Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71226.t1 | KEH16899.1 | 75.2 | 323 | 80 | 0 | 7 | 329 | 11 | 333 | 1.20E-144 | 522.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71226.t1 | P52839 | 50.9 | 328 | 155 | 2 | 2 | 329 | 3 | 324 | 2.9e-94 | 346.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71226.t1 | G7IXE9 | 75.2 | 323 | 80 | 0 | 7 | 329 | 11 | 333 | 8.9e-145 | 522.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55382 | MS.gene71226 | PPI |
| MS.gene71226 | MS.gene53169 | PPI |
| MS.gene71226 | MS.gene99693 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71226.t1 | MTR_0071s0010 | 75.232 | 323 | 80 | 0 | 7 | 329 | 11 | 333 | 0.0 | 516 |
| MS.gene71226.t1 | MTR_3g046670 | 75.232 | 323 | 80 | 0 | 7 | 329 | 11 | 333 | 0.0 | 516 |
| MS.gene71226.t1 | MTR_3g435130 | 72.783 | 327 | 89 | 0 | 3 | 329 | 8 | 334 | 0.0 | 504 |
| MS.gene71226.t1 | MTR_8g066220 | 69.725 | 327 | 98 | 1 | 3 | 329 | 8 | 333 | 6.27e-169 | 473 |
| MS.gene71226.t1 | MTR_8g066210 | 67.278 | 327 | 91 | 2 | 3 | 329 | 8 | 318 | 1.61e-159 | 448 |
| MS.gene71226.t1 | MTR_3g013500 | 53.292 | 319 | 148 | 1 | 11 | 329 | 20 | 337 | 2.65e-122 | 355 |
| MS.gene71226.t1 | MTR_7g007710 | 51.242 | 322 | 145 | 4 | 15 | 329 | 16 | 332 | 1.13e-115 | 338 |
| MS.gene71226.t1 | MTR_7g007680 | 47.484 | 318 | 158 | 4 | 15 | 329 | 22 | 333 | 8.31e-107 | 317 |
| MS.gene71226.t1 | MTR_8g040820 | 47.335 | 319 | 163 | 4 | 15 | 329 | 27 | 344 | 2.50e-106 | 315 |
| MS.gene71226.t1 | MTR_8g035720 | 46.505 | 329 | 172 | 2 | 5 | 329 | 78 | 406 | 6.85e-106 | 316 |
| MS.gene71226.t1 | MTR_8g040490 | 46.584 | 322 | 168 | 3 | 11 | 329 | 23 | 343 | 1.02e-101 | 304 |
| MS.gene71226.t1 | MTR_8g040430 | 46.177 | 327 | 170 | 5 | 8 | 329 | 20 | 345 | 1.03e-101 | 303 |
| MS.gene71226.t1 | MTR_8g066280 | 74.468 | 188 | 48 | 0 | 142 | 329 | 22 | 209 | 1.20e-98 | 290 |
| MS.gene71226.t1 | MTR_8g041790 | 46.708 | 319 | 146 | 6 | 16 | 329 | 26 | 325 | 2.25e-98 | 293 |
| MS.gene71226.t1 | MTR_8g040520 | 48.571 | 315 | 154 | 4 | 11 | 321 | 23 | 333 | 2.12e-93 | 281 |
| MS.gene71226.t1 | MTR_3g434790 | 69.613 | 181 | 55 | 0 | 149 | 329 | 54 | 234 | 9.28e-89 | 266 |
| MS.gene71226.t1 | MTR_3g434790 | 67.347 | 49 | 16 | 0 | 3 | 51 | 9 | 57 | 1.76e-14 | 72.0 |
| MS.gene71226.t1 | MTR_8g040250 | 42.540 | 315 | 141 | 6 | 19 | 329 | 15 | 293 | 2.39e-80 | 246 |
| MS.gene71226.t1 | MTR_8g014380 | 44.407 | 295 | 123 | 5 | 15 | 307 | 26 | 281 | 3.84e-79 | 243 |
| MS.gene71226.t1 | MTR_8g040820 | 47.032 | 219 | 112 | 3 | 115 | 329 | 27 | 245 | 1.45e-69 | 217 |
| MS.gene71226.t1 | MTR_8g040430 | 47.489 | 219 | 111 | 3 | 115 | 329 | 27 | 245 | 1.54e-67 | 212 |
| MS.gene71226.t1 | MTR_8g040730 | 51.381 | 181 | 79 | 5 | 73 | 248 | 39 | 215 | 3.27e-45 | 161 |
| MS.gene71226.t1 | MTR_8g040730 | 45.614 | 171 | 87 | 3 | 16 | 184 | 342 | 508 | 3.47e-38 | 142 |
| MS.gene71226.t1 | MTR_8g040710 | 51.351 | 148 | 70 | 1 | 174 | 319 | 135 | 282 | 2.39e-44 | 153 |
| MS.gene71226.t1 | MTR_8g066190 | 59.259 | 108 | 26 | 1 | 222 | 329 | 3 | 92 | 6.58e-34 | 120 |
| MS.gene71226.t1 | MTR_8g040315 | 45.669 | 127 | 68 | 1 | 203 | 329 | 7 | 132 | 3.16e-27 | 104 |
| MS.gene71226.t1 | MTR_8g040410 | 49.153 | 59 | 29 | 1 | 62 | 119 | 22 | 80 | 8.06e-13 | 65.5 |
| MS.gene71226.t1 | MTR_8g040410 | 34.831 | 89 | 40 | 1 | 213 | 301 | 75 | 145 | 3.75e-12 | 63.5 |
| MS.gene71226.t1 | MTR_8g066200 | 52.632 | 57 | 27 | 0 | 126 | 182 | 4 | 60 | 5.07e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71226.t1 | AT3G45070 | 52.681 | 317 | 147 | 3 | 14 | 329 | 14 | 328 | 9.86e-113 | 330 |
| MS.gene71226.t1 | AT3G45070 | 52.681 | 317 | 147 | 3 | 14 | 329 | 9 | 323 | 1.45e-112 | 330 |
| MS.gene71226.t1 | AT3G45070 | 52.681 | 317 | 147 | 3 | 14 | 329 | 41 | 355 | 1.49e-112 | 331 |
| MS.gene71226.t1 | AT2G03760 | 50.610 | 328 | 156 | 2 | 2 | 329 | 3 | 324 | 1.10e-111 | 327 |
| MS.gene71226.t1 | AT5G07010 | 48.000 | 325 | 167 | 2 | 6 | 329 | 33 | 356 | 2.03e-110 | 325 |
| MS.gene71226.t1 | AT5G07000 | 45.963 | 322 | 170 | 3 | 11 | 329 | 24 | 344 | 1.88e-104 | 310 |
| MS.gene71226.t1 | AT3G45080 | 50.629 | 318 | 153 | 4 | 14 | 329 | 14 | 329 | 3.45e-103 | 306 |
| MS.gene71226.t1 | AT2G03770 | 47.516 | 322 | 156 | 3 | 2 | 321 | 4 | 314 | 1.08e-101 | 302 |
| MS.gene71226.t1 | AT1G13420 | 51.290 | 310 | 143 | 4 | 20 | 327 | 26 | 329 | 1.74e-101 | 301 |
| MS.gene71226.t1 | AT1G28170 | 51.057 | 331 | 155 | 6 | 1 | 329 | 1 | 326 | 6.14e-101 | 300 |
| MS.gene71226.t1 | AT2G03750 | 46.296 | 324 | 171 | 3 | 6 | 329 | 30 | 350 | 1.36e-94 | 285 |
| MS.gene71226.t1 | AT4G26280 | 49.045 | 314 | 139 | 3 | 10 | 321 | 7 | 301 | 6.54e-94 | 282 |
| MS.gene71226.t1 | AT5G43690 | 45.872 | 327 | 172 | 4 | 6 | 329 | 7 | 331 | 3.28e-92 | 278 |
| MS.gene71226.t1 | AT2G14920 | 45.079 | 315 | 165 | 4 | 20 | 329 | 22 | 333 | 2.86e-88 | 268 |
| MS.gene71226.t1 | AT1G13430 | 45.897 | 329 | 156 | 5 | 20 | 329 | 26 | 351 | 2.89e-86 | 263 |
| MS.gene71226.t1 | AT1G18590 | 43.987 | 316 | 161 | 7 | 20 | 327 | 34 | 341 | 6.99e-85 | 260 |
| MS.gene71226.t1 | AT1G74100 | 43.175 | 315 | 165 | 5 | 20 | 327 | 26 | 333 | 1.71e-84 | 258 |
| MS.gene71226.t1 | AT2G27570 | 43.438 | 320 | 125 | 4 | 10 | 329 | 10 | 273 | 8.32e-82 | 249 |
| MS.gene71226.t1 | AT1G74090 | 43.987 | 316 | 161 | 6 | 20 | 327 | 38 | 345 | 5.40e-78 | 242 |
Find 71 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTCTTGTTCCCTTCT+TGG | 0.122818 | 8.3:-36676725 | MS.gene71226:CDS |
| TCATATTCTTCCAAGTATTT+TGG | 0.152482 | 8.3:+36677030 | None:intergenic |
| TCCACCAATACCAAGGATTT+TGG | 0.218522 | 8.3:-36676939 | MS.gene71226:CDS |
| GAGCCAAGTGGTACCTGATT+TGG | 0.249783 | 8.3:+36676831 | None:intergenic |
| GTTGAGTCTTTGATAGATTT+CGG | 0.273652 | 8.3:+36676607 | None:intergenic |
| AGGATATTGGAAGGAAAGTT+TGG | 0.285930 | 8.3:-36676416 | MS.gene71226:CDS |
| CTCTCGAATGCCTCTTCTAA+TGG | 0.302803 | 8.3:+36676487 | None:intergenic |
| AGCCAAGTGGTACCTGATTT+GGG | 0.328372 | 8.3:+36676832 | None:intergenic |
| AGTGAAACAAAAGTGTCTTT+TGG | 0.331004 | 8.3:+36676556 | None:intergenic |
| GGGAGCATGTATTAGGATAT+TGG | 0.331818 | 8.3:-36676429 | MS.gene71226:CDS |
| CACTCTTGTGCCAAAATACT+TGG | 0.349067 | 8.3:-36677040 | MS.gene71226:CDS |
| TGAGTCCAATGGGACCCTTT+TGG | 0.353951 | 8.3:-36676450 | MS.gene71226:CDS |
| GTAATCATCCCTTTCTCTAA+TGG | 0.365334 | 8.3:+36676970 | None:intergenic |
| TATATCACCAACCACACCTT+TGG | 0.375797 | 8.3:+36676279 | None:intergenic |
| GACAAGATAAAACTCCTTGA+AGG | 0.386865 | 8.3:+36676902 | None:intergenic |
| CAAGTTAAGACCACATAGTT+GGG | 0.387955 | 8.3:-36676518 | MS.gene71226:CDS |
| ACACAATCACTGAAGAGAAA+TGG | 0.390713 | 8.3:-36676105 | MS.gene71226:CDS |
| CACAATCACTGAAGAGAAAT+GGG | 0.410038 | 8.3:-36676104 | MS.gene71226:CDS |
| TGATTGTTATCATGAATGTT+TGG | 0.420577 | 8.3:+36676769 | None:intergenic |
| AAGACTGGGAAATTGCCTTC+TGG | 0.423203 | 8.3:-36676211 | MS.gene71226:CDS |
| CAAACTTTGCCATTAGAGAA+AGG | 0.427827 | 8.3:-36676979 | MS.gene71226:CDS |
| TCCTAATACATGCTCCCAAA+AGG | 0.430142 | 8.3:+36676435 | None:intergenic |
| GCCAAAATCCTTGGTATTGG+TGG | 0.430614 | 8.3:+36676938 | None:intergenic |
| TATCAAAGACTCAACTTGTA+AGG | 0.438404 | 8.3:-36676599 | MS.gene71226:CDS |
| CTACGATTATATCTGTATCA+TGG | 0.444290 | 8.3:+36676863 | None:intergenic |
| TTTGCCAAAATCCTTGGTAT+TGG | 0.458620 | 8.3:+36676935 | None:intergenic |
| GTAGCTACCACTCCCAAATC+AGG | 0.473936 | 8.3:-36676844 | MS.gene71226:CDS |
| TCGTGGTTTGCCAAAATCCT+TGG | 0.479401 | 8.3:+36676929 | None:intergenic |
| TGCTCCCAAAAGGGTCCCAT+TGG | 0.483845 | 8.3:+36676445 | None:intergenic |
| TGTAGAGGAGTGAGTCCAAT+GGG | 0.487163 | 8.3:-36676460 | MS.gene71226:CDS |
| AAACTTTGCCATTAGAGAAA+GGG | 0.495208 | 8.3:-36676978 | MS.gene71226:CDS |
| TGTGTAGAGAAGAGCCTTGG+AGG | 0.501089 | 8.3:+36676649 | None:intergenic |
| AACTTGGAGACTAATAAGAC+TGG | 0.514423 | 8.3:-36676226 | MS.gene71226:CDS |
| AGATGTGTAGAGAAGAGCCT+TGG | 0.519657 | 8.3:+36676646 | None:intergenic |
| TACGATTATATCTGTATCAT+GGG | 0.520155 | 8.3:+36676864 | None:intergenic |
| GGGGATAACGAGTCTAGATC+AGG | 0.522817 | 8.3:+36676670 | None:intergenic |
| CCTAATACATGCTCCCAAAA+GGG | 0.526000 | 8.3:+36676436 | None:intergenic |
| CCTTGGTATTGGTGGACGTA+GGG | 0.537289 | 8.3:+36676946 | None:intergenic |
| ACAAGTTAAGACCACATAGT+TGG | 0.537480 | 8.3:-36676519 | MS.gene71226:CDS |
| GAAGAGAAATGGGCTAAACA+TGG | 0.549761 | 8.3:-36676094 | MS.gene71226:CDS |
| CTCCCAAATCAGGTACCACT+TGG | 0.552250 | 8.3:-36676834 | MS.gene71226:CDS |
| CAAACCACGAGAGACCTTCA+AGG | 0.557521 | 8.3:-36676916 | MS.gene71226:CDS |
| GTGTAGAGAAGAGCCTTGGA+GGG | 0.561070 | 8.3:+36676650 | None:intergenic |
| ATATTTCTTGCGGTTGAGCA+AGG | 0.563864 | 8.3:+36676792 | None:intergenic |
| GTAAAGGGTAAGTTCCAAGA+AGG | 0.564258 | 8.3:+36676711 | None:intergenic |
| TTCTTTCGTCGTGGCCAAGT+TGG | 0.564376 | 8.3:-36676172 | MS.gene71226:CDS |
| GAAGAATCCAAAGGTGTGGT+TGG | 0.575305 | 8.3:-36676286 | MS.gene71226:CDS |
| TCTCAGATGAAATGATTGAA+CGG | 0.595222 | 8.3:-36676132 | MS.gene71226:CDS |
| GGGAACACTTCCATTAGAAG+AGG | 0.598671 | 8.3:-36676497 | MS.gene71226:CDS |
| GAATGTTTGGATATTTCTTG+CGG | 0.599263 | 8.3:+36676782 | None:intergenic |
| TAAAGGGTAAGTTCCAAGAA+GGG | 0.605054 | 8.3:+36676712 | None:intergenic |
| AAGAAGGGAACAAGAGCATG+AGG | 0.605363 | 8.3:+36676727 | None:intergenic |
| TTGTAGAGGAGTGAGTCCAA+TGG | 0.609516 | 8.3:-36676461 | MS.gene71226:CDS |
| TGTTAATGCTTTGAGCCAAG+TGG | 0.610189 | 8.3:+36676819 | None:intergenic |
| TGAGGGTTGTTAGTAAGCAA+AGG | 0.612891 | 8.3:+36676745 | None:intergenic |
| AGTGGTACCTGATTTGGGAG+TGG | 0.613042 | 8.3:+36676837 | None:intergenic |
| GGAAGTGTTCCCCAACTATG+TGG | 0.617769 | 8.3:+36676508 | None:intergenic |
| AAGAGAAATGGGCTAAACAT+GGG | 0.620553 | 8.3:-36676093 | MS.gene71226:CDS |
| TGTAGAGAAGAGCCTTGGAG+GGG | 0.624064 | 8.3:+36676651 | None:intergenic |
| GCATGTATTAGGATATTGGA+AGG | 0.624163 | 8.3:-36676425 | MS.gene71226:CDS |
| TAGACTCGTTATCCCCTCCA+AGG | 0.624445 | 8.3:-36676663 | MS.gene71226:CDS |
| AACTCCTTGAAGGTCTCTCG+TGG | 0.624921 | 8.3:+36676912 | None:intergenic |
| CAAAGACTCAACTTGTAAGG+TGG | 0.630632 | 8.3:-36676596 | MS.gene71226:CDS |
| ACTTGGAGACTAATAAGACT+GGG | 0.632456 | 8.3:-36676225 | MS.gene71226:CDS |
| AGAAGAAGAATCCAAAGGTG+TGG | 0.632605 | 8.3:-36676290 | MS.gene71226:CDS |
| ACAAAAGAAGAAGAATCCAA+AGG | 0.648101 | 8.3:-36676295 | MS.gene71226:CDS |
| TGGCACAAGAGTGTTTGCCA+TGG | 0.653319 | 8.3:+36677050 | None:intergenic |
| AAGTTAAGACCACATAGTTG+GGG | 0.664111 | 8.3:-36676517 | MS.gene71226:CDS |
| CCCTACGTCCACCAATACCA+AGG | 0.664496 | 8.3:-36676946 | MS.gene71226:CDS |
| AGAAGGGAACAAGAGCATGA+GGG | 0.677902 | 8.3:+36676728 | None:intergenic |
| TCCTTGGTATTGGTGGACGT+AGG | 0.678023 | 8.3:+36676945 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATCTTTTTTAAAGTAAA+GGG | + | chr8.3:36676436-36676455 | None:intergenic | 10.0% |
| !!! | ATCTTTTTCAAATAAAAACT+AGG | + | chr8.3:36676789-36676808 | None:intergenic | 15.0% |
| !!! | GAATATCTTTTTTAAAGTAA+AGG | + | chr8.3:36676437-36676456 | None:intergenic | 15.0% |
| !!! | TCTTTTTCAAATAAAAACTA+GGG | + | chr8.3:36676788-36676807 | None:intergenic | 15.0% |
| ! | TACGATTATATCTGTATCAT+GGG | + | chr8.3:36676268-36676287 | None:intergenic | 25.0% |
| ! | TGATTGTTATCATGAATGTT+TGG | + | chr8.3:36676363-36676382 | None:intergenic | 25.0% |
| !! | AATAATATTTTCTTTCGTCG+TGG | - | chr8.3:36676948-36676967 | MS.gene71226:CDS | 25.0% |
| !! | GAAAAAGATTGCTAAGTTTT+TGG | - | chr8.3:36676800-36676819 | MS.gene71226:CDS | 25.0% |
| !! | GATTCTTCTTCTTTTGTAAA+TGG | + | chr8.3:36676831-36676850 | None:intergenic | 25.0% |
| !! | TCATATTCTTCCAAGTATTT+TGG | + | chr8.3:36676102-36676121 | None:intergenic | 25.0% |
| !!! | ATATTATTTTGTTCACCAGA+AGG | + | chr8.3:36676936-36676955 | None:intergenic | 25.0% |
| AAACTTTGCCATTAGAGAAA+GGG | - | chr8.3:36676151-36676170 | MS.gene71226:CDS | 30.0% | |
| ACAAAAGAAGAAGAATCCAA+AGG | - | chr8.3:36676834-36676853 | MS.gene71226:CDS | 30.0% | |
| CTACGATTATATCTGTATCA+TGG | + | chr8.3:36676269-36676288 | None:intergenic | 30.0% | |
| GAATGTTTGGATATTTCTTG+CGG | + | chr8.3:36676350-36676369 | None:intergenic | 30.0% | |
| GTTGAGTCTTTGATAGATTT+CGG | + | chr8.3:36676525-36676544 | None:intergenic | 30.0% | |
| TATCAAAGACTCAACTTGTA+AGG | - | chr8.3:36676530-36676549 | MS.gene71226:CDS | 30.0% | |
| TCTCAGATGAAATGATTGAA+CGG | - | chr8.3:36676997-36677016 | MS.gene71226:CDS | 30.0% | |
| !! | AATTTTTGCTATCTCCAACT+TGG | + | chr8.3:36676974-36676993 | None:intergenic | 30.0% |
| !!! | AGTGAAACAAAAGTGTCTTT+TGG | + | chr8.3:36676576-36676595 | None:intergenic | 30.0% |
| AACTTGGAGACTAATAAGAC+TGG | - | chr8.3:36676903-36676922 | MS.gene71226:CDS | 35.0% | |
| AAGTTAAGACCACATAGTTG+GGG | - | chr8.3:36676612-36676631 | MS.gene71226:CDS | 35.0% | |
| ACAAGTTAAGACCACATAGT+TGG | - | chr8.3:36676610-36676629 | MS.gene71226:CDS | 35.0% | |
| ACACAATCACTGAAGAGAAA+TGG | - | chr8.3:36677024-36677043 | MS.gene71226:CDS | 35.0% | |
| ACTTGGAGACTAATAAGACT+GGG | - | chr8.3:36676904-36676923 | MS.gene71226:CDS | 35.0% | |
| AGGATATTGGAAGGAAAGTT+TGG | - | chr8.3:36676713-36676732 | MS.gene71226:CDS | 35.0% | |
| CAAACTTTGCCATTAGAGAA+AGG | - | chr8.3:36676150-36676169 | MS.gene71226:CDS | 35.0% | |
| CAAGTTAAGACCACATAGTT+GGG | - | chr8.3:36676611-36676630 | MS.gene71226:CDS | 35.0% | |
| CACAATCACTGAAGAGAAAT+GGG | - | chr8.3:36677025-36677044 | MS.gene71226:CDS | 35.0% | |
| GACAAGATAAAACTCCTTGA+AGG | + | chr8.3:36676230-36676249 | None:intergenic | 35.0% | |
| GCATGTATTAGGATATTGGA+AGG | - | chr8.3:36676704-36676723 | MS.gene71226:CDS | 35.0% | |
| GTAATCATCCCTTTCTCTAA+TGG | + | chr8.3:36676162-36676181 | None:intergenic | 35.0% | |
| TAAAGGGTAAGTTCCAAGAA+GGG | + | chr8.3:36676420-36676439 | None:intergenic | 35.0% | |
| TTTGCCAAAATCCTTGGTAT+TGG | + | chr8.3:36676197-36676216 | None:intergenic | 35.0% | |
| !! | AAGAGAAATGGGCTAAACAT+GGG | - | chr8.3:36677036-36677055 | MS.gene71226:CDS | 35.0% |
| !! | TTTTGAGAAGATGAGCAACT+TGG | - | chr8.3:36676887-36676906 | MS.gene71226:CDS | 35.0% |
| AGAAGAAGAATCCAAAGGTG+TGG | - | chr8.3:36676839-36676858 | MS.gene71226:CDS | 40.0% | |
| ATATTTCTTGCGGTTGAGCA+AGG | + | chr8.3:36676340-36676359 | None:intergenic | 40.0% | |
| CAAAGACTCAACTTGTAAGG+TGG | - | chr8.3:36676533-36676552 | MS.gene71226:CDS | 40.0% | |
| CACTCTTGTGCCAAAATACT+TGG | - | chr8.3:36676089-36676108 | MS.gene71226:CDS | 40.0% | |
| CCTAATACATGCTCCCAAAA+GGG | + | chr8.3:36676696-36676715 | None:intergenic | 40.0% | |
| GTAAAGGGTAAGTTCCAAGA+AGG | + | chr8.3:36676421-36676440 | None:intergenic | 40.0% | |
| TATATCACCAACCACACCTT+TGG | + | chr8.3:36676853-36676872 | None:intergenic | 40.0% | |
| TCCTAATACATGCTCCCAAA+AGG | + | chr8.3:36676697-36676716 | None:intergenic | 40.0% | |
| TGAGGGTTGTTAGTAAGCAA+AGG | + | chr8.3:36676387-36676406 | None:intergenic | 40.0% | |
| ! | GCATTCGAGAGTTTTTGTAG+AGG | - | chr8.3:36676654-36676673 | MS.gene71226:CDS | 40.0% |
| ! | GGGAGCATGTATTAGGATAT+TGG | - | chr8.3:36676700-36676719 | MS.gene71226:CDS | 40.0% |
| ! | TCCACCAATACCAAGGATTT+TGG | - | chr8.3:36676190-36676209 | MS.gene71226:CDS | 40.0% |
| ! | TGTTAATGCTTTGAGCCAAG+TGG | + | chr8.3:36676313-36676332 | None:intergenic | 40.0% |
| !! | GAAGAGAAATGGGCTAAACA+TGG | - | chr8.3:36677035-36677054 | MS.gene71226:CDS | 40.0% |
| AAGACTGGGAAATTGCCTTC+TGG | - | chr8.3:36676918-36676937 | MS.gene71226:CDS | 45.0% | |
| AGATGTGTAGAGAAGAGCCT+TGG | + | chr8.3:36676486-36676505 | None:intergenic | 45.0% | |
| AGCCAAGTGGTACCTGATTT+GGG | + | chr8.3:36676300-36676319 | None:intergenic | 45.0% | |
| CTCTCGAATGCCTCTTCTAA+TGG | + | chr8.3:36676645-36676664 | None:intergenic | 45.0% | |
| GGGAACACTTCCATTAGAAG+AGG | - | chr8.3:36676632-36676651 | MS.gene71226:CDS | 45.0% | |
| TCATGCTCTTGTTCCCTTCT+TGG | - | chr8.3:36676404-36676423 | MS.gene71226:CDS | 45.0% | |
| TGTAGAGGAGTGAGTCCAAT+GGG | - | chr8.3:36676669-36676688 | MS.gene71226:CDS | 45.0% | |
| TTGTAGAGGAGTGAGTCCAA+TGG | - | chr8.3:36676668-36676687 | MS.gene71226:CDS | 45.0% | |
| ! | AAGAAGGGAACAAGAGCATG+AGG | + | chr8.3:36676405-36676424 | None:intergenic | 45.0% |
| ! | AGAAGGGAACAAGAGCATGA+GGG | + | chr8.3:36676404-36676423 | None:intergenic | 45.0% |
| ! | GAAGAATCCAAAGGTGTGGT+TGG | - | chr8.3:36676843-36676862 | MS.gene71226:CDS | 45.0% |
| ! | GCCAAAATCCTTGGTATTGG+TGG | + | chr8.3:36676194-36676213 | None:intergenic | 45.0% |
| ! | TCGTGGTTTGCCAAAATCCT+TGG | + | chr8.3:36676203-36676222 | None:intergenic | 45.0% |
| !! | CCCTTTTGGGAGCATGTATT+AGG | - | chr8.3:36676693-36676712 | MS.gene71226:CDS | 45.0% |
| AACTCCTTGAAGGTCTCTCG+TGG | + | chr8.3:36676220-36676239 | None:intergenic | 50.0% | |
| CAAACCACGAGAGACCTTCA+AGG | - | chr8.3:36676213-36676232 | MS.gene71226:CDS | 50.0% | |
| CTCCCAAATCAGGTACCACT+TGG | - | chr8.3:36676295-36676314 | MS.gene71226:CDS | 50.0% | |
| GAGCCAAGTGGTACCTGATT+TGG | + | chr8.3:36676301-36676320 | None:intergenic | 50.0% | |
| GGGGATAACGAGTCTAGATC+AGG | + | chr8.3:36676462-36676481 | None:intergenic | 50.0% | |
| GTAGCTACCACTCCCAAATC+AGG | - | chr8.3:36676285-36676304 | MS.gene71226:CDS | 50.0% | |
| GTGTAGAGAAGAGCCTTGGA+GGG | + | chr8.3:36676482-36676501 | None:intergenic | 50.0% | |
| TAGACTCGTTATCCCCTCCA+AGG | - | chr8.3:36676466-36676485 | MS.gene71226:CDS | 50.0% | |
| TGTAGAGAAGAGCCTTGGAG+GGG | + | chr8.3:36676481-36676500 | None:intergenic | 50.0% | |
| TGTGTAGAGAAGAGCCTTGG+AGG | + | chr8.3:36676483-36676502 | None:intergenic | 50.0% | |
| TTCTTTCGTCGTGGCCAAGT+TGG | - | chr8.3:36676957-36676976 | MS.gene71226:CDS | 50.0% | |
| ! | GAGTCCAATGGGACCCTTTT+GGG | - | chr8.3:36676680-36676699 | MS.gene71226:CDS | 50.0% |
| ! | TGAGTCCAATGGGACCCTTT+TGG | - | chr8.3:36676679-36676698 | MS.gene71226:CDS | 50.0% |
| !! | AGTGGTACCTGATTTGGGAG+TGG | + | chr8.3:36676295-36676314 | None:intergenic | 50.0% |
| !! | CCTTGGTATTGGTGGACGTA+GGG | + | chr8.3:36676186-36676205 | None:intergenic | 50.0% |
| !! | GGAAGTGTTCCCCAACTATG+TGG | + | chr8.3:36676624-36676643 | None:intergenic | 50.0% |
| !! | TCCTTGGTATTGGTGGACGT+AGG | + | chr8.3:36676187-36676206 | None:intergenic | 50.0% |
| CCCTACGTCCACCAATACCA+AGG | - | chr8.3:36676183-36676202 | MS.gene71226:CDS | 55.0% | |
| TGCTCCCAAAAGGGTCCCAT+TGG | + | chr8.3:36676687-36676706 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 36676081 | 36677070 | 36676081 | ID=MS.gene71226 |
| chr8.3 | mRNA | 36676081 | 36677070 | 36676081 | ID=MS.gene71226.t1;Parent=MS.gene71226 |
| chr8.3 | exon | 36676081 | 36677070 | 36676081 | ID=MS.gene71226.t1.exon1;Parent=MS.gene71226.t1 |
| chr8.3 | CDS | 36676081 | 36677070 | 36676081 | ID=cds.MS.gene71226.t1;Parent=MS.gene71226.t1 |
| Gene Sequence |
| Protein sequence |
