Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71022.t1 | XP_003628656.1 | 89 | 355 | 38 | 1 | 1 | 354 | 1 | 355 | 1.20E-161 | 579.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71022.t1 | P42751 | 55.1 | 345 | 135 | 5 | 11 | 353 | 12 | 338 | 5.9e-93 | 342.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71022.t1 | G7LFF3 | 89.0 | 355 | 38 | 1 | 1 | 354 | 1 | 355 | 8.6e-162 | 579.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050338 | MS.gene71022 | 0.809083 | 2.25E-50 | -1.69E-46 |
| MS.gene050707 | MS.gene71022 | 0.804926 | 1.71E-49 | -1.69E-46 |
| MS.gene052129 | MS.gene71022 | 0.801794 | 7.61E-49 | -1.69E-46 |
| MS.gene05926 | MS.gene71022 | 0.801345 | 9.41E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71022.t1 | MTR_8g063120 | 92.113 | 355 | 27 | 1 | 1 | 354 | 1 | 355 | 0.0 | 590 |
| MS.gene71022.t1 | MTR_8g063120 | 89.399 | 283 | 29 | 1 | 1 | 282 | 1 | 283 | 6.47e-170 | 474 |
| MS.gene71022.t1 | MTR_5g035360 | 68.639 | 338 | 90 | 3 | 17 | 353 | 10 | 332 | 3.13e-147 | 419 |
| MS.gene71022.t1 | MTR_4g080990 | 34.311 | 341 | 187 | 6 | 21 | 341 | 11 | 334 | 5.45e-56 | 186 |
| MS.gene71022.t1 | MTR_5g032550 | 40.329 | 243 | 137 | 3 | 55 | 293 | 54 | 292 | 3.86e-54 | 181 |
| MS.gene71022.t1 | MTR_5g032550 | 40.945 | 254 | 135 | 5 | 14 | 257 | 7 | 255 | 1.83e-52 | 175 |
| MS.gene71022.t1 | MTR_3g100710 | 39.271 | 247 | 141 | 3 | 43 | 288 | 53 | 291 | 3.56e-51 | 174 |
| MS.gene71022.t1 | MTR_5g065830 | 34.615 | 234 | 153 | 0 | 60 | 293 | 55 | 288 | 2.39e-46 | 161 |
| MS.gene71022.t1 | MTR_1g107535 | 34.979 | 243 | 155 | 2 | 53 | 293 | 68 | 309 | 8.84e-43 | 152 |
| MS.gene71022.t1 | MTR_3g102310 | 35.714 | 252 | 136 | 6 | 51 | 296 | 59 | 290 | 1.62e-41 | 148 |
| MS.gene71022.t1 | MTR_4g094942 | 39.713 | 209 | 113 | 3 | 92 | 293 | 81 | 283 | 2.97e-41 | 148 |
| MS.gene71022.t1 | MTR_5g015670 | 40.000 | 200 | 115 | 3 | 91 | 289 | 101 | 296 | 6.97e-41 | 147 |
| MS.gene71022.t1 | MTR_2g011500 | 36.082 | 194 | 118 | 3 | 95 | 288 | 86 | 273 | 2.22e-33 | 125 |
| MS.gene71022.t1 | MTR_2g089490 | 32.273 | 220 | 140 | 3 | 74 | 288 | 32 | 247 | 5.23e-33 | 125 |
| MS.gene71022.t1 | MTR_3g100710 | 32.389 | 247 | 129 | 4 | 43 | 288 | 53 | 262 | 1.48e-31 | 121 |
| MS.gene71022.t1 | MTR_2g089490 | 32.273 | 220 | 137 | 4 | 74 | 288 | 32 | 244 | 1.07e-30 | 118 |
| MS.gene71022.t1 | MTR_3g103080 | 43.506 | 154 | 84 | 2 | 55 | 208 | 31 | 181 | 1.21e-30 | 119 |
| MS.gene71022.t1 | MTR_8g068950 | 30.000 | 250 | 156 | 4 | 55 | 288 | 56 | 302 | 3.66e-30 | 119 |
| MS.gene71022.t1 | MTR_4g095790 | 33.600 | 250 | 135 | 7 | 91 | 326 | 66 | 298 | 9.24e-26 | 105 |
| MS.gene71022.t1 | MTR_3g060770 | 28.829 | 222 | 147 | 6 | 71 | 287 | 37 | 252 | 4.73e-18 | 83.6 |
| MS.gene71022.t1 | MTR_3g060410 | 29.126 | 206 | 133 | 5 | 87 | 287 | 130 | 327 | 4.03e-17 | 82.0 |
| MS.gene71022.t1 | MTR_3g061680 | 28.326 | 233 | 152 | 6 | 60 | 285 | 16 | 240 | 9.54e-17 | 79.7 |
| MS.gene71022.t1 | MTR_3g060820 | 27.468 | 233 | 160 | 5 | 59 | 287 | 15 | 242 | 1.57e-16 | 79.0 |
| MS.gene71022.t1 | MTR_3g088405 | 28.302 | 212 | 143 | 6 | 41 | 251 | 229 | 432 | 9.47e-15 | 75.5 |
| MS.gene71022.t1 | MTR_1g011470 | 27.344 | 256 | 161 | 8 | 14 | 265 | 125 | 359 | 9.63e-15 | 75.5 |
| MS.gene71022.t1 | MTR_3g088415 | 31.148 | 183 | 120 | 4 | 70 | 251 | 252 | 429 | 9.68e-15 | 75.5 |
| MS.gene71022.t1 | MTR_3g088415 | 31.148 | 183 | 120 | 4 | 70 | 251 | 252 | 429 | 1.10e-14 | 75.5 |
| MS.gene71022.t1 | MTR_3g060400 | 27.092 | 251 | 168 | 7 | 44 | 287 | 6 | 248 | 1.17e-14 | 73.9 |
| MS.gene71022.t1 | MTR_3g460990 | 27.092 | 251 | 168 | 7 | 44 | 287 | 6 | 248 | 1.17e-14 | 73.9 |
| MS.gene71022.t1 | MTR_5g088980 | 29.016 | 193 | 121 | 6 | 97 | 285 | 201 | 381 | 2.28e-14 | 74.3 |
| MS.gene71022.t1 | MTR_3g102520 | 31.053 | 190 | 117 | 7 | 67 | 251 | 102 | 282 | 3.61e-14 | 73.2 |
| MS.gene71022.t1 | MTR_3g102510 | 29.787 | 188 | 116 | 6 | 70 | 251 | 86 | 263 | 1.39e-13 | 71.2 |
| MS.gene71022.t1 | MTR_3g088415 | 33.088 | 136 | 86 | 3 | 70 | 205 | 252 | 382 | 5.35e-13 | 70.1 |
| MS.gene71022.t1 | MTR_2g081170 | 30.769 | 169 | 106 | 4 | 93 | 253 | 45 | 210 | 2.41e-12 | 68.2 |
| MS.gene71022.t1 | MTR_3g102530 | 29.474 | 190 | 120 | 6 | 67 | 251 | 95 | 275 | 6.93e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71022.t1 | AT1G70210 | 57.391 | 345 | 127 | 5 | 11 | 353 | 12 | 338 | 8.22e-127 | 367 |
| MS.gene71022.t1 | AT2G22490 | 40.000 | 250 | 147 | 2 | 60 | 309 | 64 | 310 | 4.55e-51 | 174 |
| MS.gene71022.t1 | AT2G22490 | 40.400 | 250 | 147 | 1 | 60 | 309 | 64 | 311 | 9.09e-51 | 173 |
| MS.gene71022.t1 | AT5G65420 | 41.204 | 216 | 125 | 2 | 49 | 262 | 33 | 248 | 1.65e-50 | 170 |
| MS.gene71022.t1 | AT5G65420 | 41.204 | 216 | 125 | 2 | 49 | 262 | 33 | 248 | 1.81e-50 | 171 |
| MS.gene71022.t1 | AT5G65420 | 39.381 | 226 | 125 | 3 | 49 | 262 | 33 | 258 | 2.52e-48 | 166 |
| MS.gene71022.t1 | AT5G10440 | 36.015 | 261 | 157 | 3 | 55 | 314 | 31 | 282 | 1.76e-46 | 160 |
| MS.gene71022.t1 | AT3G50070 | 44.041 | 193 | 108 | 0 | 93 | 285 | 86 | 278 | 7.25e-46 | 160 |
| MS.gene71022.t1 | AT4G34160 | 40.306 | 196 | 117 | 0 | 93 | 288 | 87 | 282 | 1.37e-45 | 160 |
| MS.gene71022.t1 | AT5G65420 | 40.816 | 196 | 110 | 3 | 49 | 238 | 33 | 228 | 1.01e-41 | 146 |
| MS.gene71022.t1 | AT5G67260 | 40.404 | 198 | 118 | 0 | 90 | 287 | 93 | 290 | 4.79e-41 | 148 |
| MS.gene71022.t1 | AT5G67260 | 40.404 | 198 | 118 | 0 | 90 | 287 | 93 | 290 | 1.60e-40 | 147 |
| MS.gene71022.t1 | AT5G10440 | 41.011 | 178 | 104 | 1 | 55 | 231 | 31 | 208 | 3.14e-40 | 141 |
| MS.gene71022.t1 | AT4G03270 | 34.866 | 261 | 157 | 6 | 70 | 321 | 35 | 291 | 3.98e-38 | 138 |
| MS.gene71022.t1 | AT4G03270 | 34.866 | 261 | 156 | 7 | 70 | 321 | 35 | 290 | 3.52e-36 | 133 |
| MS.gene71022.t1 | AT4G37630 | 32.016 | 253 | 157 | 5 | 85 | 323 | 64 | 315 | 1.04e-33 | 127 |
| MS.gene71022.t1 | AT4G37630 | 37.059 | 170 | 101 | 3 | 82 | 246 | 58 | 226 | 3.07e-33 | 124 |
| MS.gene71022.t1 | AT4G37630 | 37.209 | 172 | 100 | 4 | 82 | 246 | 58 | 228 | 5.92e-32 | 121 |
| MS.gene71022.t1 | AT5G02110 | 30.568 | 229 | 148 | 5 | 60 | 286 | 45 | 264 | 7.08e-22 | 95.5 |
| MS.gene71022.t1 | AT1G77390 | 36.126 | 191 | 100 | 7 | 70 | 251 | 190 | 367 | 1.66e-17 | 83.6 |
| MS.gene71022.t1 | AT4G37490 | 28.718 | 195 | 118 | 6 | 97 | 285 | 201 | 380 | 4.12e-17 | 82.4 |
| MS.gene71022.t1 | AT5G02110 | 30.244 | 205 | 129 | 5 | 88 | 286 | 39 | 235 | 6.43e-16 | 77.8 |
| MS.gene71022.t1 | AT5G11300 | 30.242 | 248 | 147 | 11 | 41 | 282 | 158 | 385 | 3.41e-15 | 76.6 |
| MS.gene71022.t1 | AT5G11300 | 30.131 | 229 | 140 | 8 | 41 | 265 | 158 | 370 | 6.87e-15 | 75.9 |
| MS.gene71022.t1 | AT1G44110 | 30.734 | 218 | 130 | 7 | 41 | 251 | 180 | 383 | 5.50e-14 | 73.2 |
| MS.gene71022.t1 | AT5G43080 | 32.240 | 183 | 113 | 6 | 70 | 251 | 99 | 271 | 8.03e-14 | 72.0 |
| MS.gene71022.t1 | AT5G25380 | 28.049 | 246 | 155 | 8 | 26 | 265 | 148 | 377 | 1.15e-13 | 72.0 |
| MS.gene71022.t1 | AT3G11520 | 29.437 | 231 | 135 | 9 | 88 | 309 | 186 | 397 | 1.64e-13 | 71.6 |
| MS.gene71022.t1 | AT3G11520 | 30.387 | 181 | 103 | 6 | 88 | 259 | 186 | 352 | 2.35e-12 | 67.8 |
Find 0 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGGAATAAATAAAATTA+AGG | + | 57482:19508-19527 | MS.gene71022:intron | 10.0% |
| !! | AAAGGAATAAATAAAATTAA+GGG | + | 57482:19509-19528 | MS.gene71022:intron | 10.0% |
| !! | AAGTTAATTTAAGTAATAAA+TGG | - | 57482:21154-21173 | None:intergenic | 10.0% |
| !!! | AATAATTGACAAATTTTAAT+TGG | + | 57482:20680-20699 | MS.gene71022:intron | 10.0% |
| !!! | ATTATGACATATTTAATTTT+AGG | - | 57482:19715-19734 | None:intergenic | 10.0% |
| !!! | TAATAATTTTAAAACTATGA+TGG | + | 57482:21522-21541 | MS.gene71022:intron | 10.0% |
| !!! | TTATGACATATTTAATTTTA+GGG | - | 57482:19714-19733 | None:intergenic | 10.0% |
| !!! | TTGAAATCATTTTTTTTTTA+AGG | + | 57482:20109-20128 | MS.gene71022:intron | 10.0% |
| !! | ATCATTACTCTAATAATAAA+TGG | + | 57482:20370-20389 | MS.gene71022:intron | 15.0% |
| !! | GAACAATAGTATTAAAAAAA+AGG | + | 57482:20612-20631 | MS.gene71022:intron | 15.0% |
| !! | TAATAATAAATGGTATACAT+AGG | + | 57482:20380-20399 | MS.gene71022:intron | 15.0% |
| !! | ATAAAATGCACAAAATTTGA+AGG | - | 57482:19591-19610 | None:intergenic | 20.0% |
| !! | ATTATCTTATCTAATATCCA+AGG | + | 57482:21451-21470 | MS.gene71022:CDS | 20.0% |
| !! | CAACAAAAAATTACTATGTT+GGG | + | 57482:19650-19669 | MS.gene71022:intron | 20.0% |
| !! | CTAGCATTAAAAGAAATTAA+GGG | - | 57482:21487-21506 | None:intergenic | 20.0% |
| !! | GTACTAGTAGTATTTAAATT+TGG | + | 57482:19887-19906 | MS.gene71022:intron | 20.0% |
| !! | GTTAATTTATTGAACAACTA+TGG | + | 57482:20572-20591 | MS.gene71022:intron | 20.0% |
| !! | TATTGCAGGAAAAAATTATA+GGG | + | 57482:21859-21878 | MS.gene71022:intron | 20.0% |
| !! | TCTAGCATTAAAAGAAATTA+AGG | - | 57482:21488-21507 | None:intergenic | 20.0% |
| !! | TTATTGCAGGAAAAAATTAT+AGG | + | 57482:21858-21877 | MS.gene71022:intron | 20.0% |
| !! | TTTATGCTAAAATGAGTTAA+CGG | + | 57482:19151-19170 | MS.gene71022:intron | 20.0% |
| !!! | GATAAATCATTTTGTTTTCT+CGG | + | 57482:19395-19414 | MS.gene71022:intron | 20.0% |
| !!! | TAATGGATATTATAAACTGT+AGG | + | 57482:21249-21268 | MS.gene71022:intron | 20.0% |
| !!! | TTTTGTTTATATTGAAAACG+TGG | - | 57482:19863-19882 | None:intergenic | 20.0% |
| ! | AATTACATTACCATGTTAAC+AGG | + | 57482:21026-21045 | MS.gene71022:intron | 25.0% |
| ! | AGTCATTTGTAAGATTGTAA+TGG | + | 57482:21232-21251 | MS.gene71022:intron | 25.0% |
| ! | ATAATAATTGTGATACCGAA+GGG | - | 57482:19753-19772 | None:intergenic | 25.0% |
| ! | ATAGTACTATAGTAGTATAC+GGG | + | 57482:21773-21792 | MS.gene71022:intron | 25.0% |
| ! | ATCACCATAATATAGTTGTT+GGG | - | 57482:21003-21022 | None:intergenic | 25.0% |
| ! | CATAGTACTATAGTAGTATA+CGG | + | 57482:21772-21791 | MS.gene71022:intron | 25.0% |
| ! | CCAACAAAAAATTACTATGT+TGG | + | 57482:19649-19668 | MS.gene71022:intron | 25.0% |
| ! | TAGAAAATGATGAAAAACCT+TGG | - | 57482:19777-19796 | None:intergenic | 25.0% |
| ! | TTAAGGGTAAAATAATACCT+TGG | - | 57482:21471-21490 | None:intergenic | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | - | 57482:20299-20318 | None:intergenic | 25.0% |
| ! | TTTATATTGAAAACGTGGAA+GGG | - | 57482:19858-19877 | None:intergenic | 25.0% |
| !! | TATTATAAACTGTAGGTTGA+AGG | + | 57482:21256-21275 | MS.gene71022:intron | 25.0% |
| !!! | ACTGTGATGTTTATTTTTAC+AGG | + | 57482:19238-19257 | MS.gene71022:intron | 25.0% |
| !!! | ATTTTCAAAAGTATCATTCG+TGG | - | 57482:20032-20051 | None:intergenic | 25.0% |
| !!! | CATTTTAGCATAAAGTAGTT+CGG | - | 57482:19145-19164 | None:intergenic | 25.0% |
| !!! | CCAACATAGTAATTTTTTGT+TGG | - | 57482:19652-19671 | None:intergenic | 25.0% |
| !!! | GAAATTAAATAGCTGTTTCT+GGG | + | 57482:22055-22074 | MS.gene71022:CDS | 25.0% |
| !!! | GAAGGAATATTTCTACTTTT+AGG | - | 57482:19573-19592 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | - | 57482:20312-20331 | None:intergenic | 25.0% |
| AAAACAATGGAGAGAGAAAA+AGG | - | 57482:20286-20305 | None:intergenic | 30.0% | |
| AAACCGATCCATATAGTTAA+CGG | - | 57482:19306-19325 | None:intergenic | 30.0% | |
| ACATGCAGAATAATGAACAA+AGG | - | 57482:21189-21208 | None:intergenic | 30.0% | |
| ATATTCGAGAAAATGAGTGA+TGG | + | 57482:19446-19465 | MS.gene71022:intron | 30.0% | |
| ATCCAAAAGTTGTCAAAAAG+TGG | - | 57482:20222-20241 | None:intergenic | 30.0% | |
| ATGTCACGTGAGTATATTTA+TGG | + | 57482:20504-20523 | MS.gene71022:intron | 30.0% | |
| ATTGCCCAACAACTATATTA+TGG | + | 57482:20996-21015 | MS.gene71022:intron | 30.0% | |
| CAGCTAATGAAATTCCTAAT+TGG | + | 57482:21671-21690 | MS.gene71022:CDS | 30.0% | |
| CATAATAATTGTGATACCGA+AGG | - | 57482:19754-19773 | None:intergenic | 30.0% | |
| CATCACCATAATATAGTTGT+TGG | - | 57482:21004-21023 | None:intergenic | 30.0% | |
| GTATCACAATTATTATGCCA+AGG | + | 57482:19757-19776 | MS.gene71022:intron | 30.0% | |
| GTGTATATAGTATTACACCT+AGG | - | 57482:20152-20171 | None:intergenic | 30.0% | |
| GTTTATATTGAAAACGTGGA+AGG | - | 57482:19859-19878 | None:intergenic | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | + | 57482:20337-20356 | MS.gene71022:intron | 30.0% | |
| TCTCGTTGTCATATAAAAAG+AGG | + | 57482:22033-22052 | MS.gene71022:CDS | 30.0% | |
| TTACTTATCTTGTACCCTAA+GGG | - | 57482:19550-19569 | None:intergenic | 30.0% | |
| TTATATGACAACGAGAAAGA+GGG | - | 57482:22029-22048 | None:intergenic | 30.0% | |
| TTCCTTATCTTGTGTCTTAA+GGG | + | 57482:19673-19692 | MS.gene71022:intron | 30.0% | |
| TTTATATGACAACGAGAAAG+AGG | - | 57482:22030-22049 | None:intergenic | 30.0% | |
| ! | ATCTCTATTGTGAGTTTTCA+AGG | + | 57482:21558-21577 | MS.gene71022:intron | 30.0% |
| ! | CTTTTTATGATAAGTGTTCG+AGG | + | 57482:20072-20091 | MS.gene71022:intron | 30.0% |
| ! | GGAAATTAAATAGCTGTTTC+TGG | + | 57482:22054-22073 | MS.gene71022:CDS | 30.0% |
| !! | TATGGAAAATGCTATTTCTC+TGG | + | 57482:20590-20609 | MS.gene71022:intron | 30.0% |
| !! | TTGTTCTGACTATTTTGGAT+TGG | + | 57482:21326-21345 | MS.gene71022:CDS | 30.0% |
| !!! | AACCACTTTTTGACAACTTT+TGG | + | 57482:20217-20236 | MS.gene71022:intron | 30.0% |
| AAGAAACTGAGGAAACTAAG+TGG | - | 57482:21370-21389 | None:intergenic | 35.0% | |
| AGAAACTGAGGAAACTAAGT+GGG | - | 57482:21369-21388 | None:intergenic | 35.0% | |
| CAAAATGTGTACAAGTACCT+AGG | + | 57482:20132-20151 | MS.gene71022:intron | 35.0% | |
| CCATGTTAACAGGAATCAAA+TGG | + | 57482:21036-21055 | MS.gene71022:intron | 35.0% | |
| CCATTTGATTCCTGTTAACA+TGG | - | 57482:21039-21058 | None:intergenic | 35.0% | |
| CGAAATACATATTTCAACCG+AGG | + | 57482:21281-21300 | MS.gene71022:CDS | 35.0% | |
| GTTAACAGGAATCAAATGGA+TGG | + | 57482:21040-21059 | MS.gene71022:intron | 35.0% | |
| GTTACTTATCTTGTACCCTA+AGG | - | 57482:19551-19570 | None:intergenic | 35.0% | |
| GTTCCTTATCTTGTGTCTTA+AGG | + | 57482:19672-19691 | MS.gene71022:intron | 35.0% | |
| GTTTGAAAATAAGAGCTCAC+CGG | - | 57482:19347-19366 | None:intergenic | 35.0% | |
| TACCACTATCTGTTTATTGC+AGG | + | 57482:21845-21864 | MS.gene71022:intron | 35.0% | |
| TATTTCAACTCATGACCCTT+CGG | + | 57482:19735-19754 | MS.gene71022:intron | 35.0% | |
| TCATTCGTGGAATTTGTCAA+TGG | - | 57482:20019-20038 | None:intergenic | 35.0% | |
| TCTCCGTTAACTATATGGAT+CGG | + | 57482:19300-19319 | MS.gene71022:CDS | 35.0% | |
| TTACAGGTGCATGAATACTA+TGG | + | 57482:19254-19273 | MS.gene71022:intron | 35.0% | |
| TTCATTAGCTGCAGAGATTA+TGG | - | 57482:21662-21681 | None:intergenic | 35.0% | |
| TTCCTGCAATAAACAGATAG+TGG | - | 57482:21850-21869 | None:intergenic | 35.0% | |
| TTTCTGTAGCACGTGAAATT+AGG | - | 57482:21432-21451 | None:intergenic | 35.0% | |
| TTTGTCTTTAGCAGCAAAGA+TGG | + | 57482:21089-21108 | MS.gene71022:CDS | 35.0% | |
| ! | GGATTAGCAAAAGACCAATT+AGG | - | 57482:21688-21707 | None:intergenic | 35.0% |
| !! | CATGTTAACTTGTTCCCTTA+GGG | + | 57482:19533-19552 | MS.gene71022:intron | 35.0% |
| !! | TCATGTTAACTTGTTCCCTT+AGG | + | 57482:19532-19551 | MS.gene71022:intron | 35.0% |
| !! | TTCTGACTATTTTGGATTGG+AGG | + | 57482:21329-21348 | MS.gene71022:CDS | 35.0% |
| AAATAAGAGCTCACCGGTAA+AGG | - | 57482:19341-19360 | None:intergenic | 40.0% | |
| CTATGGATTTCAGCCGTTAA+CGG | + | 57482:19271-19290 | MS.gene71022:CDS | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | - | 57482:20742-20761 | None:intergenic | 40.0% | |
| GAAACTGAGGAAACTAAGTG+GGG | - | 57482:21368-21387 | None:intergenic | 40.0% | |
| GATCCATATAGTTAACGGAG+AGG | - | 57482:19301-19320 | None:intergenic | 40.0% | |
| GCAACAGATAAAAGTTGCAG+TGG | - | 57482:21066-21085 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | - | 57482:20745-20764 | None:intergenic | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | + | 57482:20753-20772 | MS.gene71022:intron | 40.0% | |
| GTACCTCTCCGTTAACTATA+TGG | + | 57482:19295-19314 | MS.gene71022:CDS | 40.0% | |
| TACCTTGAGAATCCATGCAA+TGG | - | 57482:19088-19107 | None:intergenic | 40.0% | |
| TATACGTGTAGAGCAATGCT+AGG | + | 57482:20417-20436 | MS.gene71022:intron | 40.0% | |
| TGACATTCGTGTGGAAAAGA+GGG | - | 57482:20490-20509 | None:intergenic | 40.0% | |
| TGCCCTTAAGACACAAGATA+AGG | - | 57482:19678-19697 | None:intergenic | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | - | 57482:20719-20738 | None:intergenic | 40.0% | |
| TTCTGGGTAGATGATGACAA+AGG | + | 57482:22071-22090 | MS.gene71022:CDS | 40.0% | |
| TTTGCATTCACGACCTTTAC+CGG | + | 57482:19325-19344 | MS.gene71022:CDS | 40.0% | |
| ! | CTTTTGACACTTCCAATACG+AGG | + | 57482:19479-19498 | MS.gene71022:intron | 40.0% |
| ! | GCTGCTTGTTCTGACTATTT+TGG | + | 57482:21321-21340 | MS.gene71022:CDS | 40.0% |
| ! | TCCATTCTAAGAATCGTCCT+CGG | - | 57482:21301-21320 | None:intergenic | 40.0% |
| ! | TGATGATGATGAATCGAGGT+CGG | - | 57482:18920-18939 | None:intergenic | 40.0% |
| !! | ACACTTTAGGGGCATTTCTT+TGG | - | 57482:21923-21942 | None:intergenic | 40.0% |
| AACAATGACGACAACGGCAA+CGG | - | 57482:18943-18962 | None:intergenic | 45.0% | |
| AATGGCTTCTTCTCTGGCAT+TGG | - | 57482:19070-19089 | None:intergenic | 45.0% | |
| ACCGAGGACGATTCTTAGAA+TGG | + | 57482:21297-21316 | MS.gene71022:CDS | 45.0% | |
| ACCTGAAAGTCCAAGAGAGA+AGG | - | 57482:21129-21148 | None:intergenic | 45.0% | |
| AGCAAGAAAGCTAGCATCTG+CGG | - | 57482:21611-21630 | None:intergenic | 45.0% | |
| AGCCATTGCATGGATTCTCA+AGG | + | 57482:19083-19102 | MS.gene71022:CDS | 45.0% | |
| ATACTCACGTGACATTCGTG+TGG | - | 57482:20499-20518 | None:intergenic | 45.0% | |
| CAACTGTGGCAACACTTTAG+GGG | - | 57482:21934-21953 | None:intergenic | 45.0% | |
| CTATTTGCCACAATTCGAGG+AGG | - | 57482:20911-20930 | None:intergenic | 45.0% | |
| CTTGAGACGTATTCGTAACC+AGG | - | 57482:19024-19043 | None:intergenic | 45.0% | |
| GCAACTGTGGCAACACTTTA+GGG | - | 57482:21935-21954 | None:intergenic | 45.0% | |
| GCACTATTTGCCACAATTCG+AGG | - | 57482:20914-20933 | None:intergenic | 45.0% | |
| GTCTTTAGCAGCAAAGATGG+AGG | + | 57482:21092-21111 | MS.gene71022:CDS | 45.0% | |
| GTGACATTCGTGTGGAAAAG+AGG | - | 57482:20491-20510 | None:intergenic | 45.0% | |
| TCAGCGAACAATGACGACAA+CGG | - | 57482:18949-18968 | None:intergenic | 45.0% | |
| TCCTTCTCTCTTGGACTTTC+AGG | + | 57482:21125-21144 | MS.gene71022:CDS | 45.0% | |
| ! | ACGGTGATGATGATGAATCG+AGG | - | 57482:18924-18943 | None:intergenic | 45.0% |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | - | 57482:20725-20744 | None:intergenic | 45.0% |
| !! | TTAACGGCGTCGATGAATCA+TGG | + | 57482:19167-19186 | MS.gene71022:intron | 45.0% |
| AGCCACACCTCCTTGAATTG+TGG | + | 57482:20732-20751 | MS.gene71022:intron | 50.0% | |
| AGCCATACCTCCTCGAATTG+TGG | + | 57482:20901-20920 | MS.gene71022:intron | 50.0% | |
| AGTCCAAGAGAGAAGGAACC+AGG | - | 57482:21122-21141 | None:intergenic | 50.0% | |
| ATCCTGAGCATGCTGAGTCA+TGG | + | 57482:21704-21723 | MS.gene71022:CDS | 50.0% | |
| CAACGAGAAAGAGGGTGAAG+AGG | - | 57482:22021-22040 | None:intergenic | 50.0% | |
| CACAGTTGCGAGTTACAGCT+CGG | + | 57482:21946-21965 | MS.gene71022:CDS | 50.0% | |
| CATGCTGAGTCATGGTGTGA+AGG | + | 57482:21712-21731 | MS.gene71022:CDS | 50.0% | |
| CCAATACGAGGCGCATGAAA+AGG | + | 57482:19491-19510 | MS.gene71022:intron | 50.0% | |
| CCAGAGAAGAAGCCATTGCA+TGG | + | 57482:19073-19092 | MS.gene71022:CDS | 50.0% | |
| CCATGCAATGGCTTCTTCTC+TGG | - | 57482:19076-19095 | None:intergenic | 50.0% | |
| CGCAACTGTGGCAACACTTT+AGG | - | 57482:21936-21955 | None:intergenic | 50.0% | |
| GACAGTGGCATGAGAATCAC+CGG | - | 57482:18820-18839 | None:intergenic | 50.0% | |
| GACTCATCAGAAGTCCTCAC+CGG | + | 57482:18874-18893 | MS.gene71022:CDS | 50.0% | |
| GCGTGCAAGCTAGATTCAAC+TGG | + | 57482:21391-21410 | MS.gene71022:CDS | 50.0% | |
| GCTTGCACGCAAAGAAACTG+AGG | - | 57482:21381-21400 | None:intergenic | 50.0% | |
| GTCATTGTTCGCTGAGGAAG+AGG | + | 57482:18954-18973 | MS.gene71022:CDS | 50.0% | |
| GTCCAAGAGAGAAGGAACCA+GGG | - | 57482:21121-21140 | None:intergenic | 50.0% | |
| GTTGTCGTCATTGTTCGCTG+AGG | + | 57482:18948-18967 | MS.gene71022:CDS | 50.0% | |
| TCCAAGAGAGAAGGAACCAG+GGG | - | 57482:21120-21139 | None:intergenic | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | - | 57482:20737-20756 | None:intergenic | 50.0% | |
| TGCCACAATTCGAGGAGGTA+TGG | - | 57482:20906-20925 | None:intergenic | 50.0% | |
| ! | CACGAGTTCAAGTTCGTTCC+TGG | + | 57482:19003-19022 | MS.gene71022:CDS | 50.0% |
| ! | CCTTTTCATGCGCCTCGTAT+TGG | - | 57482:19494-19513 | None:intergenic | 50.0% |
| ACCCCTGGTTCCTTCTCTCT+TGG | + | 57482:21116-21135 | MS.gene71022:CDS | 55.0% | |
| AGCAAAGATGGAGGAACCCC+TGG | + | 57482:21101-21120 | MS.gene71022:CDS | 55.0% | |
| AGTCCTCACCGGAGATTCAC+CGG | + | 57482:18885-18904 | MS.gene71022:CDS | 55.0% | |
| ATTCCGGTGAATCTCCGGTG+AGG | - | 57482:18891-18910 | None:intergenic | 55.0% | |
| CACCATGACTCAGCATGCTC+AGG | - | 57482:21709-21728 | None:intergenic | 55.0% | |
| CGAGAAAGAGGGTGAAGAGG+AGG | - | 57482:22018-22037 | None:intergenic | 55.0% | |
| CGAGCTGTAACTCGCAACTG+TGG | - | 57482:21948-21967 | None:intergenic | 55.0% | |
| GAAAGAGGGTGAAGAGGAGG+AGG | - | 57482:22015-22034 | None:intergenic | 55.0% | |
| GAGTTACAGCTCGGACCAGA+AGG | + | 57482:21955-21974 | MS.gene71022:CDS | 55.0% | |
| GCAGCATTCCGGTGAATCTC+CGG | - | 57482:18896-18915 | None:intergenic | 55.0% | |
| GCAGCTGCAGCAATGCATGA+TGG | - | 57482:21640-21659 | None:intergenic | 55.0% | |
| TGGCTTCGAGAGAGCGAGAT+TGG | - | 57482:19050-19069 | None:intergenic | 55.0% | |
| TTACAGCTCGGACCAGAAGG+TGG | + | 57482:21958-21977 | MS.gene71022:CDS | 55.0% | |
| ! | ACGGAGAGGTACGCCGTTAA+CGG | - | 57482:19287-19306 | None:intergenic | 55.0% |
| ! | TGATGACGACGACGAGACAC+TGG | - | 57482:21985-22004 | None:intergenic | 55.0% |
| CGAGACACTGGACCACCTTC+TGG | - | 57482:21973-21992 | None:intergenic | 60.0% | |
| GAGGGTGAAGAGGAGGAGGA+TGG | - | 57482:22011-22030 | None:intergenic | 60.0% | |
| TCCAACTGCGAGCTCCTCTG+CGG | + | 57482:18847-18866 | MS.gene71022:CDS | 60.0% | |
| TCGAGGTCGGAGCAGCATTC+CGG | - | 57482:18907-18926 | None:intergenic | 60.0% | |
| !! | CAGTTGGAGGTGCTCGACAG+TGG | - | 57482:18835-18854 | None:intergenic | 60.0% |
| CTGATGAGTCCTCGCCGCAG+AGG | - | 57482:18864-18883 | None:intergenic | 65.0% | |
| GCAGAGGAGCTCGCAGTTGG+AGG | - | 57482:18848-18867 | None:intergenic | 65.0% | |
| GCCGCAGAGGAGCTCGCAGT+TGG | - | 57482:18851-18870 | None:intergenic | 70.0% | |
| CTGCGAGCTCCTCTGCGGCG+AGG | + | 57482:18852-18871 | MS.gene71022:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57482 | gene | 18799 | 22106 | 18799 | ID=MS.gene71022 |
| 57482 | mRNA | 18799 | 22106 | 18799 | ID=MS.gene71022.t1;Parent=MS.gene71022 |
| 57482 | exon | 18799 | 19104 | 18799 | ID=MS.gene71022.t1.exon1;Parent=MS.gene71022.t1 |
| 57482 | CDS | 18799 | 19104 | 18799 | ID=cds.MS.gene71022.t1;Parent=MS.gene71022.t1 |
| 57482 | exon | 19260 | 19346 | 19260 | ID=MS.gene71022.t1.exon2;Parent=MS.gene71022.t1 |
| 57482 | CDS | 19260 | 19346 | 19260 | ID=cds.MS.gene71022.t1;Parent=MS.gene71022.t1 |
| 57482 | exon | 21048 | 21146 | 21048 | ID=MS.gene71022.t1.exon3;Parent=MS.gene71022.t1 |
| 57482 | CDS | 21048 | 21146 | 21048 | ID=cds.MS.gene71022.t1;Parent=MS.gene71022.t1 |
| 57482 | exon | 21271 | 21472 | 21271 | ID=MS.gene71022.t1.exon4;Parent=MS.gene71022.t1 |
| 57482 | CDS | 21271 | 21472 | 21271 | ID=cds.MS.gene71022.t1;Parent=MS.gene71022.t1 |
| 57482 | exon | 21614 | 21744 | 21614 | ID=MS.gene71022.t1.exon5;Parent=MS.gene71022.t1 |
| 57482 | CDS | 21614 | 21744 | 21614 | ID=cds.MS.gene71022.t1;Parent=MS.gene71022.t1 |
| 57482 | exon | 21867 | 22106 | 21867 | ID=MS.gene71022.t1.exon6;Parent=MS.gene71022.t1 |
| 57482 | CDS | 21867 | 22106 | 21867 | ID=cds.MS.gene71022.t1;Parent=MS.gene71022.t1 |
| Gene Sequence |
| Protein sequence |
