Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71017.t1 | RHN78664.1 | 95 | 404 | 17 | 2 | 1 | 402 | 13 | 415 | 1.10E-166 | 596.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71017.t1 | A0A396JN85 | 95.0 | 404 | 17 | 2 | 1 | 402 | 13 | 415 | 7.7e-167 | 596.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene71017.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053444 | MS.gene71017 | 0.985563 | 5.88E-164 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71017.t1 | MTR_1g044785 | 96.522 | 230 | 6 | 1 | 175 | 402 | 1 | 230 | 1.99e-164 | 460 |
| MS.gene71017.t1 | MTR_1g073350 | 64.371 | 421 | 112 | 13 | 1 | 402 | 13 | 414 | 1.64e-153 | 440 |
| MS.gene71017.t1 | MTR_2g068730 | 62.500 | 64 | 24 | 0 | 287 | 350 | 144 | 207 | 5.58e-22 | 95.1 |
| MS.gene71017.t1 | MTR_8g098725 | 46.847 | 111 | 53 | 2 | 292 | 396 | 211 | 321 | 6.21e-22 | 95.9 |
| MS.gene71017.t1 | MTR_8g098725 | 46.847 | 111 | 53 | 2 | 292 | 396 | 215 | 325 | 7.11e-22 | 95.9 |
| MS.gene71017.t1 | MTR_5g010120 | 51.064 | 94 | 38 | 2 | 279 | 364 | 142 | 235 | 2.20e-20 | 90.1 |
| MS.gene71017.t1 | MTR_4g061823 | 57.812 | 64 | 27 | 0 | 291 | 354 | 130 | 193 | 5.61e-19 | 85.9 |
| MS.gene71017.t1 | MTR_4g061910 | 57.812 | 64 | 27 | 0 | 291 | 354 | 130 | 193 | 5.61e-19 | 85.9 |
| MS.gene71017.t1 | MTR_2g096080 | 56.716 | 67 | 29 | 0 | 284 | 350 | 133 | 199 | 4.11e-18 | 83.6 |
| MS.gene71017.t1 | MTR_1g008220 | 64.583 | 48 | 17 | 0 | 304 | 351 | 230 | 277 | 6.08e-16 | 78.2 |
| MS.gene71017.t1 | MTR_3g091340 | 65.306 | 49 | 17 | 0 | 302 | 350 | 197 | 245 | 2.06e-15 | 75.9 |
| MS.gene71017.t1 | MTR_3g091340 | 65.306 | 49 | 17 | 0 | 302 | 350 | 190 | 238 | 2.10e-15 | 75.9 |
| MS.gene71017.t1 | MTR_3g091340 | 65.306 | 49 | 17 | 0 | 302 | 350 | 226 | 274 | 4.07e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71017.t1 | AT1G04500 | 47.268 | 421 | 154 | 14 | 1 | 402 | 15 | 386 | 1.85e-104 | 314 |
| MS.gene71017.t1 | AT1G04500 | 47.268 | 421 | 154 | 14 | 1 | 402 | 15 | 386 | 1.85e-104 | 314 |
| MS.gene71017.t1 | AT1G04500 | 47.268 | 421 | 154 | 14 | 1 | 402 | 6 | 377 | 2.12e-104 | 313 |
| MS.gene71017.t1 | AT2G33350 | 47.196 | 428 | 165 | 14 | 1 | 402 | 6 | 398 | 9.56e-97 | 295 |
| MS.gene71017.t1 | AT2G33350 | 47.196 | 428 | 165 | 14 | 1 | 402 | 17 | 409 | 1.31e-96 | 295 |
| MS.gene71017.t1 | AT2G33350 | 47.196 | 428 | 165 | 14 | 1 | 402 | 26 | 418 | 4.86e-96 | 293 |
| MS.gene71017.t1 | AT2G33350 | 47.086 | 429 | 165 | 15 | 1 | 402 | 17 | 410 | 9.15e-95 | 290 |
| MS.gene71017.t1 | AT1G04500 | 42.151 | 344 | 133 | 13 | 1 | 327 | 15 | 309 | 5.64e-62 | 204 |
| MS.gene71017.t1 | AT2G33350 | 41.808 | 354 | 140 | 14 | 1 | 327 | 17 | 331 | 1.07e-57 | 192 |
| MS.gene71017.t1 | AT1G63820 | 45.669 | 127 | 58 | 3 | 249 | 368 | 134 | 256 | 2.67e-26 | 107 |
| MS.gene71017.t1 | AT5G41380 | 67.742 | 62 | 20 | 0 | 292 | 353 | 201 | 262 | 2.87e-23 | 99.4 |
| MS.gene71017.t1 | AT3G12890 | 55.172 | 87 | 35 | 1 | 297 | 383 | 130 | 212 | 3.25e-23 | 98.2 |
| MS.gene71017.t1 | AT5G53420 | 65.957 | 47 | 16 | 0 | 304 | 350 | 137 | 183 | 1.82e-15 | 74.7 |
| MS.gene71017.t1 | AT5G53420 | 65.957 | 47 | 16 | 0 | 304 | 350 | 137 | 183 | 1.82e-15 | 74.7 |
| MS.gene71017.t1 | AT5G53420 | 65.957 | 47 | 16 | 0 | 304 | 350 | 137 | 183 | 1.82e-15 | 74.7 |
| MS.gene71017.t1 | AT4G27900 | 62.500 | 48 | 18 | 0 | 304 | 351 | 212 | 259 | 2.28e-15 | 75.9 |
| MS.gene71017.t1 | AT4G27900 | 62.500 | 48 | 18 | 0 | 304 | 351 | 212 | 259 | 2.28e-15 | 75.9 |
| MS.gene71017.t1 | AT5G53420 | 65.957 | 47 | 16 | 0 | 304 | 350 | 216 | 262 | 3.51e-15 | 75.5 |
| MS.gene71017.t1 | AT5G59990 | 42.373 | 118 | 49 | 2 | 281 | 396 | 138 | 238 | 1.63e-14 | 73.2 |
Find 63 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTGAGATATGTTGTTTA+AGG | 0.115598 | 1.4:-29173020 | None:intergenic |
| GGAAAGGTTGTTATTATTAT+TGG | 0.150644 | 1.4:-29173164 | None:intergenic |
| ACACAACCTCATCATCTTTC+TGG | 0.167128 | 1.4:+29173322 | MS.gene71017:CDS |
| TTTGCAAAGAATGATGATTT+TGG | 0.213280 | 1.4:+29174659 | MS.gene71017:CDS |
| GCTGATAGTTCTAGCTTATT+TGG | 0.217917 | 1.4:+29173529 | MS.gene71017:CDS |
| TTACTTCATCTTCATCTTCA+TGG | 0.258336 | 1.4:-29174709 | None:intergenic |
| TTGGATTATCAAGGTGAAAA+TGG | 0.259352 | 1.4:+29173592 | MS.gene71017:CDS |
| TCCTCCAAGTGTGAAATTTC+TGG | 0.285986 | 1.4:-29174387 | None:intergenic |
| TTTGGTGGAGGGATTCTATT+AGG | 0.306595 | 1.4:+29173547 | MS.gene71017:CDS |
| TGAAATGCAGACACAAGATT+TGG | 0.326244 | 1.4:+29173573 | MS.gene71017:CDS |
| TTCTTGTGAATCAAAGATAA+TGG | 0.355504 | 1.4:-29173185 | None:intergenic |
| GATAGCCGACCGCGAGTTAG+AGG | 0.377396 | 1.4:+29174632 | MS.gene71017:CDS |
| TTGTACAGATTCTGTTCAAC+AGG | 0.388571 | 1.4:+29173624 | MS.gene71017:CDS |
| GAGGACTCTTCTTTGAAAGT+TGG | 0.400610 | 1.4:+29174405 | MS.gene71017:CDS |
| ATCATCTTTCTGGTTTGAAC+GGG | 0.407407 | 1.4:+29173332 | MS.gene71017:CDS |
| GAGAATCACAAACTAGTATC+TGG | 0.409472 | 1.4:+29174336 | MS.gene71017:CDS |
| TCTTGTTCTTATCTTAGTAA+TGG | 0.420390 | 1.4:+29173466 | MS.gene71017:CDS |
| CATCATCTTTCTGGTTTGAA+CGG | 0.423925 | 1.4:+29173331 | MS.gene71017:CDS |
| TGTTAAAGAAGAAGATGATA+TGG | 0.428400 | 1.4:+29174953 | MS.gene71017:CDS |
| TTGTTAACATTGTTTGTGGT+AGG | 0.435899 | 1.4:-29173124 | None:intergenic |
| TGTTCTTGATGAGTTGTTAT+CGG | 0.437627 | 1.4:-29173280 | None:intergenic |
| TCTTCATGGTTGCTACTACC+TGG | 0.441983 | 1.4:-29174695 | None:intergenic |
| TCTTATCTTAGTAATGGCTT+AGG | 0.445374 | 1.4:+29173472 | MS.gene71017:CDS |
| ATAGGATCAGTTTGATATTG+TGG | 0.454553 | 1.4:-29173358 | None:intergenic |
| GATAGTTCTAGCTTATTTGG+TGG | 0.459834 | 1.4:+29173532 | MS.gene71017:CDS |
| TGGAAGTTGTTCTGCCACTT+TGG | 0.463869 | 1.4:+29174362 | MS.gene71017:CDS |
| ATCATACCTGAAATTCTTGA+GGG | 0.472005 | 1.4:-29173654 | None:intergenic |
| TCAAACTGATCCTATATCTT+CGG | 0.472302 | 1.4:+29173366 | MS.gene71017:CDS |
| GGTGTGTATCATGGAAATCT+TGG | 0.472409 | 1.4:+29173493 | MS.gene71017:CDS |
| GGCACCAGAAATTTCACACT+TGG | 0.479570 | 1.4:+29174383 | MS.gene71017:CDS |
| AGTTCTAGCTTATTTGGTGG+AGG | 0.485926 | 1.4:+29173535 | MS.gene71017:CDS |
| ACCAGAAATTTCACACTTGG+AGG | 0.486593 | 1.4:+29174386 | MS.gene71017:CDS |
| AGCGGTGCTGCCGAAGATAT+AGG | 0.487136 | 1.4:-29173376 | None:intergenic |
| ACACAAGATTTGGATTATCA+AGG | 0.487381 | 1.4:+29173583 | MS.gene71017:CDS |
| GATGGAATAGTTGCATTTGA+AGG | 0.501927 | 1.4:-29175018 | None:intergenic |
| GAACAAGAAGGAGAATAAGA+AGG | 0.504833 | 1.4:-29173451 | None:intergenic |
| GATGTTGTTAACATTGTTTG+TGG | 0.505534 | 1.4:-29173128 | None:intergenic |
| CACAAACTAGTATCTGGTGC+TGG | 0.507442 | 1.4:+29174342 | MS.gene71017:CDS |
| GAAAACTTTCTGTTGAGCAA+AGG | 0.518365 | 1.4:+29174427 | MS.gene71017:CDS |
| TGTTAACATTGTTTGTGGTA+GGG | 0.519810 | 1.4:-29173123 | None:intergenic |
| TCTAACTCGCGGTCGGCTAT+CGG | 0.529354 | 1.4:-29174630 | None:intergenic |
| GATCATACCTGAAATTCTTG+AGG | 0.529369 | 1.4:-29173655 | None:intergenic |
| GATTATCAAGGTGAAAATGG+TGG | 0.531561 | 1.4:+29173595 | MS.gene71017:CDS |
| GTTCTAGCTTATTTGGTGGA+GGG | 0.546863 | 1.4:+29173536 | MS.gene71017:CDS |
| AATGGCTTAGGTGTGTATCA+TGG | 0.554708 | 1.4:+29173484 | MS.gene71017:CDS |
| TTTGGAGAGAATCATAGGCC+AGG | 0.559627 | 1.4:+29174677 | MS.gene71017:CDS |
| AATTCAAATCAATGAGTGGA+TGG | 0.563218 | 1.4:-29175036 | None:intergenic |
| CAATCATCTTCAAATACAGA+AGG | 0.568846 | 1.4:-29173415 | None:intergenic |
| AAATTTCAGCAAGAAAATCA+AGG | 0.584947 | 1.4:+29174491 | MS.gene71017:CDS |
| GATATCTTTGCACATATCAG+TGG | 0.587582 | 1.4:+29174987 | MS.gene71017:CDS |
| GCCGACCGCGAGTTAGAGGA+AGG | 0.600682 | 1.4:+29174636 | MS.gene71017:CDS |
| CATTAATTCAAATCAATGAG+TGG | 0.603791 | 1.4:-29175040 | None:intergenic |
| TTACTAAGATAAGAACAAGA+AGG | 0.626377 | 1.4:-29173463 | None:intergenic |
| GTGAATCAAAGATAATGGAA+AGG | 0.627025 | 1.4:-29173180 | None:intergenic |
| TGAGTTGTTATCGGAAGAAG+CGG | 0.627559 | 1.4:-29173271 | None:intergenic |
| TGAAATTTCTGGTGCCAAAG+TGG | 0.631400 | 1.4:-29174376 | None:intergenic |
| GCAAACCTTCCTCTAACTCG+CGG | 0.633175 | 1.4:-29174641 | None:intergenic |
| AATCATCTTCAAATACAGAA+GGG | 0.635264 | 1.4:-29173414 | None:intergenic |
| GGGAGTGAAGCACTCATAAG+CGG | 0.643710 | 1.4:-29173394 | None:intergenic |
| TTCAAACCAGAAAGATGATG+AGG | 0.649919 | 1.4:-29173328 | None:intergenic |
| ACCTTCCTCTAACTCGCGGT+CGG | 0.662592 | 1.4:-29174637 | None:intergenic |
| GTTGTTATCGGAAGAAGCGG+CGG | 0.673069 | 1.4:-29173268 | None:intergenic |
| GATATGTGCAAAGATATCTG+AGG | 0.713563 | 1.4:-29174982 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTGTATTTTCTTTTAT+AGG | + | chr1.4:29174302-29174321 | MS.gene71017:intron | 10.0% |
| !!! | ATTAAAAAATACTTTTGATT+TGG | + | chr1.4:29173941-29173960 | MS.gene71017:intron | 10.0% |
| !! | TCTTATTATAGAAGATATTA+TGG | + | chr1.4:29173721-29173740 | MS.gene71017:intron | 15.0% |
| !!! | ATCGTTTTGTTAAATAAATT+TGG | - | chr1.4:29174745-29174764 | None:intergenic | 15.0% |
| !!! | TTTTTATTATCAACTTAAAG+TGG | - | chr1.4:29173985-29174004 | None:intergenic | 15.0% |
| !! | AAATCAAGGAAAATTTAACA+AGG | - | chr1.4:29173702-29173721 | None:intergenic | 20.0% |
| !! | AATTGTTAAAAGATTAGAAG+AGG | + | chr1.4:29173821-29173840 | MS.gene71017:intron | 20.0% |
| !! | ATACCATCAAATAATTGAAA+AGG | - | chr1.4:29174888-29174907 | None:intergenic | 20.0% |
| !! | TCTTCTATAATAAGAAATCA+AGG | - | chr1.4:29173716-29173735 | None:intergenic | 20.0% |
| !! | TTGTTAAATAAATTTGGCTA+GGG | - | chr1.4:29174739-29174758 | None:intergenic | 20.0% |
| !! | TTTGTTAAATAAATTTGGCT+AGG | - | chr1.4:29174740-29174759 | None:intergenic | 20.0% |
| !!! | TCAATTTTTACTTTGTATGT+AGG | - | chr1.4:29173773-29173792 | None:intergenic | 20.0% |
| !!! | TTTCCTTTTCAATTATTTGA+TGG | + | chr1.4:29174882-29174901 | MS.gene71017:intron | 20.0% |
| ! | AAAAAATACTGAAAGTGATG+TGG | - | chr1.4:29174861-29174880 | None:intergenic | 25.0% |
| ! | AAATTTCAGCAAGAAAATCA+AGG | + | chr1.4:29174491-29174510 | MS.gene71017:CDS | 25.0% |
| ! | AATCATCTTCAAATACAGAA+GGG | - | chr1.4:29173417-29173436 | None:intergenic | 25.0% |
| ! | TCAAAAATTTGTGCACTAAT+TGG | - | chr1.4:29172896-29172915 | None:intergenic | 25.0% |
| ! | TCTTGTTCTTATCTTAGTAA+TGG | + | chr1.4:29173466-29173485 | MS.gene71017:CDS | 25.0% |
| ! | TGTTAAAGAAGAAGATGATA+TGG | + | chr1.4:29174953-29174972 | MS.gene71017:CDS | 25.0% |
| ! | TTACTAAGATAAGAACAAGA+AGG | - | chr1.4:29173466-29173485 | None:intergenic | 25.0% |
| ! | TTCTTGTGAATCAAAGATAA+TGG | - | chr1.4:29173188-29173207 | None:intergenic | 25.0% |
| !! | ATTTTTACTTTGTATGTAGG+TGG | - | chr1.4:29173770-29173789 | None:intergenic | 25.0% |
| !! | GGAAAGGTTGTTATTATTAT+TGG | - | chr1.4:29173167-29173186 | None:intergenic | 25.0% |
| !! | TATTTTCTTTTATAGGCACT+TGG | + | chr1.4:29174309-29174328 | MS.gene71017:intron | 25.0% |
| !! | TTTGCAAAGAATGATGATTT+TGG | + | chr1.4:29174659-29174678 | MS.gene71017:CDS | 25.0% |
| ACACAAGATTTGGATTATCA+AGG | + | chr1.4:29173583-29173602 | MS.gene71017:CDS | 30.0% | |
| AGAGAGTCTTGGAAAAAATT+AGG | - | chr1.4:29172929-29172948 | None:intergenic | 30.0% | |
| ATAGGATCAGTTTGATATTG+TGG | - | chr1.4:29173361-29173380 | None:intergenic | 30.0% | |
| ATCATACCTGAAATTCTTGA+GGG | - | chr1.4:29173657-29173676 | None:intergenic | 30.0% | |
| ATCTGCAAGTACAAAATGAA+AGG | - | chr1.4:29174930-29174949 | None:intergenic | 30.0% | |
| ATGTCTAACATCAACATATG+TGG | - | chr1.4:29174213-29174232 | None:intergenic | 30.0% | |
| CAATCATCTTCAAATACAGA+AGG | - | chr1.4:29173418-29173437 | None:intergenic | 30.0% | |
| CATTGAACCAATCATAAAGA+TGG | - | chr1.4:29174046-29174065 | None:intergenic | 30.0% | |
| GAAAAGACCATCTTTATGAT+TGG | + | chr1.4:29174036-29174055 | MS.gene71017:intron | 30.0% | |
| GAGAGTCTTGGAAAAAATTA+GGG | - | chr1.4:29172928-29172947 | None:intergenic | 30.0% | |
| GATGTTGTTAACATTGTTTG+TGG | - | chr1.4:29173131-29173150 | None:intergenic | 30.0% | |
| TCAAACTGATCCTATATCTT+CGG | + | chr1.4:29173366-29173385 | MS.gene71017:CDS | 30.0% | |
| TCTTATCTTAGTAATGGCTT+AGG | + | chr1.4:29173472-29173491 | MS.gene71017:CDS | 30.0% | |
| TGTTAACATTGTTTGTGGTA+GGG | - | chr1.4:29173126-29173145 | None:intergenic | 30.0% | |
| TGTTAGACATTGATACATGT+TGG | + | chr1.4:29174223-29174242 | MS.gene71017:intron | 30.0% | |
| TGTTCTTGATGAGTTGTTAT+CGG | - | chr1.4:29173283-29173302 | None:intergenic | 30.0% | |
| TTACTTCATCTTCATCTTCA+TGG | - | chr1.4:29174712-29174731 | None:intergenic | 30.0% | |
| TTGGATTATCAAGGTGAAAA+TGG | + | chr1.4:29173592-29173611 | MS.gene71017:CDS | 30.0% | |
| TTGTTAACATTGTTTGTGGT+AGG | - | chr1.4:29173127-29173146 | None:intergenic | 30.0% | |
| ! | AGCTTGAGATATGTTGTTTA+AGG | - | chr1.4:29173023-29173042 | None:intergenic | 30.0% |
| ! | TCATTTTACAATTGTTCTCG+AGG | + | chr1.4:29174773-29174792 | MS.gene71017:intron | 30.0% |
| ! | TTTTAACCCTCAAGAATTTC+AGG | + | chr1.4:29173648-29173667 | MS.gene71017:CDS | 30.0% |
| !! | AATTTTGTTGTAGAGAGTCT+TGG | - | chr1.4:29172940-29172959 | None:intergenic | 30.0% |
| !! | ATGATTTTGGAGAGAATCAT+AGG | + | chr1.4:29174672-29174691 | MS.gene71017:CDS | 30.0% |
| !! | CTATATCAGAAGTGTACTTT+TGG | + | chr1.4:29173844-29173863 | MS.gene71017:intron | 30.0% |
| !! | GTGAATCAAAGATAATGGAA+AGG | - | chr1.4:29173183-29173202 | None:intergenic | 30.0% |
| AGTGGTTATTCCTTTCTACT+AGG | - | chr1.4:29173967-29173986 | None:intergenic | 35.0% | |
| AGTTGAACATTTCAGAGTCT+AGG | - | chr1.4:29174815-29174834 | None:intergenic | 35.0% | |
| GAAAACTTTCTGTTGAGCAA+AGG | + | chr1.4:29174427-29174446 | MS.gene71017:CDS | 35.0% | |
| GAACAAGAAGGAGAATAAGA+AGG | - | chr1.4:29173454-29173473 | None:intergenic | 35.0% | |
| GAGAATCACAAACTAGTATC+TGG | + | chr1.4:29174336-29174355 | MS.gene71017:CDS | 35.0% | |
| GATATCTTTGCACATATCAG+TGG | + | chr1.4:29174987-29175006 | MS.gene71017:CDS | 35.0% | |
| GATATGTGCAAAGATATCTG+AGG | - | chr1.4:29174985-29175004 | None:intergenic | 35.0% | |
| GATCATACCTGAAATTCTTG+AGG | - | chr1.4:29173658-29173677 | None:intergenic | 35.0% | |
| GATGGAATAGTTGCATTTGA+AGG | - | chr1.4:29175021-29175040 | None:intergenic | 35.0% | |
| GATTATCAAGGTGAAAATGG+TGG | + | chr1.4:29173595-29173614 | MS.gene71017:CDS | 35.0% | |
| GTTGAACATTTCAGAGTCTA+GGG | - | chr1.4:29174814-29174833 | None:intergenic | 35.0% | |
| TGAAATGCAGACACAAGATT+TGG | + | chr1.4:29173573-29173592 | MS.gene71017:CDS | 35.0% | |
| TTCAAACCAGAAAGATGATG+AGG | - | chr1.4:29173331-29173350 | None:intergenic | 35.0% | |
| TTGTACAGATTCTGTTCAAC+AGG | + | chr1.4:29173624-29173643 | MS.gene71017:CDS | 35.0% | |
| !! | ACGTCATCGATTTGAAGTAT+CGG | + | chr1.4:29174255-29174274 | MS.gene71017:intron | 35.0% |
| !! | ATCATCTTTCTGGTTTGAAC+GGG | + | chr1.4:29173332-29173351 | MS.gene71017:CDS | 35.0% |
| !! | CATCATCTTTCTGGTTTGAA+CGG | + | chr1.4:29173331-29173350 | MS.gene71017:CDS | 35.0% |
| !! | GATAGTTCTAGCTTATTTGG+TGG | + | chr1.4:29173532-29173551 | MS.gene71017:CDS | 35.0% |
| !! | GCTGATAGTTCTAGCTTATT+TGG | + | chr1.4:29173529-29173548 | MS.gene71017:CDS | 35.0% |
| !! | GTACTTTTGGTTAAAGCTCA+TGG | + | chr1.4:29173857-29173876 | MS.gene71017:intron | 35.0% |
| !! | TTTGATTTGGCCTAGTAGAA+AGG | + | chr1.4:29173954-29173973 | MS.gene71017:intron | 35.0% |
| AATGGCTTAGGTGTGTATCA+TGG | + | chr1.4:29173484-29173503 | MS.gene71017:CDS | 40.0% | |
| ACACAACCTCATCATCTTTC+TGG | + | chr1.4:29173322-29173341 | MS.gene71017:CDS | 40.0% | |
| ACCAGAAATTTCACACTTGG+AGG | + | chr1.4:29174386-29174405 | MS.gene71017:CDS | 40.0% | |
| GGTGTGTATCATGGAAATCT+TGG | + | chr1.4:29173493-29173512 | MS.gene71017:CDS | 40.0% | |
| TCCTCCAAGTGTGAAATTTC+TGG | - | chr1.4:29174390-29174409 | None:intergenic | 40.0% | |
| TGAGTTGTTATCGGAAGAAG+CGG | - | chr1.4:29173274-29173293 | None:intergenic | 40.0% | |
| TTTGGTGGAGGGATTCTATT+AGG | + | chr1.4:29173547-29173566 | MS.gene71017:CDS | 40.0% | |
| ! | GAGGACTCTTCTTTGAAAGT+TGG | + | chr1.4:29174405-29174424 | MS.gene71017:CDS | 40.0% |
| !! | AGTTCTAGCTTATTTGGTGG+AGG | + | chr1.4:29173535-29173554 | MS.gene71017:CDS | 40.0% |
| !! | GTTCTAGCTTATTTGGTGGA+GGG | + | chr1.4:29173536-29173555 | MS.gene71017:CDS | 40.0% |
| !! | TGAAATTTCTGGTGCCAAAG+TGG | - | chr1.4:29174379-29174398 | None:intergenic | 40.0% |
| CACAAACTAGTATCTGGTGC+TGG | + | chr1.4:29174342-29174361 | MS.gene71017:CDS | 45.0% | |
| GGCACCAGAAATTTCACACT+TGG | + | chr1.4:29174383-29174402 | MS.gene71017:CDS | 45.0% | |
| TCTTCATGGTTGCTACTACC+TGG | - | chr1.4:29174698-29174717 | None:intergenic | 45.0% | |
| TTTGGAGAGAATCATAGGCC+AGG | + | chr1.4:29174677-29174696 | MS.gene71017:CDS | 45.0% | |
| ! | TGGAAGTTGTTCTGCCACTT+TGG | + | chr1.4:29174362-29174381 | MS.gene71017:CDS | 45.0% |
| GCAAACCTTCCTCTAACTCG+CGG | - | chr1.4:29174644-29174663 | None:intergenic | 50.0% | |
| GTTGTTATCGGAAGAAGCGG+CGG | - | chr1.4:29173271-29173290 | None:intergenic | 50.0% | |
| ! | GGGAGTGAAGCACTCATAAG+CGG | - | chr1.4:29173397-29173416 | None:intergenic | 50.0% |
| ACCTTCCTCTAACTCGCGGT+CGG | - | chr1.4:29174640-29174659 | None:intergenic | 55.0% | |
| TCTAACTCGCGGTCGGCTAT+CGG | - | chr1.4:29174633-29174652 | None:intergenic | 55.0% | |
| !! | AGCGGTGCTGCCGAAGATAT+AGG | - | chr1.4:29173379-29173398 | None:intergenic | 55.0% |
| GATAGCCGACCGCGAGTTAG+AGG | + | chr1.4:29174632-29174651 | MS.gene71017:CDS | 60.0% | |
| GCCGACCGCGAGTTAGAGGA+AGG | + | chr1.4:29174636-29174655 | MS.gene71017:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 29172878 | 29175055 | 29172878 | ID=MS.gene71017 |
| chr1.4 | mRNA | 29172878 | 29175055 | 29172878 | ID=MS.gene71017.t1;Parent=MS.gene71017 |
| chr1.4 | exon | 29172878 | 29173669 | 29172878 | ID=MS.gene71017.t1.exon1;Parent=MS.gene71017.t1 |
| chr1.4 | CDS | 29172878 | 29173669 | 29172878 | ID=cds.MS.gene71017.t1;Parent=MS.gene71017.t1 |
| chr1.4 | exon | 29174324 | 29174512 | 29174324 | ID=MS.gene71017.t1.exon2;Parent=MS.gene71017.t1 |
| chr1.4 | CDS | 29174324 | 29174512 | 29174324 | ID=cds.MS.gene71017.t1;Parent=MS.gene71017.t1 |
| chr1.4 | exon | 29174608 | 29174727 | 29174608 | ID=MS.gene71017.t1.exon3;Parent=MS.gene71017.t1 |
| chr1.4 | CDS | 29174608 | 29174727 | 29174608 | ID=cds.MS.gene71017.t1;Parent=MS.gene71017.t1 |
| chr1.4 | exon | 29174948 | 29175055 | 29174948 | ID=MS.gene71017.t1.exon4;Parent=MS.gene71017.t1 |
| chr1.4 | CDS | 29174948 | 29175055 | 29174948 | ID=cds.MS.gene71017.t1;Parent=MS.gene71017.t1 |
| Gene Sequence |
| Protein sequence |
