Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70268.t1 | RHN43062.1 | 64.6 | 297 | 63 | 5 | 1 | 293 | 1 | 259 | 9.60E-19 | 104.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70268.t1 | A0A396GPN1 | 64.6 | 297 | 63 | 5 | 1 | 293 | 1 | 259 | 6.9e-19 | 104.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049227 | MS.gene70268 | 0.801753 | 7.76E-49 | -1.69E-46 |
| MS.gene050238 | MS.gene70268 | 0.812482 | 4.15E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene70268 | 0.807175 | 5.75E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70268.t1 | MTR_8g092670 | 70.659 | 167 | 21 | 6 | 132 | 298 | 17 | 155 | 7.15e-56 | 178 |
| MS.gene70268.t1 | MTR_8g092675 | 89.744 | 78 | 4 | 1 | 1 | 74 | 1 | 78 | 2.69e-39 | 133 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAGCTGCAATATCATTT+TGG | 0.194942 | 4.1:-8908232 | None:intergenic |
| GTGTCTTCTTTAACCTGTTC+TGG | 0.237397 | 4.1:-8904222 | None:intergenic |
| ACAAGAATCTACAGTTATTA+AGG | 0.256810 | 4.1:+8908055 | MS.gene70268:CDS |
| TCTTTAACCTGTTCTGGTTC+AGG | 0.262282 | 4.1:-8904216 | None:intergenic |
| GTAGATTCTTGTTCTGTAGA+TGG | 0.312343 | 4.1:-8908044 | None:intergenic |
| ATTAGAAACAGAGAAACTTT+TGG | 0.329552 | 4.1:+8907935 | MS.gene70268:CDS |
| AATTTCGTTAACGTCAAGAT+TGG | 0.387445 | 4.1:-8904298 | None:intergenic |
| GGAGATTCATGTTTCAAAGT+TGG | 0.408662 | 4.1:-8907978 | None:intergenic |
| TTCACAACAGTTTCTTCAGC+TGG | 0.423038 | 4.1:-8908203 | None:intergenic |
| TTCTGTCTTCACAATCTCTT+CGG | 0.442450 | 4.1:-8908129 | None:intergenic |
| TTCTCTTCTATGCTAGATGT+TGG | 0.446295 | 4.1:-8908461 | None:intergenic |
| AAACCAAAGGTTACGAAGGA+TGG | 0.459100 | 4.1:+8904174 | MS.gene70268:CDS |
| ATTTCGTTAACGTCAAGATT+GGG | 0.465563 | 4.1:-8904297 | None:intergenic |
| GAAGGCACCTGAACCAGAAC+AGG | 0.477708 | 4.1:+8904209 | MS.gene70268:CDS |
| ACTGTCAGCATCAGAAGCCT+TGG | 0.483191 | 4.1:-8908504 | None:intergenic |
| ATCACTTTCTCCGCAGGTGG+AGG | 0.497231 | 4.1:-8908389 | None:intergenic |
| ATCTGTGGAGAACAAAATAG+TGG | 0.502395 | 4.1:+8908436 | MS.gene70268:CDS |
| AAGCTTGTTGTTCAACAAAG+AGG | 0.514250 | 4.1:+8904356 | MS.gene70268:CDS |
| AGTTATTAAGGTTGATGTTG+AGG | 0.515319 | 4.1:+8908067 | MS.gene70268:CDS |
| AACCAAAGGTTACGAAGGAT+GGG | 0.516776 | 4.1:+8904175 | MS.gene70268:CDS |
| TCAATCACTTTCTCCGCAGG+TGG | 0.530836 | 4.1:-8908392 | None:intergenic |
| ACTTCAATCACTTTCTCCGC+AGG | 0.536439 | 4.1:-8908395 | None:intergenic |
| TTTAACAAATGCAGAATCTG+TGG | 0.554816 | 4.1:+8908421 | MS.gene70268:CDS |
| AGAAGGTGAGAAAGCTTCAG+AGG | 0.560763 | 4.1:+8908286 | MS.gene70268:CDS |
| GACTATTCTCATTGAAAATG+TGG | 0.591672 | 4.1:+8908361 | MS.gene70268:CDS |
| ACCAAAGGTTACGAAGGATG+GGG | 0.594184 | 4.1:+8904176 | MS.gene70268:CDS |
| TCATGTAGAGCATATATCCA+AGG | 0.613863 | 4.1:+8908487 | MS.gene70268:CDS |
| GAATGAAGATACAATTACAA+AGG | 0.619093 | 4.1:+8907860 | MS.gene70268:intron |
| TATTCTCATTGAAAATGTGG+TGG | 0.622958 | 4.1:+8908364 | MS.gene70268:CDS |
| CACTATTGAAACCAAAGTGG+AGG | 0.627237 | 4.1:+8904242 | MS.gene70268:CDS |
| TGCGGAGAAAGTGATTGAAG+TGG | 0.637663 | 4.1:+8908397 | MS.gene70268:CDS |
| AACTAAACCAAAGGTTACGA+AGG | 0.648382 | 4.1:+8904170 | MS.gene70268:CDS |
| ACAGATTCAGAAACACAAGA+AGG | 0.653137 | 4.1:+8908269 | MS.gene70268:CDS |
| AGACACTATTGAAACCAAAG+TGG | 0.653896 | 4.1:+8904239 | MS.gene70268:CDS |
| GGGTTGTGCAACTAAACCAA+AGG | 0.654419 | 4.1:+8904161 | MS.gene70268:CDS |
| TGTGGTGGTTCCTCCACCTG+CGG | 0.658290 | 4.1:+8908379 | MS.gene70268:CDS |
| CAAGAGCAATTGTTGCAGAG+TGG | 0.686009 | 4.1:+8904273 | MS.gene70268:CDS |
| CCAAAGGTTACGAAGGATGG+GGG | 0.695094 | 4.1:+8904177 | MS.gene70268:CDS |
| CTGCGATTGAAAGAAATGGG+GGG | 0.733842 | 4.1:+8904141 | None:intergenic |
| TATTGCAGCTGAAGTAACTG+TGG | 0.741891 | 4.1:+8908241 | MS.gene70268:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATTTAAAAAATATCAAA+CGG | + | chr4.1:8906798-8906817 | MS.gene70268:intron | 10.0% |
| !! | TCATATTATTAAAATAGATA+TGG | + | chr4.1:8907233-8907252 | MS.gene70268:intron | 10.0% |
| !!! | CATTATTTATTTGTTAAAAA+GGG | - | chr4.1:8905941-8905960 | None:intergenic | 10.0% |
| !!! | TCATTATTTATTTGTTAAAA+AGG | - | chr4.1:8905942-8905961 | None:intergenic | 10.0% |
| !! | AAAAAAAATGTAAACAGATA+TGG | - | chr4.1:8907046-8907065 | None:intergenic | 15.0% |
| !! | AAAAAAATGTAAACAGATAT+GGG | - | chr4.1:8907045-8907064 | None:intergenic | 15.0% |
| !! | AAATAAAAGGAATATTATCA+TGG | - | chr4.1:8906224-8906243 | None:intergenic | 15.0% |
| !! | ATTATTAAAATAGATATGGT+TGG | + | chr4.1:8907237-8907256 | MS.gene70268:intron | 15.0% |
| !! | TCTAACAAAAATTAAAACAT+TGG | + | chr4.1:8906525-8906544 | MS.gene70268:intron | 15.0% |
| !!! | AAACCTTTTTTTTTTTTCAT+AGG | + | chr4.1:8904534-8904553 | MS.gene70268:intron | 15.0% |
| !!! | AACCAATTAAATTTGTTATT+TGG | + | chr4.1:8906097-8906116 | MS.gene70268:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGTGG+TGG | + | chr4.1:8906663-8906682 | MS.gene70268:intron | 15.0% |
| !! | AACAAAAATTAAAACATTGG+CGG | + | chr4.1:8906528-8906547 | MS.gene70268:intron | 20.0% |
| !! | ATATGAAGTCACAATATTTA+AGG | - | chr4.1:8905360-8905379 | None:intergenic | 20.0% |
| !! | CATAAATTAAATGTAATGCA+TGG | + | chr4.1:8906364-8906383 | MS.gene70268:intron | 20.0% |
| !! | GAAATTCTTAAAATTGATCT+TGG | + | chr4.1:8904841-8904860 | MS.gene70268:intron | 20.0% |
| !! | GTATGAAAATGAGTTTATAT+GGG | + | chr4.1:8905108-8905127 | MS.gene70268:intron | 20.0% |
| !! | TTAGTTGTTGAACTATAAAA+TGG | - | chr4.1:8907333-8907352 | None:intergenic | 20.0% |
| !!! | ACTAAATTTTTTTCATTCAG+AGG | + | chr4.1:8907660-8907679 | MS.gene70268:intron | 20.0% |
| !!! | CAATTAAATTTGTTATTTGG+CGG | + | chr4.1:8906100-8906119 | MS.gene70268:intron | 20.0% |
| !!! | GTTCAAATCACTTTTTAAAT+TGG | + | chr4.1:8906770-8906789 | MS.gene70268:intron | 20.0% |
| !!! | GTTGTGAACTTTAATTATTT+TGG | + | chr4.1:8905618-8905637 | MS.gene70268:intron | 20.0% |
| !!! | TTACTTAGAAGTCAATTTTA+AGG | + | chr4.1:8907497-8907516 | MS.gene70268:intron | 20.0% |
| !!! | TTTGTTTTTTTCATTTTGAG+TGG | - | chr4.1:8907889-8907908 | None:intergenic | 20.0% |
| ! | AAAATGTCCTAATGTATGTT+TGG | + | chr4.1:8904670-8904689 | MS.gene70268:intron | 25.0% |
| ! | AAATGAAAAAAACAAAGCTG+AGG | + | chr4.1:8907893-8907912 | MS.gene70268:CDS | 25.0% |
| ! | AACAAGTAATGTGATAAAAG+AGG | - | chr4.1:8907124-8907143 | None:intergenic | 25.0% |
| ! | AACTCGTTTAAATGTATATG+TGG | + | chr4.1:8904627-8904646 | MS.gene70268:intron | 25.0% |
| ! | ACAAAAGAAAAAATTCACCA+AGG | - | chr4.1:8905502-8905521 | None:intergenic | 25.0% |
| ! | ACAAGAATCTACAGTTATTA+AGG | + | chr4.1:8908055-8908074 | MS.gene70268:CDS | 25.0% |
| ! | AGAATCTTCGAAAACAAATT+AGG | - | chr4.1:8905653-8905672 | None:intergenic | 25.0% |
| ! | CGCCAAATAACAAATTTAAT+TGG | - | chr4.1:8906102-8906121 | None:intergenic | 25.0% |
| ! | GAATGAAGATACAATTACAA+AGG | + | chr4.1:8907860-8907879 | MS.gene70268:intron | 25.0% |
| ! | GGTATGAAAATGAGTTTATA+TGG | + | chr4.1:8905107-8905126 | MS.gene70268:intron | 25.0% |
| ! | GTAAATTTGTGAAGTTAACA+TGG | - | chr4.1:8905461-8905480 | None:intergenic | 25.0% |
| ! | GTTAAAATGAGATTCATACA+TGG | - | chr4.1:8907812-8907831 | None:intergenic | 25.0% |
| ! | GTTTAAATGTATATGTGGAT+TGG | + | chr4.1:8904632-8904651 | MS.gene70268:intron | 25.0% |
| ! | GTTTGAATATGACTATAAGA+GGG | + | chr4.1:8905898-8905917 | MS.gene70268:intron | 25.0% |
| ! | TACCAAATTTGGGAAATAAA+AGG | - | chr4.1:8906237-8906256 | None:intergenic | 25.0% |
| ! | TATAATAACGACAAGAAAAG+TGG | - | chr4.1:8905996-8906015 | None:intergenic | 25.0% |
| ! | TGAAAATTTAGTAGACACAA+GGG | + | chr4.1:8906597-8906616 | MS.gene70268:intron | 25.0% |
| ! | TGTAGGATTATGAAACTAAA+TGG | - | chr4.1:8905558-8905577 | None:intergenic | 25.0% |
| ! | TTGAAAATTTAGTAGACACA+AGG | + | chr4.1:8906596-8906615 | MS.gene70268:intron | 25.0% |
| ! | TTGAATCATTGACAAAGAAA+AGG | + | chr4.1:8906304-8906323 | MS.gene70268:intron | 25.0% |
| ! | TTTGAATATGACTATAAGAG+GGG | + | chr4.1:8905899-8905918 | MS.gene70268:intron | 25.0% |
| !! | ATTAGAAACAGAGAAACTTT+TGG | + | chr4.1:8907935-8907954 | MS.gene70268:CDS | 25.0% |
| !! | TATTGATATGAAGTATCCAT+CGG | + | chr4.1:8907572-8907591 | MS.gene70268:intron | 25.0% |
| !! | TGGTAAAATAGTTTAAAGCA+GGG | + | chr4.1:8904861-8904880 | MS.gene70268:intron | 25.0% |
| !! | TTGGTAAAATAGTTTAAAGC+AGG | + | chr4.1:8904860-8904879 | MS.gene70268:intron | 25.0% |
| !!! | ACTTTTTCAACTACCAAATT+TGG | - | chr4.1:8906248-8906267 | None:intergenic | 25.0% |
| !!! | CTTTTTCAACTACCAAATTT+GGG | - | chr4.1:8906247-8906266 | None:intergenic | 25.0% |
| !!! | GAACTTTAATTATTTTGGCA+AGG | + | chr4.1:8905623-8905642 | MS.gene70268:intron | 25.0% |
| !!! | GATGATTTTTCTAGTTTGAT+TGG | - | chr4.1:8908338-8908357 | None:intergenic | 25.0% |
| !!! | TCTCTATTTTTTGTGTATGT+TGG | + | chr4.1:8904457-8904476 | MS.gene70268:intron | 25.0% |
| !!! | TTCCTTTTATTTCCCAAATT+TGG | + | chr4.1:8906232-8906251 | MS.gene70268:intron | 25.0% |
| AAAACTGTTGTCCAAAAAAG+GGG | - | chr4.1:8906564-8906583 | None:intergenic | 30.0% | |
| AAAGAGCAATTGTCATTACT+TGG | - | chr4.1:8906735-8906754 | None:intergenic | 30.0% | |
| AAAGTCATTACGACTAAACA+TGG | - | chr4.1:8905334-8905353 | None:intergenic | 30.0% | |
| AACGGTAACTAACTATTGTT+CGG | + | chr4.1:8906816-8906835 | MS.gene70268:intron | 30.0% | |
| AATATCAGATTCTGACATCA+AGG | - | chr4.1:8906971-8906990 | None:intergenic | 30.0% | |
| AATGGTGTGTAATTAAGGAA+AGG | + | chr4.1:8906137-8906156 | MS.gene70268:intron | 30.0% | |
| AATTCCTCCAAACATACATT+AGG | - | chr4.1:8904680-8904699 | None:intergenic | 30.0% | |
| AATTTCGTTAACGTCAAGAT+TGG | - | chr4.1:8904301-8904320 | None:intergenic | 30.0% | |
| AGATAGTAGATTGGAATGTT+TGG | - | chr4.1:8906998-8907017 | None:intergenic | 30.0% | |
| ATACACTCTCACTATTGATA+CGG | + | chr4.1:8905209-8905228 | MS.gene70268:intron | 30.0% | |
| ATACATGGATAGAATTTGTG+TGG | - | chr4.1:8907797-8907816 | None:intergenic | 30.0% | |
| ATAGCGGTTAACAAAATCAA+TGG | - | chr4.1:8905759-8905778 | None:intergenic | 30.0% | |
| ATTAAGACAATTGCTAGAGT+AGG | - | chr4.1:8905437-8905456 | None:intergenic | 30.0% | |
| ATTATATGATCACCCGATAT+GGG | + | chr4.1:8905025-8905044 | MS.gene70268:intron | 30.0% | |
| ATTTCGTTAACGTCAAGATT+GGG | - | chr4.1:8904300-8904319 | None:intergenic | 30.0% | |
| CAAATAATGGTTGAGCTTAT+AGG | + | chr4.1:8907287-8907306 | MS.gene70268:intron | 30.0% | |
| CGTTTGAATATGACTATAAG+AGG | + | chr4.1:8905897-8905916 | MS.gene70268:intron | 30.0% | |
| CTCAATTAAGTTAGACTAGT+TGG | - | chr4.1:8907456-8907475 | None:intergenic | 30.0% | |
| GAAAAAAATTTAGTTGCGAG+AGG | - | chr4.1:8907654-8907673 | None:intergenic | 30.0% | |
| GAAAACTGTTGTCCAAAAAA+GGG | - | chr4.1:8906565-8906584 | None:intergenic | 30.0% | |
| GAAAATTTAGTAGACACAAG+GGG | + | chr4.1:8906598-8906617 | MS.gene70268:intron | 30.0% | |
| GACTATTCTCATTGAAAATG+TGG | + | chr4.1:8908361-8908380 | MS.gene70268:CDS | 30.0% | |
| GGGCCTATGAAAAAAAAAAA+AGG | - | chr4.1:8904540-8904559 | None:intergenic | 30.0% | |
| TACATGGATAGAATTTGTGT+GGG | - | chr4.1:8907796-8907815 | None:intergenic | 30.0% | |
| TAGCGGTTAACAAAATCAAT+GGG | - | chr4.1:8905758-8905777 | None:intergenic | 30.0% | |
| TATTATATGATCACCCGATA+TGG | + | chr4.1:8905024-8905043 | MS.gene70268:intron | 30.0% | |
| TATTCTCATTGAAAATGTGG+TGG | + | chr4.1:8908364-8908383 | MS.gene70268:CDS | 30.0% | |
| TGAAAACTGTTGTCCAAAAA+AGG | - | chr4.1:8906566-8906585 | None:intergenic | 30.0% | |
| TGATGTCAGAATCTGATATT+GGG | + | chr4.1:8906971-8906990 | MS.gene70268:intron | 30.0% | |
| TGATTACTGTCAATTGTCTT+AGG | + | chr4.1:8906888-8906907 | MS.gene70268:intron | 30.0% | |
| TGTAGTAGAATGTCAATTCT+TGG | + | chr4.1:8904972-8904991 | MS.gene70268:intron | 30.0% | |
| TTAAGACAATTGCTAGAGTA+GGG | - | chr4.1:8905436-8905455 | None:intergenic | 30.0% | |
| TTGATGTCAGAATCTGATAT+TGG | + | chr4.1:8906970-8906989 | MS.gene70268:intron | 30.0% | |
| TTTAACAAATGCAGAATCTG+TGG | + | chr4.1:8908421-8908440 | MS.gene70268:CDS | 30.0% | |
| TTTGTCGAAACAAACTAATG+AGG | + | chr4.1:8905299-8905318 | MS.gene70268:intron | 30.0% | |
| ! | ACAAGAAAAGTGGTTTTCTT+GGG | - | chr4.1:8905986-8906005 | None:intergenic | 30.0% |
| ! | CAAATTTTTATGCTGCATAG+AGG | + | chr4.1:8904483-8904502 | MS.gene70268:intron | 30.0% |
| ! | CACATTCCAAATTCTAAGAA+GGG | + | chr4.1:8904896-8904915 | MS.gene70268:intron | 30.0% |
| ! | CGTGAGCTTTTATCAAATAA+TGG | + | chr4.1:8907274-8907293 | MS.gene70268:intron | 30.0% |
| ! | GAATCAAACATGAGATTTTG+AGG | + | chr4.1:8904756-8904775 | MS.gene70268:intron | 30.0% |
| ! | GCGTTGAAATGTAACTTTTA+TGG | - | chr4.1:8905254-8905273 | None:intergenic | 30.0% |
| ! | GGTAAAATAGTTTAAAGCAG+GGG | + | chr4.1:8904862-8904881 | MS.gene70268:intron | 30.0% |
| ! | GTTCTTTTTACTTGCCATTA+AGG | - | chr4.1:8904575-8904594 | None:intergenic | 30.0% |
| !! | ACTAGTAAGTTGATTGATCA+TGG | - | chr4.1:8907417-8907436 | None:intergenic | 30.0% |
| !! | AGTTATTAAGGTTGATGTTG+AGG | + | chr4.1:8908067-8908086 | MS.gene70268:CDS | 30.0% |
| !! | AGTTGCATGATTTGTTGATT+TGG | + | chr4.1:8906440-8906459 | MS.gene70268:intron | 30.0% |
| !! | ATCCTCTCTTTTTGTTTGTA+AGG | + | chr4.1:8907176-8907195 | MS.gene70268:intron | 30.0% |
| !! | GTGATTTGATTTTGCAATGA+AGG | - | chr4.1:8908098-8908117 | None:intergenic | 30.0% |
| !! | TTTTATGGATTAATGCCGAT+TGG | - | chr4.1:8905239-8905258 | None:intergenic | 30.0% |
| !!! | CACTTTACAAACTAGTTTTG+TGG | + | chr4.1:8905143-8905162 | MS.gene70268:intron | 30.0% |
| !!! | TTGTTTTTAGTTTCCTGAGT+TGG | - | chr4.1:8908020-8908039 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTTTGTGGTGGC+CGG | + | chr4.1:8906667-8906686 | MS.gene70268:intron | 30.0% |
| AACTAAACCAAAGGTTACGA+AGG | + | chr4.1:8904170-8904189 | MS.gene70268:CDS | 35.0% | |
| ACAGATTCAGAAACACAAGA+AGG | + | chr4.1:8908269-8908288 | MS.gene70268:CDS | 35.0% | |
| ACATGAATCTCCAAAAACAG+AGG | + | chr4.1:8907989-8908008 | MS.gene70268:CDS | 35.0% | |
| ACCTAAGACAGTTGATCTAT+AGG | - | chr4.1:8906869-8906888 | None:intergenic | 35.0% | |
| ACGATCAAGCTAACTCAAAT+GGG | + | chr4.1:8904808-8904827 | MS.gene70268:intron | 35.0% | |
| ACTAAATGCATGGCAAACAA+AGG | + | chr4.1:8905692-8905711 | MS.gene70268:intron | 35.0% | |
| ACTACTGGTAGTAAGGAATA+TGG | + | chr4.1:8906913-8906932 | MS.gene70268:intron | 35.0% | |
| AGACACTATTGAAACCAAAG+TGG | + | chr4.1:8904239-8904258 | MS.gene70268:CDS | 35.0% | |
| AGATGGTAGGATAAATATGC+TGG | - | chr4.1:8906945-8906964 | None:intergenic | 35.0% | |
| AGCAATTGTCATTACTTGGT+AGG | - | chr4.1:8906731-8906750 | None:intergenic | 35.0% | |
| AGCATATTTATCCTACCATC+TGG | + | chr4.1:8906944-8906963 | MS.gene70268:intron | 35.0% | |
| AGCGGTTAACAAAATCAATG+GGG | - | chr4.1:8905757-8905776 | None:intergenic | 35.0% | |
| ATCTATTTGATCACCCACTA+TGG | + | chr4.1:8904935-8904954 | MS.gene70268:intron | 35.0% | |
| ATCTGTGGAGAACAAAATAG+TGG | + | chr4.1:8908436-8908455 | MS.gene70268:CDS | 35.0% | |
| ATGTCCTAATGTATGTTTGG+AGG | + | chr4.1:8904673-8904692 | MS.gene70268:intron | 35.0% | |
| ATTCATGATGTTTGTAACCG+TGG | - | chr4.1:8905825-8905844 | None:intergenic | 35.0% | |
| CAATTGTCTTAGGTAACTAC+TGG | + | chr4.1:8906898-8906917 | MS.gene70268:intron | 35.0% | |
| CATTAAGGTTTGTATCAAGG+GGG | - | chr4.1:8904560-8904579 | None:intergenic | 35.0% | |
| CCATTAAGGTTTGTATCAAG+GGG | - | chr4.1:8904561-8904580 | None:intergenic | 35.0% | |
| CTACTGGTAGTAAGGAATAT+GGG | + | chr4.1:8906914-8906933 | MS.gene70268:intron | 35.0% | |
| GACAATGCATAATACTTGCA+AGG | - | chr4.1:8906708-8906727 | None:intergenic | 35.0% | |
| GACCTTACAAACAAAAAGAG+AGG | - | chr4.1:8907181-8907200 | None:intergenic | 35.0% | |
| GATTGCAAAGTGCAAACAAA+AGG | + | chr4.1:8905845-8905864 | MS.gene70268:intron | 35.0% | |
| GCAATTGTCATTACTTGGTA+GGG | - | chr4.1:8906730-8906749 | None:intergenic | 35.0% | |
| GCATATTTATCCTACCATCT+GGG | + | chr4.1:8906945-8906964 | MS.gene70268:intron | 35.0% | |
| GCCATTAAGGTTTGTATCAA+GGG | - | chr4.1:8904562-8904581 | None:intergenic | 35.0% | |
| GCGAAAATCACTGTTTGATT+AGG | + | chr4.1:8906622-8906641 | MS.gene70268:intron | 35.0% | |
| GGAGATTCATGTTTCAAAGT+TGG | - | chr4.1:8907981-8908000 | None:intergenic | 35.0% | |
| GTAGATTCTTGTTCTGTAGA+TGG | - | chr4.1:8908047-8908066 | None:intergenic | 35.0% | |
| TACATCATGCACTAAATGCA+TGG | + | chr4.1:8905682-8905701 | MS.gene70268:intron | 35.0% | |
| TACCCAACAAAAGTTTACCT+TGG | + | chr4.1:8905482-8905501 | MS.gene70268:intron | 35.0% | |
| TATTGATACGGTAGTCCAAT+CGG | + | chr4.1:8905221-8905240 | MS.gene70268:intron | 35.0% | |
| TCATGTAGAGCATATATCCA+AGG | + | chr4.1:8908487-8908506 | MS.gene70268:CDS | 35.0% | |
| TCTATTTGATCACCCACTAT+GGG | + | chr4.1:8904936-8904955 | MS.gene70268:intron | 35.0% | |
| TCTCATCCCTTCTTAGAATT+TGG | - | chr4.1:8904905-8904924 | None:intergenic | 35.0% | |
| TGCCATTAAGGTTTGTATCA+AGG | - | chr4.1:8904563-8904582 | None:intergenic | 35.0% | |
| TTAACAAAATCAATGGGGGT+GGG | - | chr4.1:8905752-8905771 | None:intergenic | 35.0% | |
| TTAATTATTGACGAAGCCGA+TGG | - | chr4.1:8907591-8907610 | None:intergenic | 35.0% | |
| TTAGGTAACTACTGGTAGTA+AGG | + | chr4.1:8906906-8906925 | MS.gene70268:intron | 35.0% | |
| TTCATGATGTTTGTAACCGT+GGG | - | chr4.1:8905824-8905843 | None:intergenic | 35.0% | |
| TTCTCTTCTATGCTAGATGT+TGG | - | chr4.1:8908464-8908483 | None:intergenic | 35.0% | |
| TTCTGTCTTCACAATCTCTT+CGG | - | chr4.1:8908132-8908151 | None:intergenic | 35.0% | |
| TTTAGTAGATGCCAATGCTT+AGG | + | chr4.1:8905058-8905077 | MS.gene70268:intron | 35.0% | |
| TTTGATTCTCCGTGTCAATT+TGG | - | chr4.1:8904744-8904763 | None:intergenic | 35.0% | |
| ! | AAGAAAAGTGGTTTTCTTGG+GGG | - | chr4.1:8905984-8906003 | None:intergenic | 35.0% |
| ! | AGAAACAGAGAAACTTTTGG+AGG | + | chr4.1:8907938-8907957 | MS.gene70268:CDS | 35.0% |
| ! | ATATGGGTTATTGTCCTCTA+GGG | - | chr4.1:8907029-8907048 | None:intergenic | 35.0% |
| ! | ATTTTTATGCTGCATAGAGG+AGG | + | chr4.1:8904486-8904505 | MS.gene70268:intron | 35.0% |
| ! | CAAGAAAAGTGGTTTTCTTG+GGG | - | chr4.1:8905985-8906004 | None:intergenic | 35.0% |
| ! | CACCAAGGTAAACTTTTGTT+GGG | - | chr4.1:8905487-8905506 | None:intergenic | 35.0% |
| ! | CTTCAGCTGCAATATCATTT+TGG | - | chr4.1:8908235-8908254 | None:intergenic | 35.0% |
| ! | GACAAGAAAAGTGGTTTTCT+TGG | - | chr4.1:8905987-8906006 | None:intergenic | 35.0% |
| ! | GACTTTTTGTACCCCTTTTT+TGG | + | chr4.1:8906550-8906569 | MS.gene70268:intron | 35.0% |
| ! | GAGGTAATGGTGTGTAATTA+AGG | + | chr4.1:8906132-8906151 | MS.gene70268:intron | 35.0% |
| ! | GCACATTCCAAATTCTAAGA+AGG | + | chr4.1:8904895-8904914 | MS.gene70268:intron | 35.0% |
| ! | TCACCAAGGTAAACTTTTGT+TGG | - | chr4.1:8905488-8905507 | None:intergenic | 35.0% |
| !! | AAGCTTGTTGTTCAACAAAG+AGG | + | chr4.1:8904356-8904375 | MS.gene70268:CDS | 35.0% |
| !! | GGGCGAGTTGATAAAATATA+AGG | + | chr4.1:8905086-8905105 | MS.gene70268:intron | 35.0% |
| !! | TCAAACATGAGATTTTGAGG+AGG | + | chr4.1:8904759-8904778 | MS.gene70268:intron | 35.0% |
| !!! | GAGGTTCAAACTCTTGTTTT+AGG | + | chr4.1:8907679-8907698 | MS.gene70268:intron | 35.0% |
| !!! | GAGTAGGGAAGTGTTTTATA+TGG | - | chr4.1:8905421-8905440 | None:intergenic | 35.0% |
| !!! | GTTGGTTTTTCCTCTGTTTT+TGG | - | chr4.1:8908002-8908021 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTTTGTGGTGGCC+GGG | + | chr4.1:8906668-8906687 | MS.gene70268:intron | 35.0% |
| AAACATGAGTGATGAGTGGT+AGG | + | chr4.1:8906331-8906350 | MS.gene70268:intron | 40.0% | |
| AAACATGAGTGGTCCCATAT+CGG | - | chr4.1:8905041-8905060 | None:intergenic | 40.0% | |
| AAACCAAAGGTTACGAAGGA+TGG | + | chr4.1:8904174-8904193 | MS.gene70268:CDS | 40.0% | |
| AACAGAGGAAAAACCAACTC+AGG | + | chr4.1:8908004-8908023 | MS.gene70268:CDS | 40.0% | |
| AACCAAAGGTTACGAAGGAT+GGG | + | chr4.1:8904175-8904194 | MS.gene70268:CDS | 40.0% | |
| AACTTAAGTGACCCCATAGT+GGG | - | chr4.1:8904951-8904970 | None:intergenic | 40.0% | |
| ACTTGTCTGACCACCTTTAA+TGG | + | chr4.1:8907624-8907643 | MS.gene70268:intron | 40.0% | |
| AGCTAAACATGAGTGATGAG+TGG | + | chr4.1:8906327-8906346 | MS.gene70268:intron | 40.0% | |
| ATTCTCCGTGTCAATTTGGA+TGG | - | chr4.1:8904740-8904759 | None:intergenic | 40.0% | |
| CAAGCCTAAGAAAAGATGCT+AGG | + | chr4.1:8906410-8906429 | MS.gene70268:intron | 40.0% | |
| CACGATCAAGCTAACTCAAA+TGG | + | chr4.1:8904807-8904826 | MS.gene70268:intron | 40.0% | |
| CACTATTGAAACCAAAGTGG+AGG | + | chr4.1:8904242-8904261 | MS.gene70268:CDS | 40.0% | |
| CATAATACTTGCAAGGTACG+AGG | - | chr4.1:8906701-8906720 | None:intergenic | 40.0% | |
| CCCCTTGATACAAACCTTAA+TGG | + | chr4.1:8904558-8904577 | MS.gene70268:intron | 40.0% | |
| CTAACCCATCCAAATTGACA+CGG | + | chr4.1:8904732-8904751 | MS.gene70268:intron | 40.0% | |
| CTATTTGATCACCCACTATG+GGG | + | chr4.1:8904937-8904956 | MS.gene70268:intron | 40.0% | |
| CTTGTCTGACCACCTTTAAT+GGG | + | chr4.1:8907625-8907644 | MS.gene70268:intron | 40.0% | |
| GAATATGACTATAAGAGGGG+TGG | + | chr4.1:8905902-8905921 | MS.gene70268:intron | 40.0% | |
| GAGCATGAGAACAATGATAG+CGG | - | chr4.1:8905775-8905794 | None:intergenic | 40.0% | |
| GATTTGGAGAGATAGTGAGA+GGG | + | chr4.1:8906456-8906475 | MS.gene70268:intron | 40.0% | |
| GCCTATAGATCAACTGTCTT+AGG | + | chr4.1:8906865-8906884 | MS.gene70268:intron | 40.0% | |
| GCGGTTAACAAAATCAATGG+GGG | - | chr4.1:8905756-8905775 | None:intergenic | 40.0% | |
| GTAACTAACTATTGTTCGGC+AGG | + | chr4.1:8906820-8906839 | MS.gene70268:intron | 40.0% | |
| GTGTCTTCTTTAACCTGTTC+TGG | - | chr4.1:8904225-8904244 | None:intergenic | 40.0% | |
| GTTAACAAAATCAATGGGGG+TGG | - | chr4.1:8905753-8905772 | None:intergenic | 40.0% | |
| TAACTTAAGTGACCCCATAG+TGG | - | chr4.1:8904952-8904971 | None:intergenic | 40.0% | |
| TATTGCAGCTGAAGTAACTG+TGG | + | chr4.1:8908241-8908260 | MS.gene70268:CDS | 40.0% | |
| TATTTGGCGGAAATCAAGAG+AGG | + | chr4.1:8906113-8906132 | MS.gene70268:intron | 40.0% | |
| TGGCATCTACTAAACATGAG+TGG | - | chr4.1:8905052-8905071 | None:intergenic | 40.0% | |
| TTCAACTTACGCGCACAATT+CGG | - | chr4.1:8905172-8905191 | None:intergenic | 40.0% | |
| TTCACAACAGTTTCTTCAGC+TGG | - | chr4.1:8908206-8908225 | None:intergenic | 40.0% | |
| TTCTCCGTGTCAATTTGGAT+GGG | - | chr4.1:8904739-8904758 | None:intergenic | 40.0% | |
| ! | GATATGGGTTATTGTCCTCT+AGG | - | chr4.1:8907030-8907049 | None:intergenic | 40.0% |
| ! | GCTTTGTTACTACTGCTTGT+AGG | - | chr4.1:8905575-8905594 | None:intergenic | 40.0% |
| ! | TATGGGTTATTGTCCTCTAG+GGG | - | chr4.1:8907028-8907047 | None:intergenic | 40.0% |
| ! | TGATTTGGAGAGATAGTGAG+AGG | + | chr4.1:8906455-8906474 | MS.gene70268:intron | 40.0% |
| ! | TGCTCCTAGCATCTTTTCTT+AGG | - | chr4.1:8906417-8906436 | None:intergenic | 40.0% |
| ! | TTGAGTTAGCTTGATCGTGT+TGG | - | chr4.1:8904806-8904825 | None:intergenic | 40.0% |
| !! | AAACAAAGGTGCAACCCTTT+TGG | + | chr4.1:8905706-8905725 | MS.gene70268:intron | 40.0% |
| !! | TCTTTAACCTGTTCTGGTTC+AGG | - | chr4.1:8904219-8904238 | None:intergenic | 40.0% |
| !! | TGAGTTTGAGTTGACTGTGA+TGG | + | chr4.1:8906279-8906298 | MS.gene70268:intron | 40.0% |
| !! | TTGTTTTTCTGCCTCCACTT+TGG | - | chr4.1:8904256-8904275 | None:intergenic | 40.0% |
| !!! | TTTTTTTTTTGTGGTGGCCG+GGG | + | chr4.1:8906669-8906688 | MS.gene70268:intron | 40.0% |
| AACAAATAGGGGCCTCCAAA+AGG | - | chr4.1:8905724-8905743 | None:intergenic | 45.0% | |
| AACATGAGTGGTCCCATATC+GGG | - | chr4.1:8905040-8905059 | None:intergenic | 45.0% | |
| AATGTCAATTCTTGGCTGCG+AGG | + | chr4.1:8904980-8904999 | MS.gene70268:intron | 45.0% | |
| ACAAATAGGGGCCTCCAAAA+GGG | - | chr4.1:8905723-8905742 | None:intergenic | 45.0% | |
| ACCAAAGGTTACGAAGGATG+GGG | + | chr4.1:8904176-8904195 | MS.gene70268:CDS | 45.0% | |
| ACTTCAATCACTTTCTCCGC+AGG | - | chr4.1:8908398-8908417 | None:intergenic | 45.0% | |
| AGAAGGTGAGAAAGCTTCAG+AGG | + | chr4.1:8908286-8908305 | MS.gene70268:CDS | 45.0% | |
| AGTGATGAGTGGTAGGTAGT+GGG | + | chr4.1:8906338-8906357 | MS.gene70268:intron | 45.0% | |
| ATGCCAATGCTTAGGTGTGA+GGG | + | chr4.1:8905066-8905085 | MS.gene70268:intron | 45.0% | |
| ATGTCAATTCTTGGCTGCGA+GGG | + | chr4.1:8904981-8905000 | MS.gene70268:intron | 45.0% | |
| CAAGAGCAATTGTTGCAGAG+TGG | + | chr4.1:8904273-8904292 | MS.gene70268:CDS | 45.0% | |
| GAGAGGAAACCCATTAAAGG+TGG | - | chr4.1:8907637-8907656 | None:intergenic | 45.0% | |
| GCGGAAATCAAGAGAGGTAA+TGG | + | chr4.1:8906119-8906138 | MS.gene70268:intron | 45.0% | |
| GGGTGGGATCTGAACAAATA+GGG | - | chr4.1:8905736-8905755 | None:intergenic | 45.0% | |
| GGGTTGTGCAACTAAACCAA+AGG | + | chr4.1:8904161-8904180 | MS.gene70268:CDS | 45.0% | |
| GGTAGTAAGGAATATGGGCT+GGG | + | chr4.1:8906919-8906938 | MS.gene70268:intron | 45.0% | |
| GGTGGGATCTGAACAAATAG+GGG | - | chr4.1:8905735-8905754 | None:intergenic | 45.0% | |
| TGCGAGAGGAAACCCATTAA+AGG | - | chr4.1:8907640-8907659 | None:intergenic | 45.0% | |
| TGCGGAGAAAGTGATTGAAG+TGG | + | chr4.1:8908397-8908416 | MS.gene70268:CDS | 45.0% | |
| TGGTAGTAAGGAATATGGGC+TGG | + | chr4.1:8906918-8906937 | MS.gene70268:intron | 45.0% | |
| !! | ATCGTGTTGGCTTAGGACAT+AGG | - | chr4.1:8904793-8904812 | None:intergenic | 45.0% |
| !! | TAGCTTGATCGTGTTGGCTT+AGG | - | chr4.1:8904800-8904819 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTTTTTTTTG+TGG | + | chr4.1:8906660-8906679 | MS.gene70268:intron | 5.0% |
| AAGGTACGAGGTTCAAACCC+CGG | - | chr4.1:8906689-8906708 | None:intergenic | 50.0% | |
| ACTGTCAGCATCAGAAGCCT+TGG | - | chr4.1:8908507-8908526 | None:intergenic | 50.0% | |
| CCAAAGGTTACGAAGGATGG+GGG | + | chr4.1:8904177-8904196 | MS.gene70268:CDS | 50.0% | |
| GAGTGATGAGTGGTAGGTAG+TGG | + | chr4.1:8906337-8906356 | MS.gene70268:intron | 50.0% | |
| GATGCCAATGCTTAGGTGTG+AGG | + | chr4.1:8905065-8905084 | MS.gene70268:intron | 50.0% | |
| GGGGTGGGATCTGAACAAAT+AGG | - | chr4.1:8905737-8905756 | None:intergenic | 50.0% | |
| GGTGGGTGGAGATAGTAGAT+TGG | - | chr4.1:8907007-8907026 | None:intergenic | 50.0% | |
| TAACTAGTGTGCGTGTCCCA+CGG | + | chr4.1:8905805-8905824 | MS.gene70268:intron | 50.0% | |
| TCAATCACTTTCTCCGCAGG+TGG | - | chr4.1:8908395-8908414 | None:intergenic | 50.0% | |
| TTCTGACATCAAGGCCCAGA+TGG | - | chr4.1:8906962-8906981 | None:intergenic | 50.0% | |
| ! | GGTTATTGTCCTCTAGGGGT+GGG | - | chr4.1:8907024-8907043 | None:intergenic | 50.0% |
| !! | CAAAGGTGCAACCCTTTTGG+AGG | + | chr4.1:8905709-8905728 | MS.gene70268:intron | 50.0% |
| ATCACTTTCTCCGCAGGTGG+AGG | - | chr4.1:8908392-8908411 | None:intergenic | 55.0% | |
| CCCCCATCCTTCGTAACCTT+TGG | - | chr4.1:8904180-8904199 | None:intergenic | 55.0% | |
| GACATCAAGGCCCAGATGGT+AGG | - | chr4.1:8906958-8906977 | None:intergenic | 55.0% | |
| TCGCCCTCACACCTAAGCAT+TGG | - | chr4.1:8905072-8905091 | None:intergenic | 55.0% | |
| TGCATGGAGCTGCTCACTGA+TGG | + | chr4.1:8906380-8906399 | MS.gene70268:intron | 55.0% | |
| ! | GGGTTATTGTCCTCTAGGGG+TGG | - | chr4.1:8907025-8907044 | None:intergenic | 55.0% |
| ! | TATTGTCCTCTAGGGGTGGG+TGG | - | chr4.1:8907021-8907040 | None:intergenic | 55.0% |
| !! | GAAGGCACCTGAACCAGAAC+AGG | + | chr4.1:8904209-8904228 | MS.gene70268:CDS | 55.0% |
| !! | GGATGGGGGTGTTGATGTGA+AGG | + | chr4.1:8904191-8904210 | MS.gene70268:CDS | 55.0% |
| CTATCTCCACCCACCCCTAG+AGG | + | chr4.1:8907012-8907031 | MS.gene70268:intron | 60.0% | |
| TGTGGTGGTTCCTCCACCTG+CGG | + | chr4.1:8908379-8908398 | MS.gene70268:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 8904156 | 8908547 | 8904156 | ID=MS.gene70268 |
| chr4.1 | mRNA | 8904156 | 8908547 | 8904156 | ID=MS.gene70268.t1;Parent=MS.gene70268 |
| chr4.1 | exon | 8904156 | 8904377 | 8904156 | ID=MS.gene70268.t1.exon1;Parent=MS.gene70268.t1 |
| chr4.1 | CDS | 8904156 | 8904377 | 8904156 | ID=cds.MS.gene70268.t1;Parent=MS.gene70268.t1 |
| chr4.1 | exon | 8907861 | 8908547 | 8907861 | ID=MS.gene70268.t1.exon2;Parent=MS.gene70268.t1 |
| chr4.1 | CDS | 8907861 | 8908547 | 8907861 | ID=cds.MS.gene70268.t1;Parent=MS.gene70268.t1 |
| Gene Sequence |
| Protein sequence |
