Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70988.t1 | GAU46387.1 | 62.1 | 195 | 17 | 2 | 12 | 156 | 119 | 306 | 8.90E-47 | 197.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70988.t1 | K7LC65 | 56.4 | 195 | 25 | 2 | 12 | 156 | 109 | 293 | 6.7e-43 | 175.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70988.t1 | A0A2Z6PLX5 | 62.1 | 195 | 17 | 2 | 12 | 156 | 119 | 306 | 6.4e-47 | 197.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene70988 | -0.807418 | 5.10E-50 | -1.69E-46 |
| MS.gene04917 | MS.gene70988 | -0.804404 | 2.20E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene70988 | 0.800996 | 1.11E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70988.t1 | MTR_2g039940 | 61.735 | 196 | 14 | 3 | 12 | 156 | 130 | 315 | 3.56e-63 | 206 |
| MS.gene70988.t1 | MTR_4g125980 | 51.220 | 205 | 35 | 4 | 2 | 156 | 94 | 283 | 4.91e-52 | 176 |
| MS.gene70988.t1 | MTR_4g125980 | 51.220 | 205 | 35 | 4 | 2 | 156 | 94 | 283 | 1.19e-51 | 175 |
| MS.gene70988.t1 | MTR_4g125980 | 56.934 | 137 | 41 | 3 | 27 | 156 | 23 | 148 | 1.27e-40 | 143 |
| MS.gene70988.t1 | MTR_8g095520 | 80.822 | 73 | 8 | 1 | 181 | 247 | 159 | 231 | 3.00e-32 | 124 |
| MS.gene70988.t1 | MTR_3g098380 | 56.667 | 60 | 26 | 0 | 188 | 247 | 193 | 252 | 3.06e-17 | 81.3 |
| MS.gene70988.t1 | MTR_7g113130 | 56.667 | 60 | 25 | 1 | 188 | 247 | 174 | 232 | 1.87e-14 | 72.8 |
| MS.gene70988.t1 | MTR_7g113130 | 56.667 | 60 | 25 | 1 | 188 | 247 | 174 | 232 | 1.94e-14 | 72.8 |
| MS.gene70988.t1 | MTR_7g113130 | 56.667 | 60 | 25 | 1 | 188 | 247 | 174 | 232 | 1.95e-14 | 72.8 |
| MS.gene70988.t1 | MTR_1g083290 | 58.333 | 60 | 24 | 1 | 188 | 247 | 161 | 219 | 2.05e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70988.t1 | AT2G19450 | 47.692 | 195 | 35 | 2 | 12 | 156 | 120 | 297 | 8.66e-44 | 154 |
| MS.gene70988.t1 | AT5G47910 | 47.692 | 65 | 34 | 0 | 183 | 247 | 200 | 264 | 1.98e-13 | 70.1 |
| MS.gene70988.t1 | AT5G51060 | 60.000 | 50 | 20 | 0 | 198 | 247 | 188 | 237 | 3.89e-12 | 66.2 |
Find 49 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTATTCTATCCTCCTTT+TGG | 0.267859 | 8.4:+37601238 | MS.gene70988:CDS |
| CAGACCAAAGCTTTGATACT+AGG | 0.290247 | 8.4:+37601749 | MS.gene70988:CDS |
| AGATCCAGTTTAGGGAGTTC+TGG | 0.296332 | 8.4:+37601716 | MS.gene70988:CDS |
| CAAGAGTTTAGCATACTTCA+TGG | 0.303155 | 8.4:+37600870 | MS.gene70988:CDS |
| CGATTAACAAGATCCAGTTT+AGG | 0.323576 | 8.4:+37601707 | MS.gene70988:CDS |
| TTGCATAGTGTGGTTAAAAT+TGG | 0.337241 | 8.4:+37600468 | MS.gene70988:CDS |
| GATTAACAAGATCCAGTTTA+GGG | 0.337450 | 8.4:+37601708 | MS.gene70988:CDS |
| AGTGCCTGATACTTTGAATA+TGG | 0.344744 | 8.4:+37600825 | MS.gene70988:CDS |
| TACTCCATATTCAAAGTATC+AGG | 0.365199 | 8.4:-37600829 | None:intergenic |
| GACCTGAGGATGACTAAAAC+TGG | 0.382726 | 8.4:-37599805 | None:intergenic |
| GACAAAATGCATCAAAGATC+AGG | 0.394937 | 8.4:-37601300 | None:intergenic |
| TGAGCCTAGTATCAAAGCTT+TGG | 0.396068 | 8.4:-37601753 | None:intergenic |
| AGTCCCAGAACTCCCTAAAC+TGG | 0.398261 | 8.4:-37601720 | None:intergenic |
| AGTATTTCGATAAATATAAG+AGG | 0.424082 | 8.4:+37600556 | MS.gene70988:CDS |
| GATCCAGTTTAGGGAGTTCT+GGG | 0.425992 | 8.4:+37601717 | MS.gene70988:CDS |
| TATTATTGAAAATCTGATGA+AGG | 0.454922 | 8.4:+37599482 | MS.gene70988:CDS |
| CAAACTACATCTACCGCAGC+TGG | 0.465385 | 8.4:-37601323 | None:intergenic |
| GTTACCTGGTAGCATAATGT+AGG | 0.471407 | 8.4:-37600898 | None:intergenic |
| CTCTTGAAGTTCACATTGTG+TGG | 0.476660 | 8.4:-37600853 | None:intergenic |
| GCTCGGCAGAGAGGGATTCA+AGG | 0.486020 | 8.4:+37601679 | MS.gene70988:CDS |
| AGCAAGCGCTCTCATATCAT+AGG | 0.491205 | 8.4:-37600509 | None:intergenic |
| AAGCTAAGCAGCTGACCAAA+AGG | 0.503222 | 8.4:-37601253 | None:intergenic |
| TGCTTGTTGCGGTGAATAGT+AGG | 0.505850 | 8.4:+37599457 | MS.gene70988:CDS |
| ACTGTGAGAGTGGGAGGAGA+CGG | 0.516516 | 8.4:-37599387 | None:intergenic |
| CTGTGAGAGTGGGAGGAGAC+GGG | 0.530336 | 8.4:-37599386 | None:intergenic |
| ATACTCTTGCTCGGCAGAGA+GGG | 0.537758 | 8.4:+37601671 | MS.gene70988:CDS |
| CTGTATTGTGGTGCTTGTTG+CGG | 0.545649 | 8.4:+37599446 | MS.gene70988:CDS |
| AGAGTGGGAGGAGACGGGCC+AGG | 0.547841 | 8.4:-37599381 | None:intergenic |
| GTCGGCCGTCAGAGTCATGC+AGG | 0.562411 | 8.4:+37599411 | MS.gene70988:CDS |
| ACGGCCGACGACTGTGAGAG+TGG | 0.564111 | 8.4:-37599397 | None:intergenic |
| TGCTCCTACATTATGCTACC+AGG | 0.572609 | 8.4:+37600894 | MS.gene70988:CDS |
| AGGATTGAATGAAGAGTCAA+AGG | 0.577878 | 8.4:+37601627 | MS.gene70988:intron |
| TGCTATTGACTTGCATAGTG+TGG | 0.598533 | 8.4:+37600458 | MS.gene70988:CDS |
| ACAAAATGCATCAAAGATCA+GGG | 0.602070 | 8.4:-37601299 | None:intergenic |
| TCTTGAAGTTCACATTGTGT+GGG | 0.616470 | 8.4:-37600852 | None:intergenic |
| AAACTACATCTACCGCAGCT+GGG | 0.618191 | 8.4:-37601322 | None:intergenic |
| CGGCCGACGACTGTGAGAGT+GGG | 0.631495 | 8.4:-37599396 | None:intergenic |
| CCGACGACTGTGAGAGTGGG+AGG | 0.636823 | 8.4:-37599393 | None:intergenic |
| CTAAGCAGCTGACCAAAAGG+AGG | 0.637879 | 8.4:-37601250 | None:intergenic |
| ACTGTTCAATCTCTGTATTG+TGG | 0.642176 | 8.4:+37599434 | MS.gene70988:CDS |
| GCTTGCTGTTTCAAATGACA+AGG | 0.642596 | 8.4:+37600525 | MS.gene70988:CDS |
| TAAACAGTGAAAACTCAACC+TGG | 0.656229 | 8.4:+37599363 | MS.gene70988:intron |
| GATACTCTTGCTCGGCAGAG+AGG | 0.662539 | 8.4:+37601670 | MS.gene70988:CDS |
| CCTCCCACTCTCACAGTCGT+CGG | 0.663847 | 8.4:+37599393 | MS.gene70988:CDS |
| ACAGTCCTGCATGACTCTGA+CGG | 0.673299 | 8.4:-37599416 | None:intergenic |
| CGGCAGAGAGGGATTCAAGG+AGG | 0.710701 | 8.4:+37601682 | MS.gene70988:CDS |
| TACGAAGAGATGGAGAGACA+AGG | 0.711333 | 8.4:+37598906 | None:intergenic |
| TCAGGGTCAAAACCCAACAG+AGG | 0.721005 | 8.4:-37601282 | None:intergenic |
| GCAAGTCAATAGCATCAACG+TGG | 0.767827 | 8.4:-37600449 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATAATATCTATAATAAA+AGG | + | chr8.4:37600330-37600349 | MS.gene70988:intron | 10.0% |
| !!! | ATTTATTTTAAACATTGATT+TGG | + | chr8.4:37600294-37600313 | MS.gene70988:intron | 10.0% |
| !!! | ACAATTTTAACAATATTGTA+TGG | - | chr8.4:37599130-37599149 | None:intergenic | 15.0% |
| !!! | CTTATTTATGACTATATTTT+TGG | + | chr8.4:37601072-37601091 | MS.gene70988:intron | 15.0% |
| !! | AATATAATTAGAAACACAGA+AGG | + | chr8.4:37600095-37600114 | MS.gene70988:intron | 20.0% |
| !! | AGTATTTCGATAAATATAAG+AGG | + | chr8.4:37600556-37600575 | MS.gene70988:CDS | 20.0% |
| !! | ATGAAATTATGTCAATATCT+AGG | + | chr8.4:37599958-37599977 | MS.gene70988:intron | 20.0% |
| !! | TATTATTGAAAATCTGATGA+AGG | + | chr8.4:37599482-37599501 | MS.gene70988:CDS | 20.0% |
| !! | TTAATTAGTGGCAAAATTAA+AGG | - | chr8.4:37599158-37599177 | None:intergenic | 20.0% |
| !!! | AAAGCATTTTTTTTACAAGT+TGG | - | chr8.4:37599538-37599557 | None:intergenic | 20.0% |
| !!! | AAATTTTTCCTTCAATTTGT+GGG | + | chr8.4:37601475-37601494 | MS.gene70988:intron | 20.0% |
| !!! | AATTTTGCCACTAATTAATT+AGG | + | chr8.4:37599160-37599179 | MS.gene70988:intron | 20.0% |
| !!! | ATAGTTGATGTTTTTTTGAT+TGG | - | chr8.4:37598947-37598966 | None:intergenic | 20.0% |
| !!! | CTATAATAAAAGGTTTTTCT+TGG | + | chr8.4:37600340-37600359 | MS.gene70988:intron | 20.0% |
| !!! | TAATTATATGTTTTGCAGTA+TGG | + | chr8.4:37599606-37599625 | MS.gene70988:intron | 20.0% |
| !!! | TCTTTTTCCTAATTAATTAG+TGG | - | chr8.4:37599170-37599189 | None:intergenic | 20.0% |
| !!! | TTATGACTATATTTTTGGTT+TGG | + | chr8.4:37601077-37601096 | MS.gene70988:intron | 20.0% |
| !!! | TTTTAAGTCTATTCTTAAAG+AGG | - | chr8.4:37599718-37599737 | None:intergenic | 20.0% |
| ! | AAATAAATGCATGCAAATGT+CGG | - | chr8.4:37601014-37601033 | None:intergenic | 25.0% |
| ! | AATTATGTCAATATCTAGGA+AGG | + | chr8.4:37599962-37599981 | MS.gene70988:intron | 25.0% |
| ! | ATATTCATGTCATGTGATAA+AGG | + | chr8.4:37600168-37600187 | MS.gene70988:intron | 25.0% |
| ! | ATTATGTCAATATCTAGGAA+GGG | + | chr8.4:37599963-37599982 | MS.gene70988:intron | 25.0% |
| !! | AAAAATTTGAGATAAGAGCT+AGG | - | chr8.4:37601463-37601482 | None:intergenic | 25.0% |
| !! | AAAATTTGAGATAAGAGCTA+GGG | - | chr8.4:37601462-37601481 | None:intergenic | 25.0% |
| !! | AGTTAAAAACTTTTGTTACC+TGG | - | chr8.4:37600915-37600934 | None:intergenic | 25.0% |
| !! | AGTTGGAAATTCAAATTTTG+CGG | - | chr8.4:37599521-37599540 | None:intergenic | 25.0% |
| !! | CAAATTTTTCCTTCAATTTG+TGG | + | chr8.4:37601474-37601493 | MS.gene70988:intron | 25.0% |
| !!! | AACATTGATTTGGTTTATGA+TGG | + | chr8.4:37600304-37600323 | MS.gene70988:intron | 25.0% |
| AAAAGTTTCAAAGCTGTTTG+AGG | + | chr8.4:37600017-37600036 | MS.gene70988:intron | 30.0% | |
| AAACACAGAAGGTAATTTCA+AGG | + | chr8.4:37600106-37600125 | MS.gene70988:intron | 30.0% | |
| AACACAGAAGGTAATTTCAA+GGG | + | chr8.4:37600107-37600126 | MS.gene70988:intron | 30.0% | |
| ACAAAATGCATCAAAGATCA+GGG | - | chr8.4:37601302-37601321 | None:intergenic | 30.0% | |
| ACAGGTAACATGATTGAATA+AGG | - | chr8.4:37600790-37600809 | None:intergenic | 30.0% | |
| AGGTAACATGATTGAATAAG+GGG | - | chr8.4:37600788-37600807 | None:intergenic | 30.0% | |
| ATTTCAAGGGAACAAACAAT+TGG | + | chr8.4:37600120-37600139 | MS.gene70988:intron | 30.0% | |
| CAGGTAACATGATTGAATAA+GGG | - | chr8.4:37600789-37600808 | None:intergenic | 30.0% | |
| GATTAACAAGATCCAGTTTA+GGG | + | chr8.4:37601708-37601727 | MS.gene70988:CDS | 30.0% | |
| GGTATTGTGAAGATATCTTA+TGG | + | chr8.4:37600379-37600398 | MS.gene70988:intron | 30.0% | |
| GTAGTTTCTAAGTGTTTCTT+TGG | + | chr8.4:37601594-37601613 | MS.gene70988:intron | 30.0% | |
| GTTATGCTATATGTTCTATG+TGG | + | chr8.4:37600578-37600597 | MS.gene70988:intron | 30.0% | |
| GTTGTAACTATAGCTTAGAT+AGG | - | chr8.4:37601355-37601374 | None:intergenic | 30.0% | |
| GTTTCTTTGGATTCAATTGT+AGG | + | chr8.4:37601607-37601626 | MS.gene70988:intron | 30.0% | |
| TTATTCAATCATGTTACCTG+TGG | + | chr8.4:37600789-37600808 | MS.gene70988:intron | 30.0% | |
| TTGCATAGTGTGGTTAAAAT+TGG | + | chr8.4:37600468-37600487 | MS.gene70988:CDS | 30.0% | |
| TTTCAAGGGAACAAACAATT+GGG | + | chr8.4:37600121-37600140 | MS.gene70988:intron | 30.0% | |
| ! | ATTAGTTTAGATAGAAGTCG+AGG | - | chr8.4:37599853-37599872 | None:intergenic | 30.0% |
| ! | GTTGAGTTTTCACTGTTTAA+CGG | - | chr8.4:37599362-37599381 | None:intergenic | 30.0% |
| ! | GTTTTTCTTGGTCATTTCAT+GGG | + | chr8.4:37600352-37600371 | MS.gene70988:intron | 30.0% |
| ! | TACTCCATATTCAAAGTATC+AGG | - | chr8.4:37600832-37600851 | None:intergenic | 30.0% |
| ! | TATATGTTTTGCAGTATGGA+TGG | + | chr8.4:37599610-37599629 | MS.gene70988:intron | 30.0% |
| ! | TTTTATGCTCAAGAAACACA+TGG | - | chr8.4:37600256-37600275 | None:intergenic | 30.0% |
| !! | AAAGTTGATTTGAATGTTGC+AGG | + | chr8.4:37599735-37599754 | MS.gene70988:intron | 30.0% |
| !!! | CATTAGTGGATTTTTTCCTA+TGG | + | chr8.4:37601169-37601188 | MS.gene70988:intron | 30.0% |
| !!! | GGGATTTTGTGTTTTGAAAA+TGG | + | chr8.4:37601516-37601535 | MS.gene70988:intron | 30.0% |
| AAAAATACCCATGCCACATA+AGG | - | chr8.4:37599232-37599251 | None:intergenic | 35.0% | |
| AAAATACCCATGCCACATAA+GGG | - | chr8.4:37599231-37599250 | None:intergenic | 35.0% | |
| AACAATTGGGAACAACTTTG+TGG | + | chr8.4:37600134-37600153 | MS.gene70988:intron | 35.0% | |
| ACTGTTCAATCTCTGTATTG+TGG | + | chr8.4:37599434-37599453 | MS.gene70988:CDS | 35.0% | |
| ACTTCTGTCTCAAATGTGAT+TGG | + | chr8.4:37601379-37601398 | MS.gene70988:intron | 35.0% | |
| AGGATTGAATGAAGAGTCAA+AGG | + | chr8.4:37601627-37601646 | MS.gene70988:intron | 35.0% | |
| AGTGCCTGATACTTTGAATA+TGG | + | chr8.4:37600825-37600844 | MS.gene70988:CDS | 35.0% | |
| ATAAAAGTTGAGCACATCTG+TGG | + | chr8.4:37600270-37600289 | MS.gene70988:intron | 35.0% | |
| ATCATGTTACCTGTGGTATA+AGG | + | chr8.4:37600796-37600815 | MS.gene70988:intron | 35.0% | |
| CAAGAGTTTAGCATACTTCA+TGG | + | chr8.4:37600870-37600889 | MS.gene70988:CDS | 35.0% | |
| CACTAATGAAGAGAGAACTT+GGG | - | chr8.4:37601157-37601176 | None:intergenic | 35.0% | |
| CGATTAACAAGATCCAGTTT+AGG | + | chr8.4:37601707-37601726 | MS.gene70988:CDS | 35.0% | |
| GAAGATATCTTATGGATTCG+TGG | + | chr8.4:37600387-37600406 | MS.gene70988:intron | 35.0% | |
| GACAAAATGCATCAAAGATC+AGG | - | chr8.4:37601303-37601322 | None:intergenic | 35.0% | |
| GCTTCTTTGCATGTACAATT+TGG | + | chr8.4:37601407-37601426 | MS.gene70988:intron | 35.0% | |
| GGTTTGAGGGTTGTAATTTA+GGG | + | chr8.4:37601496-37601515 | MS.gene70988:intron | 35.0% | |
| GTTACATGAATGTCTGTCAA+AGG | - | chr8.4:37600194-37600213 | None:intergenic | 35.0% | |
| TAAACAGTGAAAACTCAACC+TGG | + | chr8.4:37599363-37599382 | MS.gene70988:intron | 35.0% | |
| TAAAGATCAGAGACAAGTTG+AGG | - | chr8.4:37601202-37601221 | None:intergenic | 35.0% | |
| TACGAACCAAACACTAAATG+AGG | - | chr8.4:37600045-37600064 | None:intergenic | 35.0% | |
| TCTTGAAGTTCACATTGTGT+GGG | - | chr8.4:37600855-37600874 | None:intergenic | 35.0% | |
| TTTAAGTCTATACTGACCTG+AGG | - | chr8.4:37599822-37599841 | None:intergenic | 35.0% | |
| ! | CACATTTGAGACAGAAGTAA+GGG | - | chr8.4:37601377-37601396 | None:intergenic | 35.0% |
| ! | GGTTTTTCTTGGTCATTTCA+TGG | + | chr8.4:37600351-37600370 | MS.gene70988:intron | 35.0% |
| ! | TAGCTTTTATAGCCTCTGTT+GGG | + | chr8.4:37601270-37601289 | MS.gene70988:CDS | 35.0% |
| ! | TCACATTTGAGACAGAAGTA+AGG | - | chr8.4:37601378-37601397 | None:intergenic | 35.0% |
| ! | TGTCTATTCTATCCTCCTTT+TGG | + | chr8.4:37601238-37601257 | MS.gene70988:CDS | 35.0% |
| ! | TTCTGATGAAAGCACATACA+AGG | + | chr8.4:37601035-37601054 | MS.gene70988:intron | 35.0% |
| !! | ATCAAAAAGCATCTCAGCAT+AGG | - | chr8.4:37601653-37601672 | None:intergenic | 35.0% |
| !! | TGCTTTTTGATACTCTTGCT+CGG | + | chr8.4:37601662-37601681 | MS.gene70988:CDS | 35.0% |
| !! | TTAGCTTTTATAGCCTCTGT+TGG | + | chr8.4:37601269-37601288 | MS.gene70988:CDS | 35.0% |
| !!! | GTCTGAGGTTTTTAGAGTAA+GGG | + | chr8.4:37601105-37601124 | MS.gene70988:intron | 35.0% |
| !!! | TGCGATTCTGCTTTTTTATC+TGG | + | chr8.4:37600424-37600443 | MS.gene70988:CDS | 35.0% |
| !!! | TGTCTGAGGTTTTTAGAGTA+AGG | + | chr8.4:37601104-37601123 | MS.gene70988:intron | 35.0% |
| AAATACCCATGCCACATAAG+GGG | - | chr8.4:37599230-37599249 | None:intergenic | 40.0% | |
| ACCACATTTAGCACAAGAGA+TGG | - | chr8.4:37601435-37601454 | None:intergenic | 40.0% | |
| ATACTACAGTGTAATCACGC+AGG | - | chr8.4:37600628-37600647 | None:intergenic | 40.0% | |
| CATTACCAACACATGAAGAG+GGG | - | chr8.4:37599684-37599703 | None:intergenic | 40.0% | |
| CCAAGTTCTCTCTTCATTAG+TGG | + | chr8.4:37601155-37601174 | MS.gene70988:intron | 40.0% | |
| CCACTAATGAAGAGAGAACT+TGG | - | chr8.4:37601158-37601177 | None:intergenic | 40.0% | |
| CCATTACCAACACATGAAGA+GGG | - | chr8.4:37599685-37599704 | None:intergenic | 40.0% | |
| CCTTCAATTTGTGGGTTTGA+GGG | + | chr8.4:37601483-37601502 | MS.gene70988:intron | 40.0% | |
| CGTGATTACACTGTAGTATG+TGG | + | chr8.4:37600629-37600648 | MS.gene70988:intron | 40.0% | |
| CTCTTGAAGTTCACATTGTG+TGG | - | chr8.4:37600856-37600875 | None:intergenic | 40.0% | |
| GAGATCTAAGAGAGAGAAGA+GGG | - | chr8.4:37599283-37599302 | None:intergenic | 40.0% | |
| GAGGAACCTCATTTAGTGTT+TGG | + | chr8.4:37600036-37600055 | MS.gene70988:intron | 40.0% | |
| GGGTTTGAGGGTTGTAATTT+AGG | + | chr8.4:37601495-37601514 | MS.gene70988:intron | 40.0% | |
| GTTACCTGGTAGCATAATGT+AGG | - | chr8.4:37600901-37600920 | None:intergenic | 40.0% | |
| GTTCAAAATCGCTGAGAGAT+TGG | + | chr8.4:37599658-37599677 | MS.gene70988:intron | 40.0% | |
| TCCATCTCTTGTGCTAAATG+TGG | + | chr8.4:37601431-37601450 | MS.gene70988:intron | 40.0% | |
| TCCTTCAATTTGTGGGTTTG+AGG | + | chr8.4:37601482-37601501 | MS.gene70988:intron | 40.0% | |
| TGAGCCTAGTATCAAAGCTT+TGG | - | chr8.4:37601756-37601775 | None:intergenic | 40.0% | |
| ! | ACTGTTTCTCCTTATACCAC+AGG | - | chr8.4:37600808-37600827 | None:intergenic | 40.0% |
| ! | CAATATTGTATGGCTCTACG+TGG | - | chr8.4:37599120-37599139 | None:intergenic | 40.0% |
| ! | CAGACCAAAGCTTTGATACT+AGG | + | chr8.4:37601749-37601768 | MS.gene70988:CDS | 40.0% |
| ! | TGGCGTGTTCGACAATTTTT+AGG | + | chr8.4:37599023-37599042 | MS.gene70988:intron | 40.0% |
| !! | ATCCAGTTTTAGTCATCCTC+AGG | + | chr8.4:37599803-37599822 | MS.gene70988:CDS | 40.0% |
| !! | CCTCTTCATGTGTTGGTAAT+GGG | + | chr8.4:37599683-37599702 | MS.gene70988:intron | 40.0% |
| !! | GCTTGCTGTTTCAAATGACA+AGG | + | chr8.4:37600525-37600544 | MS.gene70988:CDS | 40.0% |
| !! | GTCTCAAATGTGATTGGTCT+CGG | + | chr8.4:37601385-37601404 | MS.gene70988:intron | 40.0% |
| !! | TATGGATGGTTGATTCGATC+TGG | + | chr8.4:37599624-37599643 | MS.gene70988:intron | 40.0% |
| !! | TGCTATTGACTTGCATAGTG+TGG | + | chr8.4:37600458-37600477 | MS.gene70988:CDS | 40.0% |
| !! | TTTGGTTTGGAGTATGTCTG+AGG | + | chr8.4:37601090-37601109 | MS.gene70988:intron | 40.0% |
| !!! | CTACGTGGTTTGGTCAATTT+TGG | - | chr8.4:37599105-37599124 | None:intergenic | 40.0% |
| AAACTACATCTACCGCAGCT+GGG | - | chr8.4:37601325-37601344 | None:intergenic | 45.0% | |
| AAGCTAAGCAGCTGACCAAA+AGG | - | chr8.4:37601256-37601275 | None:intergenic | 45.0% | |
| AAGTTGAGGAAGCAGTCCAT+AGG | - | chr8.4:37601188-37601207 | None:intergenic | 45.0% | |
| AGAAGCCAAGAACAGAGGAT+TGG | - | chr8.4:37600701-37600720 | None:intergenic | 45.0% | |
| AGAGTGAGAGGGAGAAGAAA+GGG | - | chr8.4:37599305-37599324 | None:intergenic | 45.0% | |
| AGATCCAGTTTAGGGAGTTC+TGG | + | chr8.4:37601716-37601735 | MS.gene70988:CDS | 45.0% | |
| AGCAAGCGCTCTCATATCAT+AGG | - | chr8.4:37600512-37600531 | None:intergenic | 45.0% | |
| ATACACCCCTTATGTGGCAT+GGG | + | chr8.4:37599222-37599241 | MS.gene70988:intron | 45.0% | |
| ATGGAAGAGTGGTATGGAGA+AGG | - | chr8.4:37599204-37599223 | None:intergenic | 45.0% | |
| CAAGAACAGAGGATTGGAAG+TGG | - | chr8.4:37600695-37600714 | None:intergenic | 45.0% | |
| CACTGTTTAACGGAGAGAGT+GGG | - | chr8.4:37599352-37599371 | None:intergenic | 45.0% | |
| CACTTCCAATCCTCTGTTCT+TGG | + | chr8.4:37600693-37600712 | MS.gene70988:intron | 45.0% | |
| CCCATTACCAACACATGAAG+AGG | - | chr8.4:37599686-37599705 | None:intergenic | 45.0% | |
| CCCTCAAACCCACAAATTGA+AGG | - | chr8.4:37601486-37601505 | None:intergenic | 45.0% | |
| CTTGGTCATTTCATGGGCAT+TGG | + | chr8.4:37600358-37600377 | MS.gene70988:intron | 45.0% | |
| GACCTGAGGATGACTAAAAC+TGG | - | chr8.4:37599808-37599827 | None:intergenic | 45.0% | |
| GATCCAGTTTAGGGAGTTCT+GGG | + | chr8.4:37601717-37601736 | MS.gene70988:CDS | 45.0% | |
| GATTGGAAGTGGAAGCAGAA+TGG | - | chr8.4:37600684-37600703 | None:intergenic | 45.0% | |
| GCAAGTCAATAGCATCAACG+TGG | - | chr8.4:37600452-37600471 | None:intergenic | 45.0% | |
| GGAGATCTAAGAGAGAGAAG+AGG | - | chr8.4:37599284-37599303 | None:intergenic | 45.0% | |
| TCACTGTTTAACGGAGAGAG+TGG | - | chr8.4:37599353-37599372 | None:intergenic | 45.0% | |
| TCTTCCATACACCCCTTATG+TGG | + | chr8.4:37599216-37599235 | MS.gene70988:intron | 45.0% | |
| TGCTCCTACATTATGCTACC+AGG | + | chr8.4:37600894-37600913 | MS.gene70988:CDS | 45.0% | |
| TGGAAGAGTGGTATGGAGAA+GGG | - | chr8.4:37599203-37599222 | None:intergenic | 45.0% | |
| TTGGAAGGAAGGAAGGTCAA+AGG | - | chr8.4:37598978-37598997 | None:intergenic | 45.0% | |
| ! | ATAAGGGGTGTATGGAAGAG+TGG | - | chr8.4:37599215-37599234 | None:intergenic | 45.0% |
| ! | CCCTCTTCATGTGTTGGTAA+TGG | + | chr8.4:37599682-37599701 | MS.gene70988:intron | 45.0% |
| ! | CTGTATTGTGGTGCTTGTTG+CGG | + | chr8.4:37599446-37599465 | MS.gene70988:CDS | 45.0% |
| ! | TGCTTGTTGCGGTGAATAGT+AGG | + | chr8.4:37599457-37599476 | MS.gene70988:CDS | 45.0% |
| ! | TTGTATGGCTCTACGTGGTT+TGG | - | chr8.4:37599115-37599134 | None:intergenic | 45.0% |
| !! | GTGTCATCGTTGCATCGATT+TGG | + | chr8.4:37600974-37600993 | MS.gene70988:intron | 45.0% |
| !!! | GGTTGATTCGATCTGGCTTT+TGG | + | chr8.4:37599631-37599650 | MS.gene70988:intron | 45.0% |
| ACAGTCCTGCATGACTCTGA+CGG | - | chr8.4:37599419-37599438 | None:intergenic | 50.0% | |
| AGAATCGCACCTGCACAGTA+AGG | - | chr8.4:37600413-37600432 | None:intergenic | 50.0% | |
| AGTCCCAGAACTCCCTAAAC+TGG | - | chr8.4:37601723-37601742 | None:intergenic | 50.0% | |
| ATACTCTTGCTCGGCAGAGA+GGG | + | chr8.4:37601671-37601690 | MS.gene70988:CDS | 50.0% | |
| ATTGGCCCCTCTTCATGTGT+TGG | + | chr8.4:37599676-37599695 | MS.gene70988:intron | 50.0% | |
| CAAACTACATCTACCGCAGC+TGG | - | chr8.4:37601326-37601345 | None:intergenic | 50.0% | |
| CAGAGTGAGAGGGAGAAGAA+AGG | - | chr8.4:37599306-37599325 | None:intergenic | 50.0% | |
| CAGCAAGAAGCCAAGAACAG+AGG | - | chr8.4:37600706-37600725 | None:intergenic | 50.0% | |
| CAGCTGCGGTAGATGTAGTT+TGG | + | chr8.4:37601324-37601343 | MS.gene70988:intron | 50.0% | |
| CATACACCCCTTATGTGGCA+TGG | + | chr8.4:37599221-37599240 | MS.gene70988:intron | 50.0% | |
| CTAAGCAGCTGACCAAAAGG+AGG | - | chr8.4:37601253-37601272 | None:intergenic | 50.0% | |
| CTCTGTTCTTGGCTTCTTGC+TGG | + | chr8.4:37600704-37600723 | MS.gene70988:intron | 50.0% | |
| GAAGGAAGGAAGGTCAAAGG+TGG | - | chr8.4:37598975-37598994 | None:intergenic | 50.0% | |
| GGGTGTATGGAAGAGTGGTA+TGG | - | chr8.4:37599210-37599229 | None:intergenic | 50.0% | |
| GGTATGCTTGGAAGGAAGGA+AGG | - | chr8.4:37598985-37599004 | None:intergenic | 50.0% | |
| GTTCTTGGCTTCTTGCTGGA+TGG | + | chr8.4:37600708-37600727 | MS.gene70988:intron | 50.0% | |
| TCAGGGTCAAAACCCAACAG+AGG | - | chr8.4:37601285-37601304 | None:intergenic | 50.0% | |
| TCCTTCCTTCCAAGCATACC+AGG | + | chr8.4:37598985-37599004 | MS.gene70988:intron | 50.0% | |
| ! | CATGCCACATAAGGGGTGTA+TGG | - | chr8.4:37599223-37599242 | None:intergenic | 50.0% |
| ! | GATGCATTTTGTCCCAGCTG+CGG | + | chr8.4:37601310-37601329 | MS.gene70988:CDS | 50.0% |
| AACGACCGGAAGTGAGTGAG+AGG | - | chr8.4:37599329-37599348 | None:intergenic | 55.0% | |
| ACTGTGAGAGTGGGAGGAGA+CGG | - | chr8.4:37599390-37599409 | None:intergenic | 55.0% | |
| CCAAACTAACCTCTCGAGCC+TGG | - | chr8.4:37599006-37599025 | None:intergenic | 55.0% | |
| CTCTGCCTCTCACTCACTTC+CGG | + | chr8.4:37599321-37599340 | MS.gene70988:intron | 55.0% | |
| GAGTGAGAGGCAGAGTGAGA+GGG | - | chr8.4:37599316-37599335 | None:intergenic | 55.0% | |
| GATACTCTTGCTCGGCAGAG+AGG | + | chr8.4:37601670-37601689 | MS.gene70988:CDS | 55.0% | |
| GCCTGGTATGCTTGGAAGGA+AGG | - | chr8.4:37598989-37599008 | None:intergenic | 55.0% | |
| TCGAGCCTGGTATGCTTGGA+AGG | - | chr8.4:37598993-37599012 | None:intergenic | 55.0% | |
| TGAGTGAGAGGCAGAGTGAG+AGG | - | chr8.4:37599317-37599336 | None:intergenic | 55.0% | |
| ! | CCAGGCTCGAGAGGTTAGTT+TGG | + | chr8.4:37599003-37599022 | MS.gene70988:intron | 55.0% |
| ! | GATTCGTGGCCTTACTGTGC+AGG | + | chr8.4:37600401-37600420 | MS.gene70988:intron | 55.0% |
| ACGGAGAGAGTGGGAACGAC+CGG | - | chr8.4:37599343-37599362 | None:intergenic | 60.0% | |
| CCAAGCATACCAGGCTCGAG+AGG | + | chr8.4:37598994-37599013 | MS.gene70988:intron | 60.0% | |
| CCTCCCACTCTCACAGTCGT+CGG | + | chr8.4:37599393-37599412 | MS.gene70988:CDS | 60.0% | |
| CCTCTCGAGCCTGGTATGCT+TGG | - | chr8.4:37598997-37599016 | None:intergenic | 60.0% | |
| CGGCAGAGAGGGATTCAAGG+AGG | + | chr8.4:37601682-37601701 | MS.gene70988:CDS | 60.0% | |
| CTGTGAGAGTGGGAGGAGAC+GGG | - | chr8.4:37599389-37599408 | None:intergenic | 60.0% | |
| GCTCGGCAGAGAGGGATTCA+AGG | + | chr8.4:37601679-37601698 | MS.gene70988:CDS | 60.0% | |
| ACGGCCGACGACTGTGAGAG+TGG | - | chr8.4:37599400-37599419 | None:intergenic | 65.0% | |
| CCGACGACTGTGAGAGTGGG+AGG | - | chr8.4:37599396-37599415 | None:intergenic | 65.0% | |
| CGGCCGACGACTGTGAGAGT+GGG | - | chr8.4:37599399-37599418 | None:intergenic | 65.0% | |
| GTCGGCCGTCAGAGTCATGC+AGG | + | chr8.4:37599411-37599430 | MS.gene70988:CDS | 65.0% | |
| AGAGTGGGAGGAGACGGGCC+AGG | - | chr8.4:37599384-37599403 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 37598915 | 37601795 | 37598915 | ID=MS.gene70988 |
| chr8.4 | mRNA | 37598915 | 37601795 | 37598915 | ID=MS.gene70988.t1;Parent=MS.gene70988 |
| chr8.4 | exon | 37598915 | 37598927 | 37598915 | ID=MS.gene70988.t1.exon1;Parent=MS.gene70988.t1 |
| chr8.4 | CDS | 37598915 | 37598927 | 37598915 | ID=cds.MS.gene70988.t1;Parent=MS.gene70988.t1 |
| chr8.4 | exon | 37599370 | 37599503 | 37599370 | ID=MS.gene70988.t1.exon2;Parent=MS.gene70988.t1 |
| chr8.4 | CDS | 37599370 | 37599503 | 37599370 | ID=cds.MS.gene70988.t1;Parent=MS.gene70988.t1 |
| chr8.4 | exon | 37599757 | 37599824 | 37599757 | ID=MS.gene70988.t1.exon3;Parent=MS.gene70988.t1 |
| chr8.4 | CDS | 37599757 | 37599824 | 37599757 | ID=cds.MS.gene70988.t1;Parent=MS.gene70988.t1 |
| chr8.4 | exon | 37600423 | 37600577 | 37600423 | ID=MS.gene70988.t1.exon4;Parent=MS.gene70988.t1 |
| chr8.4 | CDS | 37600423 | 37600577 | 37600423 | ID=cds.MS.gene70988.t1;Parent=MS.gene70988.t1 |
| chr8.4 | exon | 37600818 | 37600915 | 37600818 | ID=MS.gene70988.t1.exon5;Parent=MS.gene70988.t1 |
| chr8.4 | CDS | 37600818 | 37600915 | 37600818 | ID=cds.MS.gene70988.t1;Parent=MS.gene70988.t1 |
| chr8.4 | exon | 37601223 | 37601331 | 37601223 | ID=MS.gene70988.t1.exon6;Parent=MS.gene70988.t1 |
| chr8.4 | CDS | 37601223 | 37601331 | 37601223 | ID=cds.MS.gene70988.t1;Parent=MS.gene70988.t1 |
| chr8.4 | exon | 37601629 | 37601795 | 37601629 | ID=MS.gene70988.t1.exon7;Parent=MS.gene70988.t1 |
| chr8.4 | CDS | 37601629 | 37601795 | 37601629 | ID=cds.MS.gene70988.t1;Parent=MS.gene70988.t1 |
| Gene Sequence |
| Protein sequence |
