AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058906


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058906.t1 MTR_8g089640 100.000 64 0 0 1 64 1 64 5.64e-42 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058906.t1 AT1G67785 77.419 62 13 1 1 62 1 61 2.22e-30 101

Find 0 sgRNAs with CRISPR-Local

Find 33 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTGTGTTATTTAAT+TGG - 57395:12961-12980 MS.gene058906:intron 10.0%
!! AGTGAAATTGAAATTGAATA+TGG + 57395:12747-12766 None:intergenic 20.0%
!! ATTAATTTCACTCATTTAAG+AGG - 57395:12784-12803 MS.gene058906:intron 20.0%
! AATATGGAAATTATCCGAAA+AGG + 57395:12731-12750 None:intergenic 25.0%
! TCGTTATAAGATGAAATCTA+GGG + 57395:12826-12845 None:intergenic 25.0%
! TTCGTTATAAGATGAAATCT+AGG + 57395:12827-12846 None:intergenic 25.0%
ATGAAGATTTCGAAGAAGTA+AGG + 57395:12679-12698 None:intergenic 30.0%
TGAAGATTTCGAAGAAGTAA+GGG + 57395:12678-12697 None:intergenic 30.0%
! TGTGGTGAATTTGTTCTTTA+AGG - 57395:12890-12909 MS.gene058906:intron 30.0%
!!! CAATTCTTGCTATTCCTTTT+CGG - 57395:12714-12733 MS.gene058906:intron 30.0%
ATATGAAGAATCCTTCTGAC+TGG + 57395:13066-13085 None:intergenic 35.0%
GAAGATTTCGAAGAAGTAAG+GGG + 57395:12677-12696 None:intergenic 35.0%
GGGTCAGAGAACAATTAATT+CGG - 57395:13033-13052 MS.gene058906:CDS 35.0%
GGTCAGAGAACAATTAATTC+GGG - 57395:13034-13053 MS.gene058906:CDS 35.0%
TACTTATGTGTGCAATGTTG+AGG - 57395:12851-12870 MS.gene058906:intron 35.0%
! GGTAACTGAGTTATTGACTG+TGG - 57395:12872-12891 MS.gene058906:intron 40.0%
!! AACGTACTTTGGAATGTCCT+TGG - 57395:12576-12595 MS.gene058906:CDS 40.0%
!! ATTCGTTTTCTGGCAATCCA+TGG - 57395:12603-12622 MS.gene058906:CDS 40.0%
GTAATGTGTTGCAGCAAGAG+AGG - 57395:12985-13004 MS.gene058906:CDS 45.0%
GTGAAGGTTGCAACGTACTT+TGG - 57395:12565-12584 MS.gene058906:CDS 45.0%
AGAAGGAAGCGGAGATCAGA+AGG - 57395:13012-13031 MS.gene058906:CDS 50.0%
AGAGAGGTTGGAGAAGGAAG+CGG - 57395:13001-13020 MS.gene058906:CDS 50.0%
CCAGAAAACGAATGCTGCCA+AGG + 57395:12596-12615 None:intergenic 50.0%
CCAGACATGGACTTTGTCCA+TGG + 57395:12623-12642 None:intergenic 50.0%
CCATGGACAAAGTCCATGTC+TGG - 57395:12620-12639 MS.gene058906:CDS 50.0%
CGCTCTTCATCAGGACGAAA+AGG - 57395:12645-12664 MS.gene058906:intron 50.0%
GAAGGAAGCGGAGATCAGAA+GGG - 57395:13013-13032 MS.gene058906:CDS 50.0%
GATGAAGAGCGATCCAGACA+TGG + 57395:12636-12655 None:intergenic 50.0%
TGTCTGGATCGCTCTTCATC+AGG - 57395:12636-12655 MS.gene058906:intron 50.0%
TGTGTTGCAGCAAGAGAGGT+TGG - 57395:12989-13008 MS.gene058906:CDS 50.0%
! CCTTGGCAGCATTCGTTTTC+TGG - 57395:12593-12612 MS.gene058906:CDS 50.0%
GCAGCAAGAGAGGTTGGAGA+AGG - 57395:12995-13014 MS.gene058906:CDS 55.0%
TCGGGAGCAAGCCAGTCAGA+AGG - 57395:13052-13071 MS.gene058906:CDS 60.0%


Chromosome Type Strat End Strand Name
57395 gene 12562 13088 12562 ID=MS.gene058906
57395 mRNA 12562 13088 12562 ID=MS.gene058906.t1;Parent=MS.gene058906
57395 exon 12984 13088 12984 ID=MS.gene058906.t1.exon1;Parent=MS.gene058906.t1
57395 CDS 12984 13088 12984 ID=cds.MS.gene058906.t1;Parent=MS.gene058906.t1
57395 exon 12562 12651 12562 ID=MS.gene058906.t1.exon2;Parent=MS.gene058906.t1
57395 CDS 12562 12651 12562 ID=cds.MS.gene058906.t1;Parent=MS.gene058906.t1
Gene Sequence

>MS.gene058906

ATGGTGAAGGTTGCAACGTACTTTGGAATGTCCTTGGCAGCATTCGTTTTCTGGCAATCCATGGACAAAGTCCATGTCTGGATCGCTCTTCATCAGGACGAAAAGGTTCTTACCCCTTACTTCTTCGAAATCTTCATCTTCTAATCAAAATTCAATTCTTGCTATTCCTTTTCGGATAATTTCCATATTCAATTTCAATTTCACTATATTTGTTTTGTATTGATTAATTTCACTCATTTAAGAGGAAACAAAAATTTAAAACCCTAGATTTCATCTTATAACGAATTGTTACTTATGTGTGCAATGTTGAGGTAACTGAGTTATTGACTGTGGTGAATTTGTTCTTTAAGGATTTTGATTCGTATATTCATTCTGCAGTATTATTATGAATATTTGATCAATATTTTGTGTTATTTAATTGGTGTAATGTGTTGCAGCAAGAGAGGTTGGAGAAGGAAGCGGAGATCAGAAGGGTCAGAGAACAATTAATTCGGGAGCAAGCCAGTCAGAAGGATTCTTCATATTGA

Protein sequence

>MS.gene058906.t1

MVKVATYFGMSLAAFVFWQSMDKVHVWIALHQDEKQERLEKEAEIRRVREQLIREQASQKDSSY