Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70839.t1 | XP_003617202.1 | 99.3 | 149 | 1 | 0 | 4 | 152 | 27 | 175 | 7.20E-83 | 316.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70839.t1 | G7KCU0 | 99.3 | 149 | 1 | 0 | 4 | 152 | 27 | 175 | 5.2e-83 | 316.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051852 | MS.gene70839 | 0.811503 | 6.78E-51 | -1.69E-46 |
| MS.gene060563 | MS.gene70839 | 0.808741 | 2.67E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70839.t1 | MTR_5g088990 | 98.667 | 150 | 2 | 0 | 4 | 153 | 27 | 176 | 2.07e-107 | 307 |
| MS.gene70839.t1 | MTR_7g075770 | 41.860 | 129 | 70 | 3 | 7 | 133 | 23 | 148 | 3.69e-25 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70839.t1 | AT1G08500 | 62.162 | 148 | 56 | 0 | 1 | 148 | 20 | 167 | 2.67e-65 | 200 |
Find 42 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGGCGTTTGGCCATGGTTT+GGG | 0.223796 | 5.3:+71770352 | MS.gene70839:CDS |
| TCCCAAGCTGAATTCTTTCT+TGG | 0.237475 | 5.3:-71768123 | None:intergenic |
| GACTCATCGTCACCGGAAAT+TGG | 0.237543 | 5.3:-71769584 | None:intergenic |
| AAAGGAACTGCCACTGTTAC+TGG | 0.264232 | 5.3:-71769410 | None:intergenic |
| CAACTGTTAATTATCAGAAA+TGG | 0.300214 | 5.3:+71768096 | MS.gene70839:CDS |
| GAATTCAACTCCTTCTTAGT+AGG | 0.323344 | 5.3:-71770403 | None:intergenic |
| TCTCCGGCTAGTCCAATTTC+CGG | 0.340374 | 5.3:+71769572 | MS.gene70839:CDS |
| AACGGCGTTTGGCCATGGTT+TGG | 0.352530 | 5.3:+71770351 | MS.gene70839:CDS |
| AGCCGGAGACGGAGAATCTT+CGG | 0.389032 | 5.3:-71769558 | None:intergenic |
| AATTGAACATCAACGGCGTT+TGG | 0.390437 | 5.3:+71770340 | MS.gene70839:CDS |
| TCATGTTTCTTAGGTTCTGT+TGG | 0.394187 | 5.3:+71768014 | MS.gene70839:intron |
| TACACAGTGGGAGATTCTTT+AGG | 0.400880 | 5.3:+71768050 | MS.gene70839:CDS |
| TTGGATTGTGTCCTTGTCTT+GGG | 0.401290 | 5.3:-71769351 | None:intergenic |
| ATTGGATTGTGTCCTTGTCT+TGG | 0.414041 | 5.3:-71769352 | None:intergenic |
| AACTGTTAATTATCAGAAAT+GGG | 0.420262 | 5.3:+71768097 | MS.gene70839:CDS |
| GTTGCCCCTTCTTTCAGTAA+AGG | 0.467797 | 5.3:-71769428 | None:intergenic |
| CGGCGTTTGGCCATGGTTTG+GGG | 0.473033 | 5.3:+71770353 | MS.gene70839:CDS |
| GCAGTTCCTTTACTGAAAGA+AGG | 0.475413 | 5.3:+71769422 | MS.gene70839:CDS |
| AATTCAACTCCTTCTTAGTA+GGG | 0.480685 | 5.3:-71770402 | None:intergenic |
| GCCAAGAAAGAATTCAGCTT+GGG | 0.483597 | 5.3:+71768122 | MS.gene70839:CDS |
| CAGTGGGAGATTCTTTAGGC+TGG | 0.508955 | 5.3:+71768054 | MS.gene70839:CDS |
| ACATCAACGGCGTTTGGCCA+TGG | 0.509784 | 5.3:+71770346 | MS.gene70839:CDS |
| ACGGATCAACTGATGACCAT+TGG | 0.511597 | 5.3:-71769370 | None:intergenic |
| CATTTCTGATAATTAACAGT+TGG | 0.517247 | 5.3:-71768095 | None:intergenic |
| CAGTTCCTTTACTGAAAGAA+GGG | 0.524215 | 5.3:+71769423 | MS.gene70839:CDS |
| TTCAAAATAAATGTGACTCA+TGG | 0.525741 | 5.3:+71769503 | MS.gene70839:CDS |
| ATCCGAAGATTCTCCGTCTC+CGG | 0.529783 | 5.3:+71769556 | MS.gene70839:CDS |
| TATATGTTTGAACAAGAGAG+TGG | 0.543824 | 5.3:-71769292 | None:intergenic |
| ATAATCACATTGTTTGTATG+TGG | 0.560805 | 5.3:-71769321 | None:intergenic |
| TGCCAAGAAAGAATTCAGCT+TGG | 0.561777 | 5.3:+71768121 | MS.gene70839:CDS |
| TCACCGGAAATTGGACTAGC+CGG | 0.571076 | 5.3:-71769575 | None:intergenic |
| TACTGGATGTATATCAGTGT+TGG | 0.593017 | 5.3:-71769393 | None:intergenic |
| GCGGTTAAATTGAACATCAA+CGG | 0.626242 | 5.3:+71770333 | MS.gene70839:intron |
| AGTTCCTTTACTGAAAGAAG+GGG | 0.634152 | 5.3:+71769424 | MS.gene70839:CDS |
| GAAATTGGACTAGCCGGAGA+CGG | 0.643836 | 5.3:-71769569 | None:intergenic |
| TTATGATGATGCCCAAGACA+AGG | 0.650355 | 5.3:+71769340 | MS.gene70839:CDS |
| ATAAATGTGACTCATGGACA+AGG | 0.658209 | 5.3:+71769509 | MS.gene70839:CDS |
| GGATGTATATCAGTGTTGGA+CGG | 0.669469 | 5.3:-71769389 | None:intergenic |
| GGAGACGGAGAATCTTCGGA+TGG | 0.673058 | 5.3:-71769554 | None:intergenic |
| TGATATACATCCAGTAACAG+TGG | 0.677787 | 5.3:+71769400 | MS.gene70839:CDS |
| AAGACAAGGACACAATCCAA+TGG | 0.682396 | 5.3:+71769354 | MS.gene70839:CDS |
| ATGTTGATGACCCCAAACCA+TGG | 0.731473 | 5.3:-71770363 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATATAAATAATAAAT+TGG | + | chr5.3:71767180-71767199 | MS.gene70839:intron | 0.0% |
| !! | ATTATTATAAAATAAATAAA+AGG | - | chr5.3:71769807-71769826 | None:intergenic | 0.0% |
| !! | ATAAAAAATTATGCTTAAAT+TGG | + | chr5.3:71768736-71768755 | MS.gene70839:intron | 10.0% |
| !! | ACAAATTAAAGAAATGAAAA+CGG | - | chr5.3:71769050-71769069 | None:intergenic | 15.0% |
| !! | TCTTTCAAAAAAAAAAACAA+CGG | - | chr5.3:71769990-71770009 | None:intergenic | 15.0% |
| !! | TGTATATTAGTAGAAAAATA+TGG | + | chr5.3:71767579-71767598 | MS.gene70839:intron | 15.0% |
| !! | TGTTAAATTATAAAGAAAAG+TGG | - | chr5.3:71766977-71766996 | None:intergenic | 15.0% |
| !!! | TATATGGTTTTTTTGAATTA+TGG | + | chr5.3:71770138-71770157 | MS.gene70839:intron | 15.0% |
| !!! | TTTCATTTCTTTAATTTGTT+TGG | + | chr5.3:71769051-71769070 | MS.gene70839:intron | 15.0% |
| !! | AAAAATAAAATCACTTACTG+AGG | - | chr5.3:71768154-71768173 | None:intergenic | 20.0% |
| !! | AAATATGGTCAAAGTAAATT+AGG | + | chr5.3:71767594-71767613 | MS.gene70839:intron | 20.0% |
| !! | AAATTTCACAACATGTTATA+TGG | + | chr5.3:71769731-71769750 | MS.gene70839:intron | 20.0% |
| !! | AACTGTTAATTATCAGAAAT+GGG | + | chr5.3:71768097-71768116 | MS.gene70839:CDS | 20.0% |
| !! | AAGAAAGGAATATTACAAAA+AGG | - | chr5.3:71768988-71769007 | None:intergenic | 20.0% |
| !! | CAAATTAAAGAAATGAAAAC+GGG | - | chr5.3:71769049-71769068 | None:intergenic | 20.0% |
| !! | CTTTCAAAAAAAAAAACAAC+GGG | - | chr5.3:71769989-71770008 | None:intergenic | 20.0% |
| !! | GAAAAAAAATCAAAGACTAT+AGG | - | chr5.3:71768184-71768203 | None:intergenic | 20.0% |
| !! | TAAAGCTCAAAATTATGTAT+TGG | - | chr5.3:71767458-71767477 | None:intergenic | 20.0% |
| !! | TTATACAACAATAACATAGA+TGG | - | chr5.3:71769895-71769914 | None:intergenic | 20.0% |
| !!! | AAAATGGAGAAAATTTTCAA+TGG | - | chr5.3:71766928-71766947 | None:intergenic | 20.0% |
| !!! | ATTTGGTATAATAGCTATTT+TGG | - | chr5.3:71767696-71767715 | None:intergenic | 20.0% |
| !!! | TCTTTAATTTGTTTGGTTTT+AGG | + | chr5.3:71769058-71769077 | MS.gene70839:intron | 20.0% |
| !!! | TGATTTTTTTTCATGTTTAG+AGG | + | chr5.3:71768192-71768211 | MS.gene70839:intron | 20.0% |
| !!! | TTCTATTTTCCATTATTCTT+GGG | - | chr5.3:71767947-71767966 | None:intergenic | 20.0% |
| !!! | TTTCTAGTAAATATTTGCAA+TGG | - | chr5.3:71767253-71767272 | None:intergenic | 20.0% |
| !!! | TTTGTAATATTCCTTTCTTT+TGG | + | chr5.3:71768989-71769008 | MS.gene70839:intron | 20.0% |
| !!! | TTTTTTACAAAAGAGACAAA+CGG | - | chr5.3:71768902-71768921 | None:intergenic | 20.0% |
| ! | AAAATGTCCCTAATAAAACA+AGG | - | chr5.3:71769760-71769779 | None:intergenic | 25.0% |
| ! | AAATAAAAACACAACCACTT+AGG | - | chr5.3:71768659-71768678 | None:intergenic | 25.0% |
| ! | ATAATCACATTGTTTGTATG+TGG | - | chr5.3:71769324-71769343 | None:intergenic | 25.0% |
| ! | CAACTGTTAATTATCAGAAA+TGG | + | chr5.3:71768096-71768115 | MS.gene70839:CDS | 25.0% |
| ! | CATTTCTGATAATTAACAGT+TGG | - | chr5.3:71768098-71768117 | None:intergenic | 25.0% |
| ! | GAATATTTGTACCAAAAGAA+AGG | - | chr5.3:71769003-71769022 | None:intergenic | 25.0% |
| ! | GAATTGAACAAATCAAATAC+AGG | - | chr5.3:71770020-71770039 | None:intergenic | 25.0% |
| ! | GTTTGTGATTGATTATTTGA+TGG | + | chr5.3:71768457-71768476 | MS.gene70839:intron | 25.0% |
| ! | TATAAAGAAAAGTGGTTAGT+GGG | - | chr5.3:71766969-71766988 | None:intergenic | 25.0% |
| ! | TGACAAAGATAAAGATAAAG+AGG | + | chr5.3:71769676-71769695 | MS.gene70839:intron | 25.0% |
| ! | TTATAAAGAAAAGTGGTTAG+TGG | - | chr5.3:71766970-71766989 | None:intergenic | 25.0% |
| ! | TTCAAAATAAATGTGACTCA+TGG | + | chr5.3:71769503-71769522 | MS.gene70839:CDS | 25.0% |
| ! | TTCAAATGAGTTATCTATTG+CGG | + | chr5.3:71767632-71767651 | MS.gene70839:intron | 25.0% |
| ! | TTGCATTGAATTACTTCTAA+TGG | + | chr5.3:71768281-71768300 | MS.gene70839:intron | 25.0% |
| !! | ATTAATCTTGTCTTTTCTAG+CGG | + | chr5.3:71770314-71770333 | MS.gene70839:intron | 25.0% |
| !! | CTTCTATTTTCCATTATTCT+TGG | - | chr5.3:71767948-71767967 | None:intergenic | 25.0% |
| !! | CTTTTTCTATCATGTTTCTT+AGG | + | chr5.3:71768005-71768024 | MS.gene70839:intron | 25.0% |
| !! | GTTTGTCTCTTTTGTAAAAA+AGG | + | chr5.3:71768901-71768920 | MS.gene70839:intron | 25.0% |
| !! | TGTTAATCTGTTTTGCTAAA+TGG | - | chr5.3:71768863-71768882 | None:intergenic | 25.0% |
| !! | TTAATGGTGGAGATTAAAAA+TGG | - | chr5.3:71766944-71766963 | None:intergenic | 25.0% |
| !! | TTTTTCTCTAGTGATTATGA+TGG | + | chr5.3:71769455-71769474 | MS.gene70839:CDS | 25.0% |
| !!! | AGGAGCATAAAATTAGATTT+TGG | + | chr5.3:71768578-71768597 | MS.gene70839:intron | 25.0% |
| !!! | ATGTACTTATATGCTGTTTT+TGG | + | chr5.3:71768689-71768708 | MS.gene70839:intron | 25.0% |
| !!! | GTGTGTTTCAATTTTTTACA+TGG | + | chr5.3:71768357-71768376 | MS.gene70839:intron | 25.0% |
| !!! | TGTACTTATATGCTGTTTTT+GGG | + | chr5.3:71768690-71768709 | MS.gene70839:intron | 25.0% |
| !!! | TTGGTTTTAGGATTAAAGTT+TGG | + | chr5.3:71769070-71769089 | MS.gene70839:intron | 25.0% |
| AAACCGACATGAAATGAAAT+AGG | + | chr5.3:71767745-71767764 | MS.gene70839:intron | 30.0% | |
| AACCGACATGAAATGAAATA+GGG | + | chr5.3:71767746-71767765 | MS.gene70839:intron | 30.0% | |
| AACTTCTAATGCTTGAAACT+TGG | + | chr5.3:71767062-71767081 | MS.gene70839:intron | 30.0% | |
| ACACACAATTGAGTGTAAAT+TGG | - | chr5.3:71768343-71768362 | None:intergenic | 30.0% | |
| AGCTTACAAAAATTACACAG+TGG | + | chr5.3:71768037-71768056 | MS.gene70839:CDS | 30.0% | |
| AGTAATTCAACAGAAAGACA+AGG | + | chr5.3:71767783-71767802 | MS.gene70839:intron | 30.0% | |
| ATACCAAATAACATGCTTGT+GGG | + | chr5.3:71767707-71767726 | MS.gene70839:intron | 30.0% | |
| ATTAATTGATCAGTTGACCT+TGG | - | chr5.3:71770300-71770319 | None:intergenic | 30.0% | |
| CATATAAGTACATCACAGTT+GGG | - | chr5.3:71768682-71768701 | None:intergenic | 30.0% | |
| CTAGTATTAACTTCAAAGTG+TGG | + | chr5.3:71769164-71769183 | MS.gene70839:intron | 30.0% | |
| GAATACAAAGAAACTTGCAA+TGG | - | chr5.3:71767127-71767146 | None:intergenic | 30.0% | |
| GAATCTCTGTGTGTAAAAAA+AGG | - | chr5.3:71767100-71767119 | None:intergenic | 30.0% | |
| GCTTACAAAAATTACACAGT+GGG | + | chr5.3:71768038-71768057 | MS.gene70839:CDS | 30.0% | |
| GTGTGTAAAAAAAGGTCAAA+AGG | - | chr5.3:71767092-71767111 | None:intergenic | 30.0% | |
| TAAATTGGAAATCAGATCGA+AGG | - | chr5.3:71768328-71768347 | None:intergenic | 30.0% | |
| TATACCAAATAACATGCTTG+TGG | + | chr5.3:71767706-71767725 | MS.gene70839:intron | 30.0% | |
| TATATGTTTGAACAAGAGAG+TGG | - | chr5.3:71769295-71769314 | None:intergenic | 30.0% | |
| TCAAATGAGTTATCTATTGC+GGG | + | chr5.3:71767633-71767652 | MS.gene70839:intron | 30.0% | |
| TCAACTGTGTCAAGTATTAT+GGG | - | chr5.3:71767417-71767436 | None:intergenic | 30.0% | |
| TCTCATTAGTAGTTTCTGAA+AGG | + | chr5.3:71768558-71768577 | MS.gene70839:intron | 30.0% | |
| TGTATTCTTAGTGTGTCTTT+AGG | + | chr5.3:71769129-71769148 | MS.gene70839:intron | 30.0% | |
| TTTAATCATTGAGAAGTCTG+AGG | - | chr5.3:71767348-71767367 | None:intergenic | 30.0% | |
| ! | AATTCCTTTGAGAATCCTAT+TGG | + | chr5.3:71770035-71770054 | MS.gene70839:intron | 30.0% |
| ! | GTCTCTTTTGTAAAAAAGGA+AGG | + | chr5.3:71768905-71768924 | MS.gene70839:intron | 30.0% |
| ! | TTCTCTTTTGATACTATGAG+TGG | + | chr5.3:71769020-71769039 | MS.gene70839:intron | 30.0% |
| ! | TTTTCATGTTTAGAGGTCTT+TGG | + | chr5.3:71768199-71768218 | MS.gene70839:intron | 30.0% |
| !! | AAATTGGAAGCACTAAGAAA+AGG | + | chr5.3:71768752-71768771 | MS.gene70839:intron | 30.0% |
| !! | AATTGGAAGCACTAAGAAAA+GGG | + | chr5.3:71768753-71768772 | MS.gene70839:intron | 30.0% |
| !!! | ATGGATGCCTTGTTTTATTA+GGG | + | chr5.3:71769750-71769769 | MS.gene70839:intron | 30.0% |
| !!! | TATGGATGCCTTGTTTTATT+AGG | + | chr5.3:71769749-71769768 | MS.gene70839:intron | 30.0% |
| AAATCACATGTAACCATAGC+TGG | + | chr5.3:71767819-71767838 | MS.gene70839:intron | 35.0% | |
| ACCTATTTGGGGAATAATGT+GGG | - | chr5.3:71768818-71768837 | None:intergenic | 35.0% | |
| AGAATCCTATTGGATGATCA+AGG | + | chr5.3:71770045-71770064 | MS.gene70839:intron | 35.0% | |
| AGAGAGAGATCATGTACTAT+AGG | - | chr5.3:71768250-71768269 | None:intergenic | 35.0% | |
| AGTTCCTTTACTGAAAGAAG+GGG | + | chr5.3:71769424-71769443 | MS.gene70839:CDS | 35.0% | |
| ATAAATGTGACTCATGGACA+AGG | + | chr5.3:71769509-71769528 | MS.gene70839:CDS | 35.0% | |
| CAGTTCCTTTACTGAAAGAA+GGG | + | chr5.3:71769423-71769442 | MS.gene70839:CDS | 35.0% | |
| CTCCCTATTTCATTTCATGT+CGG | - | chr5.3:71767751-71767770 | None:intergenic | 35.0% | |
| CTTTAACATCGAAACAGAAC+TGG | - | chr5.3:71769705-71769724 | None:intergenic | 35.0% | |
| GAAGAGTGAATACTTGAGTT+GGG | - | chr5.3:71768841-71768860 | None:intergenic | 35.0% | |
| GATGGTGAACAATGCAAAAA+TGG | + | chr5.3:71769473-71769492 | MS.gene70839:CDS | 35.0% | |
| GCATATAAGTACATCACAGT+TGG | - | chr5.3:71768683-71768702 | None:intergenic | 35.0% | |
| GCGGTTAAATTGAACATCAA+CGG | + | chr5.3:71770333-71770352 | MS.gene70839:intron | 35.0% | |
| GCTTGCAAACATAAACATCA+TGG | + | chr5.3:71770218-71770237 | MS.gene70839:intron | 35.0% | |
| GGTGAGTGAAATGTGAATAA+TGG | - | chr5.3:71767926-71767945 | None:intergenic | 35.0% | |
| GTCAACTGTGTCAAGTATTA+TGG | - | chr5.3:71767418-71767437 | None:intergenic | 35.0% | |
| GTCTTGATATTACCAACACA+CGG | + | chr5.3:71770266-71770285 | MS.gene70839:intron | 35.0% | |
| TACTGGATGTATATCAGTGT+TGG | - | chr5.3:71769396-71769415 | None:intergenic | 35.0% | |
| TCATCCAATAGGATTCTCAA+AGG | - | chr5.3:71770042-71770061 | None:intergenic | 35.0% | |
| TCATGTTTCTTAGGTTCTGT+TGG | + | chr5.3:71768014-71768033 | MS.gene70839:intron | 35.0% | |
| TGAGAAAGTAGATCCACTAT+TGG | - | chr5.3:71768543-71768562 | None:intergenic | 35.0% | |
| TGATATACATCCAGTAACAG+TGG | + | chr5.3:71769400-71769419 | MS.gene70839:CDS | 35.0% | |
| TGCTGTTACTATTACGGATA+TGG | + | chr5.3:71766895-71766914 | MS.gene70839:intron | 35.0% | |
| TGCTTGTGCTACAAGATATA+TGG | + | chr5.3:71770122-71770141 | MS.gene70839:intron | 35.0% | |
| TTAGGATGGTTGAAATTGGA+AGG | - | chr5.3:71769629-71769648 | None:intergenic | 35.0% | |
| TTCCAATTTCAACCATCCTA+AGG | + | chr5.3:71769628-71769647 | MS.gene70839:intron | 35.0% | |
| TTCCTTAGGATGGTTGAAAT+TGG | - | chr5.3:71769633-71769652 | None:intergenic | 35.0% | |
| TTGGAAGGAATATTTGTGTC+TGG | - | chr5.3:71769614-71769633 | None:intergenic | 35.0% | |
| TTGGGATGCTGTTACTATTA+CGG | + | chr5.3:71766889-71766908 | MS.gene70839:intron | 35.0% | |
| TTTCACTCACCCAAGAATAA+TGG | + | chr5.3:71767935-71767954 | MS.gene70839:intron | 35.0% | |
| ! | GCTCAAAATTATGTATTGGC+AGG | - | chr5.3:71767454-71767473 | None:intergenic | 35.0% |
| ! | GGAGAAAATTTTCAATGGAG+AGG | - | chr5.3:71766923-71766942 | None:intergenic | 35.0% |
| !!! | AAGTGGTTAGTGGGTTTTAA+TGG | - | chr5.3:71766960-71766979 | None:intergenic | 35.0% |
| !!! | TAAGGACTAGCTTTTATGAC+AGG | - | chr5.3:71767878-71767897 | None:intergenic | 35.0% |
| AAGACAAGGACACAATCCAA+TGG | + | chr5.3:71769354-71769373 | MS.gene70839:CDS | 40.0% | |
| AATGTCAACACCACCAATAG+TGG | + | chr5.3:71768527-71768546 | MS.gene70839:intron | 40.0% | |
| AATTGAACATCAACGGCGTT+TGG | + | chr5.3:71770340-71770359 | MS.gene70839:CDS | 40.0% | |
| ACCCACATTATTCCCCAAAT+AGG | + | chr5.3:71768814-71768833 | MS.gene70839:intron | 40.0% | |
| ACGATCCTTGATCATCCAAT+AGG | - | chr5.3:71770053-71770072 | None:intergenic | 40.0% | |
| ACTATAGTGTCACACCTAAG+TGG | + | chr5.3:71768642-71768661 | MS.gene70839:intron | 40.0% | |
| AGTGCATAGATCTCAGAGTT+AGG | - | chr5.3:71767033-71767052 | None:intergenic | 40.0% | |
| ATATTCACTCAGCGGGAAAA+TGG | - | chr5.3:71767001-71767020 | None:intergenic | 40.0% | |
| ATGAGTTATCTATTGCGGGA+CGG | + | chr5.3:71767637-71767656 | MS.gene70839:intron | 40.0% | |
| ATTGGATTGTGTCCTTGTCT+TGG | - | chr5.3:71769355-71769374 | None:intergenic | 40.0% | |
| CAGAGGCAAACTAACAACTA+AGG | - | chr5.3:71767896-71767915 | None:intergenic | 40.0% | |
| GAAAGTAGATCCACTATTGG+TGG | - | chr5.3:71768540-71768559 | None:intergenic | 40.0% | |
| GACCTATTTGGGGAATAATG+TGG | - | chr5.3:71768819-71768838 | None:intergenic | 40.0% | |
| GAGATCTATGCACTTCACTT+GGG | + | chr5.3:71767039-71767058 | MS.gene70839:intron | 40.0% | |
| GCAGTTCCTTTACTGAAAGA+AGG | + | chr5.3:71769422-71769441 | MS.gene70839:CDS | 40.0% | |
| GCCAAGAAAGAATTCAGCTT+GGG | + | chr5.3:71768122-71768141 | MS.gene70839:CDS | 40.0% | |
| GGAAGAGTGAATACTTGAGT+TGG | - | chr5.3:71768842-71768861 | None:intergenic | 40.0% | |
| GGGATGTACTATTCTTGTTC+TGG | + | chr5.3:71768773-71768792 | MS.gene70839:intron | 40.0% | |
| GTCAAGTATTATGGGACAGA+GGG | - | chr5.3:71767409-71767428 | None:intergenic | 40.0% | |
| GTCACATGATATTCACTCAG+CGG | - | chr5.3:71767009-71767028 | None:intergenic | 40.0% | |
| GTGCATAGATCTCAGAGTTA+GGG | - | chr5.3:71767032-71767051 | None:intergenic | 40.0% | |
| TACACAGTGGGAGATTCTTT+AGG | + | chr5.3:71768050-71768069 | MS.gene70839:CDS | 40.0% | |
| TATTCACTCAGCGGGAAAAT+GGG | - | chr5.3:71767000-71767019 | None:intergenic | 40.0% | |
| TCACATGATATTCACTCAGC+GGG | - | chr5.3:71767008-71767027 | None:intergenic | 40.0% | |
| TCATCGTCACTATCTTCCTT+AGG | - | chr5.3:71769647-71769666 | None:intergenic | 40.0% | |
| TCCCAAGCTGAATTCTTTCT+TGG | - | chr5.3:71768126-71768145 | None:intergenic | 40.0% | |
| TGAATAATGGCAACTAGCAG+AGG | - | chr5.3:71767913-71767932 | None:intergenic | 40.0% | |
| TGAGATCTATGCACTTCACT+TGG | + | chr5.3:71767038-71767057 | MS.gene70839:intron | 40.0% | |
| TGCATAGATCTCAGAGTTAG+GGG | - | chr5.3:71767031-71767050 | None:intergenic | 40.0% | |
| TGCCAAGAAAGAATTCAGCT+TGG | + | chr5.3:71768121-71768140 | MS.gene70839:CDS | 40.0% | |
| TGTCAAGTATTATGGGACAG+AGG | - | chr5.3:71767410-71767429 | None:intergenic | 40.0% | |
| TGTCCCACAAGCATGTTATT+TGG | - | chr5.3:71767713-71767732 | None:intergenic | 40.0% | |
| TTGGATTGTGTCCTTGTCTT+GGG | - | chr5.3:71769354-71769373 | None:intergenic | 40.0% | |
| ! | ACTATTCTTGTTCTGGACAG+TGG | + | chr5.3:71768780-71768799 | MS.gene70839:intron | 40.0% |
| ! | GGATGTATATCAGTGTTGGA+CGG | - | chr5.3:71769392-71769411 | None:intergenic | 40.0% |
| ! | TTATGATGATGCCCAAGACA+AGG | + | chr5.3:71769340-71769359 | MS.gene70839:CDS | 40.0% |
| !! | ACTTGAGTTGGGACCTATTT+GGG | - | chr5.3:71768830-71768849 | None:intergenic | 40.0% |
| !! | CCTTATGGCTTTATCACGTT+GGG | + | chr5.3:71766871-71766890 | MS.gene70839:intron | 40.0% |
| !! | GATGGCTTTTGAAGACTCTT+CGG | - | chr5.3:71769539-71769558 | None:intergenic | 40.0% |
| !! | TACTTGAGTTGGGACCTATT+TGG | - | chr5.3:71768831-71768850 | None:intergenic | 40.0% |
| !! | TCCTTATGGCTTTATCACGT+TGG | + | chr5.3:71766870-71766889 | MS.gene70839:intron | 40.0% |
| !!! | TGGTTAGTGGGTTTTAATGG+TGG | - | chr5.3:71766957-71766976 | None:intergenic | 40.0% |
| AAAGGAACTGCCACTGTTAC+TGG | - | chr5.3:71769413-71769432 | None:intergenic | 45.0% | |
| AACACACGGTTATGACACCA+AGG | + | chr5.3:71770280-71770299 | MS.gene70839:intron | 45.0% | |
| AATGCCAAAGTGACAGTTGC+TGG | + | chr5.3:71768961-71768980 | MS.gene70839:intron | 45.0% | |
| ACCACGTGTCTACTTCCTTA+TGG | + | chr5.3:71766856-71766875 | MS.gene70839:intron | 45.0% | |
| ACGGATCAACTGATGACCAT+TGG | - | chr5.3:71769373-71769392 | None:intergenic | 45.0% | |
| ATGCCAAAGTGACAGTTGCT+GGG | + | chr5.3:71768962-71768981 | MS.gene70839:intron | 45.0% | |
| ATTGGCAGGCATGCGTAATA+AGG | - | chr5.3:71767440-71767459 | None:intergenic | 45.0% | |
| CCCAACGTGATAAAGCCATA+AGG | - | chr5.3:71766874-71766893 | None:intergenic | 45.0% | |
| CGTCACTATCTTCCTTAGGA+TGG | - | chr5.3:71769643-71769662 | None:intergenic | 45.0% | |
| GATTCATATGCTGCCAGCTA+TGG | - | chr5.3:71767835-71767854 | None:intergenic | 45.0% | |
| GTTGCCCCTTCTTTCAGTAA+AGG | - | chr5.3:71769431-71769450 | None:intergenic | 45.0% | |
| TAGAAGCCATAGCGGTAAGT+CGG | - | chr5.3:71766837-71766856 | None:intergenic | 45.0% | |
| TGACGTGAGATTGTGAGCTA+GGG | + | chr5.3:71769865-71769884 | MS.gene70839:intron | 45.0% | |
| TTGACGTGAGATTGTGAGCT+AGG | + | chr5.3:71769864-71769883 | MS.gene70839:intron | 45.0% | |
| ! | AGCTTTTATGACAGGCTCAG+TGG | - | chr5.3:71767870-71767889 | None:intergenic | 45.0% |
| !! | ATGTTGATGACCCCAAACCA+TGG | - | chr5.3:71770366-71770385 | None:intergenic | 45.0% |
| !! | CTTGAGTTGGGACCTATTTG+GGG | - | chr5.3:71768829-71768848 | None:intergenic | 45.0% |
| !! | TTGGTGTCATAACCGTGTGT+TGG | - | chr5.3:71770281-71770300 | None:intergenic | 45.0% |
| ACACGTGGTAGAAGCCATAG+CGG | - | chr5.3:71766845-71766864 | None:intergenic | 50.0% | |
| AGTTATCTATTGCGGGACGG+AGG | + | chr5.3:71767640-71767659 | MS.gene70839:intron | 50.0% | |
| ATCCGAAGATTCTCCGTCTC+CGG | + | chr5.3:71769556-71769575 | MS.gene70839:CDS | 50.0% | |
| CAGTGGGAGATTCTTTAGGC+TGG | + | chr5.3:71768054-71768073 | MS.gene70839:CDS | 50.0% | |
| GACTCATCGTCACCGGAAAT+TGG | - | chr5.3:71769587-71769606 | None:intergenic | 50.0% | |
| GCCATAAGGAAGTAGACACG+TGG | - | chr5.3:71766860-71766879 | None:intergenic | 50.0% | |
| GGCTCAGTGGATGAGAATGT+AGG | - | chr5.3:71767857-71767876 | None:intergenic | 50.0% | |
| GTTATCTATTGCGGGACGGA+GGG | + | chr5.3:71767641-71767660 | MS.gene70839:intron | 50.0% | |
| ! | TCTCCGGCTAGTCCAATTTC+CGG | + | chr5.3:71769572-71769591 | MS.gene70839:CDS | 50.0% |
| !! | GAAATTGGACTAGCCGGAGA+CGG | - | chr5.3:71769572-71769591 | None:intergenic | 50.0% |
| !! | TCACCGGAAATTGGACTAGC+CGG | - | chr5.3:71769578-71769597 | None:intergenic | 50.0% |
| AACGGCGTTTGGCCATGGTT+TGG | + | chr5.3:71770351-71770370 | MS.gene70839:CDS | 55.0% | |
| AAGCCATAGCGGTAAGTCGG+TGG | - | chr5.3:71766834-71766853 | None:intergenic | 55.0% | |
| ACATCAACGGCGTTTGGCCA+TGG | + | chr5.3:71770346-71770365 | MS.gene70839:CDS | 55.0% | |
| ACGGCGTTTGGCCATGGTTT+GGG | + | chr5.3:71770352-71770371 | MS.gene70839:CDS | 55.0% | |
| AGCCGGAGACGGAGAATCTT+CGG | - | chr5.3:71769561-71769580 | None:intergenic | 55.0% | |
| GGAGACGGAGAATCTTCGGA+TGG | - | chr5.3:71769557-71769576 | None:intergenic | 55.0% | |
| ! | AGGCCCAGCAACTGTCACTT+TGG | - | chr5.3:71768968-71768987 | None:intergenic | 55.0% |
| !! | ATGCCACCGACTTACCGCTA+TGG | + | chr5.3:71766828-71766847 | MS.gene70839:intron | 55.0% |
| CGGCGTTTGGCCATGGTTTG+GGG | + | chr5.3:71770353-71770372 | MS.gene70839:CDS | 60.0% | |
| TGGCGCAGACTCATCGTCAC+CGG | - | chr5.3:71769594-71769613 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 71766815 | 71770410 | 71766815 | ID=MS.gene70839 |
| chr5.3 | mRNA | 71766815 | 71770410 | 71766815 | ID=MS.gene70839.t1;Parent=MS.gene70839 |
| chr5.3 | exon | 71766815 | 71766821 | 71766815 | ID=MS.gene70839.t1.exon1;Parent=MS.gene70839.t1 |
| chr5.3 | CDS | 71766815 | 71766821 | 71766815 | ID=cds.MS.gene70839.t1;Parent=MS.gene70839.t1 |
| chr5.3 | exon | 71768027 | 71768155 | 71768027 | ID=MS.gene70839.t1.exon2;Parent=MS.gene70839.t1 |
| chr5.3 | CDS | 71768027 | 71768155 | 71768027 | ID=cds.MS.gene70839.t1;Parent=MS.gene70839.t1 |
| chr5.3 | exon | 71769273 | 71769593 | 71769273 | ID=MS.gene70839.t1.exon3;Parent=MS.gene70839.t1 |
| chr5.3 | CDS | 71769273 | 71769593 | 71769273 | ID=cds.MS.gene70839.t1;Parent=MS.gene70839.t1 |
| chr5.3 | exon | 71770334 | 71770410 | 71770334 | ID=MS.gene70839.t1.exon4;Parent=MS.gene70839.t1 |
| chr5.3 | CDS | 71770334 | 71770410 | 71770334 | ID=cds.MS.gene70839.t1;Parent=MS.gene70839.t1 |
| Gene Sequence |
| Protein sequence |
