Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70564.t1 | XP_003601301.1 | 94.2 | 747 | 16 | 1 | 1 | 720 | 1 | 747 | 0.00E+00 | 1416.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70564.t1 | Q304B9 | 59.0 | 737 | 253 | 9 | 26 | 719 | 26 | 756 | 7.5e-244 | 844.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70564.t1 | G7J608 | 94.2 | 747 | 16 | 1 | 1 | 720 | 1 | 747 | 0.0e+00 | 1416.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052302 | MS.gene70564 | 0.801749 | 7.77E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene70564 | 0.806207 | 9.20E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70564.t1 | MTR_3g079190 | 94.244 | 747 | 16 | 1 | 1 | 720 | 1 | 747 | 0.0 | 1452 |
| MS.gene70564.t1 | MTR_5g096890 | 58.389 | 745 | 251 | 12 | 26 | 719 | 40 | 776 | 0.0 | 850 |
| MS.gene70564.t1 | MTR_3g061720 | 55.496 | 746 | 272 | 13 | 25 | 719 | 42 | 778 | 0.0 | 790 |
| MS.gene70564.t1 | MTR_3g061720 | 55.496 | 746 | 272 | 13 | 25 | 719 | 25 | 761 | 0.0 | 790 |
| MS.gene70564.t1 | MTR_3g061720 | 52.067 | 774 | 284 | 14 | 25 | 719 | 42 | 807 | 0.0 | 753 |
| MS.gene70564.t1 | MTR_5g096890 | 59.788 | 567 | 175 | 7 | 26 | 543 | 40 | 602 | 0.0 | 679 |
| MS.gene70564.t1 | MTR_3g061720 | 45.590 | 669 | 309 | 18 | 70 | 719 | 176 | 808 | 3.12e-172 | 514 |
| MS.gene70564.t1 | MTR_3g061720 | 65.909 | 220 | 73 | 2 | 25 | 244 | 42 | 259 | 2.14e-91 | 303 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70564.t1 | AT2G38010 | 59.471 | 718 | 243 | 8 | 26 | 700 | 26 | 738 | 0.0 | 856 |
| MS.gene70564.t1 | AT2G38010 | 59.471 | 718 | 243 | 8 | 26 | 700 | 26 | 738 | 0.0 | 856 |
| MS.gene70564.t1 | AT1G07380 | 57.048 | 752 | 263 | 11 | 22 | 719 | 34 | 779 | 0.0 | 825 |
| MS.gene70564.t1 | AT1G07380 | 57.048 | 752 | 263 | 11 | 22 | 719 | 33 | 778 | 0.0 | 824 |
| MS.gene70564.t1 | AT5G58980 | 58.881 | 715 | 264 | 15 | 25 | 719 | 28 | 732 | 0.0 | 814 |
| MS.gene70564.t1 | AT2G38010 | 58.170 | 459 | 183 | 5 | 248 | 700 | 318 | 773 | 0.0 | 551 |
| MS.gene70564.t1 | AT2G38010 | 73.059 | 219 | 57 | 2 | 26 | 244 | 26 | 242 | 2.96e-101 | 328 |
Find 172 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGTGCTGTGGAACTATT+TGG | 0.174103 | 3.1:-64672789 | MS.gene70564:CDS |
| GTGCTAGTTTGTTGAATTCT+TGG | 0.174929 | 3.1:+64671635 | None:intergenic |
| CTGTGCAGATTAGTCCATTT+TGG | 0.176563 | 3.1:-64672403 | MS.gene70564:intron |
| TTCACCTGTGTTTATAATAA+TGG | 0.201096 | 3.1:+64673767 | None:intergenic |
| AAGGCCAATTATTACTGTTT+TGG | 0.220490 | 3.1:-64674636 | MS.gene70564:CDS |
| TCTCTTACATTCTTCCAAAA+TGG | 0.227152 | 3.1:+64672389 | None:intergenic |
| ACAAAACTGGCTTAGGGTTT+TGG | 0.264670 | 3.1:+64672330 | None:intergenic |
| GTAGACAATACTTCCTTTCA+TGG | 0.272123 | 3.1:-64671289 | MS.gene70564:CDS |
| TTTGTACTTAATATTTCATT+TGG | 0.277307 | 3.1:+64672834 | None:intergenic |
| ATACCAACAGATGCAATTTC+TGG | 0.279688 | 3.1:-64671244 | MS.gene70564:CDS |
| ACAAAATGCTCCAACAAATA+AGG | 0.285179 | 3.1:+64673058 | None:intergenic |
| ATTGAATTCTCCATTGCTAT+TGG | 0.287615 | 3.1:+64671912 | None:intergenic |
| AAACCCAAAACAGTAATAAT+TGG | 0.290038 | 3.1:+64674632 | None:intergenic |
| TGAAGGAAGCAAGTATAAAT+AGG | 0.300507 | 3.1:-64673543 | MS.gene70564:CDS |
| TCCAATTCAGATTCTGAGAT+TGG | 0.303780 | 3.1:-64672143 | MS.gene70564:CDS |
| TCTGCTTCAGAGGAACTTAA+AGG | 0.306477 | 3.1:-64672765 | MS.gene70564:CDS |
| TGTTGGTATTTCCCATTCTA+TGG | 0.307318 | 3.1:+64671258 | None:intergenic |
| ACACATGGTGAGTACTTAAT+TGG | 0.307925 | 3.1:-64674581 | MS.gene70564:CDS |
| TTTGTAAAATAACCGCTTCC+TGG | 0.324870 | 3.1:+64671463 | None:intergenic |
| TACAAACATTGAAGTAGAAT+TGG | 0.327128 | 3.1:-64672709 | MS.gene70564:CDS |
| AAAATCCAGCCAAGCATCTA+AGG | 0.337666 | 3.1:-64673099 | MS.gene70564:CDS |
| ATCTGAATTGGAAGAATTGC+TGG | 0.340954 | 3.1:+64672154 | None:intergenic |
| CTGCTTAACAAAACTGGCTT+AGG | 0.349379 | 3.1:+64672323 | None:intergenic |
| CCCAATCTCAGAATCTGAAT+TGG | 0.349958 | 3.1:+64672142 | None:intergenic |
| ATATTAAGTACAAAGATTAT+AGG | 0.353627 | 3.1:-64672825 | MS.gene70564:CDS |
| GCACCGGTAAAGTAATTGAT+AGG | 0.353986 | 3.1:+64671172 | None:intergenic |
| AGCTTCTTACTTGATCCCTT+TGG | 0.355900 | 3.1:-64671541 | MS.gene70564:CDS |
| TCCCCTATCAATTACTTTAC+CGG | 0.357390 | 3.1:-64671175 | MS.gene70564:CDS |
| GTTTACTCTGTAACCTCTCT+TGG | 0.359797 | 3.1:-64673873 | MS.gene70564:CDS |
| TCTCCACTGCTTAACAAAAC+TGG | 0.365586 | 3.1:+64672317 | None:intergenic |
| CTTTGTGTTGGAAGGGGACC+AGG | 0.365852 | 3.1:-64672930 | MS.gene70564:CDS |
| AATGAATACCAGCTGTGTTC+TGG | 0.370466 | 3.1:+64674492 | None:intergenic |
| CACTGTCCACAAATTTCAAA+AGG | 0.378431 | 3.1:+64673446 | None:intergenic |
| GTAATTGATAGGGGAGACTA+TGG | 0.379103 | 3.1:+64671183 | None:intergenic |
| AAAGAAGATATAGCATTTCC+AGG | 0.382683 | 3.1:-64671481 | MS.gene70564:CDS |
| TCTGTTAGAAGATCATATCT+TGG | 0.387180 | 3.1:+64671403 | None:intergenic |
| AATGATGGATCCTTATTTGT+TGG | 0.390682 | 3.1:-64673068 | MS.gene70564:CDS |
| ATTGTTGCTGAGAATCTTCA+AGG | 0.396783 | 3.1:-64674446 | MS.gene70564:CDS |
| GGCGATAAAATCAATGGAAA+TGG | 0.402461 | 3.1:-64671598 | MS.gene70564:CDS |
| CCAATTCAGATTCTGAGATT+GGG | 0.402613 | 3.1:-64672142 | MS.gene70564:CDS |
| GAAACGCATGTCGTTATTGC+AGG | 0.407247 | 3.1:-64671886 | MS.gene70564:CDS |
| GTATGGTCCTCACACATTAT+CGG | 0.408855 | 3.1:-64671665 | MS.gene70564:CDS |
| GATGTGTCACCAAATGTATT+AGG | 0.414494 | 3.1:-64673020 | MS.gene70564:CDS |
| TCAAGGGGAAAGATGGATTC+CGG | 0.414896 | 3.1:-64671353 | MS.gene70564:CDS |
| AAACCAGGACCGAGAGCTGC+AGG | 0.422270 | 3.1:+64672660 | None:intergenic |
| CAAAACGCTCCTAATACATT+TGG | 0.427245 | 3.1:+64673011 | None:intergenic |
| ATAAACCAAGTGCTACATTC+TGG | 0.428038 | 3.1:-64671435 | MS.gene70564:CDS |
| GAAGTGCTGTGGAACTATTT+GGG | 0.428618 | 3.1:-64672788 | MS.gene70564:CDS |
| ATGGTTTCGCTACCATAGAA+TGG | 0.429554 | 3.1:-64671270 | MS.gene70564:CDS |
| TTACAACAATGGCGGGTAGA+AGG | 0.431329 | 3.1:-64671966 | MS.gene70564:CDS |
| TTGTACTTAATATTTCATTT+GGG | 0.434449 | 3.1:+64672835 | None:intergenic |
| TGCCCTGCAGCTCTCGGTCC+TGG | 0.437187 | 3.1:-64672663 | MS.gene70564:CDS |
| CCTCACCTTAGATGCTTGGC+TGG | 0.439190 | 3.1:+64673094 | None:intergenic |
| AGACTTACCGCCCAAGGATA+AGG | 0.446152 | 3.1:+64672284 | None:intergenic |
| AAGCTTGTTGTTATTGCTCA+TGG | 0.451203 | 3.1:+64673372 | None:intergenic |
| AAGGCTAAGGGAGGCAGTAA+AGG | 0.457222 | 3.1:-64671947 | MS.gene70564:CDS |
| CTGAGAATCTTCAAGGTCCT+AGG | 0.457266 | 3.1:-64674439 | MS.gene70564:CDS |
| ATATCATCAGCAACGGTATG+AGG | 0.459456 | 3.1:-64671821 | MS.gene70564:intron |
| TGCATTAGCAATGGCATCAA+AGG | 0.462848 | 3.1:+64673836 | None:intergenic |
| CAGGCTGCATCTACTCTGTA+TGG | 0.465846 | 3.1:-64671682 | MS.gene70564:CDS |
| TACCTTGATCTCTCCTCTGC+AGG | 0.467350 | 3.1:+64673496 | None:intergenic |
| GCTTCAGTGGAAAGGCTTCA+AGG | 0.467474 | 3.1:-64671370 | MS.gene70564:CDS |
| GCTAAAGGCGATAAAATCAA+TGG | 0.472831 | 3.1:-64671604 | MS.gene70564:CDS |
| CTGATAATTCTTTCTGTACC+AGG | 0.476039 | 3.1:-64672115 | MS.gene70564:CDS |
| ATTCATACACATGCTGGCCC+TGG | 0.477123 | 3.1:-64673915 | MS.gene70564:CDS |
| ATGACCTTCTTTGTGTTGGA+AGG | 0.477151 | 3.1:-64672938 | MS.gene70564:CDS |
| GTTGCAATCCTTTCCACCTG+TGG | 0.477959 | 3.1:+64673124 | None:intergenic |
| TGGTTTCGCTACCATAGAAT+GGG | 0.478765 | 3.1:-64671269 | MS.gene70564:CDS |
| AATGTTCGATCCTTATCCTT+GGG | 0.478819 | 3.1:-64672294 | MS.gene70564:CDS |
| AAATGTTCGATCCTTATCCT+TGG | 0.479759 | 3.1:-64672295 | MS.gene70564:CDS |
| AAATCATCATCATCATGAAC+CGG | 0.482022 | 3.1:+64671334 | None:intergenic |
| CAGTCCACTTGATATTGACT+TGG | 0.483254 | 3.1:+64672353 | None:intergenic |
| GGCAATGACCTTCTTTGTGT+TGG | 0.490915 | 3.1:-64672942 | MS.gene70564:CDS |
| GGTGAGTACTTAATTGGAGT+TGG | 0.492097 | 3.1:-64674575 | MS.gene70564:CDS |
| TTCAACCATTCTTCATGCAA+TGG | 0.494081 | 3.1:-64672963 | MS.gene70564:CDS |
| GTACAAAGATTATAGGAGAA+AGG | 0.497087 | 3.1:-64672818 | MS.gene70564:CDS |
| GATATAGCATTTCCAGGAAG+CGG | 0.500504 | 3.1:-64671475 | MS.gene70564:CDS |
| TCACCGAGTTTAATTCCGTC+AGG | 0.503386 | 3.1:+64671508 | None:intergenic |
| TGCTGCTGATGTGAACATGA+TGG | 0.505520 | 3.1:-64674531 | MS.gene70564:CDS |
| GACCTTCTTTGTGTTGGAAG+GGG | 0.506339 | 3.1:-64672936 | MS.gene70564:CDS |
| CTGCTTCAGAGGAACTTAAA+GGG | 0.508256 | 3.1:-64672764 | MS.gene70564:CDS |
| TGTCAATCTAGATGCTGGAA+TGG | 0.508912 | 3.1:-64674408 | MS.gene70564:CDS |
| TGGCGGTTATCTGCAGTATG+TGG | 0.513297 | 3.1:-64673895 | MS.gene70564:CDS |
| TGCTTAACAAAACTGGCTTA+GGG | 0.515851 | 3.1:+64672324 | None:intergenic |
| CTAGCACAAGCAATGGCTAA+AGG | 0.516506 | 3.1:-64671619 | MS.gene70564:CDS |
| AAAGTAAAGGATCATTCAGC+TGG | 0.517656 | 3.1:-64673414 | MS.gene70564:CDS |
| AAAGGCTTCAAGGGGAAAGA+TGG | 0.518945 | 3.1:-64671360 | MS.gene70564:CDS |
| CTTCAGTGGAAAGGCTTCAA+GGG | 0.519411 | 3.1:-64671369 | MS.gene70564:CDS |
| CAATGGCGGGTAGAAGGCTA+AGG | 0.520119 | 3.1:-64671960 | MS.gene70564:CDS |
| ACTATTTGGGTCTGCTTCAG+AGG | 0.522424 | 3.1:-64672775 | MS.gene70564:CDS |
| GCTTATCAGCGGAGATAACA+AGG | 0.524750 | 3.1:-64673353 | MS.gene70564:CDS |
| AACATTGACCAGAACACAGC+TGG | 0.525851 | 3.1:-64674500 | MS.gene70564:CDS |
| AAGAAAATGTAGCAATCAGC+GGG | 0.530588 | 3.1:-64673938 | MS.gene70564:CDS |
| TGACCTTCTTTGTGTTGGAA+GGG | 0.530944 | 3.1:-64672937 | MS.gene70564:CDS |
| AAAACATGCCCTGCAGCTCT+CGG | 0.536700 | 3.1:-64672669 | MS.gene70564:CDS |
| GCTTAAAGCCACAGGTGGAA+AGG | 0.539051 | 3.1:-64673132 | MS.gene70564:CDS |
| TTCAGCTGGTTTGCGACACA+CGG | 0.545464 | 3.1:-64673400 | MS.gene70564:CDS |
| AGTGCAAGTGGCAAAAGTAA+AGG | 0.547886 | 3.1:-64673427 | MS.gene70564:CDS |
| TGCAAATGCACTTGAAGCAC+CGG | 0.548441 | 3.1:+64671156 | None:intergenic |
| TTGTTCTACTGCATTAGCAA+TGG | 0.548985 | 3.1:+64673827 | None:intergenic |
| TCAGGAGTTGTGTCTCCAAA+GGG | 0.549250 | 3.1:+64671526 | None:intergenic |
| TCAGAGTTTACAACAATGGC+GGG | 0.552195 | 3.1:-64671973 | MS.gene70564:intron |
| GTCCCCTTCCAACACAAAGA+AGG | 0.552842 | 3.1:+64672934 | None:intergenic |
| CATTGCCATTGCATGAAGAA+TGG | 0.554532 | 3.1:+64672958 | None:intergenic |
| AGCGGGATTCATACACATGC+TGG | 0.554960 | 3.1:-64673921 | MS.gene70564:CDS |
| CACCGGTAAAGTAATTGATA+GGG | 0.555235 | 3.1:+64671173 | None:intergenic |
| ATCCTGCAGAGGAGAGATCA+AGG | 0.555359 | 3.1:-64673498 | MS.gene70564:CDS |
| ATCTGTGTGTCAACATTGGA+AGG | 0.555775 | 3.1:+64673472 | None:intergenic |
| TGTACAGATAAAAGATCTGG+TGG | 0.558762 | 3.1:+64671568 | None:intergenic |
| ACATACTGCAGATAACCGCC+AGG | 0.561795 | 3.1:+64673897 | None:intergenic |
| GGTCATCTGTGTGTCAACAT+TGG | 0.567967 | 3.1:+64673468 | None:intergenic |
| AACTGAAGACTTACCGCCCA+AGG | 0.569281 | 3.1:+64672278 | None:intergenic |
| ATCATGTTCACATCAGCAGC+AGG | 0.569936 | 3.1:+64674533 | None:intergenic |
| ACTGTCCACAAATTTCAAAA+GGG | 0.573545 | 3.1:+64673447 | None:intergenic |
| AGTAGAATTGGACAACAAGA+AGG | 0.574662 | 3.1:-64672697 | MS.gene70564:CDS |
| GTCAGGAGTTGTGTCTCCAA+AGG | 0.576446 | 3.1:+64671525 | None:intergenic |
| TTCAGAGTTTACAACAATGG+CGG | 0.577639 | 3.1:-64671974 | MS.gene70564:intron |
| GTAGTGCCTGCTGCAAAACC+AGG | 0.582081 | 3.1:+64672645 | None:intergenic |
| GCGCAATTGCTTAAAGCCAC+AGG | 0.583005 | 3.1:-64673140 | MS.gene70564:CDS |
| GTACATATGCTTCAGTGGAA+AGG | 0.583417 | 3.1:-64671378 | MS.gene70564:CDS |
| ACTCCAGAAATTGCATCTGT+TGG | 0.585180 | 3.1:+64671241 | None:intergenic |
| TACAGATAAAAGATCTGGTG+GGG | 0.586131 | 3.1:+64671570 | None:intergenic |
| CTTGTTGTTATTGCTCATGG+AGG | 0.586420 | 3.1:+64673375 | None:intergenic |
| AGCTGTGTTCTGGTCAATGT+TGG | 0.586623 | 3.1:+64674502 | None:intergenic |
| AGAACCAAGTCAATATCAAG+TGG | 0.587036 | 3.1:-64672357 | MS.gene70564:CDS |
| GCTCACAATAACCTCAAGCC+TGG | 0.590473 | 3.1:-64673792 | MS.gene70564:CDS |
| GCACTCCAGAATGTAGCACT+TGG | 0.590644 | 3.1:+64671430 | None:intergenic |
| TTGTTTCACAAAACCAAGAG+AGG | 0.591208 | 3.1:+64673860 | None:intergenic |
| AATTTCAGAGTTTACAACAA+TGG | 0.591490 | 3.1:-64671977 | MS.gene70564:intron |
| TTTGGAGACACAACTCCTGA+CGG | 0.591520 | 3.1:-64671523 | MS.gene70564:CDS |
| GTACAGATAAAAGATCTGGT+GGG | 0.591820 | 3.1:+64671569 | None:intergenic |
| GGATTTAGCAGATATGCACT+TGG | 0.593355 | 3.1:+64673517 | None:intergenic |
| GCTGCTGATGTGAACATGAT+GGG | 0.594912 | 3.1:-64674530 | MS.gene70564:CDS |
| AGAAGGTACATATGCTTCAG+TGG | 0.595476 | 3.1:-64671383 | MS.gene70564:CDS |
| TTTGCAGCAGGCACTACAGA+CGG | 0.597895 | 3.1:-64672639 | MS.gene70564:CDS |
| CAACAAACTAGCACAAGCAA+TGG | 0.599914 | 3.1:-64671626 | MS.gene70564:CDS |
| TAATAATGGAACCAGGCTTG+AGG | 0.601505 | 3.1:+64673781 | None:intergenic |
| GGTGCCTTTAGGAGATGTGA+AGG | 0.601878 | 3.1:-64673560 | MS.gene70564:intron |
| GGTTCCATTATTATAAACAC+AGG | 0.602861 | 3.1:-64673771 | MS.gene70564:intron |
| GCAGGCACTACAGACGGACC+AGG | 0.606566 | 3.1:-64672633 | MS.gene70564:CDS |
| TATGGTAGCGAAACCATGAA+AGG | 0.613435 | 3.1:+64671276 | None:intergenic |
| TTGAAGAATATCATCAGCAA+CGG | 0.613829 | 3.1:-64671828 | MS.gene70564:CDS |
| GTGTTTATAATAATGGAACC+AGG | 0.614812 | 3.1:+64673774 | None:intergenic |
| GTGTACAGACTAAAACACTT+TGG | 0.614834 | 3.1:-64671220 | MS.gene70564:CDS |
| AGATATGATCTTCTAACAGA+AGG | 0.615079 | 3.1:-64671400 | MS.gene70564:CDS |
| ACATTAATATCCAATAGCAA+TGG | 0.619593 | 3.1:-64671922 | MS.gene70564:CDS |
| AACCAGGACCGAGAGCTGCA+GGG | 0.621778 | 3.1:+64672661 | None:intergenic |
| AAGGCAATTCAGAAGTGCTG+TGG | 0.622806 | 3.1:-64672799 | MS.gene70564:CDS |
| GTTCGATCCTTATCCTTGGG+CGG | 0.627605 | 3.1:-64672291 | MS.gene70564:intron |
| GAAGAATGGTTGAAATCACA+AGG | 0.629538 | 3.1:+64672972 | None:intergenic |
| TTCAGTGGAAAGGCTTCAAG+GGG | 0.636441 | 3.1:-64671368 | MS.gene70564:CDS |
| ACCGGTAAAGTAATTGATAG+GGG | 0.637420 | 3.1:+64671174 | None:intergenic |
| TTTGTGTTGGAAGGGGACCA+GGG | 0.638806 | 3.1:-64672929 | MS.gene70564:intron |
| CCAGCCAAGCATCTAAGGTG+AGG | 0.642034 | 3.1:-64673094 | MS.gene70564:CDS |
| CAATTGCTTAAAGCCACAGG+TGG | 0.642351 | 3.1:-64673137 | MS.gene70564:CDS |
| CATACACATGCTGGCCCTGG+CGG | 0.642521 | 3.1:-64673912 | MS.gene70564:CDS |
| GAAGAAAATGTAGCAATCAG+CGG | 0.646618 | 3.1:-64673939 | MS.gene70564:CDS |
| AAATTTGTGGACAGTGCAAG+TGG | 0.650289 | 3.1:-64673439 | MS.gene70564:CDS |
| TTCTTGAGAGACTTGAAACA+AGG | 0.650612 | 3.1:-64674361 | MS.gene70564:intron |
| AATGGCGGGTAGAAGGCTAA+GGG | 0.655945 | 3.1:-64671959 | MS.gene70564:CDS |
| ACTCCTGACGGAATTAAACT+CGG | 0.660380 | 3.1:-64671511 | MS.gene70564:CDS |
| TCATCAGCAAAATGGCACAA+AGG | 0.665732 | 3.1:-64674655 | None:intergenic |
| AGAATTGGACAACAAGAAGG+TGG | 0.667310 | 3.1:-64672694 | MS.gene70564:CDS |
| GGCGGGTAGAAGGCTAAGGG+AGG | 0.668050 | 3.1:-64671956 | MS.gene70564:CDS |
| GTTGGAAGTTATGACATGAC+TGG | 0.673775 | 3.1:-64674557 | MS.gene70564:CDS |
| ATAATTCTTTCTGTACCAGG+AGG | 0.673779 | 3.1:-64672112 | MS.gene70564:intron |
| ATATCTGCTAAATCCTGCAG+AGG | 0.683835 | 3.1:-64673509 | MS.gene70564:CDS |
| AATAACAACAAGCTTATCAG+CGG | 0.695337 | 3.1:-64673364 | MS.gene70564:CDS |
| AGTTGGATGCAAAGTACACA+TGG | 0.717459 | 3.1:-64674596 | MS.gene70564:CDS |
| CATACTGCAGATAACCGCCA+GGG | 0.724259 | 3.1:+64673898 | None:intergenic |
| CTTATCAGCGGAGATAACAA+GGG | 0.724369 | 3.1:-64673352 | MS.gene70564:intron |
| ATGTATGCCGATAATGTGTG+AGG | 0.755357 | 3.1:+64671658 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACATTATTTATTTAACAA+TGG | + | chr3.1:64673766-64673785 | None:intergenic | 10.0% |
| !! | ATATTAAGTACAAAGATTAT+AGG | - | chr3.1:64672966-64672985 | MS.gene70564:CDS | 15.0% |
| !! | ATTACTTATTAGCAATAAAA+AGG | + | chr3.1:64674079-64674098 | None:intergenic | 15.0% |
| !! | TATATTATATGAACAGATAT+AGG | - | chr3.1:64672612-64672631 | MS.gene70564:CDS | 15.0% |
| !! | TGATAATTTATTTCAACAAT+TGG | + | chr3.1:64673286-64673305 | None:intergenic | 15.0% |
| !! | TTGTACTTAATATTTCATTT+GGG | + | chr3.1:64672959-64672978 | None:intergenic | 15.0% |
| !! | TTTGTACTTAATATTTCATT+TGG | + | chr3.1:64672960-64672979 | None:intergenic | 15.0% |
| !! | ATAAGTAATATAAAATGTGC+AGG | - | chr3.1:64674090-64674109 | MS.gene70564:intron | 20.0% |
| !!! | AAAAAATAGCATGACTTTTT+TGG | - | chr3.1:64671790-64671809 | MS.gene70564:intron | 20.0% |
| !!! | ACGTATGATTTTTAAAAACA+TGG | - | chr3.1:64671680-64671699 | MS.gene70564:CDS | 20.0% |
| !!! | ATGATTTTTAAAAACATGGA+TGG | - | chr3.1:64671684-64671703 | MS.gene70564:intron | 20.0% |
| !!! | CACTATTTCTATTTCAAATA+TGG | - | chr3.1:64673723-64673742 | MS.gene70564:intron | 20.0% |
| !!! | TTTTCTAATTCTCTATCATA+TGG | - | chr3.1:64672925-64672944 | MS.gene70564:intron | 20.0% |
| ! | AAACCCAAAACAGTAATAAT+TGG | + | chr3.1:64671162-64671181 | None:intergenic | 25.0% |
| ! | AAACCTTCAAAAAATCAATC+AGG | + | chr3.1:64671817-64671836 | None:intergenic | 25.0% |
| ! | AATTTCAGAGTTTACAACAA+TGG | - | chr3.1:64673814-64673833 | MS.gene70564:CDS | 25.0% |
| ! | ACATTAATATCCAATAGCAA+TGG | - | chr3.1:64673869-64673888 | MS.gene70564:CDS | 25.0% |
| ! | ATGAAGTCTATAAACTCTAT+TGG | + | chr3.1:64671498-64671517 | None:intergenic | 25.0% |
| ! | ATTTGTTTCAACTAGTGTTA+TGG | - | chr3.1:64672568-64672587 | MS.gene70564:intron | 25.0% |
| ! | CTGCAATATTTACTTATACA+AGG | - | chr3.1:64672092-64672111 | MS.gene70564:intron | 25.0% |
| ! | GTATAAGTAAATATTGCAGT+AGG | + | chr3.1:64672091-64672110 | None:intergenic | 25.0% |
| ! | TACAAACATTGAAGTAGAAT+TGG | - | chr3.1:64673082-64673101 | MS.gene70564:CDS | 25.0% |
| ! | TGAGTTTAATTAGATTCCTT+GGG | + | chr3.1:64671751-64671770 | None:intergenic | 25.0% |
| ! | TTCACCTGTGTTTATAATAA+TGG | + | chr3.1:64672027-64672046 | None:intergenic | 25.0% |
| ! | TTGAGTTTAATTAGATTCCT+TGG | + | chr3.1:64671752-64671771 | None:intergenic | 25.0% |
| ! | TTTGTTTCAACTAGTGTTAT+GGG | - | chr3.1:64672569-64672588 | MS.gene70564:intron | 25.0% |
| !! | ATTATCAATAACGAAAGCAT+TGG | - | chr3.1:64673299-64673318 | MS.gene70564:intron | 25.0% |
| !! | CAAAATATTTGTTTCTTTCC+TGG | - | chr3.1:64673604-64673623 | MS.gene70564:intron | 25.0% |
| !! | TTTTGTACAGATAAAAGATC+TGG | + | chr3.1:64674229-64674248 | None:intergenic | 25.0% |
| !!! | AATTATTACTGTTTTGGGTT+TGG | - | chr3.1:64671161-64671180 | MS.gene70564:CDS | 25.0% |
| !!! | ATTTAAGCTTGTTTTTCAAG+TGG | - | chr3.1:64674476-64674495 | MS.gene70564:CDS | 25.0% |
| !!! | TGATTGATTTTTTGAAGGTT+TGG | - | chr3.1:64671816-64671835 | MS.gene70564:intron | 25.0% |
| !!! | TGTAAACTCTGAAATTCAAA+AGG | + | chr3.1:64673810-64673829 | None:intergenic | 25.0% |
| AAAGAAGATATAGCATTTCC+AGG | - | chr3.1:64674310-64674329 | MS.gene70564:intron | 30.0% | |
| AAATATTGCAGTAGGATAAG+AGG | + | chr3.1:64672083-64672102 | None:intergenic | 30.0% | |
| AAATCATCATCATCATGAAC+CGG | + | chr3.1:64674460-64674479 | None:intergenic | 30.0% | |
| AACAAGAAAGAGTTCTCAAT+TGG | + | chr3.1:64672196-64672215 | None:intergenic | 30.0% | |
| AATAACAACAAGCTTATCAG+CGG | - | chr3.1:64672427-64672446 | MS.gene70564:intron | 30.0% | |
| ACAAAATGCTCCAACAAATA+AGG | + | chr3.1:64672736-64672755 | None:intergenic | 30.0% | |
| ACTGTCCACAAATTTCAAAA+GGG | + | chr3.1:64672347-64672366 | None:intergenic | 30.0% | |
| AGATATGATCTTCTAACAGA+AGG | - | chr3.1:64674391-64674410 | MS.gene70564:CDS | 30.0% | |
| AGATTGACAAAAACAAACCT+AGG | + | chr3.1:64671372-64671391 | None:intergenic | 30.0% | |
| ATTGAATTCTCCATTGCTAT+TGG | + | chr3.1:64673882-64673901 | None:intergenic | 30.0% | |
| GGTTCCATTATTATAAACAC+AGG | - | chr3.1:64672020-64672039 | MS.gene70564:intron | 30.0% | |
| GTACAAAGATTATAGGAGAA+AGG | - | chr3.1:64672973-64672992 | MS.gene70564:CDS | 30.0% | |
| GTCAAATATGGATTTCCAAT+AGG | + | chr3.1:64674040-64674059 | None:intergenic | 30.0% | |
| TCTCTTACATTCTTCCAAAA+TGG | + | chr3.1:64673405-64673424 | None:intergenic | 30.0% | |
| TCTGTTAGAAGATCATATCT+TGG | + | chr3.1:64674391-64674410 | None:intergenic | 30.0% | |
| TGAAGGAAGCAAGTATAAAT+AGG | - | chr3.1:64672248-64672267 | MS.gene70564:intron | 30.0% | |
| TTGAAGAATATCATCAGCAA+CGG | - | chr3.1:64673963-64673982 | MS.gene70564:intron | 30.0% | |
| ! | AAGGCCAATTATTACTGTTT+TGG | - | chr3.1:64671155-64671174 | MS.gene70564:CDS | 30.0% |
| ! | AGGCCAATTATTACTGTTTT+GGG | - | chr3.1:64671156-64671175 | MS.gene70564:CDS | 30.0% |
| ! | GCATTTTGTCAATCAAATGT+TGG | - | chr3.1:64672747-64672766 | MS.gene70564:CDS | 30.0% |
| ! | GTGTTTATAATAATGGAACC+AGG | + | chr3.1:64672020-64672039 | None:intergenic | 30.0% |
| ! | TCTACGTTTCAATTTAGTTC+TGG | + | chr3.1:64671595-64671614 | None:intergenic | 30.0% |
| !! | AATGATGGATCCTTATTTGT+TGG | - | chr3.1:64672723-64672742 | MS.gene70564:CDS | 30.0% |
| !! | ACTTTAGAGTACAAACCTAT+TGG | - | chr3.1:64674022-64674041 | MS.gene70564:intron | 30.0% |
| !! | CTTGTTTTCATGTTATTGCT+TGG | - | chr3.1:64672210-64672229 | MS.gene70564:intron | 30.0% |
| !! | GTTTGTACTCTAAAGTAACT+CGG | + | chr3.1:64674018-64674037 | None:intergenic | 30.0% |
| !! | TGTTTTCAGAAGTGTACTTT+TGG | + | chr3.1:64671661-64671680 | None:intergenic | 30.0% |
| !!! | CTGGTGAAGTTTTAATTTAG+AGG | + | chr3.1:64671576-64671595 | None:intergenic | 30.0% |
| !!! | TTTTGGGTTTGGTATGTTTT+TGG | - | chr3.1:64671172-64671191 | MS.gene70564:CDS | 30.0% |
| AAAGTAAAGGATCATTCAGC+TGG | - | chr3.1:64672377-64672396 | MS.gene70564:CDS | 35.0% | |
| AAATGTTCGATCCTTATCCT+TGG | - | chr3.1:64673496-64673515 | MS.gene70564:CDS | 35.0% | |
| AAGAAAATGTAGCAATCAGC+GGG | - | chr3.1:64671853-64671872 | MS.gene70564:CDS | 35.0% | |
| AAGCATGTGTTGCAACTAAT+TGG | + | chr3.1:64672904-64672923 | None:intergenic | 35.0% | |
| AATGTTCGATCCTTATCCTT+GGG | - | chr3.1:64673497-64673516 | MS.gene70564:CDS | 35.0% | |
| AATTCTCTATCATATGGAGC+AGG | - | chr3.1:64672931-64672950 | MS.gene70564:CDS | 35.0% | |
| ACACATGGTGAGTACTTAAT+TGG | - | chr3.1:64671210-64671229 | MS.gene70564:CDS | 35.0% | |
| ACCGGTAAAGTAATTGATAG+GGG | + | chr3.1:64674620-64674639 | None:intergenic | 35.0% | |
| AGAACCAAGTCAATATCAAG+TGG | - | chr3.1:64673434-64673453 | MS.gene70564:CDS | 35.0% | |
| AGTAGAATTGGACAACAAGA+AGG | - | chr3.1:64673094-64673113 | MS.gene70564:CDS | 35.0% | |
| ATAAACCAAGTGCTACATTC+TGG | - | chr3.1:64674356-64674375 | MS.gene70564:intron | 35.0% | |
| ATAATTCTTTCTGTACCAGG+AGG | - | chr3.1:64673679-64673698 | MS.gene70564:intron | 35.0% | |
| ATACCAACAGATGCAATTTC+TGG | - | chr3.1:64674547-64674566 | MS.gene70564:CDS | 35.0% | |
| ATCTGAATTGGAAGAATTGC+TGG | + | chr3.1:64673640-64673659 | None:intergenic | 35.0% | |
| ATTGTTGCTGAGAATCTTCA+AGG | - | chr3.1:64671345-64671364 | MS.gene70564:CDS | 35.0% | |
| CAAAACGCTCCTAATACATT+TGG | + | chr3.1:64672783-64672802 | None:intergenic | 35.0% | |
| CACCGGTAAAGTAATTGATA+GGG | + | chr3.1:64674621-64674640 | None:intergenic | 35.0% | |
| CACTGTCCACAAATTTCAAA+AGG | + | chr3.1:64672348-64672367 | None:intergenic | 35.0% | |
| CCAATTGCTTCTGTCAAATA+TGG | + | chr3.1:64674052-64674071 | None:intergenic | 35.0% | |
| CCATATTTGACAGAAGCAAT+TGG | - | chr3.1:64674049-64674068 | MS.gene70564:intron | 35.0% | |
| CTGATAATTCTTTCTGTACC+AGG | - | chr3.1:64673676-64673695 | MS.gene70564:intron | 35.0% | |
| GAAGAAAATGTAGCAATCAG+CGG | - | chr3.1:64671852-64671871 | MS.gene70564:CDS | 35.0% | |
| GAAGAATGGTTGAAATCACA+AGG | + | chr3.1:64672822-64672841 | None:intergenic | 35.0% | |
| GATGTGTCACCAAATGTATT+AGG | - | chr3.1:64672771-64672790 | MS.gene70564:CDS | 35.0% | |
| GCTAAAGGCGATAAAATCAA+TGG | - | chr3.1:64674187-64674206 | MS.gene70564:intron | 35.0% | |
| GCTTCATTGTGTGTAACTTA+AGG | - | chr3.1:64671725-64671744 | MS.gene70564:intron | 35.0% | |
| GGCGATAAAATCAATGGAAA+TGG | - | chr3.1:64674193-64674212 | MS.gene70564:intron | 35.0% | |
| GTACAGATAAAAGATCTGGT+GGG | + | chr3.1:64674225-64674244 | None:intergenic | 35.0% | |
| GTAGACAATACTTCCTTTCA+TGG | - | chr3.1:64674502-64674521 | MS.gene70564:CDS | 35.0% | |
| GTGTACAGACTAAAACACTT+TGG | - | chr3.1:64674571-64674590 | MS.gene70564:CDS | 35.0% | |
| TACAGATAAAAGATCTGGTG+GGG | + | chr3.1:64674224-64674243 | None:intergenic | 35.0% | |
| TCCCCTATCAATTACTTTAC+CGG | - | chr3.1:64674616-64674635 | MS.gene70564:CDS | 35.0% | |
| TGTACAGATAAAAGATCTGG+TGG | + | chr3.1:64674226-64674245 | None:intergenic | 35.0% | |
| TGTTGAAAACCAAAAACACC+TGG | + | chr3.1:64673179-64673198 | None:intergenic | 35.0% | |
| TGTTGGTATTTCCCATTCTA+TGG | + | chr3.1:64674536-64674555 | None:intergenic | 35.0% | |
| TTCAACCATTCTTCATGCAA+TGG | - | chr3.1:64672828-64672847 | MS.gene70564:CDS | 35.0% | |
| TTCAGAGTTTACAACAATGG+CGG | - | chr3.1:64673817-64673836 | MS.gene70564:CDS | 35.0% | |
| TTCTTGAGAGACTTGAAACA+AGG | - | chr3.1:64671430-64671449 | MS.gene70564:CDS | 35.0% | |
| TTGCAACTAATTGGTTAGAG+AGG | + | chr3.1:64672895-64672914 | None:intergenic | 35.0% | |
| TTGTTCTACTGCATTAGCAA+TGG | + | chr3.1:64671967-64671986 | None:intergenic | 35.0% | |
| TTGTTTCACAAAACCAAGAG+AGG | + | chr3.1:64671934-64671953 | None:intergenic | 35.0% | |
| TTTGTAAAATAACCGCTTCC+TGG | + | chr3.1:64674331-64674350 | None:intergenic | 35.0% | |
| ! | ACACAGCTGGTATTCATTTT+AGG | - | chr3.1:64671304-64671323 | MS.gene70564:CDS | 35.0% |
| ! | CACACAATGAAGCATTAATG+AGG | + | chr3.1:64671718-64671737 | None:intergenic | 35.0% |
| ! | GTTTTTGTCAATCTAGATGC+TGG | - | chr3.1:64671378-64671397 | MS.gene70564:CDS | 35.0% |
| ! | TCTAAGGTGAGGAAAAATGA+TGG | - | chr3.1:64672708-64672727 | MS.gene70564:CDS | 35.0% |
| ! | TGCTTAACAAAACTGGCTTA+GGG | + | chr3.1:64673470-64673489 | None:intergenic | 35.0% |
| !! | AAGCTTGTTGTTATTGCTCA+TGG | + | chr3.1:64672422-64672441 | None:intergenic | 35.0% |
| !! | AGGAAGCGGTTATTTTACAA+AGG | - | chr3.1:64674330-64674349 | MS.gene70564:intron | 35.0% |
| !! | CCAATTCAGATTCTGAGATT+GGG | - | chr3.1:64673649-64673668 | MS.gene70564:intron | 35.0% |
| !! | GGAAGCGGTTATTTTACAAA+GGG | - | chr3.1:64674331-64674350 | MS.gene70564:intron | 35.0% |
| !! | GTGCTAGTTTGTTGAATTCT+TGG | + | chr3.1:64674159-64674178 | None:intergenic | 35.0% |
| !! | TCCAATTCAGATTCTGAGAT+TGG | - | chr3.1:64673648-64673667 | MS.gene70564:intron | 35.0% |
| !!! | GATGACCCTTTTGAAATTTG+TGG | - | chr3.1:64672339-64672358 | MS.gene70564:CDS | 35.0% |
| !!! | GGTCCTGATTGATTTTTTGA+AGG | - | chr3.1:64671811-64671830 | MS.gene70564:intron | 35.0% |
| !!! | GGTGTTTTTGGTTTTCAACA+AGG | - | chr3.1:64673179-64673198 | MS.gene70564:intron | 35.0% |
| !!! | GTTTGGTATGTTTTTGGAGT+TGG | - | chr3.1:64671178-64671197 | MS.gene70564:CDS | 35.0% |
| !!! | TTTTATCATGCCTAGTTCTG+TGG | + | chr3.1:64672533-64672552 | None:intergenic | 35.0% |
| AAAATCCAGCCAAGCATCTA+AGG | - | chr3.1:64672692-64672711 | MS.gene70564:CDS | 40.0% | |
| AAATTTGTGGACAGTGCAAG+TGG | - | chr3.1:64672352-64672371 | MS.gene70564:CDS | 40.0% | |
| AACAGCAATTCCACAGAACT+AGG | - | chr3.1:64672520-64672539 | MS.gene70564:intron | 40.0% | |
| AAGCAAGAATACAAACCTCC+TGG | + | chr3.1:64673697-64673716 | None:intergenic | 40.0% | |
| AATGAATACCAGCTGTGTTC+TGG | + | chr3.1:64671302-64671321 | None:intergenic | 40.0% | |
| ACTATAGGGACACTTACTTC+TGG | + | chr3.1:64673209-64673228 | None:intergenic | 40.0% | |
| ACTCCAGAAATTGCATCTGT+TGG | + | chr3.1:64674553-64674572 | None:intergenic | 40.0% | |
| ACTCCTGACGGAATTAAACT+CGG | - | chr3.1:64674280-64674299 | MS.gene70564:intron | 40.0% | |
| AGAATTGGACAACAAGAAGG+TGG | - | chr3.1:64673097-64673116 | MS.gene70564:CDS | 40.0% | |
| AGCTTCTTACTTGATCCCTT+TGG | - | chr3.1:64674250-64674269 | MS.gene70564:intron | 40.0% | |
| AGTGCAAGTGGCAAAAGTAA+AGG | - | chr3.1:64672364-64672383 | MS.gene70564:CDS | 40.0% | |
| AGTTGGATGCAAAGTACACA+TGG | - | chr3.1:64671195-64671214 | MS.gene70564:CDS | 40.0% | |
| ATATCATCAGCAACGGTATG+AGG | - | chr3.1:64673970-64673989 | MS.gene70564:intron | 40.0% | |
| ATATCTGCTAAATCCTGCAG+AGG | - | chr3.1:64672282-64672301 | MS.gene70564:intron | 40.0% | |
| ATCTGTGTGTCAACATTGGA+AGG | + | chr3.1:64672322-64672341 | None:intergenic | 40.0% | |
| ATGACCTTCTTTGTGTTGGA+AGG | - | chr3.1:64672853-64672872 | MS.gene70564:intron | 40.0% | |
| ATGGTTTCGCTACCATAGAA+TGG | - | chr3.1:64674521-64674540 | MS.gene70564:CDS | 40.0% | |
| ATGTATGCCGATAATGTGTG+AGG | + | chr3.1:64674136-64674155 | None:intergenic | 40.0% | |
| CAACAAACTAGCACAAGCAA+TGG | - | chr3.1:64674165-64674184 | MS.gene70564:intron | 40.0% | |
| CATTGCCATTGCATGAAGAA+TGG | + | chr3.1:64672836-64672855 | None:intergenic | 40.0% | |
| CCCAATCTCAGAATCTGAAT+TGG | + | chr3.1:64673652-64673671 | None:intergenic | 40.0% | |
| CTGCTTCAGAGGAACTTAAA+GGG | - | chr3.1:64673027-64673046 | MS.gene70564:CDS | 40.0% | |
| CTTATCAGCGGAGATAACAA+GGG | - | chr3.1:64672439-64672458 | MS.gene70564:intron | 40.0% | |
| GATATAGCATTTCCAGGAAG+CGG | - | chr3.1:64674316-64674335 | MS.gene70564:intron | 40.0% | |
| GGATTTAGCAGATATGCACT+TGG | + | chr3.1:64672277-64672296 | None:intergenic | 40.0% | |
| GGTGAGTACTTAATTGGAGT+TGG | - | chr3.1:64671216-64671235 | MS.gene70564:CDS | 40.0% | |
| GTAATTGATAGGGGAGACTA+TGG | + | chr3.1:64674611-64674630 | None:intergenic | 40.0% | |
| GTACATATGCTTCAGTGGAA+AGG | - | chr3.1:64674413-64674432 | MS.gene70564:CDS | 40.0% | |
| GTATGGTCCTCACACATTAT+CGG | - | chr3.1:64674126-64674145 | MS.gene70564:intron | 40.0% | |
| GTGTGCAAAGAGTGACTATA+GGG | + | chr3.1:64673223-64673242 | None:intergenic | 40.0% | |
| GTTGGAAGTTATGACATGAC+TGG | - | chr3.1:64671234-64671253 | MS.gene70564:CDS | 40.0% | |
| GTTTACTCTGTAACCTCTCT+TGG | - | chr3.1:64671918-64671937 | MS.gene70564:CDS | 40.0% | |
| TCAGAGTTTACAACAATGGC+GGG | - | chr3.1:64673818-64673837 | MS.gene70564:CDS | 40.0% | |
| TCTCCACTGCTTAACAAAAC+TGG | + | chr3.1:64673477-64673496 | None:intergenic | 40.0% | |
| TCTGCTTCAGAGGAACTTAA+AGG | - | chr3.1:64673026-64673045 | MS.gene70564:CDS | 40.0% | |
| TGACCTTCTTTGTGTTGGAA+GGG | - | chr3.1:64672854-64672873 | MS.gene70564:intron | 40.0% | |
| TGCATTAGCAATGGCATCAA+AGG | + | chr3.1:64671958-64671977 | None:intergenic | 40.0% | |
| TGGTTTCGCTACCATAGAAT+GGG | - | chr3.1:64674522-64674541 | MS.gene70564:CDS | 40.0% | |
| TGTCAATCTAGATGCTGGAA+TGG | - | chr3.1:64671383-64671402 | MS.gene70564:CDS | 40.0% | |
| TGTGTGCAAAGAGTGACTAT+AGG | + | chr3.1:64673224-64673243 | None:intergenic | 40.0% | |
| ! | AGAAGGTACATATGCTTCAG+TGG | - | chr3.1:64674408-64674427 | MS.gene70564:CDS | 40.0% |
| ! | AGTTCTGTGGAATTGCTGTT+TGG | + | chr3.1:64672520-64672539 | None:intergenic | 40.0% |
| ! | ATTGCTGGCTATACAAATCC+AGG | + | chr3.1:64673625-64673644 | None:intergenic | 40.0% |
| ! | CAGTCCACTTGATATTGACT+TGG | + | chr3.1:64673441-64673460 | None:intergenic | 40.0% |
| ! | CTGCAAGACTCTTTGAAGAT+TGG | - | chr3.1:64672467-64672486 | MS.gene70564:intron | 40.0% |
| ! | CTGCTTAACAAAACTGGCTT+AGG | + | chr3.1:64673471-64673490 | None:intergenic | 40.0% |
| ! | GCACCGGTAAAGTAATTGAT+AGG | + | chr3.1:64674622-64674641 | None:intergenic | 40.0% |
| ! | TAATAATGGAACCAGGCTTG+AGG | + | chr3.1:64672013-64672032 | None:intergenic | 40.0% |
| ! | TAGATGCTTGGCTGGATTTT+TGG | + | chr3.1:64672692-64672711 | None:intergenic | 40.0% |
| ! | TATGGTAGCGAAACCATGAA+AGG | + | chr3.1:64674518-64674537 | None:intergenic | 40.0% |
| ! | TTTTCCTCACCTTAGATGCT+TGG | + | chr3.1:64672704-64672723 | None:intergenic | 40.0% |
| !! | ACAAAACTGGCTTAGGGTTT+TGG | + | chr3.1:64673464-64673483 | None:intergenic | 40.0% |
| !! | AGAAGTGCTGTGGAACTATT+TGG | - | chr3.1:64673002-64673021 | MS.gene70564:CDS | 40.0% |
| !! | CTGTGCAGATTAGTCCATTT+TGG | - | chr3.1:64673388-64673407 | MS.gene70564:CDS | 40.0% |
| !! | CTTGTTGTTATTGCTCATGG+AGG | + | chr3.1:64672419-64672438 | None:intergenic | 40.0% |
| !! | GAAGTGCTGTGGAACTATTT+GGG | - | chr3.1:64673003-64673022 | MS.gene70564:CDS | 40.0% |
| !! | GTTCTGTGGAATTGCTGTTT+GGG | + | chr3.1:64672519-64672538 | None:intergenic | 40.0% |
| !! | TGTTATTGCTTGGTGCCTTT+AGG | - | chr3.1:64672220-64672239 | MS.gene70564:intron | 40.0% |
| !! | TTCTGTGGAATTGCTGTTTG+GGG | + | chr3.1:64672518-64672537 | None:intergenic | 40.0% |
| !!! | AAGCCAGTTTTGTTAAGCAG+TGG | - | chr3.1:64673471-64673490 | MS.gene70564:CDS | 40.0% |
| AAAGGCTTCAAGGGGAAAGA+TGG | - | chr3.1:64674431-64674450 | MS.gene70564:CDS | 45.0% | |
| AACATTGACCAGAACACAGC+TGG | - | chr3.1:64671291-64671310 | MS.gene70564:CDS | 45.0% | |
| ACTATTTGGGTCTGCTTCAG+AGG | - | chr3.1:64673016-64673035 | MS.gene70564:CDS | 45.0% | |
| ACTCGGTATCCTCTTCTGTT+TGG | + | chr3.1:64674001-64674020 | None:intergenic | 45.0% | |
| AGCTGTGTTCTGGTCAATGT+TGG | + | chr3.1:64671292-64671311 | None:intergenic | 45.0% | |
| ATCAGCAACGGTATGAGGTA+AGG | - | chr3.1:64673975-64673994 | MS.gene70564:intron | 45.0% | |
| ATCATGTTCACATCAGCAGC+AGG | + | chr3.1:64671261-64671280 | None:intergenic | 45.0% | |
| CAATTGCTTAAAGCCACAGG+TGG | - | chr3.1:64672654-64672673 | MS.gene70564:CDS | 45.0% | |
| CTAGCACAAGCAATGGCTAA+AGG | - | chr3.1:64674172-64674191 | MS.gene70564:intron | 45.0% | |
| CTGAGAATCTTCAAGGTCCT+AGG | - | chr3.1:64671352-64671371 | MS.gene70564:CDS | 45.0% | |
| CTTCAGTGGAAAGGCTTCAA+GGG | - | chr3.1:64674422-64674441 | MS.gene70564:CDS | 45.0% | |
| GAAACGCATGTCGTTATTGC+AGG | - | chr3.1:64673905-64673924 | MS.gene70564:CDS | 45.0% | |
| GACCTTCTTTGTGTTGGAAG+GGG | - | chr3.1:64672855-64672874 | MS.gene70564:intron | 45.0% | |
| GCTGCTGATGTGAACATGAT+GGG | - | chr3.1:64671261-64671280 | MS.gene70564:CDS | 45.0% | |
| GCTTATCAGCGGAGATAACA+AGG | - | chr3.1:64672438-64672457 | MS.gene70564:intron | 45.0% | |
| GCTTCCTTCACATCTCCTAA+AGG | + | chr3.1:64672238-64672257 | None:intergenic | 45.0% | |
| GGCAATGACCTTCTTTGTGT+TGG | - | chr3.1:64672849-64672868 | MS.gene70564:intron | 45.0% | |
| GGTCATCTGTGTGTCAACAT+TGG | + | chr3.1:64672326-64672345 | None:intergenic | 45.0% | |
| TCACCGAGTTTAATTCCGTC+AGG | + | chr3.1:64674286-64674305 | None:intergenic | 45.0% | |
| TCAGGAGTTGTGTCTCCAAA+GGG | + | chr3.1:64674268-64674287 | None:intergenic | 45.0% | |
| TGCAAATGCACTTGAAGCAC+CGG | + | chr3.1:64674638-64674657 | None:intergenic | 45.0% | |
| TGCTGCTGATGTGAACATGA+TGG | - | chr3.1:64671260-64671279 | MS.gene70564:CDS | 45.0% | |
| TGTGTGTAACTTAAGGCCCA+AGG | - | chr3.1:64671732-64671751 | MS.gene70564:intron | 45.0% | |
| TTCAGTGGAAAGGCTTCAAG+GGG | - | chr3.1:64674423-64674442 | MS.gene70564:CDS | 45.0% | |
| TTTGGAGACACAACTCCTGA+CGG | - | chr3.1:64674268-64674287 | MS.gene70564:intron | 45.0% | |
| ! | TCAAGGGGAAAGATGGATTC+CGG | - | chr3.1:64674438-64674457 | MS.gene70564:CDS | 45.0% |
| !! | AAGGCAATTCAGAAGTGCTG+TGG | - | chr3.1:64672992-64673011 | MS.gene70564:CDS | 45.0% |
| !! | TTACAACAATGGCGGGTAGA+AGG | - | chr3.1:64673825-64673844 | MS.gene70564:CDS | 45.0% |
| AAAACATGCCCTGCAGCTCT+CGG | - | chr3.1:64673122-64673141 | MS.gene70564:CDS | 50.0% | |
| AACTGAAGACTTACCGCCCA+AGG | + | chr3.1:64673516-64673535 | None:intergenic | 50.0% | |
| AAGGCTAAGGGAGGCAGTAA+AGG | - | chr3.1:64673844-64673863 | MS.gene70564:CDS | 50.0% | |
| ACATACTGCAGATAACCGCC+AGG | + | chr3.1:64671897-64671916 | None:intergenic | 50.0% | |
| AGACTTACCGCCCAAGGATA+AGG | + | chr3.1:64673510-64673529 | None:intergenic | 50.0% | |
| AGCGGGATTCATACACATGC+TGG | - | chr3.1:64671870-64671889 | MS.gene70564:CDS | 50.0% | |
| ATCCTGCAGAGGAGAGATCA+AGG | - | chr3.1:64672293-64672312 | MS.gene70564:CDS | 50.0% | |
| ATTCATACACATGCTGGCCC+TGG | - | chr3.1:64671876-64671895 | MS.gene70564:CDS | 50.0% | |
| CAGGCTGCATCTACTCTGTA+TGG | - | chr3.1:64674109-64674128 | MS.gene70564:intron | 50.0% | |
| CATACTGCAGATAACCGCCA+GGG | + | chr3.1:64671896-64671915 | None:intergenic | 50.0% | |
| GAGGTAAGGCCAAACAGAAG+AGG | - | chr3.1:64673989-64674008 | MS.gene70564:intron | 50.0% | |
| GCACTCCAGAATGTAGCACT+TGG | + | chr3.1:64674364-64674383 | None:intergenic | 50.0% | |
| GCGCAATTGCTTAAAGCCAC+AGG | - | chr3.1:64672651-64672670 | MS.gene70564:CDS | 50.0% | |
| GCTCACAATAACCTCAAGCC+TGG | - | chr3.1:64671999-64672018 | MS.gene70564:intron | 50.0% | |
| GCTTAAAGCCACAGGTGGAA+AGG | - | chr3.1:64672659-64672678 | MS.gene70564:CDS | 50.0% | |
| GCTTCAGTGGAAAGGCTTCA+AGG | - | chr3.1:64674421-64674440 | MS.gene70564:CDS | 50.0% | |
| GTCAGGAGTTGTGTCTCCAA+AGG | + | chr3.1:64674269-64674288 | None:intergenic | 50.0% | |
| GTCCCCTTCCAACACAAAGA+AGG | + | chr3.1:64672860-64672879 | None:intergenic | 50.0% | |
| GTTAGAGAGGCTCATTACCC+TGG | + | chr3.1:64672882-64672901 | None:intergenic | 50.0% | |
| GTTCGATCCTTATCCTTGGG+CGG | - | chr3.1:64673500-64673519 | MS.gene70564:CDS | 50.0% | |
| GTTGCAATCCTTTCCACCTG+TGG | + | chr3.1:64672670-64672689 | None:intergenic | 50.0% | |
| TACCTTGATCTCTCCTCTGC+AGG | + | chr3.1:64672298-64672317 | None:intergenic | 50.0% | |
| TGGCGGTTATCTGCAGTATG+TGG | - | chr3.1:64671896-64671915 | MS.gene70564:CDS | 50.0% | |
| TTTGCAGCAGGCACTACAGA+CGG | - | chr3.1:64673152-64673171 | MS.gene70564:CDS | 50.0% | |
| TTTGTGTTGGAAGGGGACCA+GGG | - | chr3.1:64672862-64672881 | MS.gene70564:intron | 50.0% | |
| ! | ACAGACGGACCAGGTGTTTT+TGG | - | chr3.1:64673167-64673186 | MS.gene70564:intron | 50.0% |
| ! | GGTGCCTTTAGGAGATGTGA+AGG | - | chr3.1:64672231-64672250 | MS.gene70564:intron | 50.0% |
| !! | AATGGCGGGTAGAAGGCTAA+GGG | - | chr3.1:64673832-64673851 | MS.gene70564:CDS | 50.0% |
| !! | TTCAGCTGGTTTGCGACACA+CGG | - | chr3.1:64672391-64672410 | MS.gene70564:CDS | 50.0% |
| CCTCACCTTAGATGCTTGGC+TGG | + | chr3.1:64672700-64672719 | None:intergenic | 55.0% | |
| CTTTGTGTTGGAAGGGGACC+AGG | - | chr3.1:64672861-64672880 | MS.gene70564:intron | 55.0% | |
| GTAGTGCCTGCTGCAAAACC+AGG | + | chr3.1:64673149-64673168 | None:intergenic | 55.0% | |
| ! | CCAGCCAAGCATCTAAGGTG+AGG | - | chr3.1:64672697-64672716 | MS.gene70564:CDS | 55.0% |
| !! | CAATGGCGGGTAGAAGGCTA+AGG | - | chr3.1:64673831-64673850 | MS.gene70564:CDS | 55.0% |
| AAACCAGGACCGAGAGCTGC+AGG | + | chr3.1:64673134-64673153 | None:intergenic | 60.0% | |
| AACCAGGACCGAGAGCTGCA+GGG | + | chr3.1:64673133-64673152 | None:intergenic | 60.0% | |
| CATACACATGCTGGCCCTGG+CGG | - | chr3.1:64671879-64671898 | MS.gene70564:CDS | 60.0% | |
| !! | GGAGCGTTTTGCGTCGACAG+TGG | - | chr3.1:64672792-64672811 | MS.gene70564:CDS | 60.0% |
| !!! | CTCGGTCCTGGTTTTGCAGC+AGG | - | chr3.1:64673140-64673159 | MS.gene70564:CDS | 60.0% |
| GCAGGCACTACAGACGGACC+AGG | - | chr3.1:64673158-64673177 | MS.gene70564:CDS | 65.0% | |
| GGCGGGTAGAAGGCTAAGGG+AGG | - | chr3.1:64673835-64673854 | MS.gene70564:CDS | 65.0% | |
| TGCCCTGCAGCTCTCGGTCC+TGG | - | chr3.1:64673128-64673147 | MS.gene70564:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 64671147 | 64674666 | 64671147 | ID=MS.gene70564 |
| chr3.1 | mRNA | 64671147 | 64674666 | 64671147 | ID=MS.gene70564.t1;Parent=MS.gene70564 |
| chr3.1 | exon | 64674362 | 64674666 | 64674362 | ID=MS.gene70564.t1.exon1;Parent=MS.gene70564.t1 |
| chr3.1 | CDS | 64674362 | 64674666 | 64674362 | ID=cds.MS.gene70564.t1;Parent=MS.gene70564.t1 |
| chr3.1 | exon | 64673772 | 64673980 | 64673772 | ID=MS.gene70564.t1.exon2;Parent=MS.gene70564.t1 |
| chr3.1 | CDS | 64673772 | 64673980 | 64673772 | ID=cds.MS.gene70564.t1;Parent=MS.gene70564.t1 |
| chr3.1 | exon | 64673353 | 64673571 | 64673353 | ID=MS.gene70564.t1.exon3;Parent=MS.gene70564.t1 |
| chr3.1 | CDS | 64673353 | 64673571 | 64673353 | ID=cds.MS.gene70564.t1;Parent=MS.gene70564.t1 |
| chr3.1 | exon | 64672930 | 64673185 | 64672930 | ID=MS.gene70564.t1.exon4;Parent=MS.gene70564.t1 |
| chr3.1 | CDS | 64672930 | 64673185 | 64672930 | ID=cds.MS.gene70564.t1;Parent=MS.gene70564.t1 |
| chr3.1 | exon | 64672602 | 64672860 | 64672602 | ID=MS.gene70564.t1.exon5;Parent=MS.gene70564.t1 |
| chr3.1 | CDS | 64672602 | 64672860 | 64672602 | ID=cds.MS.gene70564.t1;Parent=MS.gene70564.t1 |
| chr3.1 | exon | 64672292 | 64672417 | 64672292 | ID=MS.gene70564.t1.exon6;Parent=MS.gene70564.t1 |
| chr3.1 | CDS | 64672292 | 64672417 | 64672292 | ID=cds.MS.gene70564.t1;Parent=MS.gene70564.t1 |
| chr3.1 | exon | 64672113 | 64672176 | 64672113 | ID=MS.gene70564.t1.exon7;Parent=MS.gene70564.t1 |
| chr3.1 | CDS | 64672113 | 64672176 | 64672113 | ID=cds.MS.gene70564.t1;Parent=MS.gene70564.t1 |
| chr3.1 | exon | 64671822 | 64671991 | 64671822 | ID=MS.gene70564.t1.exon8;Parent=MS.gene70564.t1 |
| chr3.1 | CDS | 64671822 | 64671991 | 64671822 | ID=cds.MS.gene70564.t1;Parent=MS.gene70564.t1 |
| chr3.1 | exon | 64671147 | 64671701 | 64671147 | ID=MS.gene70564.t1.exon9;Parent=MS.gene70564.t1 |
| chr3.1 | CDS | 64671147 | 64671701 | 64671147 | ID=cds.MS.gene70564.t1;Parent=MS.gene70564.t1 |
| Gene Sequence |
| Protein sequence |
