Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05191.t1 | XP_003621860.1 | 80 | 45 | 9 | 0 | 25 | 69 | 55 | 99 | 7.60E-08 | 66.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05191.t1 | O04469 | 55.6 | 45 | 20 | 0 | 25 | 69 | 56 | 100 | 2.1e-06 | 53.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05191.t1 | G7KWT9 | 80.0 | 45 | 9 | 0 | 25 | 69 | 55 | 99 | 5.5e-08 | 66.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene05191 | 0.807865 | 4.10E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene05191 | 0.816841 | 4.49E-52 | -1.69E-46 |
| MS.gene050562 | MS.gene05191 | 0.803987 | 2.68E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene05191 | 0.817228 | 3.68E-52 | -1.69E-46 |
| MS.gene051332 | MS.gene05191 | 0.816835 | 4.51E-52 | -1.69E-46 |
| MS.gene051492 | MS.gene05191 | 0.801163 | 1.03E-48 | -1.69E-46 |
| MS.gene051744 | MS.gene05191 | 0.810284 | 1.24E-50 | -1.69E-46 |
| MS.gene05191 | MS.gene05415 | 0.813927 | 2.00E-51 | -1.69E-46 |
| MS.gene05191 | MS.gene054576 | 0.803829 | 2.89E-49 | -1.69E-46 |
| MS.gene05191 | MS.gene05686 | 0.828032 | 1.13E-54 | -1.69E-46 |
| MS.gene05191 | MS.gene056973 | 0.80518 | 1.51E-49 | -1.69E-46 |
| MS.gene05191 | MS.gene059625 | 0.807129 | 5.88E-50 | -1.69E-46 |
| MS.gene05191 | MS.gene060373 | 0.818239 | 2.17E-52 | -1.69E-46 |
| MS.gene05191 | MS.gene062165 | 0.812495 | 4.12E-51 | -1.69E-46 |
| MS.gene05191 | MS.gene065039 | 0.800464 | 1.42E-48 | -1.69E-46 |
| MS.gene05191 | MS.gene066313 | 0.814871 | 1.24E-51 | -1.69E-46 |
| MS.gene05191 | MS.gene066335 | 0.843096 | 1.73E-58 | -1.69E-46 |
| MS.gene05191 | MS.gene066680 | 0.802593 | 5.21E-49 | -1.69E-46 |
| MS.gene05191 | MS.gene069956 | 0.803667 | 3.13E-49 | -1.69E-46 |
| MS.gene05191 | MS.gene070193 | 0.810196 | 1.30E-50 | -1.69E-46 |
| MS.gene05191 | MS.gene070301 | 0.832023 | 1.20E-55 | -1.69E-46 |
| MS.gene05191 | MS.gene072819 | 0.820951 | 5.23E-53 | -1.69E-46 |
| MS.gene05191 | MS.gene09348 | 0.801648 | 8.15E-49 | -1.69E-46 |
| MS.gene05191 | MS.gene20809 | 0.805064 | 1.60E-49 | -1.69E-46 |
| MS.gene05191 | MS.gene20859 | 0.806142 | 9.49E-50 | -1.69E-46 |
| MS.gene05191 | MS.gene28461 | 0.808007 | 3.83E-50 | -1.69E-46 |
| MS.gene05191 | MS.gene29036 | 0.807617 | 4.63E-50 | -1.69E-46 |
| MS.gene05191 | MS.gene29096 | 0.808677 | 2.75E-50 | -1.69E-46 |
| MS.gene05191 | MS.gene30085 | 0.820445 | 6.83E-53 | -1.69E-46 |
| MS.gene05191 | MS.gene30828 | 0.805087 | 1.58E-49 | -1.69E-46 |
| MS.gene05191 | MS.gene31231 | 0.804677 | 1.93E-49 | -1.69E-46 |
| MS.gene05191 | MS.gene31904 | 0.823647 | 1.24E-53 | -1.69E-46 |
| MS.gene05191 | MS.gene32182 | 0.831106 | 2.01E-55 | -1.69E-46 |
| MS.gene05191 | MS.gene33967 | 0.831762 | 1.39E-55 | -1.69E-46 |
| MS.gene05191 | MS.gene35044 | 0.806953 | 6.40E-50 | -1.69E-46 |
| MS.gene05191 | MS.gene35324 | 0.807444 | 5.04E-50 | -1.69E-46 |
| MS.gene05191 | MS.gene35858 | 0.818914 | 1.53E-52 | -1.69E-46 |
| MS.gene05191 | MS.gene38659 | 0.805526 | 1.28E-49 | -1.69E-46 |
| MS.gene05191 | MS.gene39406 | 0.824151 | 9.43E-54 | -1.69E-46 |
| MS.gene05191 | MS.gene40068 | 0.806911 | 6.54E-50 | -1.69E-46 |
| MS.gene05191 | MS.gene40079 | 0.813201 | 2.88E-51 | -1.69E-46 |
| MS.gene05191 | MS.gene49949 | 0.804033 | 2.62E-49 | -1.69E-46 |
| MS.gene05191 | MS.gene53064 | 0.831202 | 1.91E-55 | -1.69E-46 |
| MS.gene05191 | MS.gene53476 | 0.800066 | 1.72E-48 | -1.69E-46 |
| MS.gene05191 | MS.gene54195 | 0.82115 | 4.70E-53 | -1.69E-46 |
| MS.gene05191 | MS.gene58068 | 0.805874 | 1.08E-49 | -1.69E-46 |
| MS.gene05191 | MS.gene58248 | 0.800417 | 1.46E-48 | -1.69E-46 |
| MS.gene05191 | MS.gene58547 | 0.811218 | 7.82E-51 | -1.69E-46 |
| MS.gene05191 | MS.gene58802 | 0.807238 | 5.57E-50 | -1.69E-46 |
| MS.gene05191 | MS.gene61424 | 0.812249 | 4.66E-51 | -1.69E-46 |
| MS.gene05191 | MS.gene62975 | 0.800921 | 1.15E-48 | -1.69E-46 |
| MS.gene05191 | MS.gene64659 | 0.801486 | 8.80E-49 | -1.69E-46 |
| MS.gene05191 | MS.gene67388 | 0.813854 | 2.07E-51 | -1.69E-46 |
| MS.gene05191 | MS.gene68543 | 0.814765 | 1.30E-51 | -1.69E-46 |
| MS.gene05191 | MS.gene70111 | 0.813061 | 3.10E-51 | -1.69E-46 |
| MS.gene05191 | MS.gene71440 | 0.822175 | 2.73E-53 | -1.69E-46 |
| MS.gene05191 | MS.gene72064 | 0.810388 | 1.18E-50 | -1.69E-46 |
| MS.gene05191 | MS.gene74138 | 0.801408 | 9.13E-49 | -1.69E-46 |
| MS.gene05191 | MS.gene74758 | 0.8045 | 2.10E-49 | -1.69E-46 |
| MS.gene05191 | MS.gene80631 | 0.805005 | 1.64E-49 | -1.69E-46 |
| MS.gene05191 | MS.gene80844 | 0.810823 | 9.52E-51 | -1.69E-46 |
| MS.gene05191 | MS.gene80853 | 0.807336 | 5.31E-50 | -1.69E-46 |
| MS.gene05191 | MS.gene81047 | 0.803157 | 3.99E-49 | -1.69E-46 |
| MS.gene05191 | MS.gene84454 | 0.810909 | 9.12E-51 | -1.69E-46 |
| MS.gene05191 | MS.gene91268 | 0.813915 | 2.01E-51 | -1.69E-46 |
| MS.gene05191 | MS.gene92320 | 0.812437 | 4.24E-51 | -1.69E-46 |
| MS.gene05191 | MS.gene97534 | 0.819098 | 1.39E-52 | -1.69E-46 |
| MS.gene05191 | MS.gene98064 | 0.820004 | 8.62E-53 | -1.69E-46 |
| MS.gene05191 | MS.gene98612 | 0.810307 | 1.23E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05191.t1 | MTR_7g024300 | 50.000 | 80 | 37 | 1 | 1 | 77 | 28 | 107 | 1.79e-18 | 77.0 |
| MS.gene05191.t1 | MTR_7g024280 | 46.250 | 80 | 40 | 1 | 1 | 77 | 27 | 106 | 5.62e-15 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05191.t1 | AT1G65520 | 49.206 | 63 | 28 | 1 | 11 | 69 | 38 | 100 | 1.81e-11 | 58.5 |
Find 30 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGTGAACTTGGGTAAAT+AGG | 0.317284 | 6.4:+52260865 | None:intergenic |
| GTATGTTACTTCAATATTCC+AGG | 0.392807 | 6.4:+52260841 | None:intergenic |
| ATTCCAGGATTGTGTGAACT+TGG | 0.431318 | 6.4:+52260856 | None:intergenic |
| CACCGTCACGCCTTCGCCGC+AGG | 0.455545 | 6.4:-52262677 | MS.gene05191:intron |
| GAAGGCGGCGATGGTTGGCA+TGG | 0.457955 | 6.4:+52262699 | None:intergenic |
| CGGCGAAGGCGTGACGGTGA+AGG | 0.465129 | 6.4:+52262681 | None:intergenic |
| ACGGTGAAGGCGGCGATGGT+TGG | 0.471893 | 6.4:+52262694 | None:intergenic |
| TTGATTGAATTGAGAAGTGT+GGG | 0.494586 | 6.4:+52262863 | None:intergenic |
| TACCCAAGTTCACACAATCC+TGG | 0.508621 | 6.4:-52260859 | MS.gene05191:CDS |
| AAGGCGGCGATGGTTGGCAT+GGG | 0.512341 | 6.4:+52262700 | None:intergenic |
| GTAACATACTACATGAGTTA+CGG | 0.526123 | 6.4:-52260827 | MS.gene05191:CDS |
| CGTGACGGTGAAGGCGGCGA+TGG | 0.531005 | 6.4:+52262690 | None:intergenic |
| CATGGGATGAGAGAGAAGTT+CGG | 0.543922 | 6.4:+52262717 | None:intergenic |
| TTCCAGGATTGTGTGAACTT+GGG | 0.555975 | 6.4:+52260857 | None:intergenic |
| GAGGATGTAACCTGCGGCGA+AGG | 0.566868 | 6.4:+52262667 | None:intergenic |
| TTTGATTGAATTGAGAAGTG+TGG | 0.568432 | 6.4:+52262862 | None:intergenic |
| CAACAGCTACGACATCGATC+GGG | 0.568492 | 6.4:-52262797 | MS.gene05191:CDS |
| CCGATCGATGTCGTAGCTGT+TGG | 0.575849 | 6.4:+52262798 | None:intergenic |
| CGAAGGCGTGACGGTGAAGG+CGG | 0.577796 | 6.4:+52262684 | None:intergenic |
| CCAACAGCTACGACATCGAT+CGG | 0.588580 | 6.4:-52262798 | MS.gene05191:CDS |
| GGTGATGAAGACGAGGAGGA+CGG | 0.623893 | 6.4:+52262838 | None:intergenic |
| AACCTGCGGCGAAGGCGTGA+CGG | 0.631674 | 6.4:+52262675 | None:intergenic |
| GTTCGGAGACAACAGAGCGG+AGG | 0.635659 | 6.4:+52262734 | None:intergenic |
| AGCGGAGGCGATAGTCGATG+AGG | 0.674566 | 6.4:+52262749 | None:intergenic |
| GCGCGGTGGTGATGAAGACG+AGG | 0.682967 | 6.4:+52262831 | None:intergenic |
| CGGTGGTGATGAAGACGAGG+AGG | 0.690375 | 6.4:+52262834 | None:intergenic |
| TGATTGAATTGAGAAGTGTG+GGG | 0.704818 | 6.4:+52262864 | None:intergenic |
| TTGGAGAAGAATTTGCGCGG+TGG | 0.714981 | 6.4:+52262817 | None:intergenic |
| CTGTTGGAGAAGAATTTGCG+CGG | 0.716388 | 6.4:+52262814 | None:intergenic |
| GAAGTTCGGAGACAACAGAG+CGG | 0.757254 | 6.4:+52262731 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTATTTTTTTTTCAGTT+GGG | + | chr6.4:52261184-52261203 | None:intergenic | 15.0% |
| !!! | TTTTGTATTTTTTTTTCAGT+TGG | + | chr6.4:52261185-52261204 | None:intergenic | 15.0% |
| !! | CAATTATCTTCAGTTAAATA+TGG | + | chr6.4:52261773-52261792 | None:intergenic | 20.0% |
| !! | TTATATATGTCAATCCAAAA+AGG | + | chr6.4:52261304-52261323 | None:intergenic | 20.0% |
| !! | TTCAAATTATTATGTTGTTG+AGG | - | chr6.4:52262290-52262309 | MS.gene05191:intron | 20.0% |
| !!! | ATTTCTCTTATTGTGTTTTT+TGG | - | chr6.4:52261446-52261465 | MS.gene05191:intron | 20.0% |
| !!! | CTTTTTTCTTTTATATTCTG+TGG | - | chr6.4:52262558-52262577 | MS.gene05191:intron | 20.0% |
| !!! | TATATAAACAGACATGTTTT+TGG | - | chr6.4:52261375-52261394 | MS.gene05191:intron | 20.0% |
| !!! | TGTTTCTTTTGATCAAATTT+AGG | - | chr6.4:52261884-52261903 | MS.gene05191:intron | 20.0% |
| !!! | TTCTGATTATTTTTTGTTGT+AGG | - | chr6.4:52262791-52262810 | MS.gene05191:CDS | 20.0% |
| ! | AAAGAAACAAATCTTTCCAT+TGG | + | chr6.4:52261873-52261892 | None:intergenic | 25.0% |
| ! | AAAGAAATAGATAAGACTGA+AGG | - | chr6.4:52261577-52261596 | MS.gene05191:intron | 25.0% |
| ! | AAGCACAAACTTAAACATAT+TGG | + | chr6.4:52262533-52262552 | None:intergenic | 25.0% |
| ! | AAGTTCATATAAAAGTTTGC+AGG | - | chr6.4:52262201-52262220 | MS.gene05191:intron | 25.0% |
| ! | AATTGATATACCAAGAATTG+TGG | + | chr6.4:52262679-52262698 | None:intergenic | 25.0% |
| ! | ACAAATTGCATTACTATAGT+TGG | + | chr6.4:52261731-52261750 | None:intergenic | 25.0% |
| ! | ACATGAAAAAGTTACAGATA+TGG | + | chr6.4:52261075-52261094 | None:intergenic | 25.0% |
| ! | CAAGAAATCATGAATTCAAA+AGG | + | chr6.4:52261111-52261130 | None:intergenic | 25.0% |
| ! | CAATCATAAAAAACTGCATT+TGG | + | chr6.4:52261613-52261632 | None:intergenic | 25.0% |
| ! | CTACTTCAATTTACAATACA+AGG | - | chr6.4:52261956-52261975 | MS.gene05191:intron | 25.0% |
| ! | TCAATTTACAATACAAGGTT+GGG | - | chr6.4:52261961-52261980 | MS.gene05191:intron | 25.0% |
| ! | TGTTGTTCTGTTATATTGAT+TGG | - | chr6.4:52261519-52261538 | MS.gene05191:intron | 25.0% |
| ! | TTCAATTTACAATACAAGGT+TGG | - | chr6.4:52261960-52261979 | MS.gene05191:intron | 25.0% |
| !! | AAATCCTAACTCTGAAAAAT+TGG | + | chr6.4:52261221-52261240 | None:intergenic | 25.0% |
| !! | CTTTTGAATTCATGATTTCT+TGG | - | chr6.4:52261109-52261128 | MS.gene05191:intron | 25.0% |
| !! | TTTTGGTATTTAATAGCCAA+TGG | - | chr6.4:52261854-52261873 | MS.gene05191:intron | 25.0% |
| !!! | ATTTTTTGTTGTAGGCATTT+CGG | - | chr6.4:52262799-52262818 | MS.gene05191:CDS | 25.0% |
| !!! | CAGTTTTTTCTACATGAAAT+TGG | + | chr6.4:52262434-52262453 | None:intergenic | 25.0% |
| !!! | TTCTGTGTGATTTTTTTAGA+AGG | - | chr6.4:52261336-52261355 | MS.gene05191:intron | 25.0% |
| ACAACATCAATGACAAAATG+AGG | + | chr6.4:52262353-52262372 | None:intergenic | 30.0% | |
| ACATAAAGAAAAGATATGCG+AGG | + | chr6.4:52261049-52261068 | None:intergenic | 30.0% | |
| ATAACAGAACAACACTTCTT+TGG | + | chr6.4:52261513-52261532 | None:intergenic | 30.0% | |
| CAAACTTAAACATATTGGCA+TGG | + | chr6.4:52262528-52262547 | None:intergenic | 30.0% | |
| CTGAAAAATTGGAAAGAGAA+TGG | + | chr6.4:52261210-52261229 | None:intergenic | 30.0% | |
| CTTGAAAAGAACTCAATTGA+AGG | + | chr6.4:52262629-52262648 | None:intergenic | 30.0% | |
| GTAACATACTACATGAGTTA+CGG | - | chr6.4:52262867-52262886 | MS.gene05191:CDS | 30.0% | |
| TAAAAAACTGCATTTGGTTG+TGG | + | chr6.4:52261607-52261626 | None:intergenic | 30.0% | |
| TCATGTAGAAAAAACTGATG+TGG | - | chr6.4:52262437-52262456 | MS.gene05191:intron | 30.0% | |
| TGAGAGTTGTAATGCATTAT+AGG | - | chr6.4:52261702-52261721 | MS.gene05191:intron | 30.0% | |
| TGCGTATATATGAAAGTTCA+AGG | + | chr6.4:52261643-52261662 | None:intergenic | 30.0% | |
| TTAGTGAACCAAAACAGATA+AGG | + | chr6.4:52261821-52261840 | None:intergenic | 30.0% | |
| TTTGATTGAATTGAGAAGTG+TGG | + | chr6.4:52260835-52260854 | None:intergenic | 30.0% | |
| ! | ATTTTTCCTAAACGTTGCTT+TGG | - | chr6.4:52262653-52262672 | MS.gene05191:intron | 30.0% |
| ! | GTATGTTACTTCAATATTCC+AGG | + | chr6.4:52262856-52262875 | None:intergenic | 30.0% |
| ! | TAATGTTGCCTTATCTGTTT+TGG | - | chr6.4:52261810-52261829 | MS.gene05191:intron | 30.0% |
| ! | TTGATTGAATTGAGAAGTGT+GGG | + | chr6.4:52260834-52260853 | None:intergenic | 30.0% |
| !! | AAGTTTGTTGAATTTAACGC+AGG | - | chr6.4:52261277-52261296 | MS.gene05191:intron | 30.0% |
| !! | ACTCATTTTAATACCAAGCT+AGG | + | chr6.4:52261676-52261695 | None:intergenic | 30.0% |
| !! | AGTTTGTTGAATTTAACGCA+GGG | - | chr6.4:52261278-52261297 | MS.gene05191:intron | 30.0% |
| !! | CAAGTTAAAGTATTTTCTCC+AGG | + | chr6.4:52261417-52261436 | None:intergenic | 30.0% |
| !! | CAGGTAAAAAGTTCTAAGAA+TGG | - | chr6.4:52262220-52262239 | MS.gene05191:intron | 30.0% |
| !! | CTTTCCAATTTTTCAGAGTT+AGG | - | chr6.4:52261214-52261233 | MS.gene05191:intron | 30.0% |
| !! | GTCATTGTGTTTGATTTGTA+TGG | - | chr6.4:52261922-52261941 | MS.gene05191:intron | 30.0% |
| !!! | CTAATTCTCTGGTTTTGTTT+TGG | - | chr6.4:52261837-52261856 | MS.gene05191:intron | 30.0% |
| !!! | GTGTTTTTTGGACATTTGAT+TGG | - | chr6.4:52261458-52261477 | MS.gene05191:intron | 30.0% |
| AAGGCAACATTAGTCATTTG+TGG | + | chr6.4:52261802-52261821 | None:intergenic | 35.0% | |
| CATTCTTCAGCCAAAATCAA+TGG | + | chr6.4:52261548-52261567 | None:intergenic | 35.0% | |
| GAACAGAGAGTAATAAGCTT+TGG | + | chr6.4:52262331-52262350 | None:intergenic | 35.0% | |
| TCAGAGTTAGGATTTGAAGA+TGG | - | chr6.4:52261226-52261245 | MS.gene05191:intron | 35.0% | |
| TTGTGTGAACTTGGGTAAAT+AGG | + | chr6.4:52262832-52262851 | None:intergenic | 35.0% | |
| ! | GGTTTGTTTACTTGAAAACC+TGG | - | chr6.4:52261396-52261415 | MS.gene05191:intron | 35.0% |
| ! | TGATTGAATTGAGAAGTGTG+GGG | + | chr6.4:52260833-52260852 | None:intergenic | 35.0% |
| !!! | GTTTTGGTTCACTAATTCTC+TGG | - | chr6.4:52261826-52261845 | MS.gene05191:intron | 35.0% |
| !!! | TGATTGGAAGCCATTGATTT+TGG | - | chr6.4:52261535-52261554 | MS.gene05191:intron | 35.0% |
| ATTCCAGGATTGTGTGAACT+TGG | + | chr6.4:52262841-52262860 | None:intergenic | 40.0% | |
| CTGTGGTTCATGAATCAAAC+TGG | - | chr6.4:52262575-52262594 | MS.gene05191:intron | 40.0% | |
| TTCCAGGATTGTGTGAACTT+GGG | + | chr6.4:52262840-52262859 | None:intergenic | 40.0% | |
| ! | AATTTAACGCAGGGCCTTTT+TGG | - | chr6.4:52261287-52261306 | MS.gene05191:intron | 40.0% |
| ! | TGTCATGTGCTGTTATCTGT+GGG | - | chr6.4:52262110-52262129 | MS.gene05191:intron | 40.0% |
| !! | TGCTGCTGTTTGTGTTTTGT+GGG | - | chr6.4:52262136-52262155 | MS.gene05191:intron | 40.0% |
| ATATGCGAGGATGTAACCTG+CGG | + | chr6.4:52261036-52261055 | None:intergenic | 45.0% | |
| CATGGGATGAGAGAGAAGTT+CGG | + | chr6.4:52260980-52260999 | None:intergenic | 45.0% | |
| CTGTTGGAGAAGAATTTGCG+CGG | + | chr6.4:52260883-52260902 | None:intergenic | 45.0% | |
| GGAGTGGTCGACTGTTAATT+TGG | - | chr6.4:52262169-52262188 | MS.gene05191:intron | 45.0% | |
| TACCCAAGTTCACACAATCC+TGG | - | chr6.4:52262835-52262854 | MS.gene05191:CDS | 45.0% | |
| TTGTGGCCAAAGCAACGTTT+AGG | + | chr6.4:52262662-52262681 | None:intergenic | 45.0% | |
| ! | CTGTCATGTGCTGTTATCTG+TGG | - | chr6.4:52262109-52262128 | MS.gene05191:intron | 45.0% |
| ! | GTGTTTTGTGGGGACAGTTA+GGG | - | chr6.4:52262147-52262166 | MS.gene05191:intron | 45.0% |
| ! | GTTGCTTTGGCCACAATTCT+TGG | - | chr6.4:52262666-52262685 | MS.gene05191:intron | 45.0% |
| ! | TGTGTTTTGTGGGGACAGTT+AGG | - | chr6.4:52262146-52262165 | MS.gene05191:intron | 45.0% |
| ! | TGTTTTGTGGGGACAGTTAG+GGG | - | chr6.4:52262148-52262167 | MS.gene05191:intron | 45.0% |
| !! | CTGCTGCTGTTTGTGTTTTG+TGG | - | chr6.4:52262135-52262154 | MS.gene05191:intron | 45.0% |
| !! | GCTGCTGTTTGTGTTTTGTG+GGG | - | chr6.4:52262137-52262156 | MS.gene05191:intron | 45.0% |
| !! | GTCGACTGTTAATTTGGTGC+TGG | - | chr6.4:52262175-52262194 | MS.gene05191:intron | 45.0% |
| AAAAACGCAGACAGCAGCAC+AGG | + | chr6.4:52262047-52262066 | None:intergenic | 50.0% | |
| CAACAGCTACGACATCGATC+GGG | - | chr6.4:52260897-52260916 | MS.gene05191:intron | 50.0% | |
| CCAACAGCTACGACATCGAT+CGG | - | chr6.4:52260896-52260915 | MS.gene05191:intron | 50.0% | |
| CTGTTGTGAGCTGTTTGTGC+AGG | - | chr6.4:52262021-52262040 | MS.gene05191:intron | 50.0% | |
| GAAGTTCGGAGACAACAGAG+CGG | + | chr6.4:52260966-52260985 | None:intergenic | 50.0% | |
| GCACAAACAGCTCACAACAG+CGG | + | chr6.4:52262021-52262040 | None:intergenic | 50.0% | |
| GCACACAACACAACCTAGCT+TGG | - | chr6.4:52261660-52261679 | MS.gene05191:intron | 50.0% | |
| TGTCCAAAAACAGCCTCTGC+AGG | + | chr6.4:52262075-52262094 | None:intergenic | 50.0% | |
| TTGGAGAAGAATTTGCGCGG+TGG | + | chr6.4:52260880-52260899 | None:intergenic | 50.0% | |
| ! | CTCGACGAGGAGATGTTTTG+AGG | - | chr6.4:52261986-52262005 | MS.gene05191:intron | 50.0% |
| !!! | GTGCTGCTGTCTGCGTTTTT+TGG | - | chr6.4:52262047-52262066 | MS.gene05191:intron | 50.0% |
| CCGATCGATGTCGTAGCTGT+TGG | + | chr6.4:52260899-52260918 | None:intergenic | 55.0% | |
| GGTGATGAAGACGAGGAGGA+CGG | + | chr6.4:52260859-52260878 | None:intergenic | 55.0% | |
| !! | GCACCTGCAGAGGCTGTTTT+TGG | - | chr6.4:52262069-52262088 | MS.gene05191:intron | 55.0% |
| !!! | CGAGGAGATGTTTTGAGGCG+TGG | - | chr6.4:52261991-52262010 | MS.gene05191:intron | 55.0% |
| !!! | GCGTTTTTTGGCACCTGCAG+AGG | - | chr6.4:52262059-52262078 | MS.gene05191:intron | 55.0% |
| AAGGCGGCGATGGTTGGCAT+GGG | + | chr6.4:52260997-52261016 | None:intergenic | 60.0% | |
| ACAAGGTTGGGTGCTCGACG+AGG | - | chr6.4:52261973-52261992 | MS.gene05191:intron | 60.0% | |
| AGCGGAGGCGATAGTCGATG+AGG | + | chr6.4:52260948-52260967 | None:intergenic | 60.0% | |
| GAGGATGTAACCTGCGGCGA+AGG | + | chr6.4:52261030-52261049 | None:intergenic | 60.0% | |
| GTTCGGAGACAACAGAGCGG+AGG | + | chr6.4:52260963-52260982 | None:intergenic | 60.0% | |
| TGTGGGGACAGTTAGGGGAG+TGG | - | chr6.4:52262153-52262172 | MS.gene05191:intron | 60.0% | |
| ! | CGGTGGTGATGAAGACGAGG+AGG | + | chr6.4:52260863-52260882 | None:intergenic | 60.0% |
| ACGGTGAAGGCGGCGATGGT+TGG | + | chr6.4:52261003-52261022 | None:intergenic | 65.0% | |
| GAAGGCGGCGATGGTTGGCA+TGG | + | chr6.4:52260998-52261017 | None:intergenic | 65.0% | |
| ! | AACCTGCGGCGAAGGCGTGA+CGG | + | chr6.4:52261022-52261041 | None:intergenic | 65.0% |
| ! | CGAAGGCGTGACGGTGAAGG+CGG | + | chr6.4:52261013-52261032 | None:intergenic | 65.0% |
| ! | GCGCGGTGGTGATGAAGACG+AGG | + | chr6.4:52260866-52260885 | None:intergenic | 65.0% |
| CGTGACGGTGAAGGCGGCGA+TGG | + | chr6.4:52261007-52261026 | None:intergenic | 70.0% | |
| ! | CGGCGAAGGCGTGACGGTGA+AGG | + | chr6.4:52261016-52261035 | None:intergenic | 70.0% |
| CACCGTCACGCCTTCGCCGC+AGG | - | chr6.4:52261017-52261036 | MS.gene05191:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 52260814 | 52262902 | 52260814 | ID=MS.gene05191 |
| chr6.4 | mRNA | 52260814 | 52262902 | 52260814 | ID=MS.gene05191.t1;Parent=MS.gene05191 |
| chr6.4 | exon | 52262678 | 52262902 | 52262678 | ID=MS.gene05191.t1.exon1;Parent=MS.gene05191.t1 |
| chr6.4 | CDS | 52262678 | 52262902 | 52262678 | ID=cds.MS.gene05191.t1;Parent=MS.gene05191.t1 |
| chr6.4 | exon | 52260814 | 52260903 | 52260814 | ID=MS.gene05191.t1.exon2;Parent=MS.gene05191.t1 |
| chr6.4 | CDS | 52260814 | 52260903 | 52260814 | ID=cds.MS.gene05191.t1;Parent=MS.gene05191.t1 |
| Gene Sequence |
| Protein sequence |
