70111.t1 AT4G11140 63.265 49 17 1 300 348 87 134 4.63e-13 69.7
MS.gene70111.t1 AT3G15210 51.389 72 32 2 279 348 2 72 5.06e-13 68.6
MS.gene70111.t1 AT5G61890 55.738 61 25 2 300 360 90 148 1.01e-12 68.2
MS.gene70111.t1 AT5G19790 55.769 52 22 1 297 348 19 69 1.08e-12 68.2
MS.gene70111.t1 AT1G06160 76.000 50 12 0 299 348 81 130 1.08e-12 68.2
MS.gene70111.t1 AT1G28370 63.265 49 17 1 300 348 58 105 1.49e-12 66.6
MS.gene70111.t1 AT1G28370 63.265 49 17 1 300 348 20 67 1.56e-12 65.9
MS.gene70111.t1 AT1G22190 46.053 76 40 1 300 375 83 157 1.65e-12 67.8
MS.gene70111.t1 AT1G12890 57.692 52 21 1 296 347 17 67 1.77e-12 67.0
MS.gene70111.t1 AT3G20310 65.306 49 16 1 300 348 27 74 2.88e-12 66.6
MS.gene70111.t1 AT1G22985 53.448 58 25 1 292 347 67 124 3.12e-12 64.7
MS.gene70111.t1 AT1G50640 63.265 49 17 1 300 348 28 75 3.77e-12 66.2
MS.gene70111.t1 AT1G75490 52.459 61 28 1 284 344 26 85 1.22e-11 64.3
MS.gene70111.t1 AT3G23220 75.510 49 12 0 300 348 14 62 3.43e-11 61.2
MS.gene70111.t1 AT1G04370 67.925 53 17 0 296 348 16 68 5.11e-11 60.5

Find 84 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAATTCTAGATCCTTTA+TGG 0.083578 4.1:+7125951 None:intergenic
TGCTTTATTATTTACACCTT+TGG 0.293265 4.1:+7122544 None:intergenic
AAGACGATACTCTATTTCTT+AGG 0.307988 4.1:-7125575 MS.gene70111:CDS
CCTTAGCGGACAGGGAAATA+TGG 0.308278 4.1:+7125481 None:intergenic
ATCGGAACGGCGACAACAAC+CGG 0.308340 4.1:-7127383 MS.gene70111:CDS
GCAGACTTCCTCTGAGATAT+TGG 0.311973 4.1:-7126107 MS.gene70111:CDS
CAATGAGATCCACATTCTTC+AGG 0.313889 4.1:+7125520 None:intergenic
TAAGCACTTGAAGATCATTA+AGG 0.329618 4.1:+7125601 None:intergenic
CACTGATACAAGAGCCTTGA+TGG 0.355262 4.1:-7123401 MS.gene70111:CDS
TCCTTTGTCGCTTCTACATC+AGG 0.358743 4.1:+7124200 None:intergenic
GCCTTGATGGGGTTCAAAAC+TGG 0.363302 4.1:-7123388 MS.gene70111:CDS
AATCAAAAGTCTTCATATAT+AGG 0.378865 4.1:-7122840 MS.gene70111:CDS
TCAAGAGAGATGGCGGTTGC+CGG 0.396406 4.1:+7127364 None:intergenic
TCAAGTTGTCAAGACTGAAT+TGG 0.412005 4.1:-7125875 MS.gene70111:CDS
TAGTGTTGAGGATGCTGCTT+TGG 0.421410 4.1:-7122730 MS.gene70111:CDS
TCTAGAATTTGAACTATCTC+AGG 0.425208 4.1:-7125941 MS.gene70111:CDS
ACTATCTCAGGTTGAAAGTA+AGG 0.441851 4.1:-7125929 MS.gene70111:CDS
TAGATCCTTTATGGTACTGC+TGG 0.445273 4.1:+7125960 None:intergenic
CAAGAAGAGGAAGAAGGGTT+TGG 0.446404 4.1:-7122767 MS.gene70111:CDS
AGTAAGGAATAAAATGAATC+AGG 0.448963 4.1:-7123365 MS.gene70111:intron
CAGATTCAGTGGAATCTGTA+AGG 0.450140 4.1:-7123589 MS.gene70111:CDS
AAAGGTGTAAATAATAAAGC+AGG 0.455975 4.1:-7122542 MS.gene70111:CDS
CTCTAGAATCCTTAGCGGAC+AGG 0.456629 4.1:+7125472 None:intergenic
AGAGGCCAGCAGTACCATAA+AGG 0.457352 4.1:-7125965 MS.gene70111:CDS
ATATCCTCTTCACTTAGGCT+TGG 0.469418 4.1:+7123545 None:intergenic
GACGGAGAAGAATGGATTCT+CGG 0.472905 4.1:+7127311 None:intergenic
TTCACATGAACTTGCACTCA+AGG 0.477358 4.1:-7122597 MS.gene70111:CDS
CTTGCATATCCTCTTCACTT+AGG 0.478704 4.1:+7123540 None:intergenic
AACAAATCTCTAGAGCTCAT+TGG 0.483447 4.1:-7125627 MS.gene70111:CDS
GGTTGTTGTCGCCGTTCCGA+TGG 0.485209 4.1:+7127385 None:intergenic
GCGTGAATATACCTGAGATT+AGG 0.492214 4.1:+7127060 None:intergenic
AATGAGATCCACATTCTTCA+GGG 0.494140 4.1:+7125521 None:intergenic
GTCAAGACTGAATTGGAAGA+TGG 0.502240 4.1:-7125868 MS.gene70111:CDS
TGTCTTGGTGTTAGAAGACT+TGG 0.504392 4.1:-7122492 MS.gene70111:CDS
GCAGTCGTGACGGAGAAGAA+TGG 0.506166 4.1:+7127303 None:intergenic
CTTTGATTATCAGATATTGT+TGG 0.507441 4.1:+7122446 None:intergenic
CCATATTTCCCTGTCCGCTA+AGG 0.513175 4.1:-7125481 MS.gene70111:CDS
GATGAGTTAGCTGGAAAGAA+TGG 0.513461 4.1:-7125660 MS.gene70111:intron
ACGGAGAAGAATGGATTCTC+GGG 0.514916 4.1:+7127312 None:intergenic
TTTAACTTCTTCAGATTCAG+TGG 0.515006 4.1:-7123600 MS.gene70111:intron
ATCAACAACCTCCTAATCTC+AGG 0.518815 4.1:-7127071 MS.gene70111:intron
ATCAGAGACACAACAAGAAG+AGG 0.520617 4.1:-7122780 MS.gene70111:CDS
TGGGGTTCAAAACTGGAGTA+AGG 0.525370 4.1:-7123381 MS.gene70111:CDS
ATCAGAGGGATTAAGTGTCT+TGG 0.526809 4.1:-7122507 MS.gene70111:CDS
AGAGGAAGAAGGGTTTGGCT+TGG 0.531425 4.1:-7122762 MS.gene70111:CDS
CCGTTCCGATGGGTGGTCAT+CGG 0.532105 4.1:+7127396 None:intergenic
GTTGTTGTCGCCGTTCCGAT+GGG 0.532247 4.1:+7127386 None:intergenic
AGCAAATAATGCTAGCAAGT+TGG 0.532951 4.1:-7125821 MS.gene70111:CDS
ACACAACAAGAAGAGGAAGA+AGG 0.533196 4.1:-7122773 MS.gene70111:CDS
CACAACAAGAAGAGGAAGAA+GGG 0.536520 4.1:-7122772 MS.gene70111:CDS
ACTGATACAAGAGCCTTGAT+GGG 0.539471 4.1:-7123400 MS.gene70111:CDS
ACTGCGGAACACGGCGGCGT+CGG 0.540988 4.1:-7127285 MS.gene70111:intron
TGCTCCAAGCCTAAGTGAAG+AGG 0.541040 4.1:-7123549 MS.gene70111:CDS
TCTTTCCGAGGAGAAAGAGC+AGG 0.541393 4.1:-7126067 MS.gene70111:CDS
GAATTAGAGATGCAGCAGAC+AGG 0.541958 4.1:-7126005 MS.gene70111:CDS
TTCTAGAGGGCACCTTGAGA+TGG 0.542005 4.1:-7125457 MS.gene70111:CDS
TTGAGCCTGCTCTTTCTCCT+CGG 0.551391 4.1:+7126062 None:intergenic
AGATATTTCTGTTCTTTCCG+AGG 0.557522 4.1:-7126079 MS.gene70111:CDS
TCTAGAATCCTTAGCGGACA+GGG 0.565642 4.1:+7125473 None:intergenic
GCCGTGTTCCGCAGTCGTGA+CGG 0.584900 4.1:+7127293 None:intergenic
GTTGTCGCCGTTCCGATGGG+TGG 0.587663 4.1:+7127389 None:intergenic
AATAATGCTAGCAAGTTGGT+AGG 0.588315 4.1:-7125817 MS.gene70111:intron
GTGCCCTCTAGAATCCTTAG+CGG 0.589145 4.1:+7125467 None:intergenic
TGAATATACCTGAGATTAGG+AGG 0.589458 4.1:+7127063 None:intergenic
TAGAGGGCACCTTGAGATGG+AGG 0.595672 4.1:-7125454 MS.gene70111:intron
ATTCTTCTCCGTCACGACTG+CGG 0.601432 4.1:-7127301 MS.gene70111:CDS
GCCTGATGTAGAAGCGACAA+AGG 0.601605 4.1:-7124201 MS.gene70111:CDS
TCCGTCACGACTGCGGAACA+CGG 0.603076 4.1:-7127294 MS.gene70111:CDS
TGGAACATTTGATAGTGTTG+AGG 0.606632 4.1:-7122742 MS.gene70111:CDS
GAAGCGACAAAGGAAACCAT+AGG 0.607460 4.1:-7124191 MS.gene70111:intron
TCTCTCCGATGACCACCCAT+CGG 0.616308 4.1:-7127401 None:intergenic
CCGATGACCACCCATCGGAA+CGG 0.619370 4.1:-7127396 MS.gene70111:CDS
ATGTGAGACCCTGAAGAATG+TGG 0.620116 4.1:-7125529 MS.gene70111:CDS
AGAATGTTACCTCCATCTCA+AGG 0.620888 4.1:+7125445 None:intergenic
AAGGTGTAAATAATAAAGCA+GGG 0.624242 4.1:-7122541 MS.gene70111:CDS
CAAAGAAAGATGTTATCCAA+AGG 0.625682 4.1:-7122560 MS.gene70111:CDS
CTGTCCGCTAAGGATTCTAG+AGG 0.631536 4.1:-7125471 MS.gene70111:CDS
TTTCTGGTCAAGAGAGATGG+CGG 0.633916 4.1:+7127357 None:intergenic
GGGAAACAAGATCAATCAGA+GGG 0.639790 4.1:-7122521 MS.gene70111:CDS
AGGGAAACAAGATCAATCAG+AGG 0.654836 4.1:-7122522 MS.gene70111:CDS
GCAGACAAGAGAACTATCAG+AGG 0.685394 4.1:-7125983 MS.gene70111:CDS
CTGATACAAGAGCCTTGATG+GGG 0.685757 4.1:-7123399 MS.gene70111:CDS
TGTCCGCTAAGGATTCTAGA+GGG 0.697584 4.1:-7125470 MS.gene70111:CDS
GTCACGACTGCGGAACACGG+CGG 0.735764 4.1:-7127291 MS.gene70111:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATCTCAATTAAAAATT+TGG + chr4.1:7125035-7125054 None:intergenic 10.0%
!! TAATAGTAAAGAAATATTTA+AGG - chr4.1:7125637-7125656 MS.gene70111:CDS 10.0%
!!! AATTTTTAATTGAGATTATT+AGG - chr4.1:7125035-7125054 MS.gene70111:intron 10.0%
!!! ATTTTTAATTGAGATTATTA+GGG - chr4.1:7125036-7125055 MS.gene70111:intron 10.0%
!!! TTATTTTAAAACCAATATTA+AGG - chr4.1:7125129-7125148 MS.gene70111:intron 10.0%
!! AACTTAAGAAGAATTATATA+GGG - chr4.1:7125461-7125480 MS.gene70111:CDS 15.0%
!! AATATATCAACAATTATTTG+AGG + chr4.1:7123524-7123543 None:intergenic 15.0%
!! TAAAGTAATAAAACAACAAT+TGG + chr4.1:7126704-7126723 None:intergenic 15.0%
!! TAACTTAAGAAGAATTATAT+AGG - chr4.1:7125460-7125479 MS.gene70111:CDS 15.0%
!!! AAGAAAATTTGTGTTTTTTA+GGG - chr4.1:7122888-7122907 MS.gene70111:intron 15.0%
!!! AATATTTAAGGTAAAGTTTT+TGG - chr4.1:7125649-7125668 MS.gene70111:CDS 15.0%
!!! ATTTGGTTTTTTTTTTTTTG+TGG - chr4.1:7123034-7123053 MS.gene70111:intron 15.0%
!!! GTTTTAAAATAACACAAAAA+AGG + chr4.1:7125121-7125140 None:intergenic 15.0%
!!! TAAGAAAATTTGTGTTTTTT+AGG - chr4.1:7122887-7122906 MS.gene70111:intron 15.0%
!!! TGAAAATGTTTTTTTTTTGT+AGG - chr4.1:7123457-7123476 MS.gene70111:intron 15.0%
!!! TTTGGTTTTTTTTTTTTTGT+GGG - chr4.1:7123035-7123054 MS.gene70111:intron 15.0%
!!! TTTTAAGTTAAATTCATACA+TGG - chr4.1:7124120-7124139 MS.gene70111:intron 15.0%
!! AAAAAAAATACCATAGAAGA+AGG + chr4.1:7124761-7124780 None:intergenic 20.0%
!! AAAATAACAACAGCTAAAAA+AGG + chr4.1:7124389-7124408 None:intergenic 20.0%
!! AATCAAAAGTCTTCATATAT+AGG - chr4.1:7126962-7126981 MS.gene70111:intron 20.0%
!! ATATTCAAAGAGGTAAATTA+AGG + chr4.1:7124727-7124746 None:intergenic 20.0%
!! GAAATTGTAATTTATGAAAG+AGG + chr4.1:7126019-7126038 None:intergenic 20.0%
!! GTTAAAAACTACCTTAATAT+TGG + chr4.1:7125143-7125162 None:intergenic 20.0%
!! TATATTCAAAGAACATCATA+TGG - chr4.1:7123538-7123557 MS.gene70111:CDS 20.0%
!! TCTAAAAATTATTTGTCCTT+CGG + chr4.1:7125919-7125938 None:intergenic 20.0%
!!! AATTTTTTCGAGAAATTAGA+AGG - chr4.1:7126091-7126110 MS.gene70111:CDS 20.0%
!!! TGTTTTAGAATTGAATTGAA+TGG - chr4.1:7122960-7122979 MS.gene70111:intron 20.0%
!!! TTGATCAGCATTATTTTTTT+GGG + chr4.1:7123911-7123930 None:intergenic 20.0%
! AAGGTGTAAATAATAAAGCA+GGG - chr4.1:7127261-7127280 MS.gene70111:intron 25.0%
! AATAAAACAGAAGTAAAGTG+AGG + chr4.1:7124500-7124519 None:intergenic 25.0%
! AATATGCAATATTGTTTGTG+TGG - chr4.1:7126806-7126825 MS.gene70111:intron 25.0%
! ACAAACTACTATGTTGTATT+AGG + chr4.1:7124607-7124626 None:intergenic 25.0%
! AGTAAGGAATAAAATGAATC+AGG - chr4.1:7126437-7126456 MS.gene70111:intron 25.0%
! ATAAAACAGAAGTAAAGTGA+GGG + chr4.1:7124499-7124518 None:intergenic 25.0%
! ATACAAAGACATCAAAGATT+TGG - chr4.1:7125818-7125837 MS.gene70111:CDS 25.0%
! ATACAAATGAAAGTAAACCA+AGG + chr4.1:7123251-7123270 None:intergenic 25.0%
! ATGAAGCAAGAAACAATAAT+CGG + chr4.1:7126745-7126764 None:intergenic 25.0%
! ATTAATCTCAAGTTCAAATC+AGG + chr4.1:7124994-7125013 None:intergenic 25.0%
! ATTGAATTTGATTGTGGATT+TGG - chr4.1:7123017-7123036 MS.gene70111:intron 25.0%
! CTTTGATTATCAGATATTGT+TGG + chr4.1:7127359-7127378 None:intergenic 25.0%
! TGAAATATGTGTTTCTTTGT+TGG - chr4.1:7125974-7125993 MS.gene70111:CDS 25.0%
! TGAGAAATCAATCATATCAA+AGG + chr4.1:7126840-7126859 None:intergenic 25.0%
! TGTTGAATTGAATTTGATTG+TGG - chr4.1:7123011-7123030 MS.gene70111:intron 25.0%
! TTAAGCTAATGATCATCTTA+TGG - chr4.1:7125209-7125228 MS.gene70111:intron 25.0%
! TTCAAATTCTAGATCCTTTA+TGG + chr4.1:7123854-7123873 None:intergenic 25.0%
! TTCATTGTCAAAAATTCAGA+TGG - chr4.1:7126760-7126779 MS.gene70111:intron 25.0%
! TTCTTTACTATTAGTACCTA+TGG + chr4.1:7125630-7125649 None:intergenic 25.0%
!! AAAGGTGTAAATAATAAAGC+AGG - chr4.1:7127260-7127279 MS.gene70111:intron 25.0%
!! ATGATCATTAGCTTAATGTA+CGG + chr4.1:7125205-7125224 None:intergenic 25.0%
!! CATCGATTAAAAAAAAATCC+AGG + chr4.1:7122828-7122847 None:intergenic 25.0%
!! TCATAAAAGCATATTCAAAG+AGG + chr4.1:7124737-7124756 None:intergenic 25.0%
!! TGATGTCTTTGTATTTTACT+TGG + chr4.1:7125812-7125831 None:intergenic 25.0%
!! TGCAACATTTCTTTTCTTAT+GGG + chr4.1:7125091-7125110 None:intergenic 25.0%
!! TGCTTTATTATTTACACCTT+TGG + chr4.1:7127261-7127280 None:intergenic 25.0%
!! TTGCAACATTTCTTTTCTTA+TGG + chr4.1:7125092-7125111 None:intergenic 25.0%
!!! AGGGTTTTAATTTGATTTTG+AGG - chr4.1:7122907-7122926 MS.gene70111:intron 25.0%
!!! CTGGATTTTTTTTTAATCGA+TGG - chr4.1:7122826-7122845 MS.gene70111:CDS 25.0%
!!! CTTGATCAGCATTATTTTTT+TGG + chr4.1:7123912-7123931 None:intergenic 25.0%
!!! GTTTCTGGAATTTTTTCTAA+AGG - chr4.1:7123057-7123076 MS.gene70111:intron 25.0%
!!! GTTTTAATTTGATTTTGAGG+TGG - chr4.1:7122910-7122929 MS.gene70111:intron 25.0%
!!! TGATCTCAGTTATTTTGTTT+CGG - chr4.1:7122786-7122805 MS.gene70111:CDS 25.0%
!!! TTTTTTTTTTTGTGGGTTTC+TGG - chr4.1:7123042-7123061 MS.gene70111:intron 25.0%
AAGGTTCTTTCCATATTTGA+GGG + chr4.1:7124789-7124808 None:intergenic 30.0%
AGATTCAATATGATTGCAGA+GGG - chr4.1:7127179-7127198 MS.gene70111:intron 30.0%
ATGTGTAGAATTTCATACCT+TGG - chr4.1:7123231-7123250 MS.gene70111:intron 30.0%
ATTTGAATTGCCGATGAATT+TGG + chr4.1:7124918-7124937 None:intergenic 30.0%
CAAAGAAAGATGTTATCCAA+AGG - chr4.1:7127242-7127261 MS.gene70111:intron 30.0%
CTAAGGAATTGATCTCATAT+TGG - chr4.1:7124691-7124710 MS.gene70111:intron 30.0%
CTACTTTAGATTGAAGACTA+TGG + chr4.1:7123281-7123300 None:intergenic 30.0%
CTGATCATATGGTGATTAAT+CGG + chr4.1:7126492-7126511 None:intergenic 30.0%
CTTAATCCTGTGCATAAAAA+TGG - chr4.1:7125777-7125796 MS.gene70111:intron 30.0%
GAGAGATATATGAAAGAGAA+TGG - chr4.1:7125373-7125392 MS.gene70111:intron 30.0%
TAAGCACTTGAAGATCATTA+AGG + chr4.1:7124204-7124223 None:intergenic 30.0%
TACATAGCAGAAATTCTTTG+AGG - chr4.1:7126047-7126066 MS.gene70111:CDS 30.0%
TAGAATTGAATTGAATGGAG+TGG - chr4.1:7122965-7122984 MS.gene70111:intron 30.0%
TAGTGTTCGAAAGATTTAGA+TGG + chr4.1:7124460-7124479 None:intergenic 30.0%
TCTGAAGAAGTTAAAATCTC+TGG + chr4.1:7126197-7126216 None:intergenic 30.0%
TCTTGGTGAAAAAATGAACT+TGG + chr4.1:7124964-7124983 None:intergenic 30.0%
TGATAACTCTATATCTGCAT+TGG - chr4.1:7125501-7125520 MS.gene70111:CDS 30.0%
TGCAAATAAAATTGCCAAAC+AGG - chr4.1:7124080-7124099 MS.gene70111:intron 30.0%
TTTGAATTGCCGATGAATTT+GGG + chr4.1:7124917-7124936 None:intergenic 30.0%
! AAGACGATACTCTATTTCTT+AGG - chr4.1:7124227-7124246 MS.gene70111:intron 30.0%
! ACATTTAGAGTGCTTAATGA+GGG - chr4.1:7125752-7125771 MS.gene70111:intron 30.0%
! CAGTGATTTTATAGTTTCAG+AGG + chr4.1:7124013-7124032 None:intergenic 30.0%
! CTTTTATGAACCTTCTTCTA+TGG - chr4.1:7124748-7124767 MS.gene70111:intron 30.0%
! GACTTCAACATCAATTGTTT+TGG + chr4.1:7126896-7126915 None:intergenic 30.0%
! GCAACATTTCTTTTCTTATG+GGG + chr4.1:7125090-7125109 None:intergenic 30.0%
! GCTCAATTTTTCTGTTCAAA+GGG - chr4.1:7127138-7127157 MS.gene70111:intron 30.0%
! TAAATGGCTTGTGTGAAATT+GGG - chr4.1:7123159-7123178 MS.gene70111:intron 30.0%
! TATCCATAAAAGCATATCAG+TGG + chr4.1:7124552-7124571 None:intergenic 30.0%
! TCTAGAATTTGAACTATCTC+AGG - chr4.1:7123861-7123880 MS.gene70111:intron 30.0%
! TGCTCAATTTTTCTGTTCAA+AGG - chr4.1:7127137-7127156 MS.gene70111:intron 30.0%
! TGTTGTATTAGGTGTTTTCA+AGG + chr4.1:7124596-7124615 None:intergenic 30.0%
! TTTAACTTCTTCAGATTCAG+TGG - chr4.1:7126202-7126221 MS.gene70111:intron 30.0%
! TTTTTGTCTTCCCTCAAATA+TGG - chr4.1:7124776-7124795 MS.gene70111:intron 30.0%
!! CTCTGAAACTATAAAATCAC+TGG - chr4.1:7124011-7124030 MS.gene70111:intron 30.0%
!! TGAGATTGAGATTGATTTTC+TGG + chr4.1:7122464-7122483 None:intergenic 30.0%
!! TTCTAAAGGTTGAGTCTTTT+GGG - chr4.1:7123071-7123090 MS.gene70111:intron 30.0%
!! TTTCTAAAGGTTGAGTCTTT+TGG - chr4.1:7123070-7123089 MS.gene70111:intron 30.0%
!!! CAATTGTTTTGGCTCATTTT+CGG + chr4.1:7126885-7126904 None:intergenic 30.0%
!!! TCTTTTTTCCAATATCTCAG+AGG + chr4.1:7123706-7123725 None:intergenic 30.0%
AAAGAACCTTGGTATTACCA+CGG - chr4.1:7124799-7124818 MS.gene70111:intron 35.0%
AAGCCATTTAGGAGAAAACT+TGG + chr4.1:7123149-7123168 None:intergenic 35.0%
AATGAGATCCACATTCTTCA+GGG + chr4.1:7124284-7124303 None:intergenic 35.0%
AGAATTTCTGCTATGTATGC+AGG + chr4.1:7126044-7126063 None:intergenic 35.0%
AGCAAATAATGCTAGCAAGT+TGG - chr4.1:7123981-7124000 MS.gene70111:intron 35.0%
CAAAATTACAATGACGTACC+TGG - chr4.1:7124886-7124905 MS.gene70111:intron 35.0%
CAAAGACATCAAAGATTTGG+AGG - chr4.1:7125821-7125840 MS.gene70111:CDS 35.0%
CAAGGTTCTTTCCATATTTG+AGG + chr4.1:7124790-7124809 None:intergenic 35.0%
CAATTTCACACAAGCCATTT+AGG + chr4.1:7123160-7123179 None:intergenic 35.0%
CATCTGCAGAAAAATTAGAG+AGG + chr4.1:7126354-7126373 None:intergenic 35.0%
CCAAAACGGGACAATATTTA+CGG + chr4.1:7122633-7122652 None:intergenic 35.0%
CTCAAATATGGAAAGAACCT+TGG - chr4.1:7124788-7124807 MS.gene70111:intron 35.0%
CTTTACTATGCTATGTACGT+CGG + chr4.1:7126518-7126537 None:intergenic 35.0%
GAAAACAAAAACGACATGCA+TGG + chr4.1:7122597-7122616 None:intergenic 35.0%
GAGATTCAATATGATTGCAG+AGG - chr4.1:7127178-7127197 MS.gene70111:intron 35.0%
GATTCAATATGATTGCAGAG+GGG - chr4.1:7127180-7127199 MS.gene70111:intron 35.0%
GCAGATGATGATTACATATC+AGG - chr4.1:7126367-7126386 MS.gene70111:intron 35.0%
GGGGAATTGAAATTGAAAGA+AGG - chr4.1:7123091-7123110 MS.gene70111:intron 35.0%
TAAGAAGTTCGTCCAAAATC+CGG + chr4.1:7125244-7125263 None:intergenic 35.0%
TCAAATCAGGTACTCATTCT+TGG + chr4.1:7124981-7125000 None:intergenic 35.0%
TCATCATCCAGAAAGATTCA+AGG + chr4.1:7122769-7122788 None:intergenic 35.0%
TGAAACCACAAATAGTCACA+TGG - chr4.1:7125290-7125309 MS.gene70111:intron 35.0%
TGAATATACCTGAGATTAGG+AGG + chr4.1:7122742-7122761 None:intergenic 35.0%
TGAATGAATCCTTACTTGCT+TGG + chr4.1:7125874-7125893 None:intergenic 35.0%
TGAGATTACAAAGTCAGCTT+TGG + chr4.1:7123187-7123206 None:intergenic 35.0%
TGTGACTATTTGTGGTTTCA+TGG + chr4.1:7125290-7125309 None:intergenic 35.0%
TGTGAGGTCTAAATCTTTCA+AGG + chr4.1:7126158-7126177 None:intergenic 35.0%
TGTTCTTGAGATGTCTTCTA+TGG - chr4.1:7122666-7122685 MS.gene70111:intron 35.0%
! AAGCTGACTTTGTAATCTCA+AGG - chr4.1:7123187-7123206 MS.gene70111:intron 35.0%
! AATTGAATGGAGTGGTTCTA+GGG - chr4.1:7122973-7122992 MS.gene70111:intron 35.0%
! AGATATTTCTGTTCTTTCCG+AGG - chr4.1:7123723-7123742 MS.gene70111:intron 35.0%
! AGCTGACTTTGTAATCTCAA+GGG - chr4.1:7123188-7123207 MS.gene70111:intron 35.0%
! AGTCCAAGTTTTCTCCTAAA+TGG - chr4.1:7123143-7123162 MS.gene70111:intron 35.0%
! ATTGAAAGAAGGTACACTGT+TGG - chr4.1:7123102-7123121 MS.gene70111:intron 35.0%
! CAGGTACGTCATTGTAATTT+TGG + chr4.1:7124888-7124907 None:intergenic 35.0%
! CTAAATGGCTTGTGTGAAAT+TGG - chr4.1:7123158-7123177 MS.gene70111:intron 35.0%
! GACATTTAGAGTGCTTAATG+AGG - chr4.1:7125751-7125770 MS.gene70111:intron 35.0%
! GCAAGATGATATTTCTACTC+TGG - chr4.1:7124053-7124072 MS.gene70111:intron 35.0%
! TCAAGTTGTCAAGACTGAAT+TGG - chr4.1:7123927-7123946 MS.gene70111:intron 35.0%
! TCACCACTGATATGCTTTTA+TGG - chr4.1:7124546-7124565 MS.gene70111:intron 35.0%
! TCTAAAGGTTGAGTCTTTTG+GGG - chr4.1:7123072-7123091 MS.gene70111:intron 35.0%
! TTTTCTGTTCAAAGGGTCAA+AGG - chr4.1:7127145-7127164 MS.gene70111:intron 35.0%
!! AACAAATCTCTAGAGCTCAT+TGG - chr4.1:7124175-7124194 MS.gene70111:intron 35.0%
!! AATAATGCTAGCAAGTTGGT+AGG - chr4.1:7123985-7124004 MS.gene70111:intron 35.0%
!! ACTATCTCAGGTTGAAAGTA+AGG - chr4.1:7123873-7123892 MS.gene70111:intron 35.0%
!! CTTAGTTTTTGCACAAGAGT+CGG + chr4.1:7124676-7124695 None:intergenic 35.0%
!! CTTTCTCCATTTTTATGCAC+AGG + chr4.1:7125786-7125805 None:intergenic 35.0%
!! TGGAACATTTGATAGTGTTG+AGG - chr4.1:7127060-7127079 MS.gene70111:intron 35.0%
!!! AGTTTGTGACTACCCTTTTT+TGG - chr4.1:7124620-7124639 MS.gene70111:intron 35.0%
!!! GGTTTTGTAGTTGTTTTTCC+TGG - chr4.1:7122807-7122826 MS.gene70111:CDS 35.0%
!!! TCGTTTTTGTTTTCGTTCTC+CGG - chr4.1:7122603-7122622 MS.gene70111:CDS 35.0%
AACCACAAATAGTCACATGG+AGG - chr4.1:7125293-7125312 MS.gene70111:intron 40.0%
AACCTCCATGTGACTATTTG+TGG + chr4.1:7125298-7125317 None:intergenic 40.0%
AAGCACACCTGTCCAAAAAA+GGG + chr4.1:7124635-7124654 None:intergenic 40.0%
AAGTCGTTGTGCAAGTATCT+TGG + chr4.1:7126593-7126612 None:intergenic 40.0%
ACACAACAAGAAGAGGAAGA+AGG - chr4.1:7127029-7127048 MS.gene70111:intron 40.0%
ACAGAAACTCATTGCTAGCA+AGG - chr4.1:7125408-7125427 MS.gene70111:intron 40.0%
ACTGGAAGATGCATTGTTGA+AGG - chr4.1:7124029-7124048 MS.gene70111:intron 40.0%
AGAATGTTACCTCCATCTCA+AGG + chr4.1:7124360-7124379 None:intergenic 40.0%
AGATTAGGAGGTTGTTGATC+TGG + chr4.1:7122730-7122749 None:intergenic 40.0%
AGCACGATTGTTAGCCAAAA+CGG + chr4.1:7122647-7122666 None:intergenic 40.0%
AGGGAAACAAGATCAATCAG+AGG - chr4.1:7127280-7127299 MS.gene70111:intron 40.0%
AGGTGTGAGAAAAAGACCTA+GGG - chr4.1:7126982-7127001 MS.gene70111:intron 40.0%
AGTTCTATTGCAACCTGCTT+AGG - chr4.1:7126325-7126344 MS.gene70111:intron 40.0%
ATATCCTCTTCACTTAGGCT+TGG + chr4.1:7126260-7126279 None:intergenic 40.0%
ATCAACAACCTCCTAATCTC+AGG - chr4.1:7122731-7122750 MS.gene70111:CDS 40.0%
ATCAGAGACACAACAAGAAG+AGG - chr4.1:7127022-7127041 MS.gene70111:intron 40.0%
ATCAGAGGGATTAAGTGTCT+TGG - chr4.1:7127295-7127314 MS.gene70111:CDS 40.0%
ATGTGTTTCTTTGTTGGCCA+AGG - chr4.1:7125980-7125999 MS.gene70111:CDS 40.0%
ATTAGAGAGGTAACCTAAGC+AGG + chr4.1:7126341-7126360 None:intergenic 40.0%
CAATGAGATCCACATTCTTC+AGG + chr4.1:7124285-7124304 None:intergenic 40.0%
CACAACAAGAAGAGGAAGAA+GGG - chr4.1:7127030-7127049 MS.gene70111:intron 40.0%
CAGATTCAGTGGAATCTGTA+AGG - chr4.1:7126213-7126232 MS.gene70111:intron 40.0%
CAGTTCAACTTTCACTGTTG+AGG + chr4.1:7123673-7123692 None:intergenic 40.0%
CATCTTATGGCTCATCATAC+CGG - chr4.1:7125222-7125241 MS.gene70111:intron 40.0%
CATGGAGGTTAAATAGCTAC+TGG - chr4.1:7125308-7125327 MS.gene70111:intron 40.0%
CCGTGATTTCACCAAATTCA+CGG + chr4.1:7124828-7124847 None:intergenic 40.0%
CGACTCTTGTGCAAAAACTA+AGG - chr4.1:7124674-7124693 MS.gene70111:intron 40.0%
CTGGATTCTCCCAAATTCAT+CGG - chr4.1:7124905-7124924 MS.gene70111:intron 40.0%
CTTGCATATCCTCTTCACTT+AGG + chr4.1:7126265-7126284 None:intergenic 40.0%
GAATTGAATGGAGTGGTTCT+AGG - chr4.1:7122972-7122991 MS.gene70111:intron 40.0%
GATGAGTTAGCTGGAAAGAA+TGG - chr4.1:7124142-7124161 MS.gene70111:intron 40.0%
GCGTGAATATACCTGAGATT+AGG + chr4.1:7122745-7122764 None:intergenic 40.0%
GCTAGCAATGAGTTTCTGTA+AGG + chr4.1:7125407-7125426 None:intergenic 40.0%
GGGAAACAAGATCAATCAGA+GGG - chr4.1:7127281-7127300 MS.gene70111:intron 40.0%
GTCAAGACTGAATTGGAAGA+TGG - chr4.1:7123934-7123953 MS.gene70111:intron 40.0%
TAGATCCTTTATGGTACTGC+TGG + chr4.1:7123845-7123864 None:intergenic 40.0%
TAGGGCATGAAATTCCTTCT+GGG - chr4.1:7125054-7125073 MS.gene70111:intron 40.0%
TAGGTGTGAGAAAAAGACCT+AGG - chr4.1:7126981-7127000 MS.gene70111:intron 40.0%
TCATACATGGATGAGTTAGC+TGG - chr4.1:7124133-7124152 MS.gene70111:intron 40.0%
TCATTACCATGTCTGACATC+AGG - chr4.1:7125167-7125186 MS.gene70111:intron 40.0%
TGACTGTTCTCTTTGCTACT+TGG - chr4.1:7123619-7123638 MS.gene70111:intron 40.0%
TGCTTATACACAGACAAGAG+TGG - chr4.1:7123496-7123515 MS.gene70111:intron 40.0%
TTAGGGCATGAAATTCCTTC+TGG - chr4.1:7125053-7125072 MS.gene70111:intron 40.0%
TTCACATGAACTTGCACTCA+AGG - chr4.1:7127205-7127224 MS.gene70111:intron 40.0%
TTCTACCTGTCTTAGTCTCA+TGG - chr4.1:7125727-7125746 MS.gene70111:intron 40.0%
TTGGAAATTACCTTCGTCAC+TGG + chr4.1:7122567-7122586 None:intergenic 40.0%
! CAAGCTGCATTTTCAATGAG+AGG - chr4.1:7127103-7127122 MS.gene70111:intron 40.0%
! CCGTAAATATTGTCCCGTTT+TGG - chr4.1:7122630-7122649 MS.gene70111:intron 40.0%
! CCGTGAATTTGGTGAAATCA+CGG - chr4.1:7124825-7124844 MS.gene70111:intron 40.0%
! GTCATCATCATCTGAAGCAA+AGG - chr4.1:7126913-7126932 MS.gene70111:intron 40.0%
! TCCATTAGCTTCGCAAGTAT+TGG - chr4.1:7123312-7123331 MS.gene70111:intron 40.0%
!! GATTTTCTGGTCAAGAGAGA+TGG + chr4.1:7122451-7122470 None:intergenic 40.0%
!! TGTAGAAGCATTCCCTCATA+AGG - chr4.1:7126124-7126143 MS.gene70111:intron 40.0%
!! TGTCTTGGTGTTAGAAGACT+TGG - chr4.1:7127310-7127329 MS.gene70111:CDS 40.0%
!!! TGGTTCTAGGGTTTTGAAAG+TGG - chr4.1:7122985-7123004 MS.gene70111:intron 40.0%
!!! TTTTGTTTTCGTTCTCCGGT+CGG - chr4.1:7122607-7122626 MS.gene70111:CDS 40.0%
AGGAGGTTGTTGATCTGGAA+AGG + chr4.1:7122725-7122744 None:intergenic 45.0%
ATCCTTACTTGCTTGGTTGC+AGG + chr4.1:7125867-7125886 None:intergenic 45.0%
ATGTGAGACCCTGAAGAATG+TGG - chr4.1:7124273-7124292 MS.gene70111:intron 45.0%
CAAGAAGAGGAAGAAGGGTT+TGG - chr4.1:7127035-7127054 MS.gene70111:intron 45.0%
CGATGAATTTGGGAGAATCC+AGG + chr4.1:7124907-7124926 None:intergenic 45.0%
CTGAAACCTGATGTCAGACA+TGG + chr4.1:7125176-7125195 None:intergenic 45.0%
CTGCAAGTAGAAATCTCCGA+AGG - chr4.1:7125900-7125919 MS.gene70111:CDS 45.0%
GAAGCACACCTGTCCAAAAA+AGG + chr4.1:7124636-7124655 None:intergenic 45.0%
GAAGCGACAAAGGAAACCAT+AGG - chr4.1:7125611-7125630 MS.gene70111:CDS 45.0%
GAAGCGGAAGAAGAAGATAG+AGG + chr4.1:7122694-7122713 None:intergenic 45.0%
GAATTAGAGATGCAGCAGAC+AGG - chr4.1:7123797-7123816 MS.gene70111:intron 45.0%
GAGCGAAGATATCTCCTGTT+TGG + chr4.1:7124097-7124116 None:intergenic 45.0%
GAGGAAGAGTAAGAGAGAGA+CGG - chr4.1:7122541-7122560 MS.gene70111:CDS 45.0%
GCACGATTGTTAGCCAAAAC+GGG + chr4.1:7122646-7122665 None:intergenic 45.0%
GCAGACAAGAGAACTATCAG+AGG - chr4.1:7123819-7123838 MS.gene70111:intron 45.0%
GCCAATACTTGCGAAGCTAA+TGG + chr4.1:7123316-7123335 None:intergenic 45.0%
GGTGTGAGAAAAAGACCTAG+GGG - chr4.1:7126983-7127002 MS.gene70111:intron 45.0%
GTCGGTCTCTATTGCTTGTA+TGG + chr4.1:7124658-7124677 None:intergenic 45.0%
GTGGTTTCATGGAGCGAATA+AGG + chr4.1:7125279-7125298 None:intergenic 45.0%
TACGTCGGAAGCTGATCATA+TGG + chr4.1:7126503-7126522 None:intergenic 45.0%
TCACGCTCCTTGAATCTTTC+TGG - chr4.1:7122759-7122778 MS.gene70111:CDS 45.0%
TGGAAAGGCAGAAGAAGAAG+CGG + chr4.1:7122710-7122729 None:intergenic 45.0%
TGGGGTTCAAAACTGGAGTA+AGG - chr4.1:7126421-7126440 MS.gene70111:intron 45.0%
TGTCACCATGAGACTAAGAC+AGG + chr4.1:7125735-7125754 None:intergenic 45.0%
TGTCCGCTAAGGATTCTAGA+GGG - chr4.1:7124332-7124351 MS.gene70111:intron 45.0%
TTCCTGCAACCAAGCAAGTA+AGG - chr4.1:7125862-7125881 MS.gene70111:CDS 45.0%
TTTGGTGAAATCACGGACAC+TGG - chr4.1:7124832-7124851 MS.gene70111:intron 45.0%
! AAGGATGTGCAGCCTTATGA+GGG + chr4.1:7126139-7126158 None:intergenic 45.0%
! ACGGAGAAGAATGGATTCTC+GGG + chr4.1:7122493-7122512 None:intergenic 45.0%
! GACGGAGAAGAATGGATTCT+CGG + chr4.1:7122494-7122513 None:intergenic 45.0%
! TAGTGTTGAGGATGCTGCTT+TGG - chr4.1:7127072-7127091 MS.gene70111:CDS 45.0%
! TCCTTTGTCGCTTCTACATC+AGG + chr4.1:7125605-7125624 None:intergenic 45.0%
! TCTAGAATCCTTAGCGGACA+GGG + chr4.1:7124332-7124351 None:intergenic 45.0%
! TCTGCTGCATATTTTCCCCT+AGG + chr4.1:7127001-7127020 None:intergenic 45.0%
! TGGCTCATCATACCGGATTT+TGG - chr4.1:7125229-7125248 MS.gene70111:intron 45.0%
! TGTATGCAGCAAGAAGTGTG+AGG + chr4.1:7126174-7126193 None:intergenic 45.0%
! TTGAGGTGGTTTTTGCACGT+GGG - chr4.1:7122924-7122943 MS.gene70111:intron 45.0%
! TTTCTGGTCAAGAGAGATGG+CGG + chr4.1:7122448-7122467 None:intergenic 45.0%
!! CGACATGCATGGCTTTAGAT+TGG + chr4.1:7122586-7122605 None:intergenic 45.0%
!! GCAGACTTCCTCTGAGATAT+TGG - chr4.1:7123695-7123714 MS.gene70111:intron 45.0%
!! TTTGAGGTGGTTTTTGCACG+TGG - chr4.1:7122923-7122942 MS.gene70111:intron 45.0%
!!! GTGACTACCCTTTTTTGGAC+AGG - chr4.1:7124625-7124644 MS.gene70111:intron 45.0%
!!! TCCAGTTTTGAACCCCATCA+AGG + chr4.1:7126418-7126437 None:intergenic 45.0%
AGAGGAAGAAGGGTTTGGCT+TGG - chr4.1:7127040-7127059 MS.gene70111:intron 50.0%
AGAGGCCAGCAGTACCATAA+AGG - chr4.1:7123837-7123856 MS.gene70111:intron 50.0%
ATTCTTCTCCGTCACGACTG+CGG - chr4.1:7122501-7122520 MS.gene70111:CDS 50.0%
CAGAAGTAAAGTGAGGGCTG+TGG + chr4.1:7124493-7124512 None:intergenic 50.0%
CCATATTTCCCTGTCCGCTA+AGG - chr4.1:7124321-7124340 MS.gene70111:intron 50.0%
CTGTCCGCTAAGGATTCTAG+AGG - chr4.1:7124331-7124350 MS.gene70111:intron 50.0%
GAGGTCCAACTCTTTCACCT+TGG + chr4.1:7126000-7126019 None:intergenic 50.0%
GCCTGATGTAGAAGCGACAA+AGG - chr4.1:7125601-7125620 MS.gene70111:CDS 50.0%
GCCTTGATGGGGTTCAAAAC+TGG - chr4.1:7126414-7126433 MS.gene70111:intron 50.0%
GGACAATATTTACGGCCGAC+CGG + chr4.1:7122625-7122644 None:intergenic 50.0%
GGGGAAAAAGACATCCCAGA+AGG + chr4.1:7125071-7125090 None:intergenic 50.0%
GTTGGCCAAGGTGAAAGAGT+TGG - chr4.1:7125992-7126011 MS.gene70111:CDS 50.0%
TACCACGGACACCGTGAATT+TGG - chr4.1:7124814-7124833 MS.gene70111:intron 50.0%
TCTTTCCGAGGAGAAAGAGC+AGG - chr4.1:7123735-7123754 MS.gene70111:intron 50.0%
TGCTCCAAGCCTAAGTGAAG+AGG - chr4.1:7126253-7126272 MS.gene70111:intron 50.0%
TTGAGCCTGCTCTTTCTCCT+CGG + chr4.1:7123743-7123762 None:intergenic 50.0%
! CAAGGATGTGCAGCCTTATG+AGG + chr4.1:7126140-7126159 None:intergenic 50.0%
! CCTTAGCGGACAGGGAAATA+TGG + chr4.1:7124324-7124343 None:intergenic 50.0%
!! CTCTAGAATCCTTAGCGGAC+AGG + chr4.1:7124333-7124352 None:intergenic 50.0%
!! GTGCCCTCTAGAATCCTTAG+CGG + chr4.1:7124338-7124357 None:intergenic 50.0%
!! TTCTAGAGGGCACCTTGAGA+TGG - chr4.1:7124345-7124364 MS.gene70111:intron 50.0%
ATCGGAACGGCGACAACAAC+CGG - chr4.1:7122419-7122438 MS.gene70111:CDS 55.0%
CACCAAATTCACGGTGTCCG+TGG + chr4.1:7124819-7124838 None:intergenic 55.0%
CGGTGTCCGTGGTAATACCA+AGG + chr4.1:7124808-7124827 None:intergenic 55.0%
GTTGTTGTCGCCGTTCCGAT+GGG + chr4.1:7122419-7122438 None:intergenic 55.0%
! GCAGTCGTGACGGAGAAGAA+TGG + chr4.1:7122502-7122521 None:intergenic 55.0%
! TCAAGAGAGATGGCGGTTGC+CGG + chr4.1:7122441-7122460 None:intergenic 55.0%
!! TAGAGGGCACCTTGAGATGG+AGG - chr4.1:7124348-7124367 MS.gene70111:intron 55.0%
AGAGAGACGGCCAGTGACGA+AGG - chr4.1:7122554-7122573 MS.gene70111:CDS 60.0%
GGTTGTTGTCGCCGTTCCGA+TGG + chr4.1:7122420-7122439 None:intergenic 60.0%
TCCGTCACGACTGCGGAACA+CGG - chr4.1:7122508-7122527 MS.gene70111:CDS 60.0%
GCCGTGTTCCGCAGTCGTGA+CGG + chr4.1:7122512-7122531 None:intergenic 65.0%
GTCACGACTGCGGAACACGG+CGG - chr4.1:7122511-7122530 MS.gene70111:CDS 65.0%
GTTGTCGCCGTTCCGATGGG+TGG + chr4.1:7122416-7122435 None:intergenic 65.0%
ACTGCGGAACACGGCGGCGT+CGG - chr4.1:7122517-7122536 MS.gene70111:CDS 70.0%
!! GGAACACGGCGGCGTCGGTG+AGG - chr4.1:7122522-7122541 MS.gene70111:CDS 75.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 7122409 7127415 7122409 ID=MS.gene70111
chr4.1 mRNA 7122409 7127415 7122409 ID=MS.gene70111.t1;Parent=MS.gene70111
chr4.1 exon 7127286 7127415 7127286 ID=MS.gene70111.t1.exon1;Parent=MS.gene70111.t1
chr4.1 CDS 7127286 7127415 7127286 ID=cds.MS.gene70111.t1;Parent=MS.gene70111.t1
chr4.1 exon 7127072 7127093 7127072 ID=MS.gene70111.t1.exon2;Parent=MS.gene70111.t1
chr4.1 CDS 7127072 7127093 7127072 ID=cds.MS.gene70111.t1;Parent=MS.gene70111.t1
chr4.1 exon 7125818 7126128 7125818 ID=MS.gene70111.t1.exon3;Parent=MS.gene70111.t1
chr4.1 CDS 7125818 7126128 7125818 ID=cds.MS.gene70111.t1;Parent=MS.gene70111.t1
chr4.1 exon 7125455 7125672 7125455 ID=MS.gene70111.t1.exon4;Parent=MS.gene70111.t1
chr4.1 CDS 7125455 7125672 7125455 ID=cds.MS.gene70111.t1;Parent=MS.gene70111.t1
chr4.1 exon 7124192 7124237 7124192 ID=MS.gene70111.t1.exon5;Parent=MS.gene70111.t1
chr4.1 CDS 7124192 7124237 7124192 ID=cds.MS.gene70111.t1;Parent=MS.gene70111.t1
chr4.1 exon 7123527 7123608 7123527 ID=MS.gene70111.t1.exon6;Parent=MS.gene70111.t1
chr4.1 CDS 7123527 7123608 7123527 ID=cds.MS.gene70111.t1;Parent=MS.gene70111.t1
chr4.1 exon 7123366 7123435 7123366 ID=MS.gene70111.t1.exon7;Parent=MS.gene70111.t1
chr4.1 CDS 7123366 7123435 7123366 ID=cds.MS.gene70111.t1;Parent=MS.gene70111.t1
chr4.1 exon 7122700 7122865 7122700 ID=MS.gene70111.t1.exon8;Parent=MS.gene70111.t1
chr4.1 CDS 7122700 7122865 7122700 ID=cds.MS.gene70111.t1;Parent=MS.gene70111.t1
chr4.1 exon 7122409 7122626 7122409 ID=MS.gene70111.t1.exon9;Parent=MS.gene70111.t1
chr4.1 CDS 7122409 7122626 7122409 ID=cds.MS.gene70111.t1;Parent=MS.gene70111.t1
Gene Sequence

>MS.gene70111

ATGACCACCCATCGGAACGGCGACAACAACCGGCAACCGCCATCTCTCTTGACCAGAAAATCAATCTCAATCTCAATCTCTCCCGAGAATCCATTCTTCTCCGTCACGACTGCGGAACACGGCGGCGTCGGTGAGGAAGAGTAAGAGAGAGACGGCCAGTGACGAAGGTAATTTCCAATCTAAAGCCATGCATGTCGTTTTTGTTTTCGTTCTCCGGTCGGCCGTAAATATTGTCCCGTTTTGGCTAACAATCGTGCTGTTCTTGAGATGTCTTCTATGGATCCTCTATCTTCTTCTTCCGCTTCTTCTTCTGCCTTTCCAGATCAACAACCTCCTAATCTCAGGTATATTCACGCTCCTTGAATCTTTCTGGATGATGATCTCAGTTATTTTGTTTCGGTTTTGTAGTTGTTTTTCCTGGATTTTTTTTTAATCGATGGTTATTTTAAAATTTTATGCTGTTGATTAGATACATTGATAAGAAAATTTGTGTTTTTTAGGGTTTTAATTTGATTTTGAGGTGGTTTTTGCACGTGGGTCGTTTTTGTTTGTGTTTTAGAATTGAATTGAATGGAGTGGTTCTAGGGTTTTGAAAGTGGTTTTGTTGAATTGAATTTGATTGTGGATTTGGTTTTTTTTTTTTTGTGGGTTTCTGGAATTTTTTCTAAAGGTTGAGTCTTTTGGGGAATTGAAATTGAAAGAAGGTACACTGTTGGATACAAGACTGAAATTTGAGTCCAAGTTTTCTCCTAAATGGCTTGTGTGAAATTGGGTTCCAAAGCTGACTTTGTAATCTCAAGGGTTATTAATAATTAAAAAAAAATGTGTAGAATTTCATACCTTGGTTTACTTTCATTTGTATGTATTCACCATAGTCTTCAATCTAAAGTAGATGAAAATTTATCCATTAGCTTCGCAAGTATTGGCAGATAATGATGCATTTGAAAAGAAGTAGAGCTAACTAAACTAACTACTAACTCTGCAGACACAGACACAGACAAGATAATGATGCATTTGAAAAGAAGTAGAGAGATTCATTTTTTGTTAATGAAAATGTTTTTTTTTTGTAGGAGCTGAACAAGATTGATGCTTATACACAGACAAGAGTGGATCCTCAAATAATTGTTGATATATTCAAAGAACATCATATGGTATTAAATTCGTTGTTATGAATCTCTATCACTACTGATTTTGAATTGTGATTTGATTCTGACTGTTCTCTTTGCTACTTGGTTGAAAATTTTACATTTCTATTGTGCAGCCTCAACAGTGAAAGTTGAACTGCAGCAGACTTCCTCTGAGATATTGGAAAAAAGATATTTCTGTTCTTTCCGAGGAGAAAGAGCAGGCTCAAGTATCTAGAGTTGCTGCAGAGACAGAGTTAGAGAGAATTAGAGATGCAGCAGACAGGCAGACAAGAGAACTATCAGAGGCCAGCAGTACCATAAAGGATCTAGAATTTGAACTATCTCAGGTTGAAAGTAAGGTAAATTTATTGACCCAAAAAAATAATGCTGATCAAGTTGTCAAGACTGAATTGGAAGATGGATTGAAGAAGCTGCAAGATGAAGCAGCAAATAATGCTAGCAAGTTGGTAGGTTCCTCTGAAACTATAAAATCACTGGAAGATGCATTGTTGAAGGCGCAAGATGATATTTCTACTCTGGAAGATGCAAATAAAATTGCCAAACAGGAGATATCTTCGCTCAGTTTTTAAGTTAAATTCATACATGGATGAGTTAGCTGGAAAGAATGGCAGCTTAGAGAACAAATCTCTAGAGCTCATTGGATTCCTTAATGATCTTCAAGTGCTTATGAAAGACGATACTCTATTTCTTAGGATAAAACAATGCTTTGAGAGAAAATGTGAGACCCTGAAGAATGTGGATCTCATTGTGAGCAAAGTAAGAAACCATATTTCCCTGTCCGCTAAGGATTCTAGAGGGCACCTTGAGATGGAGGTAACATTCTTATTATCCTTTTTTAGCTGTTGTTATTTTCTCAAGTTGTGTATTTGATACTGTTTTGATTTAATCTACATATATTTGCCATCTAAATCTTTCGAACACTATGATATGTGTCCACAGCCCTCACTTTACTTCTGTTTTATTTATTCTAAAATGTATTCTTCATTCACTCACCACTGATATGCTTTTATGGATACATTGAGTGAAAAGAAAAACACCTTGAAAACACCTAATACAACATAGTAGTTTGTGACTACCCTTTTTTGGACAGGTGTGCTTCCATACAAGCAATAGAGACCGACTCTTGTGCAAAAACTAAGGAATTGATCTCATATTGGATACTTCTTTCCTTAATTTACCTCTTTGAATATGCTTTTATGAACCTTCTTCTATGGTATTTTTTTTGTCTTCCCTCAAATATGGAAAGAACCTTGGTATTACCACGGACACCGTGAATTTGGTGAAATCACGGACACTGGTTTTGTTGAATCTTGATAGTTTAGCTTTTGCCAAAATTACAATGACGTACCTGGATTCTCCCAAATTCATCGGCAATTCAAATATGTATTAAGAAATTAAGAATGACCAAGTTCATTTTTTCACCAAGAATGAGTACCTGATTTGAACTTGAGATTAATCAATGCACTTTTAATGTGCCAAATTTTTAATTGAGATTATTAGGGCATGAAATTCCTTCTGGGATGTCTTTTTCCCCATAAGAAAAGAAATGTTGCAAATTGCACCTTTTTTGTGTTATTTTAAAACCAATATTAAGGTAGTTTTTAACTACTTCATTACCATGTCTGACATCAGGTTTCAGCTCTGACCGTACATTAAGCTAATGATCATCTTATGGCTCATCATACCGGATTTTGGACGAACTTCTTATGTTTATAACTACCTTATTCGCTCCATGAAACCACAAATAGTCACATGGAGGTTAAATAGCTACTGGAGAGATTGTTTTGCTGAGAAAGATAACTTTTTACTGCATGCAGAGAGATATATGAAAGAGAATGGAACTGAAACCTTACAGAAACTCATTGCTAGCAAGGTAATTACAGCTAAAAATGTCAAAATACTATAACTTAAGAAGAATTATATAGGGAAGCATGTATGTGTTTATGATAACTCTATATCTGCATTGGCAATTGAAAATTTTAGCTAATTCTGTTTTTTTTTTTGTTTTTTTTTTTTTTTAAATATTGAAGAACACAATGTGTATGCCTGATGTAGAAGCGACAAAGGAAACCATAGGTACTAATAGTAAAGAAATATTTAAGGTAAAGTTTTTGGTGTTAAGTTAATTGTGACATTAATAGTTTTTGTTACAAGTTCTTGTATGAGTAGATTCTACCTGTCTTAGTCTCATGGTGACATTTAGAGTGCTTAATGAGGGAGCTTAATCCTGTGCATAAAAATGGAGAAAGACTCCAAGTAAAATACAAAGACATCAAAGATTTGGAGGCTATTGAGAAAAAAGATTTTCCTGCAACCAAGCAAGTAAGGATTCATTCATATTCACTGCAAGTAGAAATCTCCGAAGGACAAATAATTTTTAGACTTGATTTCAGTCACAATATGTCAGATGATTTACTTGAAATATGTGTTTCTTTGTTGGCCAAGGTGAAAGAGTTGGACCTCTTTCATAAATTACAATTTCTACCTGCATACATAGCAGAAATTCTTTGAGGAAATTTTATTTGAATAATTGCAATTTTTTCGAGAAATTAGAAGGATTCATCACGTGTAGAAGCATTCCCTCATAAGGCTGCACATCCTTGAAAGATTTAGACCTCACACTTCTTGCTGCATACACCAGAGATTTTAACTTCTTCAGATTCAGTGGAATCTGTAAGGATTCTTAATGACACAAATGCTCCAAGCCTAAGTGAAGAGGATATGCAAGCTTTGCAAATAGTGTAAGACTTCATCTTCATTGATGCTTCAGTTCTATTGCAACCTGCTTAGGTTACCTCTCTAATTTTTCTGCAGATGATGATTACATATCAGGAGAAATGTGAACACTGATACAAGAGCCTTGATGGGGTTCAAAACTGGAGTAAGGAATAAAATGAATCAGGTATGATAATTGATTCTGAATTGCTGCAAGCCGATTAATCACCATATGATCAGCTTCCGACGTACATAGCATAGTAAAGTATTTGTAAGCTTTCTTTCAACAATTTACTTTATTTATCTTCAAAGCTAAATCCAAGATACTTGCACAACGACTTTTATGTTTCATAATAATTATTTGACAATAAAAATGAGTTTTGTGAGTGTAAATAAGAATATTTGACTTTATAATTTGAAGTACTTGATCCAATTGTTGTTTTATTACTTTATAATTTGAAGTACTTGATCCGATTATTGTTTCTTGCTTCATTGTCAAAAATTCAGATGGTTAGTTGTTTGATTACATTGCTAAATATGCAATATTGTTTGTGTGGTTTTCTTTCCTTTGATATGATTGATTTCTCATCGAGTTCGCAGACAACAATTACCGAAAATGAGCCAAAACAATTGATGTTGAAGTCATCATCATCTGAAGCAAAGGAAGTGTTGCAGAATAATAATTAGATGAATCAAAAGTCTTCATATATAGGTGTGAGAAAAAGACCTAGGGGAAAATATGCAGCAGAGATCAGAGACACAACAAGAAGAGGAAGAAGGGTTTGGCTTGGAACATTTGATAGTGTTGAGGATGCTGCTTTGGCTTACGATCAAGCTGCATTTTCAATGAGAGGTAATAATGTTGTGCTCAATTTTTCTGTTCAAAGGGTCAAAGGATCTTTGCAAGAGATTCAATATGATTGCAGAGGGGTTTTCACATGAACTTGCACTCAAGGAGAGACACTGTGAACAAAGAAAGATGTTATCCAAAGGTGTAAATAATAAAGCAGGGAAACAAGATCAATCAGAGGGATTAAGTGTCTTGGTGTTAGAAGACTTGGCAGTTGAATATCTTGAGCAACTTCCAACAATATCTGATAATCAAAGTACAAGCAGCAGCAACTTACGATCAAGTTGTATGTAA
Protein sequence

>MS.gene70111.t1

MTTHRNGDNNRQPPSLLTRKSISISISPENPFFSVTTAEHGGVDQQPPNLSRLPLRYWKKDISVLSEEKEQAQVSRVAAETELERIRDAADRQTRELSEASSTIKDLEFELSQVESKVNLLTQKNNADQVVKTELEDGLKKLQDEAANNASKLVAGKNGSLENKSLELIGFLNDLQVLMKDDTLFLRIKQCFERKCETLKNVDLIVSKVRNHISLSAKDSRGHLEMENTMCMPDVEATKETIDSVESVRILNDTNAPSLSEEDMQALQIVRNVNTDTRALMGFKTGVRNKMNQMNQKSSYIGVRKRPRGKYAAEIRDTTRRGRRVWLGTFDSVEDAALAYDQAAFSMREGFSHELALKERHCEQRKMLSKGVNNKAGKQDQSEGLSVLVLEDLAVEYLEQLPTISDNQSTSSSNLRSSCM