Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70477.t1 | XP_003601496.2 | 97.1 | 513 | 15 | 0 | 1 | 513 | 43 | 555 | 2.40E-288 | 1000.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70477.t1 | Q8GUM4 | 44.6 | 516 | 267 | 8 | 4 | 513 | 46 | 548 | 1.5e-108 | 394.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70477.t1 | G7J850 | 97.1 | 513 | 15 | 0 | 1 | 513 | 43 | 555 | 1.7e-288 | 1000.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70477 | MS.gene47071 | PPI |
| MS.gene70477 | MS.gene55433 | PPI |
| MS.gene70477 | MS.gene074163 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70477.t1 | MTR_3g082330 | 97.076 | 513 | 15 | 0 | 1 | 513 | 43 | 555 | 0.0 | 1028 |
| MS.gene70477.t1 | MTR_3g082410 | 96.881 | 513 | 16 | 0 | 1 | 513 | 43 | 555 | 0.0 | 1025 |
| MS.gene70477.t1 | MTR_7g031900 | 46.307 | 501 | 253 | 5 | 4 | 499 | 46 | 535 | 8.98e-153 | 449 |
| MS.gene70477.t1 | MTR_6g022160 | 45.969 | 459 | 237 | 4 | 40 | 496 | 4 | 453 | 5.86e-136 | 403 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70477.t1 | AT4G12680 | 65.953 | 514 | 174 | 1 | 1 | 513 | 43 | 556 | 0.0 | 703 |
| MS.gene70477.t1 | AT3G27390 | 45.543 | 516 | 262 | 8 | 4 | 513 | 46 | 548 | 5.93e-148 | 436 |
| MS.gene70477.t1 | AT3G27390 | 45.543 | 516 | 262 | 8 | 4 | 513 | 46 | 548 | 5.93e-148 | 436 |
| MS.gene70477.t1 | AT5G40640 | 44.869 | 497 | 253 | 5 | 4 | 493 | 46 | 528 | 7.17e-145 | 429 |
| MS.gene70477.t1 | AT4G37030 | 38.140 | 527 | 310 | 7 | 1 | 512 | 43 | 568 | 3.18e-130 | 390 |
Find 101 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGGCCTTTGGCTGTTCT+AGG | 0.194949 | 3.1:-66728026 | MS.gene70477:CDS |
| CTTCTAACATTGTCATTAGA+TGG | 0.238446 | 3.1:+66726685 | None:intergenic |
| TGCCATCATCCTTTGGCCTT+TGG | 0.252931 | 3.1:-66728036 | MS.gene70477:CDS |
| ATGTTGCTTGTTGGTGATTC+TGG | 0.273564 | 3.1:-66728210 | MS.gene70477:CDS |
| CTGGTCTTGCCATCATCCTT+TGG | 0.286827 | 3.1:-66728043 | MS.gene70477:CDS |
| ATGGGACACATTCAGTTTCT+AGG | 0.299355 | 3.1:+66728069 | None:intergenic |
| AGAGTGTTTGAGTGGTTTAT+TGG | 0.302946 | 3.1:-66726835 | MS.gene70477:CDS |
| AGCCCTTACATGCTGTTTAG+AGG | 0.321033 | 3.1:-66728137 | MS.gene70477:CDS |
| TTTGGACTGCACATGTTGTT+TGG | 0.342087 | 3.1:-66729571 | MS.gene70477:CDS |
| ATTTCATTGCTACAGGTTGC+AGG | 0.349552 | 3.1:-66726420 | MS.gene70477:intron |
| GCATTTGCCATTATGGTTGC+TGG | 0.366836 | 3.1:-66729617 | None:intergenic |
| GGAAATTCAGCTGTTATCAT+TGG | 0.371631 | 3.1:-66729596 | MS.gene70477:CDS |
| TCATACTTCTCGATTGTTGT+AGG | 0.371721 | 3.1:+66727283 | None:intergenic |
| TAATCACATCAATTGCTATA+TGG | 0.373356 | 3.1:-66728163 | MS.gene70477:CDS |
| AACAAGCTGTACAGTGGTTC+AGG | 0.378491 | 3.1:-66728833 | MS.gene70477:CDS |
| CATCCTCTAAACAGCATGTA+AGG | 0.382964 | 3.1:+66728134 | None:intergenic |
| GACAACAGAACAAAGAGGTT+TGG | 0.387518 | 3.1:-66729424 | MS.gene70477:intron |
| ACTGAATGTGTCCCATTTGC+TGG | 0.394958 | 3.1:-66728062 | MS.gene70477:CDS |
| CGGTGGAGTCGTTGTCCATC+AGG | 0.398197 | 3.1:-66727958 | MS.gene70477:intron |
| ACAACTTACTTGATATCAAA+TGG | 0.408249 | 3.1:+66728733 | None:intergenic |
| TTCAAGTCGTGTGAGGTAAA+CGG | 0.411920 | 3.1:-66727141 | MS.gene70477:CDS |
| CATACTTCTCGATTGTTGTA+GGG | 0.430578 | 3.1:+66727284 | None:intergenic |
| TGTGGTGTTGATATGTTTGC+CGG | 0.431482 | 3.1:-66729386 | MS.gene70477:CDS |
| GGCAAAATTATCAAAGGAAC+CGG | 0.438191 | 3.1:+66729367 | None:intergenic |
| ACTGTTACCATGTTGCTTGT+TGG | 0.438575 | 3.1:-66728219 | MS.gene70477:CDS |
| AAACGATATACCAGAGGATT+GGG | 0.440225 | 3.1:-66726722 | MS.gene70477:CDS |
| GCTTGTTGGTGATTCTGGTT+GGG | 0.442030 | 3.1:-66728205 | MS.gene70477:CDS |
| GCCTTCTTTAGCTGAAGCAC+TGG | 0.445716 | 3.1:+66726310 | None:intergenic |
| AAAATCAAATTCAGATGGAT+TGG | 0.449748 | 3.1:-66726989 | MS.gene70477:CDS |
| TGGATAGCACCTGGGAAGGC+AGG | 0.452467 | 3.1:+66727719 | None:intergenic |
| GGACAACGACTCCACCGTAT+AGG | 0.455943 | 3.1:+66727964 | None:intergenic |
| TTGCCGGTAGTTGGTATTGT+TGG | 0.456622 | 3.1:-66729349 | MS.gene70477:CDS |
| CAGCTGTTATCATTGGACTT+TGG | 0.458039 | 3.1:-66729589 | MS.gene70477:CDS |
| TGAAACCACAGATACAATAT+AGG | 0.458596 | 3.1:+66727788 | None:intergenic |
| CACTCAAACACTCTATCCTT+TGG | 0.461695 | 3.1:+66726844 | None:intergenic |
| TGCTTGTTGGTGATTCTGGT+TGG | 0.464031 | 3.1:-66728206 | MS.gene70477:CDS |
| AGTTGCAAGCTATAATTAGA+AGG | 0.464334 | 3.1:-66726657 | MS.gene70477:intron |
| TAGAAGACTTGGTTGGAAGA+AGG | 0.464711 | 3.1:-66728100 | MS.gene70477:CDS |
| GACCATCACGGAGGACTATC+CGG | 0.472810 | 3.1:+66727118 | None:intergenic |
| AGAAGACTTGGTTGGAAGAA+GGG | 0.473274 | 3.1:-66728099 | MS.gene70477:CDS |
| AAAACGATATACCAGAGGAT+TGG | 0.477424 | 3.1:-66726723 | MS.gene70477:CDS |
| TGGACTAGTGTTCAAGATTG+TGG | 0.495895 | 3.1:-66729404 | MS.gene70477:CDS |
| ATGATGGCAAGACCAGCAAA+TGG | 0.497676 | 3.1:+66728050 | None:intergenic |
| TAAGCATCAAATTACCAGCT+TGG | 0.499295 | 3.1:-66727041 | MS.gene70477:CDS |
| TTCTAACATTGTCATTAGAT+GGG | 0.505182 | 3.1:+66726686 | None:intergenic |
| GTGATTAAAACCACATCAAA+GGG | 0.505544 | 3.1:+66728179 | None:intergenic |
| AGACTATTAGAAGACTTGGT+TGG | 0.510814 | 3.1:-66728107 | MS.gene70477:CDS |
| GATAAGTGTAAAGGAAATTG+AGG | 0.510825 | 3.1:-66727094 | MS.gene70477:CDS |
| CTTACATGCTGTTTAGAGGA+TGG | 0.520118 | 3.1:-66728133 | MS.gene70477:CDS |
| TCAGCAAAATCAAATTCAGA+TGG | 0.520927 | 3.1:-66726994 | MS.gene70477:CDS |
| TCAGCAATATAAACCTGTGC+AGG | 0.522657 | 3.1:-66727250 | MS.gene70477:intron |
| GTAGGAGGACTCACTGAAGA+TGG | 0.524821 | 3.1:-66727817 | MS.gene70477:intron |
| TATGATGCCAGGATGGTTGT+TGG | 0.525139 | 3.1:-66728867 | MS.gene70477:intron |
| TGCTCTTTCATGATCAGTAA+AGG | 0.529067 | 3.1:+66726811 | None:intergenic |
| GAAGACTTGGTTGGAAGAAG+GGG | 0.530285 | 3.1:-66728098 | MS.gene70477:CDS |
| TAGGAGGACTCACTGAAGAT+GGG | 0.535422 | 3.1:-66727816 | MS.gene70477:CDS |
| GAGAAGGATCCTGCCTTCCC+AGG | 0.536600 | 3.1:-66727728 | MS.gene70477:intron |
| TGTGATTAAAACCACATCAA+AGG | 0.539186 | 3.1:+66728178 | None:intergenic |
| AGCCAAAGGCCAAAGGATGA+TGG | 0.539527 | 3.1:+66728034 | None:intergenic |
| ATAGAACTGACAAGGATGAA+TGG | 0.540507 | 3.1:-66726868 | MS.gene70477:CDS |
| CATGTTACCATCACCTGCAC+AGG | 0.541861 | 3.1:+66727237 | None:intergenic |
| AAAAGTTGGCATCCGAGACA+TGG | 0.543213 | 3.1:+66726385 | None:intergenic |
| TTTCATTGCTACAGGTTGCA+GGG | 0.544530 | 3.1:-66726419 | MS.gene70477:intron |
| GGATCGTGTCTTCCATGTCT+CGG | 0.545681 | 3.1:-66726397 | MS.gene70477:CDS |
| GCCAGTGCTTCAGCTAAAGA+AGG | 0.549583 | 3.1:-66726311 | MS.gene70477:CDS |
| GTTTGCCTATATTGTATCTG+TGG | 0.551430 | 3.1:-66727793 | MS.gene70477:CDS |
| TGATGGCAAGACCAGCAAAT+GGG | 0.553432 | 3.1:+66728051 | None:intergenic |
| GGTTGGGATGCCCTTTGATG+TGG | 0.558727 | 3.1:-66728189 | MS.gene70477:CDS |
| AACAATCGAGAAGTATGAAG+TGG | 0.559930 | 3.1:-66727278 | MS.gene70477:CDS |
| CCAGTGCTATCCCAATCCTC+TGG | 0.561004 | 3.1:+66726712 | None:intergenic |
| TGATGGTCTGATAAGTGTAA+AGG | 0.563206 | 3.1:-66727103 | MS.gene70477:CDS |
| ACCTCAAAAGTTGAAAGAAG+AGG | 0.564498 | 3.1:+66729289 | None:intergenic |
| GCAGCTTAAGAATCTTGAGC+TGG | 0.568575 | 3.1:-66726791 | MS.gene70477:CDS |
| GAAGAGACTATTAGAAGACT+TGG | 0.569480 | 3.1:-66728111 | MS.gene70477:CDS |
| GGACATATTATTGTGTGGCA+AGG | 0.570386 | 3.1:-66729550 | MS.gene70477:intron |
| GATTTACTCTACTTGAGAGA+AGG | 0.571412 | 3.1:-66727744 | MS.gene70477:CDS |
| ACACATTCAGTTTCTAGGAA+AGG | 0.573379 | 3.1:+66728074 | None:intergenic |
| CACTGTAGCAAGGACCAAGC+TGG | 0.573786 | 3.1:+66727027 | None:intergenic |
| TTGAAAGAACTTGTTATGAG+AGG | 0.588914 | 3.1:-66726748 | MS.gene70477:CDS |
| CCAGAGGATTGGGATAGCAC+TGG | 0.589157 | 3.1:-66726712 | MS.gene70477:CDS |
| AAATTGGATAGCACCTGGGA+AGG | 0.591081 | 3.1:+66727715 | None:intergenic |
| TTCATTGCTACAGGTTGCAG+GGG | 0.591621 | 3.1:-66726418 | MS.gene70477:intron |
| CAAAGGATAGAGTGTTTGAG+TGG | 0.594544 | 3.1:-66726843 | MS.gene70477:CDS |
| CTACCAACAATACCAACTAC+CGG | 0.598510 | 3.1:+66729346 | None:intergenic |
| ATACAAAGCATGCACTTGAG+AGG | 0.607375 | 3.1:-66727374 | MS.gene70477:CDS |
| GGCCGGATAGTCCTCCGTGA+TGG | 0.609151 | 3.1:-66727120 | MS.gene70477:CDS |
| ATCCTCTAAACAGCATGTAA+GGG | 0.609256 | 3.1:+66728135 | None:intergenic |
| GACAAGGATGAATGGACCAA+AGG | 0.624889 | 3.1:-66726860 | MS.gene70477:CDS |
| ACTACCGGCAAAATTATCAA+AGG | 0.628322 | 3.1:+66729361 | None:intergenic |
| CTAGAACAGCCAAAGGCCAA+AGG | 0.631343 | 3.1:+66728027 | None:intergenic |
| AGGAGGACTCACTGAAGATG+GGG | 0.638782 | 3.1:-66727815 | MS.gene70477:CDS |
| AGTCGTGTGAGGTAAACGGC+CGG | 0.645750 | 3.1:-66727137 | MS.gene70477:CDS |
| AGAATCACCAACAAGCAACA+TGG | 0.653350 | 3.1:+66728212 | None:intergenic |
| CTGATGATATAGAACTGACA+AGG | 0.654288 | 3.1:-66726876 | MS.gene70477:CDS |
| CCTTTGACAACAGAACAAAG+AGG | 0.663459 | 3.1:-66729429 | MS.gene70477:intron |
| AGTTAGAAGACACTGTAGCA+AGG | 0.669269 | 3.1:+66727017 | None:intergenic |
| ACAGCACCTAGAACAGCCAA+AGG | 0.672365 | 3.1:+66728020 | None:intergenic |
| TGTTTGGACATATTATTGTG+TGG | 0.684437 | 3.1:-66729555 | MS.gene70477:CDS |
| AATTGAAACAAGCTGTACAG+TGG | 0.685491 | 3.1:-66728839 | MS.gene70477:CDS |
| TTACACTTATCAGACCATCA+CGG | 0.719169 | 3.1:+66727106 | None:intergenic |
| CACTTATCAGACCATCACGG+AGG | 0.752339 | 3.1:+66727109 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAGTAGAAAAAAACTTA+TGG | - | chr3.1:66726868-66726887 | MS.gene70477:CDS | 15.0% |
| !! | ATGATCATAATTTGAAAAAT+AGG | - | chr3.1:66728559-66728578 | MS.gene70477:intron | 15.0% |
| !! | AAATAAGTTGCATTAACTAT+AGG | + | chr3.1:66727008-66727027 | None:intergenic | 20.0% |
| !! | ATCAAATAACAAAAGAAAAG+TGG | - | chr3.1:66727449-66727468 | MS.gene70477:intron | 20.0% |
| !! | ATGAAACATATAATCATACA+TGG | + | chr3.1:66726411-66726430 | None:intergenic | 20.0% |
| !! | CAAACTATCAAACATATATT+TGG | + | chr3.1:66727192-66727211 | None:intergenic | 20.0% |
| !! | GATACTGAATTTAATTCAAT+CGG | + | chr3.1:66727589-66727608 | None:intergenic | 20.0% |
| !! | GTATCTTACAATTCATAATA+AGG | + | chr3.1:66727319-66727338 | None:intergenic | 20.0% |
| !!! | GTTTTAAGAGATTTTATTGT+AGG | - | chr3.1:66728059-66728078 | MS.gene70477:CDS | 20.0% |
| ! | AAAAGGAGGATAATTAACTA+TGG | + | chr3.1:66726972-66726991 | None:intergenic | 25.0% |
| ! | AAAATCAAATTCAGATGGAT+TGG | - | chr3.1:66728905-66728924 | MS.gene70477:intron | 25.0% |
| ! | AAACAAACTTACGTAATATG+AGG | + | chr3.1:66728433-66728452 | None:intergenic | 25.0% |
| ! | AAAGTAGTTACACTAAGTTT+AGG | - | chr3.1:66727504-66727523 | MS.gene70477:intron | 25.0% |
| ! | AAATAAACACACTAGAGATT+TGG | - | chr3.1:66727562-66727581 | MS.gene70477:intron | 25.0% |
| ! | AATAACAAAAGAAAAGTGGT+TGG | - | chr3.1:66727453-66727472 | MS.gene70477:intron | 25.0% |
| ! | AATTGCAAGTCTAAAGAATT+TGG | + | chr3.1:66726383-66726402 | None:intergenic | 25.0% |
| ! | ACAACTTACTTGATATCAAA+TGG | + | chr3.1:66727164-66727183 | None:intergenic | 25.0% |
| ! | AGCATATTTACATATTCCAA+TGG | + | chr3.1:66728971-66728990 | None:intergenic | 25.0% |
| ! | CAATCTAACAAAGAAAACTA+TGG | + | chr3.1:66727653-66727672 | None:intergenic | 25.0% |
| ! | CTATCAAACATATATTTGGA+CGG | + | chr3.1:66727188-66727207 | None:intergenic | 25.0% |
| ! | GAGCTTCTTGTATATATATT+CGG | - | chr3.1:66727990-66728009 | MS.gene70477:CDS | 25.0% |
| ! | GTATGAAAAAAGAAATGTTC+TGG | - | chr3.1:66727213-66727232 | MS.gene70477:intron | 25.0% |
| ! | TAATCACATCAATTGCTATA+TGG | - | chr3.1:66727731-66727750 | MS.gene70477:CDS | 25.0% |
| ! | TAGATTATCAAATCGTGATT+CGG | - | chr3.1:66727268-66727287 | MS.gene70477:CDS | 25.0% |
| ! | TTCTAACATTGTCATTAGAT+GGG | + | chr3.1:66729211-66729230 | None:intergenic | 25.0% |
| !! | TATGTAATTTAGGTTCTGTT+TGG | - | chr3.1:66726740-66726759 | MS.gene70477:CDS | 25.0% |
| !! | TCACTCATATTTTTCATACA+TGG | - | chr3.1:66727103-66727122 | MS.gene70477:CDS | 25.0% |
| !! | TTAAGAGATTTTATTGTAGG+AGG | - | chr3.1:66728062-66728081 | MS.gene70477:CDS | 25.0% |
| !!! | AGTTTTTTTCTTAGCCTATA+CGG | - | chr3.1:66727916-66727935 | MS.gene70477:intron | 25.0% |
| !!! | TTTGTATTTTTACGGTATAC+TGG | + | chr3.1:66728507-66728526 | None:intergenic | 25.0% |
| ACCAATAATAGATATAGCGT+TGG | - | chr3.1:66728385-66728404 | MS.gene70477:intron | 30.0% | |
| AGACTGTTCAAAAGAGTTTA+TGG | + | chr3.1:66726912-66726931 | None:intergenic | 30.0% | |
| AGCAATTCATCAGAATGAAT+TGG | - | chr3.1:66727528-66727547 | MS.gene70477:intron | 30.0% | |
| AGCACAGTAAAAGAAAATGA+TGG | + | chr3.1:66728216-66728235 | None:intergenic | 30.0% | |
| AGTAAAAGAAAATGATGGCA+TGG | + | chr3.1:66728211-66728230 | None:intergenic | 30.0% | |
| AGTTGCAAGCTATAATTAGA+AGG | - | chr3.1:66729237-66729256 | MS.gene70477:intron | 30.0% | |
| ATTTGGTATTTCATTGCTAC+AGG | - | chr3.1:66729467-66729486 | MS.gene70477:intron | 30.0% | |
| CTTCTAACATTGTCATTAGA+TGG | + | chr3.1:66729212-66729231 | None:intergenic | 30.0% | |
| GAACCTAAATTACATAGTCA+TGG | + | chr3.1:66726736-66726755 | None:intergenic | 30.0% | |
| GATAAGTGTAAAGGAAATTG+AGG | - | chr3.1:66728800-66728819 | MS.gene70477:CDS | 30.0% | |
| GCAATTCATCAGAATGAATT+GGG | - | chr3.1:66727529-66727548 | MS.gene70477:intron | 30.0% | |
| GTAGCAATGAAATACCAAAT+GGG | + | chr3.1:66729467-66729486 | None:intergenic | 30.0% | |
| GTGATTAAAACCACATCAAA+GGG | + | chr3.1:66727718-66727737 | None:intergenic | 30.0% | |
| TAGGATAGTTAAGCTAGAAA+AGG | + | chr3.1:66726989-66727008 | None:intergenic | 30.0% | |
| TCAGCAAAATCAAATTCAGA+TGG | - | chr3.1:66728900-66728919 | MS.gene70477:intron | 30.0% | |
| TCCAACGCTATATCTATTAT+TGG | + | chr3.1:66728389-66728408 | None:intergenic | 30.0% | |
| TGAAACCACAGATACAATAT+AGG | + | chr3.1:66728109-66728128 | None:intergenic | 30.0% | |
| TGTAGCAATGAAATACCAAA+TGG | + | chr3.1:66729468-66729487 | None:intergenic | 30.0% | |
| TGTGATTAAAACCACATCAA+AGG | + | chr3.1:66727719-66727738 | None:intergenic | 30.0% | |
| TGTTTGGACATATTATTGTG+TGG | - | chr3.1:66726339-66726358 | MS.gene70477:CDS | 30.0% | |
| ! | AATAGATATAGCGTTGGAAA+GGG | - | chr3.1:66728391-66728410 | MS.gene70477:intron | 30.0% |
| ! | ATATCAAATGGCTTTTCTTG+AGG | + | chr3.1:66727152-66727171 | None:intergenic | 30.0% |
| ! | ATTGAGGAATGCATTTTCAA+AGG | - | chr3.1:66728816-66728835 | MS.gene70477:CDS | 30.0% |
| ! | CAACTTTTCGACGAAAATTT+AGG | - | chr3.1:66729524-66729543 | MS.gene70477:intron | 30.0% |
| ! | CACTTTGTAATAGAGAGTAT+TGG | + | chr3.1:66728296-66728315 | None:intergenic | 30.0% |
| ! | CTAAATTTTCGTCGAAAAGT+TGG | + | chr3.1:66729526-66729545 | None:intergenic | 30.0% |
| ! | TAATAGATATAGCGTTGGAA+AGG | - | chr3.1:66728390-66728409 | MS.gene70477:intron | 30.0% |
| ! | TATCAAATGGCTTTTCTTGA+GGG | + | chr3.1:66727151-66727170 | None:intergenic | 30.0% |
| !! | AATCGTTATTTTGCAGGTAT+GGG | - | chr3.1:66728722-66728741 | MS.gene70477:intron | 30.0% |
| !! | GAAAAGAATCGTTATTTTGC+AGG | - | chr3.1:66728716-66728735 | MS.gene70477:intron | 30.0% |
| !! | GTGCATGCTTTGTATTTTTA+CGG | + | chr3.1:66728515-66728534 | None:intergenic | 30.0% |
| !! | TTACGTAAGTTTGTTTTCGA+CGG | - | chr3.1:66728437-66728456 | MS.gene70477:intron | 30.0% |
| !! | TTGAAAGAACTTGTTATGAG+AGG | - | chr3.1:66729146-66729165 | MS.gene70477:intron | 30.0% |
| !!! | AATTCTAGTTTCTGCTTTTG+TGG | - | chr3.1:66726683-66726702 | MS.gene70477:CDS | 30.0% |
| !!! | TTTTTAGGTGGAATTGGATA+TGG | - | chr3.1:66726572-66726591 | MS.gene70477:intron | 30.0% |
| AAAACGATATACCAGAGGAT+TGG | - | chr3.1:66729171-66729190 | MS.gene70477:intron | 35.0% | |
| AAACGATATACCAGAGGATT+GGG | - | chr3.1:66729172-66729191 | MS.gene70477:intron | 35.0% | |
| AAAGAAAATTGGATAGCACC+TGG | + | chr3.1:66728187-66728206 | None:intergenic | 35.0% | |
| AAGAAAATTGGATAGCACCT+GGG | + | chr3.1:66728186-66728205 | None:intergenic | 35.0% | |
| AATTGAAACAAGCTGTACAG+TGG | - | chr3.1:66727055-66727074 | MS.gene70477:CDS | 35.0% | |
| ACCTCAAAAGTTGAAAGAAG+AGG | + | chr3.1:66726608-66726627 | None:intergenic | 35.0% | |
| ACTACCGGCAAAATTATCAA+AGG | + | chr3.1:66726536-66726555 | None:intergenic | 35.0% | |
| ACTTATTTATGATGCCAGGA+TGG | - | chr3.1:66727020-66727039 | MS.gene70477:CDS | 35.0% | |
| ATAGAACTGACAAGGATGAA+TGG | - | chr3.1:66729026-66729045 | MS.gene70477:intron | 35.0% | |
| ATCCTCTAAACAGCATGTAA+GGG | + | chr3.1:66727762-66727781 | None:intergenic | 35.0% | |
| ATTACAAAGTGAAGTTCGTG+TGG | - | chr3.1:66728305-66728324 | MS.gene70477:intron | 35.0% | |
| ATTCCAATGGAATGAAAGCA+TGG | + | chr3.1:66728958-66728977 | None:intergenic | 35.0% | |
| CAATGAAATACCAAATGGGA+AGG | + | chr3.1:66729463-66729482 | None:intergenic | 35.0% | |
| CATACTTCTCGATTGTTGTA+GGG | + | chr3.1:66728613-66728632 | None:intergenic | 35.0% | |
| CCACCATGACTATGTAATTT+AGG | - | chr3.1:66726730-66726749 | MS.gene70477:CDS | 35.0% | |
| CCTAAATTACATAGTCATGG+TGG | + | chr3.1:66726733-66726752 | None:intergenic | 35.0% | |
| CTGATGATATAGAACTGACA+AGG | - | chr3.1:66729018-66729037 | MS.gene70477:intron | 35.0% | |
| CTTGAGAGGAAAAAACTTGA+AGG | - | chr3.1:66728534-66728553 | MS.gene70477:intron | 35.0% | |
| GAAGAGACTATTAGAAGACT+TGG | - | chr3.1:66727783-66727802 | MS.gene70477:CDS | 35.0% | |
| GATAGTTAAGCTAGAAAAGG+AGG | + | chr3.1:66726986-66727005 | None:intergenic | 35.0% | |
| GATGGCATGGTAAAGAAAAT+TGG | + | chr3.1:66728198-66728217 | None:intergenic | 35.0% | |
| GATTTACTCTACTTGAGAGA+AGG | - | chr3.1:66728150-66728169 | MS.gene70477:CDS | 35.0% | |
| GGAAATTCAGCTGTTATCAT+TGG | - | chr3.1:66726298-66726317 | MS.gene70477:CDS | 35.0% | |
| GGCAAAATTATCAAAGGAAC+CGG | + | chr3.1:66726530-66726549 | None:intergenic | 35.0% | |
| GTTTGCCTATATTGTATCTG+TGG | - | chr3.1:66728101-66728120 | MS.gene70477:CDS | 35.0% | |
| TAAGCATCAAATTACCAGCT+TGG | - | chr3.1:66728853-66728872 | MS.gene70477:CDS | 35.0% | |
| TAGCATATGCATCAAGAATG+TGG | + | chr3.1:66729428-66729447 | None:intergenic | 35.0% | |
| TCATACTTCTCGATTGTTGT+AGG | + | chr3.1:66728614-66728633 | None:intergenic | 35.0% | |
| TGATGGTCTGATAAGTGTAA+AGG | - | chr3.1:66728791-66728810 | MS.gene70477:CDS | 35.0% | |
| TGCAACTTATTTATGATGCC+AGG | - | chr3.1:66727016-66727035 | MS.gene70477:CDS | 35.0% | |
| TGCTCTTTCATGATCAGTAA+AGG | + | chr3.1:66729086-66729105 | None:intergenic | 35.0% | |
| TTACAAAGTGAAGTTCGTGT+GGG | - | chr3.1:66728306-66728325 | MS.gene70477:intron | 35.0% | |
| TTACACTTATCAGACCATCA+CGG | + | chr3.1:66728791-66728810 | None:intergenic | 35.0% | |
| ! | AACAATCGAGAAGTATGAAG+TGG | - | chr3.1:66728616-66728635 | MS.gene70477:intron | 35.0% |
| ! | ACACATTCAGTTTCTAGGAA+AGG | + | chr3.1:66727823-66727842 | None:intergenic | 35.0% |
| ! | AGACTATTAGAAGACTTGGT+TGG | - | chr3.1:66727787-66727806 | MS.gene70477:CDS | 35.0% |
| ! | AGAGTGTTTGAGTGGTTTAT+TGG | - | chr3.1:66729059-66729078 | MS.gene70477:intron | 35.0% |
| ! | ATCAAATCGTGATTCGGATT+AGG | - | chr3.1:66727274-66727293 | MS.gene70477:CDS | 35.0% |
| ! | TCATGGTGGCAAAATTTTCA+AGG | + | chr3.1:66726719-66726738 | None:intergenic | 35.0% |
| ! | TCCTCTTCTTTCAACTTTTG+AGG | - | chr3.1:66726604-66726623 | MS.gene70477:intron | 35.0% |
| !! | GAATCGTTATTTTGCAGGTA+TGG | - | chr3.1:66728721-66728740 | MS.gene70477:intron | 35.0% |
| !! | GGTTCCTTTGATAATTTTGC+CGG | - | chr3.1:66726529-66726548 | MS.gene70477:intron | 35.0% |
| !! | TTGATAATTTTGCCGGTAGT+TGG | - | chr3.1:66726536-66726555 | MS.gene70477:intron | 35.0% |
| !!! | ATTGTTGGTAGCTTTTTAGG+TGG | - | chr3.1:66726560-66726579 | MS.gene70477:intron | 35.0% |
| !!! | CTTTCAACTTTTGAGGTTGT+TGG | - | chr3.1:66726611-66726630 | MS.gene70477:intron | 35.0% |
| !!! | GGTATTGTTGGTAGCTTTTT+AGG | - | chr3.1:66726557-66726576 | MS.gene70477:intron | 35.0% |
| !!! | TTTTTTCTTAGCCTATACGG+TGG | - | chr3.1:66727919-66727938 | MS.gene70477:intron | 35.0% |
| AGAATCACCAACAAGCAACA+TGG | + | chr3.1:66727685-66727704 | None:intergenic | 40.0% | |
| AGGCAAAAACGATATACCAG+AGG | - | chr3.1:66729166-66729185 | MS.gene70477:intron | 40.0% | |
| AGTTAGAAGACACTGTAGCA+AGG | + | chr3.1:66728880-66728899 | None:intergenic | 40.0% | |
| ATACAAAGCATGCACTTGAG+AGG | - | chr3.1:66728520-66728539 | MS.gene70477:intron | 40.0% | |
| ATATAAACCTGTGCAGGTGA+TGG | - | chr3.1:66728650-66728669 | MS.gene70477:intron | 40.0% | |
| ATGCCATGCTTTCATTCCAT+TGG | - | chr3.1:66728952-66728971 | MS.gene70477:intron | 40.0% | |
| ATGGGACACATTCAGTTTCT+AGG | + | chr3.1:66727828-66727847 | None:intergenic | 40.0% | |
| ATTTCATTGCTACAGGTTGC+AGG | - | chr3.1:66729474-66729493 | MS.gene70477:intron | 40.0% | |
| CAATCTCACTCATCAATCGT+TGG | - | chr3.1:66726442-66726461 | MS.gene70477:intron | 40.0% | |
| CACTCAAACACTCTATCCTT+TGG | + | chr3.1:66729053-66729072 | None:intergenic | 40.0% | |
| CAGCTGTTATCATTGGACTT+TGG | - | chr3.1:66726305-66726324 | MS.gene70477:CDS | 40.0% | |
| CATCCTCTAAACAGCATGTA+AGG | + | chr3.1:66727763-66727782 | None:intergenic | 40.0% | |
| CCTCTTTGTTCTGTTGTCAA+AGG | + | chr3.1:66726468-66726487 | None:intergenic | 40.0% | |
| CCTTTGACAACAGAACAAAG+AGG | - | chr3.1:66726465-66726484 | MS.gene70477:intron | 40.0% | |
| CTACCAACAATACCAACTAC+CGG | + | chr3.1:66726551-66726570 | None:intergenic | 40.0% | |
| GACAACAGAACAAAGAGGTT+TGG | - | chr3.1:66726470-66726489 | MS.gene70477:intron | 40.0% | |
| GGACATATTATTGTGTGGCA+AGG | - | chr3.1:66726344-66726363 | MS.gene70477:CDS | 40.0% | |
| TCAGCAATATAAACCTGTGC+AGG | - | chr3.1:66728644-66728663 | MS.gene70477:intron | 40.0% | |
| TCGCACTTTAACTAACCTGA+TGG | + | chr3.1:66727954-66727973 | None:intergenic | 40.0% | |
| TGTTTCAACTCCTTCCCATT+TGG | - | chr3.1:66729450-66729469 | MS.gene70477:intron | 40.0% | |
| TTCAAGTCGTGTGAGGTAAA+CGG | - | chr3.1:66728753-66728772 | MS.gene70477:CDS | 40.0% | |
| TTTCATTGCTACAGGTTGCA+GGG | - | chr3.1:66729475-66729494 | MS.gene70477:intron | 40.0% | |
| TTTGGACTGCACATGTTGTT+TGG | - | chr3.1:66726323-66726342 | MS.gene70477:CDS | 40.0% | |
| ! | ACTGTTACCATGTTGCTTGT+TGG | - | chr3.1:66727675-66727694 | MS.gene70477:intron | 40.0% |
| ! | AGAAGACTTGGTTGGAAGAA+GGG | - | chr3.1:66727795-66727814 | MS.gene70477:CDS | 40.0% |
| ! | ATTTTTACGGTATACTGGCC+TGG | + | chr3.1:66728502-66728521 | None:intergenic | 40.0% |
| ! | CAAAGGATAGAGTGTTTGAG+TGG | - | chr3.1:66729051-66729070 | MS.gene70477:intron | 40.0% |
| ! | CTTACATGCTGTTTAGAGGA+TGG | - | chr3.1:66727761-66727780 | MS.gene70477:CDS | 40.0% |
| ! | TAGAAGACTTGGTTGGAAGA+AGG | - | chr3.1:66727794-66727813 | MS.gene70477:CDS | 40.0% |
| !! | ATGTTGCTTGTTGGTGATTC+TGG | - | chr3.1:66727684-66727703 | MS.gene70477:intron | 40.0% |
| !! | TGGACTAGTGTTCAAGATTG+TGG | - | chr3.1:66726490-66726509 | MS.gene70477:intron | 40.0% |
| !! | TGTGGTGTTGATATGTTTGC+CGG | - | chr3.1:66726508-66726527 | MS.gene70477:intron | 40.0% |
| !! | TTATTTTGCAGGTATGGGAC+TGG | - | chr3.1:66728727-66728746 | MS.gene70477:intron | 40.0% |
| !!! | GGTAGCTTTTTAGGTGGAAT+TGG | - | chr3.1:66726566-66726585 | MS.gene70477:intron | 40.0% |
| AAAAGTTGGCATCCGAGACA+TGG | + | chr3.1:66729512-66729531 | None:intergenic | 45.0% | |
| AAATTGGATAGCACCTGGGA+AGG | + | chr3.1:66728182-66728201 | None:intergenic | 45.0% | |
| AACAAGCTGTACAGTGGTTC+AGG | - | chr3.1:66727061-66727080 | MS.gene70477:CDS | 45.0% | |
| AAGTAGTACTTGTGACAGCC+AGG | - | chr3.1:66728481-66728500 | MS.gene70477:intron | 45.0% | |
| ACTGAATGTGTCCCATTTGC+TGG | - | chr3.1:66727832-66727851 | MS.gene70477:intron | 45.0% | |
| ATGATGGCAAGACCAGCAAA+TGG | + | chr3.1:66727847-66727866 | None:intergenic | 45.0% | |
| GACAAGGATGAATGGACCAA+AGG | - | chr3.1:66729034-66729053 | MS.gene70477:intron | 45.0% | |
| GCAGCTTAAGAATCTTGAGC+TGG | - | chr3.1:66729103-66729122 | MS.gene70477:intron | 45.0% | |
| TAGGAGGACTCACTGAAGAT+GGG | - | chr3.1:66728078-66728097 | MS.gene70477:CDS | 45.0% | |
| TATGATGCCAGGATGGTTGT+TGG | - | chr3.1:66727027-66727046 | MS.gene70477:CDS | 45.0% | |
| TGATGGCAAGACCAGCAAAT+GGG | + | chr3.1:66727846-66727865 | None:intergenic | 45.0% | |
| TTCATTGCTACAGGTTGCAG+GGG | - | chr3.1:66729476-66729495 | MS.gene70477:intron | 45.0% | |
| TTGTTGACCAACAACCATCC+TGG | + | chr3.1:66727037-66727056 | None:intergenic | 45.0% | |
| ! | AGCCCTTACATGCTGTTTAG+AGG | - | chr3.1:66727757-66727776 | MS.gene70477:CDS | 45.0% |
| ! | GAAGACTTGGTTGGAAGAAG+GGG | - | chr3.1:66727796-66727815 | MS.gene70477:CDS | 45.0% |
| ! | TTGCCGGTAGTTGGTATTGT+TGG | - | chr3.1:66726545-66726564 | MS.gene70477:intron | 45.0% |
| ! | TTGTTTTCGACGGCGAACAT+TGG | - | chr3.1:66728447-66728466 | MS.gene70477:intron | 45.0% |
| !! | GCTTGTTGGTGATTCTGGTT+GGG | - | chr3.1:66727689-66727708 | MS.gene70477:intron | 45.0% |
| !! | TGCTTGTTGGTGATTCTGGT+TGG | - | chr3.1:66727688-66727707 | MS.gene70477:intron | 45.0% |
| !!! | CTGGTTTTTCAAGTCGTGTG+AGG | - | chr3.1:66728746-66728765 | MS.gene70477:CDS | 45.0% |
| ACAGCACCTAGAACAGCCAA+AGG | + | chr3.1:66727877-66727896 | None:intergenic | 50.0% | |
| AGCCAAAGGCCAAAGGATGA+TGG | + | chr3.1:66727863-66727882 | None:intergenic | 50.0% | |
| AGGAGGACTCACTGAAGATG+GGG | - | chr3.1:66728079-66728098 | MS.gene70477:CDS | 50.0% | |
| CACTTATCAGACCATCACGG+AGG | + | chr3.1:66728788-66728807 | None:intergenic | 50.0% | |
| CATGTTACCATCACCTGCAC+AGG | + | chr3.1:66728660-66728679 | None:intergenic | 50.0% | |
| CTAGAACAGCCAAAGGCCAA+AGG | + | chr3.1:66727870-66727889 | None:intergenic | 50.0% | |
| GCCAGTGCTTCAGCTAAAGA+AGG | - | chr3.1:66729583-66729602 | MS.gene70477:CDS | 50.0% | |
| GCCTTCTTTAGCTGAAGCAC+TGG | + | chr3.1:66729587-66729606 | None:intergenic | 50.0% | |
| GGATCGTGTCTTCCATGTCT+CGG | - | chr3.1:66729497-66729516 | MS.gene70477:intron | 50.0% | |
| GTAGGAGGACTCACTGAAGA+TGG | - | chr3.1:66728077-66728096 | MS.gene70477:CDS | 50.0% | |
| ! | CTTTGGCCTTTGGCTGTTCT+AGG | - | chr3.1:66727868-66727887 | MS.gene70477:intron | 50.0% |
| ! | TGCCATCATCCTTTGGCCTT+TGG | - | chr3.1:66727858-66727877 | MS.gene70477:intron | 50.0% |
| !! | CTGGTCTTGCCATCATCCTT+TGG | - | chr3.1:66727851-66727870 | MS.gene70477:intron | 50.0% |
| AGTCGTGTGAGGTAAACGGC+CGG | - | chr3.1:66728757-66728776 | MS.gene70477:CDS | 55.0% | |
| CACTGTAGCAAGGACCAAGC+TGG | + | chr3.1:66728870-66728889 | None:intergenic | 55.0% | |
| CCAGAGGATTGGGATAGCAC+TGG | - | chr3.1:66729182-66729201 | MS.gene70477:intron | 55.0% | |
| CCAGTGCTATCCCAATCCTC+TGG | + | chr3.1:66729185-66729204 | None:intergenic | 55.0% | |
| GACCATCACGGAGGACTATC+CGG | + | chr3.1:66728779-66728798 | None:intergenic | 55.0% | |
| GGACAACGACTCCACCGTAT+AGG | + | chr3.1:66727933-66727952 | None:intergenic | 55.0% | |
| GGTTGGGATGCCCTTTGATG+TGG | - | chr3.1:66727705-66727724 | MS.gene70477:intron | 55.0% | |
| CGGTGGAGTCGTTGTCCATC+AGG | - | chr3.1:66727936-66727955 | MS.gene70477:intron | 60.0% | |
| GAGAAGGATCCTGCCTTCCC+AGG | - | chr3.1:66728166-66728185 | MS.gene70477:CDS | 60.0% | |
| TGGATAGCACCTGGGAAGGC+AGG | + | chr3.1:66728178-66728197 | None:intergenic | 60.0% | |
| GGCCGGATAGTCCTCCGTGA+TGG | - | chr3.1:66728774-66728793 | MS.gene70477:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 66726289 | 66729627 | 66726289 | ID=MS.gene70477 |
| chr3.1 | mRNA | 66726289 | 66729627 | 66726289 | ID=MS.gene70477.t1;Parent=MS.gene70477 |
| chr3.1 | exon | 66729551 | 66729627 | 66729551 | ID=MS.gene70477.t1.exon1;Parent=MS.gene70477.t1 |
| chr3.1 | CDS | 66729551 | 66729627 | 66729551 | ID=cds.MS.gene70477.t1;Parent=MS.gene70477.t1 |
| chr3.1 | exon | 66729246 | 66729438 | 66729246 | ID=MS.gene70477.t1.exon2;Parent=MS.gene70477.t1 |
| chr3.1 | CDS | 66729246 | 66729438 | 66729246 | ID=cds.MS.gene70477.t1;Parent=MS.gene70477.t1 |
| chr3.1 | exon | 66728742 | 66728878 | 66728742 | ID=MS.gene70477.t1.exon3;Parent=MS.gene70477.t1 |
| chr3.1 | CDS | 66728742 | 66728878 | 66728742 | ID=cds.MS.gene70477.t1;Parent=MS.gene70477.t1 |
| chr3.1 | exon | 66727959 | 66728247 | 66727959 | ID=MS.gene70477.t1.exon4;Parent=MS.gene70477.t1 |
| chr3.1 | CDS | 66727959 | 66728247 | 66727959 | ID=cds.MS.gene70477.t1;Parent=MS.gene70477.t1 |
| chr3.1 | exon | 66727729 | 66727835 | 66727729 | ID=MS.gene70477.t1.exon5;Parent=MS.gene70477.t1 |
| chr3.1 | CDS | 66727729 | 66727835 | 66727729 | ID=cds.MS.gene70477.t1;Parent=MS.gene70477.t1 |
| chr3.1 | exon | 66727251 | 66727413 | 66727251 | ID=MS.gene70477.t1.exon6;Parent=MS.gene70477.t1 |
| chr3.1 | CDS | 66727251 | 66727413 | 66727251 | ID=cds.MS.gene70477.t1;Parent=MS.gene70477.t1 |
| chr3.1 | exon | 66726983 | 66727178 | 66726983 | ID=MS.gene70477.t1.exon7;Parent=MS.gene70477.t1 |
| chr3.1 | CDS | 66726983 | 66727178 | 66726983 | ID=cds.MS.gene70477.t1;Parent=MS.gene70477.t1 |
| chr3.1 | exon | 66726658 | 66726898 | 66726658 | ID=MS.gene70477.t1.exon8;Parent=MS.gene70477.t1 |
| chr3.1 | CDS | 66726658 | 66726898 | 66726658 | ID=cds.MS.gene70477.t1;Parent=MS.gene70477.t1 |
| chr3.1 | exon | 66726289 | 66726427 | 66726289 | ID=MS.gene70477.t1.exon9;Parent=MS.gene70477.t1 |
| chr3.1 | CDS | 66726289 | 66726427 | 66726289 | ID=cds.MS.gene70477.t1;Parent=MS.gene70477.t1 |
| Gene Sequence |
| Protein sequence |
