Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71128.t1 | XP_013451911.1 | 59.3 | 514 | 47 | 2 | 1 | 352 | 72 | 585 | 1.70E-144 | 522.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71128.t1 | Q54I39 | 33.3 | 108 | 70 | 2 | 5 | 112 | 72 | 177 | 8.1e-10 | 66.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71128.t1 | A0A072U868 | 59.3 | 514 | 47 | 2 | 1 | 352 | 72 | 585 | 1.2e-144 | 522.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene71128 | -0.808494 | 3.01E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71128.t1 | MTR_6g038150 | 76.415 | 318 | 21 | 2 | 1 | 264 | 72 | 389 | 7.78e-153 | 442 |
| MS.gene71128.t1 | MTR_6g038150 | 96.591 | 88 | 3 | 0 | 265 | 352 | 498 | 585 | 8.49e-51 | 178 |
| MS.gene71128.t1 | MTR_1g110690 | 63.281 | 128 | 47 | 0 | 2 | 129 | 73 | 200 | 4.96e-49 | 167 |
| MS.gene71128.t1 | MTR_8g074540 | 52.349 | 149 | 67 | 1 | 1 | 145 | 12 | 160 | 1.35e-48 | 167 |
| MS.gene71128.t1 | MTR_8g074540 | 52.349 | 149 | 67 | 1 | 1 | 145 | 86 | 234 | 1.06e-47 | 167 |
| MS.gene71128.t1 | MTR_6g091690 | 52.713 | 129 | 61 | 0 | 1 | 129 | 1 | 129 | 8.22e-44 | 162 |
| MS.gene71128.t1 | MTR_6g091690 | 52.713 | 129 | 61 | 0 | 1 | 129 | 66 | 194 | 1.88e-43 | 160 |
| MS.gene71128.t1 | MTR_4g081350 | 44.737 | 114 | 62 | 1 | 1 | 114 | 66 | 178 | 1.23e-26 | 109 |
| MS.gene71128.t1 | MTR_4g081350 | 44.737 | 114 | 62 | 1 | 1 | 114 | 66 | 178 | 1.26e-26 | 109 |
| MS.gene71128.t1 | MTR_7g096450 | 35.398 | 113 | 73 | 0 | 25 | 137 | 4 | 116 | 7.42e-19 | 84.0 |
| MS.gene71128.t1 | MTR_1g111210 | 40.385 | 104 | 62 | 0 | 7 | 110 | 80 | 183 | 1.11e-18 | 86.7 |
| MS.gene71128.t1 | MTR_7g098540 | 37.500 | 112 | 66 | 1 | 6 | 117 | 81 | 188 | 2.16e-18 | 82.8 |
| MS.gene71128.t1 | MTR_7g407010 | 35.514 | 107 | 69 | 0 | 1 | 107 | 67 | 173 | 2.65e-18 | 85.9 |
| MS.gene71128.t1 | MTR_2g090230 | 40.385 | 104 | 62 | 0 | 2 | 105 | 19 | 122 | 9.68e-18 | 84.7 |
| MS.gene71128.t1 | MTR_2g090230 | 40.385 | 104 | 62 | 0 | 2 | 105 | 59 | 162 | 1.85e-17 | 84.0 |
| MS.gene71128.t1 | MTR_4g038310 | 38.182 | 110 | 68 | 0 | 1 | 110 | 69 | 178 | 5.63e-17 | 82.0 |
| MS.gene71128.t1 | MTR_8g103540 | 31.897 | 116 | 70 | 1 | 6 | 121 | 74 | 180 | 2.72e-12 | 68.2 |
| MS.gene71128.t1 | MTR_4g012540 | 36.283 | 113 | 62 | 3 | 1 | 113 | 42 | 144 | 4.72e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71128.t1 | AT1G34220 | 77.519 | 129 | 29 | 0 | 1 | 129 | 72 | 200 | 3.86e-66 | 220 |
| MS.gene71128.t1 | AT1G34220 | 63.522 | 159 | 28 | 1 | 1 | 129 | 72 | 230 | 2.03e-60 | 205 |
| MS.gene71128.t1 | AT1G25420 | 59.375 | 128 | 52 | 0 | 2 | 129 | 5 | 132 | 1.69e-49 | 167 |
| MS.gene71128.t1 | AT1G25420 | 59.375 | 128 | 52 | 0 | 2 | 129 | 5 | 132 | 1.69e-49 | 167 |
| MS.gene71128.t1 | AT1G25420 | 59.375 | 128 | 52 | 0 | 2 | 129 | 46 | 173 | 1.04e-48 | 166 |
| MS.gene71128.t1 | AT1G25420 | 59.375 | 128 | 52 | 0 | 2 | 129 | 73 | 200 | 2.44e-48 | 166 |
| MS.gene71128.t1 | AT4G35730 | 48.750 | 160 | 77 | 2 | 2 | 157 | 87 | 245 | 1.26e-44 | 159 |
| MS.gene71128.t1 | AT2G19710 | 49.558 | 113 | 57 | 0 | 1 | 113 | 69 | 181 | 1.78e-33 | 131 |
| MS.gene71128.t1 | AT4G29440 | 44.248 | 113 | 63 | 0 | 1 | 113 | 41 | 153 | 8.23e-30 | 121 |
| MS.gene71128.t1 | AT4G29440 | 44.248 | 113 | 63 | 0 | 1 | 113 | 69 | 181 | 1.04e-29 | 120 |
| MS.gene71128.t1 | AT1G13340 | 37.736 | 106 | 64 | 1 | 17 | 120 | 89 | 194 | 2.54e-16 | 80.1 |
| MS.gene71128.t1 | AT2G14830 | 34.921 | 126 | 80 | 1 | 1 | 124 | 69 | 194 | 3.17e-15 | 76.6 |
| MS.gene71128.t1 | AT1G79910 | 31.967 | 122 | 74 | 1 | 1 | 122 | 14 | 126 | 5.74e-15 | 75.1 |
| MS.gene71128.t1 | AT1G79910 | 31.967 | 122 | 74 | 1 | 1 | 122 | 69 | 181 | 7.61e-15 | 75.5 |
| MS.gene71128.t1 | AT1G79910 | 31.967 | 122 | 74 | 1 | 1 | 122 | 55 | 167 | 1.32e-14 | 74.7 |
| MS.gene71128.t1 | AT4G32350 | 31.405 | 121 | 74 | 1 | 5 | 125 | 73 | 184 | 2.70e-12 | 68.6 |
| MS.gene71128.t1 | AT4G32350 | 31.405 | 121 | 74 | 1 | 5 | 125 | 73 | 184 | 2.70e-12 | 68.6 |
| MS.gene71128.t1 | AT1G52315 | 31.304 | 115 | 69 | 3 | 1 | 114 | 19 | 124 | 1.28e-11 | 65.1 |
| MS.gene71128.t1 | AT1G52315 | 31.304 | 115 | 69 | 3 | 1 | 114 | 69 | 174 | 2.45e-11 | 64.7 |
Find 81 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCTTTGAGATTCAATTAT+TGG | 0.131237 | 6.1:+19389331 | None:intergenic |
| ACATACTTCATTTGGTAAAA+TGG | 0.144053 | 6.1:-19387288 | MS.gene71128:CDS |
| AATAAACTCCTTCCCGTATT+TGG | 0.163503 | 6.1:+19388059 | None:intergenic |
| TCTTTGCCAACTGCAAATTT+TGG | 0.198735 | 6.1:-19387446 | MS.gene71128:CDS |
| CCCAAGGTGTGCCGATCTTC+CGG | 0.321646 | 6.1:-19388112 | MS.gene71128:CDS |
| TCACTATGCCTCGCACTATA+TGG | 0.338653 | 6.1:+19387134 | None:intergenic |
| CAGTTGGCAAAGATTGCATC+TGG | 0.374748 | 6.1:+19387456 | None:intergenic |
| GATGAATGAAGATCAACTTC+AGG | 0.381685 | 6.1:+19387380 | None:intergenic |
| GATGAACCACATACTTCATT+TGG | 0.386884 | 6.1:-19387296 | MS.gene71128:CDS |
| TCTCTTAGGCTGGTGACTAT+TGG | 0.387040 | 6.1:+19386608 | None:intergenic |
| CCGGAAGATCGGCACACCTT+GGG | 0.393760 | 6.1:+19388112 | None:intergenic |
| CAGCAATTTGCAACCAAATA+CGG | 0.396228 | 6.1:-19388072 | MS.gene71128:CDS |
| TCCATTGAAGGTAGTCTCTT+AGG | 0.417486 | 6.1:+19386594 | None:intergenic |
| CCTGGAGGTACAACCATATC+AGG | 0.420553 | 6.1:+19387416 | None:intergenic |
| ATCACCTGCATCGTATAATC+CGG | 0.431617 | 6.1:-19387225 | MS.gene71128:CDS |
| GGAAGAATCAAAATCTTCCT+TGG | 0.432019 | 6.1:+19386662 | None:intergenic |
| CTGTTGAACATGAGCTAGAT+TGG | 0.432183 | 6.1:-19387810 | MS.gene71128:CDS |
| AACTCTCAAAACTCAAATGT+TGG | 0.433932 | 6.1:-19386537 | MS.gene71128:CDS |
| GAAGTTGATCTTCATTCATC+AGG | 0.441980 | 6.1:-19387377 | MS.gene71128:CDS |
| TATAGCTTCCTTCAAGTCTA+GGG | 0.444965 | 6.1:+19388155 | None:intergenic |
| ATATAGCTTCCTTCAAGTCT+AGG | 0.445557 | 6.1:+19388154 | None:intergenic |
| GGAAATTCCCCTAGACTTGA+AGG | 0.446229 | 6.1:-19388163 | MS.gene71128:CDS |
| AACTCAGTTTCAGCAGTAGC+TGG | 0.456708 | 6.1:+19387784 | None:intergenic |
| ACTTGATGAATGAGAGCCTA+TGG | 0.457002 | 6.1:+19386704 | None:intergenic |
| CAAGTTCACAAAATAGTTCA+AGG | 0.459477 | 6.1:+19389368 | None:intergenic |
| GGTTCATCTCTGTGAACTGT+TGG | 0.481948 | 6.1:+19387311 | None:intergenic |
| GAAGAATCAAAATCTTCCTT+GGG | 0.490016 | 6.1:+19386663 | None:intergenic |
| CCTGATATGGTTGTACCTCC+AGG | 0.491027 | 6.1:-19387416 | MS.gene71128:CDS |
| TCCGGAAGATCGGCACACCT+TGG | 0.496517 | 6.1:+19388111 | None:intergenic |
| GCCTAAGAGACTACCTTCAA+TGG | 0.502160 | 6.1:-19386595 | MS.gene71128:CDS |
| TGATGGTGATGGAGAGGAGA+TGG | 0.507797 | 6.1:+19387163 | None:intergenic |
| TATGATGCAACCGTTTCTGA+TGG | 0.508082 | 6.1:+19387071 | None:intergenic |
| AGCAATTTGCAACCAAATAC+GGG | 0.513435 | 6.1:-19388071 | MS.gene71128:CDS |
| TCACCTGCATCGTATAATCC+GGG | 0.519163 | 6.1:-19387224 | MS.gene71128:CDS |
| TCCTTGGGTGTGTCAAATGA+AGG | 0.527759 | 6.1:+19386678 | None:intergenic |
| ATGAATGAAGATCAACTTCA+GGG | 0.530512 | 6.1:+19387381 | None:intergenic |
| TCAGGGTGTGGCATAGCACC+TGG | 0.535473 | 6.1:+19387398 | None:intergenic |
| TGCTGCTACCGAGCTCAGAC+CGG | 0.535929 | 6.1:-19388034 | MS.gene71128:CDS |
| TTTGAGATTCAATTATTGGA+AGG | 0.540093 | 6.1:+19389335 | None:intergenic |
| ACCACAATCCGGTCTGAGCT+CGG | 0.540431 | 6.1:+19388026 | None:intergenic |
| TTGAATCAACTCCGGAAGAT+CGG | 0.547023 | 6.1:+19388101 | None:intergenic |
| TTCCAATAATTGAATCTCAA+AGG | 0.548217 | 6.1:-19389333 | MS.gene71128:intron |
| TCTGATGGAGGCGCGATGAA+TGG | 0.551250 | 6.1:+19387248 | None:intergenic |
| TGTTGAACATGAGCTAGATT+GGG | 0.553057 | 6.1:-19387809 | MS.gene71128:CDS |
| TGGCGATTGACACCACAATC+CGG | 0.553866 | 6.1:+19388015 | None:intergenic |
| ATGCAACCGTTTCTGATGGA+GGG | 0.554803 | 6.1:+19387075 | None:intergenic |
| TGATTCCCCTCCATCAGAAA+CGG | 0.557161 | 6.1:-19387081 | MS.gene71128:intron |
| CGAAAACACGATCAGTTGGT+GGG | 0.558529 | 6.1:+19386640 | None:intergenic |
| TACGATGCAGGTGATTCTGA+TGG | 0.559275 | 6.1:+19387233 | None:intergenic |
| GCTGTGCCAAAATTTGCAGT+TGG | 0.560570 | 6.1:+19387440 | None:intergenic |
| GATGGTGATGGAGAGGAGAT+GGG | 0.562921 | 6.1:+19387164 | None:intergenic |
| GCACTATATGGTGCAGATGA+TGG | 0.564264 | 6.1:+19387146 | None:intergenic |
| TGAAGATCAACTTCAGGGTG+TGG | 0.567841 | 6.1:+19387386 | None:intergenic |
| GAGGATCATAATGCTTCCAT+AGG | 0.568453 | 6.1:-19386720 | MS.gene71128:CDS |
| GGATTGTGGTGTCAATCGCC+AGG | 0.570025 | 6.1:-19388013 | MS.gene71128:intron |
| TATGTGTCGTCATCCATTGA+AGG | 0.570269 | 6.1:+19386582 | None:intergenic |
| TTGAAGGTAGTCTCTTAGGC+TGG | 0.572482 | 6.1:+19386598 | None:intergenic |
| TCATCGAAAACACGATCAGT+TGG | 0.573469 | 6.1:+19386636 | None:intergenic |
| TCGAAAACACGATCAGTTGG+TGG | 0.589650 | 6.1:+19386639 | None:intergenic |
| TGCAACCGTTTCTGATGGAG+GGG | 0.590397 | 6.1:+19387076 | None:intergenic |
| TGCCCCGGATTATACGATGC+AGG | 0.593823 | 6.1:+19387221 | None:intergenic |
| ACCGAGCTCAGACCGGATTG+TGG | 0.595243 | 6.1:-19388027 | MS.gene71128:CDS |
| GAGATTCAATTATTGGAAGG+CGG | 0.597607 | 6.1:+19389338 | None:intergenic |
| TGTTGAACTTGAATCAACTC+CGG | 0.599269 | 6.1:+19388093 | None:intergenic |
| CGGAAGATCGGCACACCTTG+GGG | 0.607979 | 6.1:+19388113 | None:intergenic |
| TCCTTCATTTGACACACCCA+AGG | 0.611384 | 6.1:-19386679 | MS.gene71128:CDS |
| GTAGGTGAGTCACTATGCCC+CGG | 0.614652 | 6.1:+19387206 | None:intergenic |
| GTCACATATCATAAGTCGAA+CGG | 0.614868 | 6.1:+19386490 | None:intergenic |
| TTTGCAGTTGAAGGGAAGGG+AGG | 0.615751 | 6.1:+19387107 | None:intergenic |
| GATGCAACCGTTTCTGATGG+AGG | 0.616811 | 6.1:+19387074 | None:intergenic |
| GAAAACACGATCAGTTGGTG+GGG | 0.635889 | 6.1:+19386641 | None:intergenic |
| TGCAGATGATGGTGATGGAG+AGG | 0.639011 | 6.1:+19387157 | None:intergenic |
| GATGCAGGTGATTCTGATGG+AGG | 0.644840 | 6.1:+19387236 | None:intergenic |
| TATGGTGCAGATGATGGTGA+TGG | 0.647661 | 6.1:+19387152 | None:intergenic |
| CACCTGCATCGTATAATCCG+GGG | 0.651829 | 6.1:-19387223 | MS.gene71128:CDS |
| ATTTGCAACCAAATACGGGA+AGG | 0.660109 | 6.1:-19388067 | MS.gene71128:CDS |
| ATAGCTTCCTTCAAGTCTAG+GGG | 0.662258 | 6.1:+19388156 | None:intergenic |
| CATCTGCACCATATAGTGCG+AGG | 0.669080 | 6.1:-19387142 | MS.gene71128:CDS |
| TAGTTCAAGGATCTCTTGAG+CGG | 0.671252 | 6.1:+19389381 | None:intergenic |
| TAAGGATCATGATATTCACG+AGG | 0.686468 | 6.1:-19386739 | MS.gene71128:intron |
| GGGTGTGGCATAGCACCTGG+AGG | 0.743845 | 6.1:+19387401 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAATATATTACATAT+TGG | - | chr6.1:19386788-19386807 | MS.gene71128:intron | 10.0% |
| !!! | ATTTCTTAAATAATTTTACA+CGG | - | chr6.1:19387442-19387461 | MS.gene71128:CDS | 10.0% |
| !!! | TTTATGTTTTTGTTTTATTT+TGG | - | chr6.1:19387236-19387255 | MS.gene71128:CDS | 10.0% |
| !! | CAGATACAAAATAATAAAAA+CGG | + | chr6.1:19387674-19387693 | None:intergenic | 15.0% |
| !! | TAATTATGTTTCTTAAATCT+GGG | + | chr6.1:19387015-19387034 | None:intergenic | 15.0% |
| !! | TTAATTATGTTTCTTAAATC+TGG | + | chr6.1:19387016-19387035 | None:intergenic | 15.0% |
| !!! | TGTTTTATAGTATATTTGTT+TGG | - | chr6.1:19386716-19386735 | MS.gene71128:CDS | 15.0% |
| !! | AAATAAAACATTTGATTCCA+TGG | - | chr6.1:19387327-19387346 | MS.gene71128:CDS | 20.0% |
| !! | AATTATGTTTCTTAAATCTG+GGG | + | chr6.1:19387014-19387033 | None:intergenic | 20.0% |
| !! | ACATATACTTACAAAAAACT+TGG | + | chr6.1:19387598-19387617 | None:intergenic | 20.0% |
| !! | CATATACTTACAAAAAACTT+GGG | + | chr6.1:19387597-19387616 | None:intergenic | 20.0% |
| !! | TTTCTTATAAAGAAGATCAT+TGG | - | chr6.1:19387083-19387102 | MS.gene71128:CDS | 20.0% |
| !!! | ATGCTTTTTTCTAAAACATA+GGG | + | chr6.1:19387052-19387071 | None:intergenic | 20.0% |
| !!! | GTTTTTGTTTTATTTTGGTT+TGG | - | chr6.1:19387241-19387260 | MS.gene71128:CDS | 20.0% |
| !!! | TGAAGTTTTTAATGTTTTTC+TGG | - | chr6.1:19387569-19387588 | MS.gene71128:intron | 20.0% |
| !!! | TTCTTGTATTTTTTTGTTCT+AGG | - | chr6.1:19386944-19386963 | MS.gene71128:intron | 20.0% |
| !!! | TTTTGAGAGTTAAATAAGTT+GGG | + | chr6.1:19389330-19389349 | None:intergenic | 20.0% |
| ! | AAACATAATTAACGATGTTG+AGG | - | chr6.1:19387024-19387043 | MS.gene71128:intron | 25.0% |
| ! | ACATACTTCATTTGGTAAAA+TGG | - | chr6.1:19388588-19388607 | MS.gene71128:intron | 25.0% |
| ! | ACCAAATGATATGATATATG+GGG | - | chr6.1:19387361-19387380 | MS.gene71128:CDS | 25.0% |
| ! | AGCAAAGGAAAAAAGAAAAA+AGG | + | chr6.1:19387271-19387290 | None:intergenic | 25.0% |
| ! | ATCATGATCCTTAAAAACAT+TGG | + | chr6.1:19389130-19389149 | None:intergenic | 25.0% |
| ! | ATTATGTTTCTTAAATCTGG+GGG | + | chr6.1:19387013-19387032 | None:intergenic | 25.0% |
| ! | ATTCTGTAATACTAACTAGA+AGG | - | chr6.1:19388149-19388168 | MS.gene71128:CDS | 25.0% |
| ! | CACCAAATGATATGATATAT+GGG | - | chr6.1:19387360-19387379 | MS.gene71128:CDS | 25.0% |
| ! | TGTAGAACATGAAAAATTCA+CGG | + | chr6.1:19387891-19387910 | None:intergenic | 25.0% |
| ! | TTAGAGATTGAAAGTAAATC+TGG | - | chr6.1:19386570-19386589 | MS.gene71128:CDS | 25.0% |
| ! | TTCCAATAATTGAATCTCAA+AGG | - | chr6.1:19386543-19386562 | MS.gene71128:CDS | 25.0% |
| ! | TTCTGTAATACTAACTAGAA+GGG | - | chr6.1:19388150-19388169 | MS.gene71128:CDS | 25.0% |
| !! | ATTTTACCAAATGAAGTATG+TGG | + | chr6.1:19388589-19388608 | None:intergenic | 25.0% |
| !! | TTTGAGATTCAATTATTGGA+AGG | + | chr6.1:19386544-19386563 | None:intergenic | 25.0% |
| !!! | CATGCTTTTTTCTAAAACAT+AGG | + | chr6.1:19387053-19387072 | None:intergenic | 25.0% |
| !!! | GTTTTGAGAGTTAAATAAGT+TGG | + | chr6.1:19389331-19389350 | None:intergenic | 25.0% |
| !!! | TACCTTTGAGATTCAATTAT+TGG | + | chr6.1:19386548-19386567 | None:intergenic | 25.0% |
| !!! | TGCTTTTTTCTAAAACATAG+GGG | + | chr6.1:19387051-19387070 | None:intergenic | 25.0% |
| !!! | TTGTATTTTTTTGTTCTAGG+TGG | - | chr6.1:19386947-19386966 | MS.gene71128:intron | 25.0% |
| AACTCTCAAAACTCAAATGT+TGG | - | chr6.1:19389339-19389358 | MS.gene71128:CDS | 30.0% | |
| AACTGATCAAATAGCTAGTA+CGG | - | chr6.1:19386683-19386702 | MS.gene71128:CDS | 30.0% | |
| ACCCCATATATCATATCATT+TGG | + | chr6.1:19387365-19387384 | None:intergenic | 30.0% | |
| AGGGATCATAAAAGTTCTAT+AGG | - | chr6.1:19389093-19389112 | MS.gene71128:intron | 30.0% | |
| ATCCTTAAAAACATTGGCAT+AGG | + | chr6.1:19389124-19389143 | None:intergenic | 30.0% | |
| ATGAATGAAGATCAACTTCA+GGG | + | chr6.1:19388498-19388517 | None:intergenic | 30.0% | |
| ATGTTCATTACTTCTCATCT+TGG | + | chr6.1:19389007-19389026 | None:intergenic | 30.0% | |
| CAAGTTCACAAAATAGTTCA+AGG | + | chr6.1:19386511-19386530 | None:intergenic | 30.0% | |
| CCACCAAATGATATGATATA+TGG | - | chr6.1:19387359-19387378 | MS.gene71128:CDS | 30.0% | |
| CCATATATCATATCATTTGG+TGG | + | chr6.1:19387362-19387381 | None:intergenic | 30.0% | |
| CTTCAACTGTAACAATGAAT+AGG | + | chr6.1:19387632-19387651 | None:intergenic | 30.0% | |
| GAAGAATCAAAATCTTCCTT+GGG | + | chr6.1:19389216-19389235 | None:intergenic | 30.0% | |
| TAAAAAACACGAAGACTTAC+TGG | - | chr6.1:19388118-19388137 | MS.gene71128:CDS | 30.0% | |
| TAGAACATCGAAATAAGCAA+AGG | + | chr6.1:19387286-19387305 | None:intergenic | 30.0% | |
| TCCTTAAAAACATTGGCATA+GGG | + | chr6.1:19389123-19389142 | None:intergenic | 30.0% | |
| TCTGTAATACTAACTAGAAG+GGG | - | chr6.1:19388151-19388170 | MS.gene71128:CDS | 30.0% | |
| TGAATACTAAGTTAAGCGAA+TGG | - | chr6.1:19386753-19386772 | MS.gene71128:intron | 30.0% | |
| TGTATCATTAACATCATGAG+TGG | + | chr6.1:19388326-19388345 | None:intergenic | 30.0% | |
| TGTTTGTACTACGTGTATTT+CGG | - | chr6.1:19387474-19387493 | MS.gene71128:intron | 30.0% | |
| TTATGTTTCTTAAATCTGGG+GGG | + | chr6.1:19387012-19387031 | None:intergenic | 30.0% | |
| TTGCATCATATAATGCAACA+AGG | - | chr6.1:19388818-19388837 | MS.gene71128:intron | 30.0% | |
| ! | AATCAGATTTTGCAGTTGAA+GGG | + | chr6.1:19388780-19388799 | None:intergenic | 30.0% |
| ! | AGGAACTAATTGTTTCTCTT+AGG | - | chr6.1:19386843-19386862 | MS.gene71128:intron | 30.0% |
| ! | TTTTGACCCACCAAAAAATT+CGG | + | chr6.1:19388263-19388282 | None:intergenic | 30.0% |
| !! | AACATTTTCAAAAGAGCACA+TGG | + | chr6.1:19386897-19386916 | None:intergenic | 30.0% |
| !! | AGATTTTACAGATTTGAAGC+AGG | - | chr6.1:19388531-19388550 | MS.gene71128:intron | 30.0% |
| !! | TGAAGTTTTAATGTTGTGCA+GGG | - | chr6.1:19387692-19387711 | MS.gene71128:intron | 30.0% |
| !!! | GAATCAAGTTGCTCTTTTTT+CGG | + | chr6.1:19388349-19388368 | None:intergenic | 30.0% |
| AATAAACTCCTTCCCGTATT+TGG | + | chr6.1:19387820-19387839 | None:intergenic | 35.0% | |
| ACATTAGATTCAGATTTCGC+AGG | + | chr6.1:19388871-19388890 | None:intergenic | 35.0% | |
| ACGTGTATTTCGGTATCATA+TGG | - | chr6.1:19387484-19387503 | MS.gene71128:intron | 35.0% | |
| AGCAATTTGCAACCAAATAC+GGG | - | chr6.1:19387805-19387824 | MS.gene71128:CDS | 35.0% | |
| ATATAGCTTCCTTCAAGTCT+AGG | + | chr6.1:19387725-19387744 | None:intergenic | 35.0% | |
| ATGATATATGGGGTCAAACA+TGG | - | chr6.1:19387371-19387390 | MS.gene71128:CDS | 35.0% | |
| CAGCAATTTGCAACCAAATA+CGG | - | chr6.1:19387804-19387823 | MS.gene71128:CDS | 35.0% | |
| CCTTAAAAACATTGGCATAG+GGG | + | chr6.1:19389122-19389141 | None:intergenic | 35.0% | |
| GAGATTCAATTATTGGAAGG+CGG | + | chr6.1:19386541-19386560 | None:intergenic | 35.0% | |
| GATGAACCACATACTTCATT+TGG | - | chr6.1:19388580-19388599 | MS.gene71128:intron | 35.0% | |
| GATGAATGAAGATCAACTTC+AGG | + | chr6.1:19388499-19388518 | None:intergenic | 35.0% | |
| GGAAGAATCAAAATCTTCCT+TGG | + | chr6.1:19389217-19389236 | None:intergenic | 35.0% | |
| TAAGGATCATGATATTCACG+AGG | - | chr6.1:19389137-19389156 | MS.gene71128:intron | 35.0% | |
| TATAGCTTCCTTCAAGTCTA+GGG | + | chr6.1:19387724-19387743 | None:intergenic | 35.0% | |
| TCGGTATCATATGGAAAACT+AGG | - | chr6.1:19387493-19387512 | MS.gene71128:intron | 35.0% | |
| TGAATCTAATGTGGACTTGA+AGG | - | chr6.1:19388879-19388898 | MS.gene71128:intron | 35.0% | |
| TGCGAAATCTGAATCTAATG+TGG | - | chr6.1:19388870-19388889 | MS.gene71128:intron | 35.0% | |
| TGTTGAACATGAGCTAGATT+GGG | - | chr6.1:19388067-19388086 | MS.gene71128:CDS | 35.0% | |
| TGTTGAACTTGAATCAACTC+CGG | + | chr6.1:19387786-19387805 | None:intergenic | 35.0% | |
| TTGTTGCCTTCAGCATAAAA+TGG | + | chr6.1:19389054-19389073 | None:intergenic | 35.0% | |
| ! | AGAAGAGTGAGTTTCTTTTC+TGG | + | chr6.1:19388035-19388054 | None:intergenic | 35.0% |
| ! | AGACTCTTGATTTTCTTTCG+TGG | - | chr6.1:19387910-19387929 | MS.gene71128:intron | 35.0% |
| ! | ATCATATCATTTGGTGGACA+TGG | + | chr6.1:19387356-19387375 | None:intergenic | 35.0% |
| ! | GAACTTTTATGATCCCTTTC+TGG | + | chr6.1:19389090-19389109 | None:intergenic | 35.0% |
| ! | GAAGTTGATCTTCATTCATC+AGG | - | chr6.1:19388499-19388518 | MS.gene71128:intron | 35.0% |
| ! | GAATCAGATTTTGCAGTTGA+AGG | + | chr6.1:19388781-19388800 | None:intergenic | 35.0% |
| ! | GAGAATCCATTTTATGCTGA+AGG | - | chr6.1:19389045-19389064 | MS.gene71128:intron | 35.0% |
| ! | GTCATGTTTTTCTTCAGCAA+GGG | + | chr6.1:19388290-19388309 | None:intergenic | 35.0% |
| ! | TCATGTTTTTCTTCAGCAAG+GGG | + | chr6.1:19388289-19388308 | None:intergenic | 35.0% |
| ! | TCTTTGCCAACTGCAAATTT+TGG | - | chr6.1:19388430-19388449 | MS.gene71128:intron | 35.0% |
| !! | CTGAAGTTTTAATGTTGTGC+AGG | - | chr6.1:19387691-19387710 | MS.gene71128:intron | 35.0% |
| ACTTGATGAATGAGAGCCTA+TGG | + | chr6.1:19389175-19389194 | None:intergenic | 40.0% | |
| ATAGCTTCCTTCAAGTCTAG+GGG | + | chr6.1:19387723-19387742 | None:intergenic | 40.0% | |
| ATCACCTGCATCGTATAATC+CGG | - | chr6.1:19388651-19388670 | MS.gene71128:intron | 40.0% | |
| ATGAGACTTCAACACCAGAA+AGG | - | chr6.1:19389073-19389092 | MS.gene71128:intron | 40.0% | |
| ATTTGCAACCAAATACGGGA+AGG | - | chr6.1:19387809-19387828 | MS.gene71128:CDS | 40.0% | |
| CAAATAGCTAGTACGGATGA+TGG | - | chr6.1:19386690-19386709 | MS.gene71128:CDS | 40.0% | |
| CATGAAAAATTCACGGAACC+TGG | + | chr6.1:19387884-19387903 | None:intergenic | 40.0% | |
| CATTCCTCTTCTTGTCAGAA+TGG | - | chr6.1:19388232-19388251 | MS.gene71128:intron | 40.0% | |
| CTGTTGAACATGAGCTAGAT+TGG | - | chr6.1:19388066-19388085 | MS.gene71128:CDS | 40.0% | |
| GAGGATCATAATGCTTCCAT+AGG | - | chr6.1:19389156-19389175 | MS.gene71128:intron | 40.0% | |
| GTTCCTCCTAAGTGATATAC+TGG | + | chr6.1:19386829-19386848 | None:intergenic | 40.0% | |
| TAACATCCATGATGCTACAG+CGG | + | chr6.1:19387201-19387220 | None:intergenic | 40.0% | |
| TAGTTCAAGGATCTCTTGAG+CGG | + | chr6.1:19386498-19386517 | None:intergenic | 40.0% | |
| TATGATGCAACCGTTTCTGA+TGG | + | chr6.1:19388808-19388827 | None:intergenic | 40.0% | |
| TATGTGTCGTCATCCATTGA+AGG | + | chr6.1:19389297-19389316 | None:intergenic | 40.0% | |
| TCATCGAAAACACGATCAGT+TGG | + | chr6.1:19389243-19389262 | None:intergenic | 40.0% | |
| TCCATTGAAGGTAGTCTCTT+AGG | + | chr6.1:19389285-19389304 | None:intergenic | 40.0% | |
| TGAGACTTCAACACCAGAAA+GGG | - | chr6.1:19389074-19389093 | MS.gene71128:intron | 40.0% | |
| TGCTGAAGAAAAACATGACG+AGG | - | chr6.1:19388291-19388310 | MS.gene71128:intron | 40.0% | |
| TTGAATCAACTCCGGAAGAT+CGG | + | chr6.1:19387778-19387797 | None:intergenic | 40.0% | |
| ! | AGAGTGCCAGTATATCACTT+AGG | - | chr6.1:19386820-19386839 | MS.gene71128:intron | 40.0% |
| ! | AGATTTTGCAGTTGAAGGGA+AGG | + | chr6.1:19388776-19388795 | None:intergenic | 40.0% |
| ! | CGTCATGTTTTTCTTCAGCA+AGG | + | chr6.1:19388291-19388310 | None:intergenic | 40.0% |
| ! | GATTTTGCAGTTGAAGGGAA+GGG | + | chr6.1:19388775-19388794 | None:intergenic | 40.0% |
| !! | AGGAGATGGGTTTTTCAGTT+GGG | + | chr6.1:19388702-19388721 | None:intergenic | 40.0% |
| !! | CCCCTATGCCAATGTTTTTA+AGG | - | chr6.1:19389119-19389138 | MS.gene71128:intron | 40.0% |
| !! | GTGAGTTTCTTTTCTGGTGA+AGG | + | chr6.1:19388029-19388048 | None:intergenic | 40.0% |
| AACTCAGTTTCAGCAGTAGC+TGG | + | chr6.1:19388095-19388114 | None:intergenic | 45.0% | |
| ACCCACCAAAAAATTCGGTC+GGG | + | chr6.1:19388258-19388277 | None:intergenic | 45.0% | |
| ACGTATGTCTTCGGAACTTC+AGG | + | chr6.1:19388400-19388419 | None:intergenic | 45.0% | |
| AGATTTCGCAGGTGACAAAG+TGG | + | chr6.1:19388860-19388879 | None:intergenic | 45.0% | |
| ATGCAACCGTTTCTGATGGA+GGG | + | chr6.1:19388804-19388823 | None:intergenic | 45.0% | |
| CAGTTGGCAAAGATTGCATC+TGG | + | chr6.1:19388423-19388442 | None:intergenic | 45.0% | |
| CGAAAACACGATCAGTTGGT+GGG | + | chr6.1:19389239-19389258 | None:intergenic | 45.0% | |
| CGCTAATACGAAGTTGAGCA+AGG | + | chr6.1:19388978-19388997 | None:intergenic | 45.0% | |
| GACCCACCAAAAAATTCGGT+CGG | + | chr6.1:19388259-19388278 | None:intergenic | 45.0% | |
| GATTTCGCAGGTGACAAAGT+GGG | + | chr6.1:19388859-19388878 | None:intergenic | 45.0% | |
| GCACTATATGGTGCAGATGA+TGG | + | chr6.1:19388733-19388752 | None:intergenic | 45.0% | |
| GCCTAAGAGACTACCTTCAA+TGG | - | chr6.1:19389281-19389300 | MS.gene71128:intron | 45.0% | |
| GCCTTCGTTTGGTATGTTCA+GGG | - | chr6.1:19386870-19386889 | MS.gene71128:intron | 45.0% | |
| GCTGTGCCAAAATTTGCAGT+TGG | + | chr6.1:19388439-19388458 | None:intergenic | 45.0% | |
| GGAAATTCCCCTAGACTTGA+AGG | - | chr6.1:19387713-19387732 | MS.gene71128:intron | 45.0% | |
| GGATTCTCAGAGCTACTATC+AGG | + | chr6.1:19389033-19389052 | None:intergenic | 45.0% | |
| GGTTCATCTCTGTGAACTGT+TGG | + | chr6.1:19388568-19388587 | None:intergenic | 45.0% | |
| GTGCCAGTATATCACTTAGG+AGG | - | chr6.1:19386823-19386842 | MS.gene71128:intron | 45.0% | |
| TACGATGCAGGTGATTCTGA+TGG | + | chr6.1:19388646-19388665 | None:intergenic | 45.0% | |
| TCACCTGCATCGTATAATCC+GGG | - | chr6.1:19388652-19388671 | MS.gene71128:intron | 45.0% | |
| TCACTATGCCTCGCACTATA+TGG | + | chr6.1:19388745-19388764 | None:intergenic | 45.0% | |
| TCCCTGAACATACCAAACGA+AGG | + | chr6.1:19386874-19386893 | None:intergenic | 45.0% | |
| TCCTTCATTTGACACACCCA+AGG | - | chr6.1:19389197-19389216 | MS.gene71128:intron | 45.0% | |
| TCCTTGGGTGTGTCAAATGA+AGG | + | chr6.1:19389201-19389220 | None:intergenic | 45.0% | |
| TCGAAAACACGATCAGTTGG+TGG | + | chr6.1:19389240-19389259 | None:intergenic | 45.0% | |
| TCTCTTAGGCTGGTGACTAT+TGG | + | chr6.1:19389271-19389290 | None:intergenic | 45.0% | |
| TCTTAGGTGATGCCTTCGTT+TGG | - | chr6.1:19386859-19386878 | MS.gene71128:intron | 45.0% | |
| TGAAGATCAACTTCAGGGTG+TGG | + | chr6.1:19388493-19388512 | None:intergenic | 45.0% | |
| TGATTCCCCTCCATCAGAAA+CGG | - | chr6.1:19388795-19388814 | MS.gene71128:intron | 45.0% | |
| TGCATCTGGACGTATGTCTT+CGG | + | chr6.1:19388409-19388428 | None:intergenic | 45.0% | |
| TGCCTTCGTTTGGTATGTTC+AGG | - | chr6.1:19386869-19386888 | MS.gene71128:intron | 45.0% | |
| TTGAAGGTAGTCTCTTAGGC+TGG | + | chr6.1:19389281-19389300 | None:intergenic | 45.0% | |
| ! | GAAAACACGATCAGTTGGTG+GGG | + | chr6.1:19389238-19389257 | None:intergenic | 45.0% |
| ! | GTATATGTTTTGCTGCCCCA+AGG | - | chr6.1:19387748-19387767 | MS.gene71128:intron | 45.0% |
| ! | TATGGTGCAGATGATGGTGA+TGG | + | chr6.1:19388727-19388746 | None:intergenic | 45.0% |
| ! | TTTTCAGTTGGGAAGGAGGT+AGG | + | chr6.1:19388691-19388710 | None:intergenic | 45.0% |
| ! | TTTTGGCACAGCTCCTGATA+TGG | - | chr6.1:19388447-19388466 | MS.gene71128:intron | 45.0% |
| ! | TTTTGTCCGCTGTAGCATCA+TGG | - | chr6.1:19387192-19387211 | MS.gene71128:CDS | 45.0% |
| !! | GAGGAGATGGGTTTTTCAGT+TGG | + | chr6.1:19388703-19388722 | None:intergenic | 45.0% |
| !! | GATGGGTTTTTCAGTTGGGA+AGG | + | chr6.1:19388698-19388717 | None:intergenic | 45.0% |
| !!! | AATGGCCCGACCGAATTTTT+TGG | - | chr6.1:19388250-19388269 | MS.gene71128:intron | 45.0% |
| ACGAAGTTGAGCAAGGCTAG+CGG | + | chr6.1:19388971-19388990 | None:intergenic | 50.0% | |
| CACCTGCATCGTATAATCCG+GGG | - | chr6.1:19388653-19388672 | MS.gene71128:intron | 50.0% | |
| CATCTGCACCATATAGTGCG+AGG | - | chr6.1:19388734-19388753 | MS.gene71128:intron | 50.0% | |
| CCTGATATGGTTGTACCTCC+AGG | - | chr6.1:19388460-19388479 | MS.gene71128:intron | 50.0% | |
| GATGCAACCGTTTCTGATGG+AGG | + | chr6.1:19388805-19388824 | None:intergenic | 50.0% | |
| GATGCAGGTGATTCTGATGG+AGG | + | chr6.1:19388643-19388662 | None:intergenic | 50.0% | |
| TGCAACCGTTTCTGATGGAG+GGG | + | chr6.1:19388803-19388822 | None:intergenic | 50.0% | |
| TGGCGATTGACACCACAATC+CGG | + | chr6.1:19387864-19387883 | None:intergenic | 50.0% | |
| TTTGCAGTTGAAGGGAAGGG+AGG | + | chr6.1:19388772-19388791 | None:intergenic | 50.0% | |
| ! | CCTGGAGGTACAACCATATC+AGG | + | chr6.1:19388463-19388482 | None:intergenic | 50.0% |
| ! | TTTGGTGGACATGGATGCCA+TGG | + | chr6.1:19387347-19387366 | None:intergenic | 50.0% |
| !! | GATGGTGATGGAGAGGAGAT+GGG | + | chr6.1:19388715-19388734 | None:intergenic | 50.0% |
| !! | GGGTTTTTCAGTTGGGAAGG+AGG | + | chr6.1:19388695-19388714 | None:intergenic | 50.0% |
| !! | TGATGGTGATGGAGAGGAGA+TGG | + | chr6.1:19388716-19388735 | None:intergenic | 50.0% |
| !! | TGCAGATGATGGTGATGGAG+AGG | + | chr6.1:19388722-19388741 | None:intergenic | 50.0% |
| !!! | GCCCGACCGAATTTTTTGGT+GGG | - | chr6.1:19388254-19388273 | MS.gene71128:intron | 50.0% |
| ACCACAATCCGGTCTGAGCT+CGG | + | chr6.1:19387853-19387872 | None:intergenic | 55.0% | |
| CGGGCCATTCTGACAAGAAG+AGG | + | chr6.1:19388239-19388258 | None:intergenic | 55.0% | |
| GTAGGTGAGTCACTATGCCC+CGG | + | chr6.1:19388673-19388692 | None:intergenic | 55.0% | |
| TGCCCCGGATTATACGATGC+AGG | + | chr6.1:19388658-19388677 | None:intergenic | 55.0% | |
| TTCGCAGGTGACAAAGTGGG+AGG | + | chr6.1:19388856-19388875 | None:intergenic | 55.0% | |
| ! | GGATTGTGGTGTCAATCGCC+AGG | - | chr6.1:19387863-19387882 | MS.gene71128:CDS | 55.0% |
| ! | TCTGATGGAGGCGCGATGAA+TGG | + | chr6.1:19388631-19388650 | None:intergenic | 55.0% |
| !!! | GGCCCGACCGAATTTTTTGG+TGG | - | chr6.1:19388253-19388272 | MS.gene71128:intron | 55.0% |
| ACCGAGCTCAGACCGGATTG+TGG | - | chr6.1:19387849-19387868 | MS.gene71128:CDS | 60.0% | |
| CCGGAAGATCGGCACACCTT+GGG | + | chr6.1:19387767-19387786 | None:intergenic | 60.0% | |
| CGGAAGATCGGCACACCTTG+GGG | + | chr6.1:19387766-19387785 | None:intergenic | 60.0% | |
| TCAGGGTGTGGCATAGCACC+TGG | + | chr6.1:19388481-19388500 | None:intergenic | 60.0% | |
| TCCGGAAGATCGGCACACCT+TGG | + | chr6.1:19387768-19387787 | None:intergenic | 60.0% | |
| TGCTGCTACCGAGCTCAGAC+CGG | - | chr6.1:19387842-19387861 | MS.gene71128:CDS | 60.0% | |
| ! | CCCAAGGTGTGCCGATCTTC+CGG | - | chr6.1:19387764-19387783 | MS.gene71128:CDS | 60.0% |
| GGGTGTGGCATAGCACCTGG+AGG | + | chr6.1:19388478-19388497 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 19386491 | 19389407 | 19386491 | ID=MS.gene71128 |
| chr6.1 | mRNA | 19386491 | 19389407 | 19386491 | ID=MS.gene71128.t1;Parent=MS.gene71128 |
| chr6.1 | exon | 19389334 | 19389407 | 19389334 | ID=MS.gene71128.t1.exon1;Parent=MS.gene71128.t1 |
| chr6.1 | CDS | 19389334 | 19389407 | 19389334 | ID=cds.MS.gene71128.t1;Parent=MS.gene71128.t1 |
| chr6.1 | exon | 19388014 | 19388185 | 19388014 | ID=MS.gene71128.t1.exon2;Parent=MS.gene71128.t1 |
| chr6.1 | CDS | 19388014 | 19388185 | 19388014 | ID=cds.MS.gene71128.t1;Parent=MS.gene71128.t1 |
| chr6.1 | exon | 19387759 | 19387899 | 19387759 | ID=MS.gene71128.t1.exon3;Parent=MS.gene71128.t1 |
| chr6.1 | CDS | 19387759 | 19387899 | 19387759 | ID=cds.MS.gene71128.t1;Parent=MS.gene71128.t1 |
| chr6.1 | exon | 19387082 | 19387486 | 19387082 | ID=MS.gene71128.t1.exon4;Parent=MS.gene71128.t1 |
| chr6.1 | CDS | 19387082 | 19387486 | 19387082 | ID=cds.MS.gene71128.t1;Parent=MS.gene71128.t1 |
| chr6.1 | exon | 19386491 | 19386757 | 19386491 | ID=MS.gene71128.t1.exon5;Parent=MS.gene71128.t1 |
| chr6.1 | CDS | 19386491 | 19386757 | 19386491 | ID=cds.MS.gene71128.t1;Parent=MS.gene71128.t1 |
| Gene Sequence |
| Protein sequence |
