AlfalfaGEDB | MS.gene050238

M. sativa cultivar XinJiangDaYe / MS.gene050238

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050238.t1	XP_013448441.1	95.5	863	31	1	1	863	1	855	0.00E+00	1595.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050238.t1	O48837	54.1	881	351	16	1	862	4	850	6.0e-248	858.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050238.t1	A0A072U030	95.5	863	31	1	1	863	1	855	0.0e+00	1595.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049227	MS.gene050238	0.830689	2.55E-55	-1.69E-46
MS.gene050238	MS.gene051538	0.805994	1.02E-49	-1.69E-46
MS.gene050238	MS.gene052016	0.823783	1.15E-53	-1.69E-46
MS.gene050238	MS.gene056677	0.826752	2.28E-54	-1.69E-46
MS.gene050238	MS.gene060522	0.808416	3.13E-50	-1.69E-46
MS.gene050238	MS.gene061100	0.824675	7.10E-54	-1.69E-46
MS.gene050238	MS.gene061707	0.837847	4.08E-57	-1.69E-46
MS.gene050238	MS.gene061729	0.806217	9.16E-50	-1.69E-46
MS.gene050238	MS.gene062288	0.814398	1.57E-51	-1.69E-46
MS.gene050238	MS.gene06341	0.830743	2.47E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050238.t1	MTR_7g451040	96.408	863	23	1	1	863	1	855	0.0	1726
MS.gene050238.t1	MTR_4g093080	38.522	379	189	9	87	460	312	651	1.87e-72	254
MS.gene050238.t1	MTR_4g093080	35.484	310	181	6	527	834	336	628	6.31e-54	201
MS.gene050238.t1	MTR_4g093070	39.888	356	173	8	114	463	334	654	2.34e-70	246
MS.gene050238.t1	MTR_4g093070	34.713	314	184	6	527	836	334	630	4.28e-53	197
MS.gene050238.t1	MTR_5g077100	41.071	336	155	8	114	443	355	653	7.13e-69	242
MS.gene050238.t1	MTR_5g077100	37.179	312	172	7	523	827	351	645	1.25e-54	202
MS.gene050238.t1	MTR_5g095970	38.342	386	186	9	73	455	318	654	5.21e-68	239
MS.gene050238.t1	MTR_5g095970	36.420	324	184	9	505	826	327	630	3.06e-52	194
MS.gene050238.t1	MTR_3g460810	40.491	326	163	5	114	439	309	603	1.74e-67	237

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050238.t1	AT2G32800	55.442	882	340	18	1	863	4	851	0.0	915
MS.gene050238.t1	AT3G59740	40.798	326	164	4	111	436	315	611	7.45e-73	252
MS.gene050238.t1	AT3G59740	32.581	310	194	7	527	833	318	615	7.21e-44	169
MS.gene050238.t1	AT5G55830	42.724	323	150	7	115	434	351	641	3.96e-71	248
MS.gene050238.t1	AT5G55830	36.755	302	176	5	528	826	351	640	3.14e-50	189
MS.gene050238.t1	AT3G53380	43.385	325	144	7	114	432	361	651	4.26e-71	249
MS.gene050238.t1	AT3G53380	35.897	312	178	5	523	827	357	653	3.44e-55	204
MS.gene050238.t1	AT5G03140	40.798	326	151	6	113	432	358	647	9.96e-69	242
MS.gene050238.t1	AT5G03140	35.873	315	172	8	523	827	355	649	6.83e-53	197
MS.gene050238.t1	AT3G53810	40.063	317	157	6	117	432	335	619	1.01e-67	238

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Find 130 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATTTACAAACATAG+GGG	0.632056	7.1:-53171032	MS.gene050238:CDS
AAACATGACAATTGTCGTCG+AGG	0.679499	7.1:+53169575	None:intergenic
AAAGAATTTACAAACATAGG+GGG	0.603215	7.1:-53171031	MS.gene050238:CDS
AAAGCTAAATACATCACATT+TGG	0.398745	7.1:+53170236	None:intergenic
AAAGCTTCGACATCGGAATT+TGG	0.277319	7.1:-53169479	MS.gene050238:CDS
AAAGTTCCTTCAAGGGCTTG+TGG	0.591915	7.1:-53171131	MS.gene050238:CDS
AAATGTGATGTATTTAGCTT+TGG	0.384978	7.1:-53170234	MS.gene050238:CDS
AAATGTTGTTTATCAGAGAA+AGG	0.467928	7.1:-53170783	MS.gene050238:CDS
AAGAATCTTGTTAGGTTGAG+AGG	0.515805	7.1:-53170702	MS.gene050238:CDS
AAGAATTTACAAACATAGGG+GGG	0.672804	7.1:-53171030	MS.gene050238:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGACCATTGAAGGAAT+TGG	-	chr7.1:53171012-53171031	MS.gene050238:CDS	30.0%
AAGAATTTACAAACATAGGG+GGG	-	chr7.1:53168909-53168928	MS.gene050238:CDS	30.0%
AATTTGAAAAATGAGCCACT+TGG	-	chr7.1:53169348-53169367	MS.gene050238:CDS	30.0%
ACAATTACAGCAACAACAAT+AGG	-	chr7.1:53169571-53169590	MS.gene050238:CDS	30.0%
ATACTACCAAATCAGTCAAA+GGG	-	chr7.1:53170819-53170838	MS.gene050238:CDS	30.0%
ATTACTCAACATGAAGAACA+AGG	-	chr7.1:53171174-53171193	MS.gene050238:CDS	30.0%
CACACCAAAACTATAAACAT+CGG	+	chr7.1:53170900-53170919	None:intergenic	30.0%
GAAGACAAAGAGATATAAAG+AGG	+	chr7.1:53170032-53170051	None:intergenic	30.0%
GATAAGAAAAAGACCATTGA+AGG	-	chr7.1:53171006-53171025	MS.gene050238:CDS	30.0%
TCTCATTACAATGCTAAGTT+AGG	-	chr7.1:53169489-53169508	MS.gene050238:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	53168685	53171276	53168685	ID=MS.gene050238
chr7.1	mRNA	53168685	53171276	53168685	ID=MS.gene050238.t1;Parent=MS.gene050238
chr7.1	exon	53168685	53171276	53168685	ID=MS.gene050238.t1.exon1;Parent=MS.gene050238.t1
chr7.1	CDS	53168685	53171276	53168685	ID=cds.MS.gene050238.t1;Parent=MS.gene050238.t1

Gene Sequence

>MS.gene050238

ATGCAACTCCATAAACTTTGCATTGTTTTACCACAAAATTCAGGTGAAATAATGATACAACAACCTGAAAAAAGTTTCCAAAAACAATCTCCTCAATCTTCAAAGAAAGAAAAATTTAAGTCCAAAGTTCCTTCAAGGGCTTGTGGTGGAGGACAACAAGTTTTTGATTTGCTTCAGCATTCATTGAGCAAGTTATGTAGCTCAAGATGGGTGGGAGGTGCAAAAAGAATTTACAAACATAGGGGGGTGCAAAAAGGAAAAAAGAAAAACTCTTCAAGTAAGACTGTTTTTCATGACATGGATGGTGTACAATTTGCTGTCAAGATAGGAAGAGACAATCCAAGGATTTTCAGCTATGCAGAACTTTTCATAGGTTCAAATGGTTTCAATGAAGAACAAGTTCTAGGAAGTGGAGGCTTTGGAAAAGTGTACAAAGCACTTTTGCCAAGTGATGGAACTTTGGTTGCTGTGAAATGTTGTTTATCAGAGAAAGGTAAACAATTTGACAAGAGTTTCTTAGCTGAATTAAACGCCGTGGCCGATCTTCGACACAAGAATCTTGTTAGGTTGAGAGGTTGGTGTGTTCATGAAGATCAATTACATCTTGTTTATGATTACATGCCTAATCGAAGCCTTGACCGAGTTCTTTTTCGACGGTTGGAGAATTTGAAAAATGAGCCACTTGGTTGGGGACAAAGAGGAAAAATTGTTAAAGGTTTGGCTGCTGCATTGTATTATCTGCATGAACAGTTAGAGACTCAAATCATTCATAGAGATGTCAAAACAAGTAATGTTATGCTTGATTCTCATTACAATGCTAAGTTAGGTGATTTTGGCATGGCAAGGTGGTTAGAACATGAACTTGAATATGAGTTCAAGTACAAGTACAATTACAGCAACAACAATAGGAAGACATCAAGTAGAATTGATCATTTCAAATTGGGAGAAACATCGAGAATTGGCGGAACAATTGGTTATCTTCCACCAGAAAGCTTGCAAAAACCAAGCAATGGAACTTCCAAATGTGATGTATTTAGCTTTGGTATTGTTGTGCTTGAAATTGTATCTGGAAGGAGAGCAATAGATCTTGCATACCCTGATGATAAAATCATTTTGATTGATTGGATCAGAAGGCTTTGTGATGAAGGAAAGCTTCTAGAAGCAGCTGATACAAGGTTACAGAAAGATGGATCATACAATTTTTCTGAGATGAAGCATTTCATTCATATAAGTCTTCTTTGTACACTTCATGATCCGAATTTGAGGCCTAATATGAAATGGGTTGTGGAAGCACTTTCTGATTTAAGTTTCAAACTTCCTTCACTTCCTTCATTTCTATCTCATCCTCTTTATATCTCTTTGTCTTCACCTTCTGAAACTACTAGGACTAGTAGCACAAGTGGCACGATCTCGGCCGCTGAAAATCTTAGCTTAATCACAAACTATAGTTCATCAAACTATGTTACAGCTGTAGGTGAAACAGTTTATGTAACAGCTGAACAAAAAAACAGTGGAATTAGGTCTTCTAAGAGCATGAATCAGAATCATTACAAGCCAAATTTTCCTGTGGTTGAAACTCCAAGAGAAATTTCATACAAAGAGATTGTTTGTGCTACAAGTAACTTCTCCGAGTCGAGAAGGGTAGCAGAACTTGACTTTGGAACTGCTTATCATGGAATCCTCGACGACAATTGTCATGTTTTGGTGAAAAGGTTAGGGATGAAGACATGTCCTGCACTGCGCGATAGATTCTCAAACGAACTCAGGAATCTAGGAAAGCTTCGACATCGGAATTTGGTTCAGCTTCGCGGATGGTGCACCGAACAAGGAGAGATGCTTGTGGTTTATGATTACTCGGCTAGTAGAATTCTCAGTCAACAACTTCAACAAATTCATAACAAAGGTAGAAACGATTATCAATGTTCGGTACTTGAATGGCATCATAGGTACAACATAGTGAAATCACTTGCTTCTGCAGTTCTTTATCTACATGAAGAATGGGATGAACAAGTGATTCACAGAAACATTACCTCTTCAGCTGTAATTCTTGAACAAGATATGAATCCAAGACTTAGTAGTTTTGCTCTAGCTGAATTCTTGTCAAGAAATGAGCATGGCCATCATGTAGTCAATGATACTACCAAATCAGTCAAAGGGATTTTCGGTTATATGTCGCCTGAATATGTCGATTCAGGCGAAGCCACCTCGGCGGCCGATGTTTATAGTTTTGGTGTGGTGGTGCTTGAAATTGTTAGTGGAATGATGGCGGTGGATTTCAGGTACCAAGAGGTTCTTTTGGTGAAGAAGGTTCATGAATTTGTGATAAGAAAAAGACCATTGAAGGAATTGGCTGATATAAGACTCAATGGAGAGTATAATGAGAAAGAATTGATAAGGTTGGTGAGATTAGGAATTGCATGCACTAGTTGTGATCCTCAATTGAGACCAAGCATGAGACAAATTGTGAGCATTCTTGATGGAAATGATAAATTACTCAACATGAAGAACAAGGAAAGTAGGGAAGAATGGAGAGACAGAAATGCTTGTTCTTTATCAATGATTCGGAGAATTCAAGCTCTAGGAATACAGTAA

Protein sequence

>MS.gene050238.t1

MQLHKLCIVLPQNSGEIMIQQPEKSFQKQSPQSSKKEKFKSKVPSRACGGGQQVFDLLQHSLSKLCSSRWVGGAKRIYKHRGVQKGKKKNSSSKTVFHDMDGVQFAVKIGRDNPRIFSYAELFIGSNGFNEEQVLGSGGFGKVYKALLPSDGTLVAVKCCLSEKGKQFDKSFLAELNAVADLRHKNLVRLRGWCVHEDQLHLVYDYMPNRSLDRVLFRRLENLKNEPLGWGQRGKIVKGLAAALYYLHEQLETQIIHRDVKTSNVMLDSHYNAKLGDFGMARWLEHELEYEFKYKYNYSNNNRKTSSRIDHFKLGETSRIGGTIGYLPPESLQKPSNGTSKCDVFSFGIVVLEIVSGRRAIDLAYPDDKIILIDWIRRLCDEGKLLEAADTRLQKDGSYNFSEMKHFIHISLLCTLHDPNLRPNMKWVVEALSDLSFKLPSLPSFLSHPLYISLSSPSETTRTSSTSGTISAAENLSLITNYSSSNYVTAVGETVYVTAEQKNSGIRSSKSMNQNHYKPNFPVVETPREISYKEIVCATSNFSESRRVAELDFGTAYHGILDDNCHVLVKRLGMKTCPALRDRFSNELRNLGKLRHRNLVQLRGWCTEQGEMLVVYDYSASRILSQQLQQIHNKGRNDYQCSVLEWHHRYNIVKSLASAVLYLHEEWDEQVIHRNITSSAVILEQDMNPRLSSFALAEFLSRNEHGHHVVNDTTKSVKGIFGYMSPEYVDSGEATSAADVYSFGVVVLEIVSGMMAVDFRYQEVLLVKKVHEFVIRKRPLKELADIRLNGEYNEKELIRLVRLGIACTSCDPQLRPSMRQIVSILDGNDKLLNMKNKESREEWRDRNACSLSMIRRIQALGIQ