AlfalfaGEDB | MS.gene70157

M. sativa cultivar XinJiangDaYe / MS.gene70157

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70157.t1	XP_003630385.1	99.1	585	5	0	1	585	13	597	1.10E-289	1005.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70157.t1	Q8W4S5	71.9	587	161	4	1	585	30	614	8.0e-196	684.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70157.t1	B5AGY8	99.1	585	5	0	1	585	13	597	8.0e-290	1005.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene004276	MS.gene70157	PPI
MS.gene01581	MS.gene70157	PPI
MS.gene024707	MS.gene70157	PPI
MS.gene035805	MS.gene70157	PPI
MS.gene045131	MS.gene70157	PPI
MS.gene052190	MS.gene70157	PPI
MS.gene061793	MS.gene70157	PPI
MS.gene21942	MS.gene70157	PPI
MS.gene22281	MS.gene70157	PPI
MS.gene57306	MS.gene70157	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70157.t1	MTR_8g095030	98.632	585	8	0	1	585	13	597	0.0	1197
MS.gene70157.t1	MTR_8g095030	98.753	481	6	0	1	481	13	493	0.0	983
MS.gene70157.t1	MTR_8g090140	58.010	593	216	7	21	585	19	606	0.0	676
MS.gene70157.t1	MTR_3g087060	56.240	601	230	7	11	585	16	609	0.0	660
MS.gene70157.t1	MTR_3g087060	56.780	590	222	7	22	585	16	598	0.0	659
MS.gene70157.t1	MTR_3g087060	57.143	497	183	5	11	482	16	507	0.0	552
MS.gene70157.t1	MTR_2g008360	48.691	573	263	7	6	553	20	586	1.85e-171	500
MS.gene70157.t1	MTR_2g008390	47.179	585	278	7	5	564	19	597	2.40e-171	500
MS.gene70157.t1	MTR_1g097160	46.179	615	264	9	22	585	29	627	2.89e-169	495
MS.gene70157.t1	MTR_7g018200	45.395	608	279	9	19	585	31	626	3.10e-167	490

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70157.t1	AT5G63710	68.825	587	179	4	1	585	30	614	0.0	816
MS.gene70157.t1	AT5G63710	68.825	587	179	4	1	585	31	615	0.0	816
MS.gene70157.t1	AT5G63710	69.603	579	172	4	9	585	3	579	0.0	813
MS.gene70157.t1	AT5G63710	69.603	579	172	4	9	585	3	579	0.0	813
MS.gene70157.t1	AT5G65240	56.126	604	233	8	9	585	9	607	0.0	644
MS.gene70157.t1	AT5G65240	56.093	599	231	8	9	580	9	602	0.0	640
MS.gene70157.t1	AT5G10290	54.455	606	245	7	6	585	13	613	0.0	638
MS.gene70157.t1	AT5G10290	54.455	606	245	7	6	585	13	613	0.0	638
MS.gene70157.t1	AT1G71830	47.227	631	269	12	6	585	8	625	0.0	525
MS.gene70157.t1	AT4G33430	47.306	594	276	9	1	565	6	591	1.65e-172	503

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Find 119 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTACTTAGAGAAAAT+AGG	0.371996	4.1:+7654432	MS.gene70157:CDS
AAAATCTGATGAGAAAGGCT+TGG	0.489875	4.1:+7653733	MS.gene70157:CDS
AAAGCTACACGCTTCCTTGT+TGG	0.420125	4.1:-7653761	None:intergenic
AAATAATCAAATAACAGATT+GGG	0.469030	4.1:+7651797	MS.gene70157:CDS
AAATAGGCTAGAGGACATAG+TGG	0.593147	4.1:+7654448	MS.gene70157:CDS
AACAGGGATCTTTCTTCAAA+TGG	0.387369	4.1:+7652632	MS.gene70157:intron
AACTGAGTTTCAAGACAACA+AGG	0.649165	4.1:-7651005	None:intergenic
AAGCTAGAGCCACAATCAAG+AGG	0.617693	4.1:-7652810	None:intergenic
AAGGCTTGGATTGGCCAACA+AGG	0.617925	4.1:+7653747	MS.gene70157:CDS
AAGTAATGCAACTTGAAGAA+TGG	0.473415	4.1:-7654510	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTTAGTCGCACTGTTAA+AGG	-	chr4.1:7654348-7654367	None:intergenic	30.0%
AAGTAATGCAACTTGAAGAA+TGG	-	chr4.1:7654513-7654532	None:intergenic	30.0%
AATCCTTGTATATCCTTTCA+TGG	+	chr4.1:7653577-7653596	MS.gene70157:CDS	30.0%
ACCATTGGATCAATATCATA+TGG	-	chr4.1:7654319-7654338	None:intergenic	30.0%
AGAAATCTCCTAAGACTAAT+TGG	+	chr4.1:7653530-7653549	MS.gene70157:CDS	30.0%
AGAATGGAAAAAGTTGTATC+AGG	-	chr4.1:7653640-7653659	None:intergenic	30.0%
ATCAAAGATCCTGATATAGA+AGG	+	chr4.1:7651033-7651052	MS.gene70157:CDS	30.0%
ATGGTGTCTATATGTAAAGA+TGG	-	chr4.1:7653075-7653094	None:intergenic	30.0%
ATTCATCGATGTTGTTATCA+GGG	+	chr4.1:7654181-7654200	MS.gene70157:intron	30.0%
ATTTCAATCTGGTAATTGAG+GGG	-	chr4.1:7652033-7652052	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	7650982	7654745	7650982	ID=MS.gene70157
chr4.1	mRNA	7650982	7654745	7650982	ID=MS.gene70157.t1;Parent=MS.gene70157
chr4.1	exon	7650982	7651054	7650982	ID=MS.gene70157.t1.exon1;Parent=MS.gene70157.t1
chr4.1	CDS	7650982	7651054	7650982	ID=cds.MS.gene70157.t1;Parent=MS.gene70157.t1
chr4.1	exon	7651757	7651889	7651757	ID=MS.gene70157.t1.exon2;Parent=MS.gene70157.t1
chr4.1	CDS	7651757	7651889	7651757	ID=cds.MS.gene70157.t1;Parent=MS.gene70157.t1
chr4.1	exon	7651994	7652065	7651994	ID=MS.gene70157.t1.exon3;Parent=MS.gene70157.t1
chr4.1	CDS	7651994	7652065	7651994	ID=cds.MS.gene70157.t1;Parent=MS.gene70157.t1
chr4.1	exon	7652383	7652526	7652383	ID=MS.gene70157.t1.exon4;Parent=MS.gene70157.t1
chr4.1	CDS	7652383	7652526	7652383	ID=cds.MS.gene70157.t1;Parent=MS.gene70157.t1
chr4.1	exon	7652637	7652702	7652637	ID=MS.gene70157.t1.exon5;Parent=MS.gene70157.t1
chr4.1	CDS	7652637	7652702	7652637	ID=cds.MS.gene70157.t1;Parent=MS.gene70157.t1
chr4.1	exon	7652797	7652867	7652797	ID=MS.gene70157.t1.exon6;Parent=MS.gene70157.t1
chr4.1	CDS	7652797	7652867	7652797	ID=cds.MS.gene70157.t1;Parent=MS.gene70157.t1
chr4.1	exon	7652994	7653137	7652994	ID=MS.gene70157.t1.exon7;Parent=MS.gene70157.t1
chr4.1	CDS	7652994	7653137	7652994	ID=cds.MS.gene70157.t1;Parent=MS.gene70157.t1
chr4.1	exon	7653288	7653629	7653288	ID=MS.gene70157.t1.exon8;Parent=MS.gene70157.t1
chr4.1	CDS	7653288	7653629	7653288	ID=cds.MS.gene70157.t1;Parent=MS.gene70157.t1
chr4.1	exon	7653729	7654123	7653729	ID=MS.gene70157.t1.exon9;Parent=MS.gene70157.t1
chr4.1	CDS	7653729	7654123	7653729	ID=cds.MS.gene70157.t1;Parent=MS.gene70157.t1
chr4.1	exon	7654428	7654745	7654428	ID=MS.gene70157.t1.exon10;Parent=MS.gene70157.t1
chr4.1	CDS	7654428	7654745	7654428	ID=cds.MS.gene70157.t1;Parent=MS.gene70157.t1

Gene Sequence

>MS.gene70157

ATGTTGATGAGGTGGTTCATATTCCTTGTTGTCTTGAAACTCAGTTCTGCAATCAAAGATCCTGATATAGAAGGTGTGGTGAATTTTGATGTTATTCATTCTTTTCTTTACATGCTACTATTGTTTGAATTCAATTTTGACTTCCTGTGCTACTGTGGAATGAATTTTAATCTATCCTATCAAATGAAAATCATGTGTCAAACATGTTTGATCAACGATCAACCACAGATAATTATAATGATGTGTTAGAATCAGTTAGAAACTGTTAAAGCTAGTTGCAAGTTGGTTTCATGATACAATCTTTATAAACTCTTATCAAGTAATATTTATTTTCATTGTGGGACTTGGTTTTTCTCAATACACACTCAGACGCTCAACACTACTATTGGTGTATTGATAATATGGTGGGGGACACAAATTGGTTGGCTTTGATACTACATTAGTTTTTTATACGGAGTCTAACTTATCCTTACAAAATCGACTTGCAACTACCTCTAACAATCTCCGACTAATTCTAACATGATGTGGCACTATCTTCTTTATTGTTAGTGTAAAATTATTTAACACTTGAATTACTGCAACTGTATCTAGCTTTGATAAATTTGACATTTAGGTTAGATAACTACTATTTTAGAATTATTGTTTTCTTATATACCATAAGTTTTACAATGTTATTCTCTGGTTTGTGCATAACTTCAATTCTTATTTGACAATAATTCTCTAATATATATCAACACTCTTAATGATTCTGAAACATTTGGCCTAATATTTCCAGGTGAAGCTCTGCTTGATCTTTTGAATTACCTTAATGATTCAAATAATCAAATAACAGATTGGGACAGTCATTTAGTGAGCCCATGTTTCAGTTGGTCACATGTCACTTGTAGAAATGGACATGTCATATCTCTGTAAGTTCATCCATCACATAAAGTACAAAATGTTTCTTACTACTATTTTCATAATCTAGTTTTTTCTTCATATTCTCAAATATTTTTCGCTAATCAATCTACAGGACCCTGGCTTCTATTGGATTTTCTGGAACACTTTCCCCCTCAATTACCAGATTGAAATATTTGGTTAACTTGTAAGTCTCATTACAATTAGTTGACATTAATTAGATTGGCAGCTTATCCAACTAATGAACTATAGCAGCATGATTCCATAACAATTAAAGTAGTGTTTGGATTTTACTTTTCTTAACCATACAACGAAGAGTTTAATTTTGATCGACTGCCAGTGTAAAAAGCTTTACACTGCCACAAAATTACAATCATATTTGTGACATTAGAAGTAATTATGATTAAAGTTAAATATTTTTAATGATCTGACGATTATGATTGATGACTGGTGAGGTAGTTTTTCCTTCCTGCTAGCATGTCTTAAACTATAATCTTGATGCAGGGAATTGCAGAACAACAATCTTTCAGGCCCCTTACCTGATTACATTGCCAACTTGACATACCTGCAATATCTGAATCTTGCTAACAATAATTTTAATGGCTCTATACCGGTTAGTTGGGGTCAACTATCCAGTCTCAAGAATGTGTGAGGCTTCATTTTCAATTTCTTATATGCTTCTTCTATGGTTTGTTTCCCTATGCTTCCTATTCTGATATTGAATATGCTATAATTGATTTGTGTTTTTCTTTTAACAGGGATCTTTCTTCAAATGGTCTTACTGGAACTATCCCGACACAACTCTTTTCAGTTCCAATGTTTAAGTATTAATACTTATATATTTATGGGTATTTTCATTTAGTAATAGATAATATTGTATCATGTATTCTCTTGATTTATGATTTTTTTTACTTTCAGCTTTTCAGATACGCCTCTTGATTGTGGCTCTAGCTTCGACCAGCCTTGTGTTTCTAAATCTGATCATCCAGGTTTGATTGGTTAACTCAAAACTTAAAACATGTGATTAAGAAAGTATAATTAACCTTGAAAAATATGAACTACTGAAAAAATTGTTAGGTAGAAGCTACCTAAAGTTTACCTCTCCTTTGCTGCAGCTTCAACCAACAAATCAAAATTGGCAAAAGCCATGCCTTATGCGAGTTGCGGTGCATTTGTGCTTCTGTGTCTTGGAGCCATCTTTACATATAGACACCATCAAAAGATCAGACACAAAAGTGATGTCTTTGTTGATGTTTTAGGTAATTTTTCCTTTTTTTTGTCAAATTACTTTGTCTCAGCATGACATAATAAGGCCTAGGAGGAATTACCTTTCTTCTGTTTTATATAAAACATAAGAAACATTTTCAAAACTCCATCGGAAAGTAAGTAATATATGATAAATTTTACAGGTGAAGATGAGAGCAAAATTTCTTTTGGACAATTAAGAAGATTTTCTTTGCGCGAACTCCAAATCGCAACTAAAAGTTTCAGCGAAAGCAATGTAATTGGCCAAGGTGGATTTGGAAAAGTGTACAAAGGAGTACTCTCAGATAACACAAAAATCGCTGTGAAACGCCTCACCGATTATCATAATCCTGGTGGAGAGGCTGCATTCGAGAGAGAAGTTGATCTCATTAGTGTTGCAGTTCATAGAAATCTCCTAAGACTAATTGGATTCTGTACAACATCAACTGAAAGAATCCTTGTATATCCTTTCATGGAAAATCTAAGTGTAGCATATCAACTAAGAGGTAAAAACCTGATACAACTTTTTCCATTCTCTGATCTATTTCTTTGTGAGAGTTTTGGGCTCATTGCTTAATATTATTGACTTCTCTATGCTGTTTTAGATTTAAAATCTGATGAGAAAGGCTTGGATTGGCCAACAAGGAAGCGTGTAGCTTTTGGTACGGCGCACGGTCTAGAATATCTACATGAGCAATGCAATCCGAAGATAATTCACCGTGATCTAAAGGCTGCAAATATCCTTCTAGATGATGAGTTTGAACCTGTTCTAGGTGATTTTGGACTAGCCAAGCTGGTTGATGCAAGGATGACTCATGTTACCACTCAAGTGCGCGGTACAATGGGTCATATTGCCCCGGAATATTTGTCAACCGGAAAATCATCAGAGAAGACAGATGTTTTTGGATATGGCATAACGCTTCTTGAACTAATCACTGGTCAGCGTGCAATTGACCTCTCTCGGCTCGAAGAGGAGGAGGATGTTCTTTTGATTGATCATGTAACATTTTCTATCTACTTCATCCATTAATTGCTTCGTTAATTTTGTTCAGTGGTCATTCATCGATGTTGTTATCAGGGGTTTAGAGTTTATACAGTCACACAGTTGTGGATCTCGGCAGTTATATGCAGATCAAAATACTCATATTTCAATATGTATTTTCAAGCTTATTTGGTGAAGTAAAAATATAAGCCATATGATATTGATCCAATGGTCGAGATCCTTTAACAGTGCGACTAAATTTTTTCCCCAATATAATAATTTTCCTCTAAGGATATGATGTTAATTTGAATTTATGAAACAGGTAAAAAATCTACTTAGAGAAAATAGGCTAGAGGACATAGTGGATAACAATTTGGAGACTTATGATCCAAAAGAAGCTGAAACCATTCTTCAAGTTGCATTACTTTGCACACAAGGCTATCCAGAGGATCGTCCGACAATGTCCGAGGTGGTAAAAATGTTGCAGGGAGTAGGGTTGGCAGATAGATGGGCTGACTGGAAGCAACTTGAAGAGGCTAGAAATCAAGAAATAGAATTATCATTCATGACTCACCAATTTCCTTGGAGTGATGAGTCTACTCTTGATCAAGAAGCTATACAACTTTCCAGAGCAAGATAG

Protein sequence

>MS.gene70157.t1

MLMRWFIFLVVLKLSSAIKDPDIEGEALLDLLNYLNDSNNQITDWDSHLVSPCFSWSHVTCRNGHVISLTLASIGFSGTLSPSITRLKYLVNLELQNNNLSGPLPDYIANLTYLQYLNLANNNFNGSIPVSWGQLSSLKNVDLSSNGLTGTIPTQLFSVPMFNFSDTPLDCGSSFDQPCVSKSDHPASTNKSKLAKAMPYASCGAFVLLCLGAIFTYRHHQKIRHKSDVFVDVLGEDESKISFGQLRRFSLRELQIATKSFSESNVIGQGGFGKVYKGVLSDNTKIAVKRLTDYHNPGGEAAFEREVDLISVAVHRNLLRLIGFCTTSTERILVYPFMENLSVAYQLRDLKSDEKGLDWPTRKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEPVLGDFGLAKLVDARMTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELITGQRAIDLSRLEEEEDVLLIDHVKNLLRENRLEDIVDNNLETYDPKEAETILQVALLCTQGYPEDRPTMSEVVKMLQGVGLADRWADWKQLEEARNQEIELSFMTHQFPWSDESTLDQEAIQLSRAR