Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71309.t1 | XP_013467074.1 | 98.5 | 397 | 6 | 0 | 1 | 397 | 40 | 436 | 3.10E-219 | 770.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71309.t1 | Q9FNL7 | 70.6 | 398 | 115 | 2 | 1 | 397 | 40 | 436 | 1.3e-157 | 557.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71309.t1 | A0A072VGD9 | 98.5 | 397 | 6 | 0 | 1 | 397 | 40 | 436 | 2.3e-219 | 770.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053354 | MS.gene71309 | 0.98388 | 5.75E-159 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 92 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGTTCATATAGTTCTTT+AGG | 0.172531 | 1.4:+26527960 | None:intergenic |
| ACGCCTACCTTGGCCGTTAT+TGG | 0.203711 | 1.4:-26528954 | MS.gene71309:CDS |
| TTTGAGAGAATGGCTTATTA+TGG | 0.210968 | 1.4:-26529105 | MS.gene71309:CDS |
| ATTTGGATCACTCCAATATT+AGG | 0.239092 | 1.4:-26528991 | MS.gene71309:CDS |
| GTCTCCTCTACATGTGTAAC+TGG | 0.243014 | 1.4:+26526619 | None:intergenic |
| CATAATTCATATAGTGATTA+TGG | 0.284425 | 1.4:-26526323 | MS.gene71309:CDS |
| AGAACTATATGAACTTGATT+TGG | 0.287269 | 1.4:-26527955 | MS.gene71309:CDS |
| GATCATTCTTATCATTTGTT+TGG | 0.294014 | 1.4:+26526597 | None:intergenic |
| CTAAAACAGAATTTGCAAAA+AGG | 0.325782 | 1.4:+26528177 | None:intergenic |
| GGATGTTCAGCATCTTTATT+GGG | 0.330214 | 1.4:-26528202 | MS.gene71309:CDS |
| AAAATTCCACCAGCAAGTTT+AGG | 0.331725 | 1.4:-26526472 | MS.gene71309:CDS |
| AGGGAGTCCCTTCACTAAAA+TGG | 0.333057 | 1.4:-26528036 | MS.gene71309:CDS |
| CCAATTGGGTTGGTACCATT+TGG | 0.335195 | 1.4:-26529008 | MS.gene71309:CDS |
| TGGATGTTCAGCATCTTTAT+TGG | 0.338681 | 1.4:-26528203 | MS.gene71309:CDS |
| CAAGTTCATATAGTTCTTTA+GGG | 0.338874 | 1.4:+26527961 | None:intergenic |
| TGCTTCCTTTATCTACCTAT+TGG | 0.339032 | 1.4:-26528920 | MS.gene71309:intron |
| GCAACATAAGCACCTAATAT+TGG | 0.342872 | 1.4:+26528979 | None:intergenic |
| CAACTTTCACTGAAAGATAT+AGG | 0.345759 | 1.4:-26526294 | MS.gene71309:CDS |
| TTGAGAGAATGGCTTATTAT+GGG | 0.354991 | 1.4:-26529104 | MS.gene71309:CDS |
| CTTCTACCAATGTCACCAAT+TGG | 0.359761 | 1.4:-26529023 | MS.gene71309:CDS |
| ATAAACTCTCATTCTTCAAT+TGG | 0.378779 | 1.4:-26528226 | MS.gene71309:CDS |
| GGTTATGCACTTCCAACTCT+TGG | 0.392524 | 1.4:-26528122 | MS.gene71309:CDS |
| GATAATGTGGGTTGGACTCT+TGG | 0.393984 | 1.4:-26528143 | MS.gene71309:CDS |
| TCTTTAGGGTCACTAGGAAT+AGG | 0.396153 | 1.4:+26527975 | None:intergenic |
| ACATACCAATAGGTAGATAA+AGG | 0.397338 | 1.4:+26528915 | None:intergenic |
| ATTAATGTAGTAGCCATGAT+TGG | 0.405581 | 1.4:+26526574 | None:intergenic |
| GCACCAATGGTGGAAATGTT+AGG | 0.424088 | 1.4:+26528287 | None:intergenic |
| TTGTAAAGATTATGCAAAGA+TGG | 0.426548 | 1.4:-26526396 | MS.gene71309:CDS |
| TTCCTATGCCCATCCTTTGA+AGG | 0.429082 | 1.4:+26526347 | None:intergenic |
| ATTTGAGCAATCATTGTACT+AGG | 0.430351 | 1.4:+26526550 | None:intergenic |
| TTACAGCTAGTAGTGTTCTA+TGG | 0.437692 | 1.4:-26528350 | MS.gene71309:CDS |
| TTCTACCAATGTCACCAATT+GGG | 0.441799 | 1.4:-26529022 | MS.gene71309:CDS |
| AACTCTCATTCTTCAATTGG+TGG | 0.444499 | 1.4:-26528223 | MS.gene71309:CDS |
| GTATGAGGTATTTGAGAGAA+TGG | 0.453573 | 1.4:-26529115 | MS.gene71309:CDS |
| ACCACCTGAGTGTCATGAAA+TGG | 0.453752 | 1.4:-26528402 | MS.gene71309:CDS |
| TTGTGGCTGCTATGAAGAAA+TGG | 0.454963 | 1.4:-26528004 | MS.gene71309:CDS |
| CCAAATGGTACCAACCCAAT+TGG | 0.470302 | 1.4:+26529008 | None:intergenic |
| TGAAGGAGAGTAATTCCTCT+AGG | 0.480380 | 1.4:+26526364 | None:intergenic |
| TACACTCTAGCAGTAGGAAC+AGG | 0.482514 | 1.4:-26528320 | MS.gene71309:CDS |
| TATAGACATAAAGTACCTAC+AGG | 0.484411 | 1.4:-26528056 | MS.gene71309:CDS |
| TATGTTGCTGACGCCTACCT+TGG | 0.492497 | 1.4:-26528964 | MS.gene71309:CDS |
| TTGGAAGAGTATGCAAAGAA+AGG | 0.494172 | 1.4:-26527936 | MS.gene71309:CDS |
| ACAAATGTACCTAAACTTGC+TGG | 0.498006 | 1.4:+26526463 | None:intergenic |
| ACAACACTTGATAGAGGCAT+TGG | 0.500358 | 1.4:-26526502 | MS.gene71309:CDS |
| GATAAGAATGATCCCAATCA+TGG | 0.502771 | 1.4:-26526587 | MS.gene71309:CDS |
| AGTCTATATACAAGATAATG+TGG | 0.504069 | 1.4:-26528156 | MS.gene71309:CDS |
| ATCAAATTGATCAGCACCAA+TGG | 0.509830 | 1.4:+26528274 | None:intergenic |
| GAAGGAGAGTAATTCCTCTA+GGG | 0.517835 | 1.4:+26526365 | None:intergenic |
| AAGCCTAACATTTCCACCAT+TGG | 0.518336 | 1.4:-26528290 | MS.gene71309:CDS |
| TATAGTTCTTTAGGGTCACT+AGG | 0.526463 | 1.4:+26527969 | None:intergenic |
| CTTATACCTCAATGTGGGAG+TGG | 0.531336 | 1.4:+26527896 | None:intergenic |
| AATTACTCTCCTTCAAAGGA+TGG | 0.536918 | 1.4:-26526356 | MS.gene71309:CDS |
| TCCCTTCACTAAAATGGCTA+AGG | 0.542023 | 1.4:-26528030 | MS.gene71309:CDS |
| TTAATGTAGTAGCCATGATT+GGG | 0.543126 | 1.4:+26526575 | None:intergenic |
| GGTACTTTATGTCTATAGAA+TGG | 0.550764 | 1.4:+26528062 | None:intergenic |
| CAACACTTGATAGAGGCATT+GGG | 0.555650 | 1.4:-26526501 | MS.gene71309:CDS |
| TTGATTCCACTCCCACATTG+AGG | 0.555903 | 1.4:-26527902 | MS.gene71309:intron |
| TTAATAAAGAAGCTTCATCA+AGG | 0.556770 | 1.4:-26529057 | MS.gene71309:CDS |
| GATATTGCAAGTCCAAGAGT+TGG | 0.562877 | 1.4:+26528110 | None:intergenic |
| AAGACTAATTCAAGTACTAG+TGG | 0.564192 | 1.4:-26526655 | MS.gene71309:CDS |
| ACCAATGTCACCAATTGGGT+TGG | 0.565849 | 1.4:-26529018 | MS.gene71309:CDS |
| TCTTGACACATGCCTTGTTG+AGG | 0.569147 | 1.4:+26526674 | None:intergenic |
| ACCAACCCAATTGGTGACAT+TGG | 0.570728 | 1.4:+26529017 | None:intergenic |
| CTCCTTCAAAGGATGGGCAT+AGG | 0.570734 | 1.4:-26526349 | MS.gene71309:CDS |
| TAATATTGGAGTGATCCAAA+TGG | 0.571433 | 1.4:+26528993 | None:intergenic |
| CAGTAACAAAGGTCCAATAA+CGG | 0.571576 | 1.4:+26528941 | None:intergenic |
| GAGGAATTACTCTCCTTCAA+AGG | 0.576375 | 1.4:-26526360 | MS.gene71309:CDS |
| AATGTACCTAAACTTGCTGG+TGG | 0.578804 | 1.4:+26526466 | None:intergenic |
| ATATACAAGATAATGTGGGT+TGG | 0.583558 | 1.4:-26528151 | MS.gene71309:CDS |
| TCTCCTCTACATGTGTAACT+GGG | 0.590294 | 1.4:+26526620 | None:intergenic |
| ATTACTCTCCTTCAAAGGAT+GGG | 0.590754 | 1.4:-26526355 | MS.gene71309:CDS |
| CAAGGAACAACACTTGATAG+AGG | 0.596087 | 1.4:-26526508 | MS.gene71309:CDS |
| GTCTATATACAAGATAATGT+GGG | 0.599062 | 1.4:-26528155 | MS.gene71309:CDS |
| AATACACTATTTGTGAAGCA+AGG | 0.599414 | 1.4:-26526526 | MS.gene71309:CDS |
| GGTCCAATAACGGCCAAGGT+AGG | 0.599634 | 1.4:+26528951 | None:intergenic |
| AAATTGATCAGCACCAATGG+TGG | 0.600096 | 1.4:+26528277 | None:intergenic |
| AATGGATGTTACAAAATGCA+AGG | 0.601334 | 1.4:-26528384 | MS.gene71309:CDS |
| CAAAGGTCCAATAACGGCCA+AGG | 0.604327 | 1.4:+26528947 | None:intergenic |
| GATAAAGGAAGCAGTAACAA+AGG | 0.605026 | 1.4:+26528930 | None:intergenic |
| TAAAATGGCTAAGGTCATTG+TGG | 0.611474 | 1.4:-26528021 | MS.gene71309:CDS |
| ACTCTAGCAGTAGGAACAGG+TGG | 0.614419 | 1.4:-26528317 | MS.gene71309:CDS |
| GCACTCTACACTCTAGCAGT+AGG | 0.615235 | 1.4:-26528326 | MS.gene71309:CDS |
| TCCATTTCATGACACTCAGG+TGG | 0.620788 | 1.4:+26528401 | None:intergenic |
| GAACACTACTAGCTGTAATG+TGG | 0.621214 | 1.4:+26528355 | None:intergenic |
| ATGCCCAGTTACACATGTAG+AGG | 0.628339 | 1.4:-26526623 | MS.gene71309:CDS |
| ACATCCATTTCATGACACTC+AGG | 0.634209 | 1.4:+26528398 | None:intergenic |
| TTAGTGAAGGGACTCCCTGT+AGG | 0.634253 | 1.4:+26528041 | None:intergenic |
| TGGAACTTATACCTCAATGT+GGG | 0.647517 | 1.4:+26527891 | None:intergenic |
| ATGGAACTTATACCTCAATG+TGG | 0.655784 | 1.4:+26527890 | None:intergenic |
| ACTAATTCAAGTACTAGTGG+AGG | 0.670493 | 1.4:-26526652 | MS.gene71309:CDS |
| TGTATGCAGATTCCTCAACA+AGG | 0.703011 | 1.4:-26526686 | MS.gene71309:intron |
| ATAGACATAAAGTACCTACA+GGG | 0.722644 | 1.4:-26528055 | MS.gene71309:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAATTCTAAATATTTAT+AGG | - | chr1.4:26526855-26526874 | MS.gene71309:intron | 10.0% |
| !!! | AATATCTATCATAATATTTT+TGG | - | chr1.4:26527313-26527332 | MS.gene71309:intron | 10.0% |
| !!! | GAAAAATGAAATTTTAATAT+TGG | - | chr1.4:26528179-26528198 | MS.gene71309:CDS | 10.0% |
| !!! | TATTACTTATTTTTTAATTG+TGG | - | chr1.4:26528466-26528485 | MS.gene71309:intron | 10.0% |
| !! | AAATACTCATAAAAACTTAA+TGG | - | chr1.4:26527971-26527990 | MS.gene71309:CDS | 15.0% |
| !! | TGTATTTGTGAAAAAAAAAT+AGG | + | chr1.4:26527555-26527574 | None:intergenic | 15.0% |
| !!! | AAATGTGATTTTATTTTGTA+AGG | - | chr1.4:26526826-26526845 | MS.gene71309:intron | 15.0% |
| !!! | AATACATATGGAAAATTTTA+CGG | + | chr1.4:26526700-26526719 | None:intergenic | 15.0% |
| !!! | AGTATGATTTTATTTTTTAG+AGG | + | chr1.4:26526608-26526627 | None:intergenic | 15.0% |
| !!! | GTATGATTTTATTTTTTAGA+GGG | + | chr1.4:26526607-26526626 | None:intergenic | 15.0% |
| !!! | TTATTATTTTTCTTAAGTTG+CGG | + | chr1.4:26527926-26527945 | None:intergenic | 15.0% |
| !! | AAAATAGGGTTATATTTGAA+AGG | + | chr1.4:26526899-26526918 | None:intergenic | 20.0% |
| !! | AAATAGGGTTATATTTGAAA+GGG | + | chr1.4:26526898-26526917 | None:intergenic | 20.0% |
| !! | AACAATGATAGTATAAGTTT+AGG | + | chr1.4:26528669-26528688 | None:intergenic | 20.0% |
| !! | AATAGGTATTAAATCAAACA+TGG | + | chr1.4:26527538-26527557 | None:intergenic | 20.0% |
| !! | ATAAATTAAGACATACCAAT+AGG | + | chr1.4:26526504-26526523 | None:intergenic | 20.0% |
| !! | CATAATTCATATAGTGATTA+TGG | - | chr1.4:26529083-26529102 | MS.gene71309:CDS | 20.0% |
| !! | CATAGACTGTATTAAAAATA+TGG | + | chr1.4:26528150-26528169 | None:intergenic | 20.0% |
| !! | TAAAACAGAATTTGCAAAAA+GGG | + | chr1.4:26527231-26527250 | None:intergenic | 20.0% |
| !! | TATAAGTTTAGGAAAATTTG+AGG | + | chr1.4:26528658-26528677 | None:intergenic | 20.0% |
| !! | TTATTATCTAGTGTGAAATA+GGG | - | chr1.4:26526520-26526539 | MS.gene71309:CDS | 20.0% |
| !! | TTTATTATCTAGTGTGAAAT+AGG | - | chr1.4:26526519-26526538 | MS.gene71309:CDS | 20.0% |
| !!! | AATGCCTCAAATTTTTTTTT+TGG | - | chr1.4:26528551-26528570 | MS.gene71309:intron | 20.0% |
| !!! | ATATAACCCTATTTTATTGT+TGG | - | chr1.4:26526904-26526923 | MS.gene71309:intron | 20.0% |
| !!! | TATAACCCTATTTTATTGTT+GGG | - | chr1.4:26526905-26526924 | MS.gene71309:intron | 20.0% |
| !!! | TTTGACAGAAAATTTTTACA+GGG | + | chr1.4:26526760-26526779 | None:intergenic | 20.0% |
| !!! | TTTTGACAGAAAATTTTTAC+AGG | + | chr1.4:26526761-26526780 | None:intergenic | 20.0% |
| ! | AAAAGAAAATGCATGTCATT+CGG | - | chr1.4:26527748-26527767 | MS.gene71309:intron | 25.0% |
| ! | ACAAGGACTAAAAATACATA+TGG | + | chr1.4:26526712-26526731 | None:intergenic | 25.0% |
| ! | ACCACCAAAAAAAAAATTTG+AGG | + | chr1.4:26528558-26528577 | None:intergenic | 25.0% |
| ! | AGAACTATATGAACTTGATT+TGG | - | chr1.4:26527451-26527470 | MS.gene71309:intron | 25.0% |
| ! | AGTCTATATACAAGATAATG+TGG | - | chr1.4:26527250-26527269 | MS.gene71309:intron | 25.0% |
| ! | ATAAACTCTCATTCTTCAAT+TGG | - | chr1.4:26527180-26527199 | MS.gene71309:intron | 25.0% |
| ! | ATTCGACTAAGTTTCAATTA+AGG | - | chr1.4:26527601-26527620 | MS.gene71309:intron | 25.0% |
| ! | CAAGTTCATATAGTTCTTTA+GGG | + | chr1.4:26527448-26527467 | None:intergenic | 25.0% |
| ! | CTAAAACAGAATTTGCAAAA+AGG | + | chr1.4:26527232-26527251 | None:intergenic | 25.0% |
| ! | GAAAGGGTTAATTAAGTAAA+TGG | + | chr1.4:26526882-26526901 | None:intergenic | 25.0% |
| ! | GATCATTCTTATCATTTGTT+TGG | + | chr1.4:26528812-26528831 | None:intergenic | 25.0% |
| ! | GTCTATATACAAGATAATGT+GGG | - | chr1.4:26527251-26527270 | MS.gene71309:intron | 25.0% |
| ! | TCAAGTTCATATAGTTCTTT+AGG | + | chr1.4:26527449-26527468 | None:intergenic | 25.0% |
| ! | TTAATAAAGAAGCTTCATCA+AGG | - | chr1.4:26526349-26526368 | MS.gene71309:CDS | 25.0% |
| ! | TTAATACAGTCTATGTTGTT+GGG | - | chr1.4:26528155-26528174 | MS.gene71309:CDS | 25.0% |
| ! | TTGTAAAGATTATGCAAAGA+TGG | - | chr1.4:26529010-26529029 | MS.gene71309:CDS | 25.0% |
| ! | TTTAATACAGTCTATGTTGT+TGG | - | chr1.4:26528154-26528173 | MS.gene71309:CDS | 25.0% |
| !! | ACATTTTCCTTTAGCATTTT+AGG | + | chr1.4:26526793-26526812 | None:intergenic | 25.0% |
| !! | ATAGATGTTATGTTGGTAAA+TGG | - | chr1.4:26528527-26528546 | MS.gene71309:intron | 25.0% |
| !! | CATTTTCCTTTAGCATTTTA+GGG | + | chr1.4:26526792-26526811 | None:intergenic | 25.0% |
| !! | TACATACGGAAAATTTTACA+AGG | + | chr1.4:26526669-26526688 | None:intergenic | 25.0% |
| !! | TGTTGAAGGAAAATTTTACA+AGG | + | chr1.4:26526729-26526748 | None:intergenic | 25.0% |
| !! | TTACGGACTAAAAATACATA+CGG | + | chr1.4:26526683-26526702 | None:intergenic | 25.0% |
| !!! | AAACCAAATGAGATTTTTTG+CGG | + | chr1.4:26527829-26527848 | None:intergenic | 25.0% |
| !!! | TCTATCATAATATTTTTGGC+AGG | - | chr1.4:26527317-26527336 | MS.gene71309:intron | 25.0% |
| AAACCGCAAAAAATCTCATT+TGG | - | chr1.4:26527823-26527842 | MS.gene71309:intron | 30.0% | |
| AAGACTAATTCAAGTACTAG+TGG | - | chr1.4:26528751-26528770 | MS.gene71309:intron | 30.0% | |
| AATACACTATTTGTGAAGCA+AGG | - | chr1.4:26528880-26528899 | MS.gene71309:intron | 30.0% | |
| AATGGATGTTACAAAATGCA+AGG | - | chr1.4:26527022-26527041 | MS.gene71309:intron | 30.0% | |
| ACAGGGATTAAAAATGTTGA+AGG | + | chr1.4:26526743-26526762 | None:intergenic | 30.0% | |
| ACATACCAATAGGTAGATAA+AGG | + | chr1.4:26526494-26526513 | None:intergenic | 30.0% | |
| ATATACAAGATAATGTGGGT+TGG | - | chr1.4:26527255-26527274 | MS.gene71309:intron | 30.0% | |
| ATTAATGTAGTAGCCATGAT+TGG | + | chr1.4:26528835-26528854 | None:intergenic | 30.0% | |
| ATTCAAATGTGACCTCAAAT+TGG | - | chr1.4:26526934-26526953 | MS.gene71309:intron | 30.0% | |
| ATTGGCCCAACAATAAAATA+GGG | + | chr1.4:26526913-26526932 | None:intergenic | 30.0% | |
| ATTTGAGCAATCATTGTACT+AGG | + | chr1.4:26528859-26528878 | None:intergenic | 30.0% | |
| ATTTGGATCACTCCAATATT+AGG | - | chr1.4:26526415-26526434 | MS.gene71309:CDS | 30.0% | |
| CAACTAGATAGATGTTATGT+TGG | - | chr1.4:26528520-26528539 | MS.gene71309:intron | 30.0% | |
| CAACTTTCACTGAAAGATAT+AGG | - | chr1.4:26529112-26529131 | MS.gene71309:CDS | 30.0% | |
| CAATTAAGGACAAATCATTC+AGG | - | chr1.4:26527615-26527634 | MS.gene71309:intron | 30.0% | |
| GACAATGCATAATATATGCA+GGG | + | chr1.4:26528599-26528618 | None:intergenic | 30.0% | |
| GCAAAAAATCTCATTTGGTT+TGG | - | chr1.4:26527828-26527847 | MS.gene71309:intron | 30.0% | |
| GGTACTTTATGTCTATAGAA+TGG | + | chr1.4:26527347-26527366 | None:intergenic | 30.0% | |
| TAATATTGGAGTGATCCAAA+TGG | + | chr1.4:26526416-26526435 | None:intergenic | 30.0% | |
| TATTAAACCTCCAATTCCTA+GGG | + | chr1.4:26527729-26527748 | None:intergenic | 30.0% | |
| TGCTAAAGGAAAATGTTACA+TGG | - | chr1.4:26526797-26526816 | MS.gene71309:intron | 30.0% | |
| TTAATGTAGTAGCCATGATT+GGG | + | chr1.4:26528834-26528853 | None:intergenic | 30.0% | |
| TTATTAAACCTCCAATTCCT+AGG | + | chr1.4:26527730-26527749 | None:intergenic | 30.0% | |
| TTGAGAGAATGGCTTATTAT+GGG | - | chr1.4:26526302-26526321 | MS.gene71309:CDS | 30.0% | |
| TTTGAGAGAATGGCTTATTA+TGG | - | chr1.4:26526301-26526320 | MS.gene71309:CDS | 30.0% | |
| TTTGTCTACGTGACATATAT+AGG | + | chr1.4:26527954-26527973 | None:intergenic | 30.0% | |
| ! | AGATAAAAAAGCATGTGGTT+CGG | + | chr1.4:26528370-26528389 | None:intergenic | 30.0% |
| ! | ATAGACATAAAGTACCTACA+GGG | - | chr1.4:26527351-26527370 | MS.gene71309:intron | 30.0% |
| ! | TATAGACATAAAGTACCTAC+AGG | - | chr1.4:26527350-26527369 | MS.gene71309:intron | 30.0% |
| ! | TTTTGTCCCTAAAATGCTAA+AGG | - | chr1.4:26526783-26526802 | MS.gene71309:intron | 30.0% |
| !! | ATTTTTCTTAAGTTGCGGTT+TGG | + | chr1.4:26527921-26527940 | None:intergenic | 30.0% |
| !!! | AATGAGATTTTTTGCGGTTT+CGG | + | chr1.4:26527823-26527842 | None:intergenic | 30.0% |
| !!! | AATTTTTTTTTTGGTGGTCG+AGG | - | chr1.4:26528560-26528579 | MS.gene71309:intron | 30.0% |
| !!! | CAATTTTTTACTCAACCACA+TGG | - | chr1.4:26527863-26527882 | MS.gene71309:intron | 30.0% |
| !!! | GCCTCAAATTTTTTTTTTGG+TGG | - | chr1.4:26528554-26528573 | MS.gene71309:intron | 30.0% |
| !!! | TGCTTTTTTATCTCACGATT+AGG | - | chr1.4:26528377-26528396 | MS.gene71309:CDS | 30.0% |
| AAAATTCCACCAGCAAGTTT+AGG | - | chr1.4:26528934-26528953 | MS.gene71309:CDS | 35.0% | |
| AAATCGCAAACAAAACCATG+TGG | + | chr1.4:26527881-26527900 | None:intergenic | 35.0% | |
| AACTCTCATTCTTCAATTGG+TGG | - | chr1.4:26527183-26527202 | MS.gene71309:intron | 35.0% | |
| AATTACTCTCCTTCAAAGGA+TGG | - | chr1.4:26529050-26529069 | MS.gene71309:CDS | 35.0% | |
| ACAAATGTACCTAAACTTGC+TGG | + | chr1.4:26528946-26528965 | None:intergenic | 35.0% | |
| ACTAATTCAAGTACTAGTGG+AGG | - | chr1.4:26528754-26528773 | MS.gene71309:intron | 35.0% | |
| ATCAAATTGATCAGCACCAA+TGG | + | chr1.4:26527135-26527154 | None:intergenic | 35.0% | |
| ATGGAACTTATACCTCAATG+TGG | + | chr1.4:26527519-26527538 | None:intergenic | 35.0% | |
| ATGTCTTGTGTTGTATGCTA+GGG | - | chr1.4:26527772-26527791 | MS.gene71309:intron | 35.0% | |
| ATTACTCTCCTTCAAAGGAT+GGG | - | chr1.4:26529051-26529070 | MS.gene71309:CDS | 35.0% | |
| CAAACCAAATCAATGCAACT+TGG | + | chr1.4:26528317-26528336 | None:intergenic | 35.0% | |
| CAAATCAATGCAACTTGGAT+TGG | + | chr1.4:26528312-26528331 | None:intergenic | 35.0% | |
| CAGTAACAAAGGTCCAATAA+CGG | + | chr1.4:26526468-26526487 | None:intergenic | 35.0% | |
| CATTGGCCCAACAATAAAAT+AGG | + | chr1.4:26526914-26526933 | None:intergenic | 35.0% | |
| GAAAGAGGACTCTAGTAAAT+TGG | + | chr1.4:26527707-26527726 | None:intergenic | 35.0% | |
| GATAAAGGAAGCAGTAACAA+AGG | + | chr1.4:26526479-26526498 | None:intergenic | 35.0% | |
| GATAAGAATGATCCCAATCA+TGG | - | chr1.4:26528819-26528838 | MS.gene71309:intron | 35.0% | |
| GCAACATAAGCACCTAATAT+TGG | + | chr1.4:26526430-26526449 | None:intergenic | 35.0% | |
| GGACAATGCATAATATATGC+AGG | + | chr1.4:26528600-26528619 | None:intergenic | 35.0% | |
| GGATGTTCAGCATCTTTATT+GGG | - | chr1.4:26527204-26527223 | MS.gene71309:intron | 35.0% | |
| TAAAATGGCTAAGGTCATTG+TGG | - | chr1.4:26527385-26527404 | MS.gene71309:intron | 35.0% | |
| TATGTCTTGTGTTGTATGCT+AGG | - | chr1.4:26527771-26527790 | MS.gene71309:intron | 35.0% | |
| TGAAACTTAGTCGAATCACT+TGG | + | chr1.4:26527597-26527616 | None:intergenic | 35.0% | |
| TGAGGTCACATTTGAATCAT+TGG | + | chr1.4:26526931-26526950 | None:intergenic | 35.0% | |
| TGCTTCCTTTATCTACCTAT+TGG | - | chr1.4:26526486-26526505 | MS.gene71309:CDS | 35.0% | |
| TGGAACTTATACCTCAATGT+GGG | + | chr1.4:26527518-26527537 | None:intergenic | 35.0% | |
| TGGACTTATCATGTCAAGTT+TGG | - | chr1.4:26528486-26528505 | MS.gene71309:intron | 35.0% | |
| TGGATGTTCAGCATCTTTAT+TGG | - | chr1.4:26527203-26527222 | MS.gene71309:intron | 35.0% | |
| TTACAGCTAGTAGTGTTCTA+TGG | - | chr1.4:26527056-26527075 | MS.gene71309:intron | 35.0% | |
| TTCTACCAATGTCACCAATT+GGG | - | chr1.4:26526384-26526403 | MS.gene71309:CDS | 35.0% | |
| ! | GTATGAGGTATTTGAGAGAA+TGG | - | chr1.4:26526291-26526310 | MS.gene71309:CDS | 35.0% |
| ! | TCGTGAGATAAAAAAGCATG+TGG | + | chr1.4:26528375-26528394 | None:intergenic | 35.0% |
| ! | TGGTAAGTAAAGGTTGGTTA+AGG | + | chr1.4:26527672-26527691 | None:intergenic | 35.0% |
| ! | TTGGAAGAGTATGCAAAGAA+AGG | - | chr1.4:26527470-26527489 | MS.gene71309:intron | 35.0% |
| !! | ACCTTAGCCATTTTAGTGAA+GGG | + | chr1.4:26527380-26527399 | None:intergenic | 35.0% |
| !! | CAAGTTGCATTGATTTGGTT+TGG | - | chr1.4:26528315-26528334 | MS.gene71309:CDS | 35.0% |
| !! | CAATCCAAGTTGCATTGATT+TGG | - | chr1.4:26528310-26528329 | MS.gene71309:CDS | 35.0% |
| !! | TATAGTTCTTTAGGGTCACT+AGG | + | chr1.4:26527440-26527459 | None:intergenic | 35.0% |
| !!! | ATTTTTTGCGGTTTCGGTTT+GGG | + | chr1.4:26527817-26527836 | None:intergenic | 35.0% |
| AAATGTGACCTCAAATTGGC+AGG | - | chr1.4:26526938-26526957 | MS.gene71309:intron | 40.0% | |
| AAATTGATCAGCACCAATGG+TGG | + | chr1.4:26527132-26527151 | None:intergenic | 40.0% | |
| AAGCCTAACATTTCCACCAT+TGG | - | chr1.4:26527116-26527135 | MS.gene71309:intron | 40.0% | |
| AATGTGACCTCAAATTGGCA+GGG | - | chr1.4:26526939-26526958 | MS.gene71309:intron | 40.0% | |
| ACATCCATTTCATGACACTC+AGG | + | chr1.4:26527011-26527030 | None:intergenic | 40.0% | |
| CAAGGAACAACACTTGATAG+AGG | - | chr1.4:26528898-26528917 | MS.gene71309:intron | 40.0% | |
| CTTCTACCAATGTCACCAAT+TGG | - | chr1.4:26526383-26526402 | MS.gene71309:CDS | 40.0% | |
| GAACACTACTAGCTGTAATG+TGG | + | chr1.4:26527054-26527073 | None:intergenic | 40.0% | |
| GAAGGAGAGTAATTCCTCTA+GGG | + | chr1.4:26529044-26529063 | None:intergenic | 40.0% | |
| GAGGAATTACTCTCCTTCAA+AGG | - | chr1.4:26529046-26529065 | MS.gene71309:CDS | 40.0% | |
| GATATTGCAAGTCCAAGAGT+TGG | + | chr1.4:26527299-26527318 | None:intergenic | 40.0% | |
| TCCCTTCACTAAAATGGCTA+AGG | - | chr1.4:26527376-26527395 | MS.gene71309:intron | 40.0% | |
| TCTCCTCTACATGTGTAACT+GGG | + | chr1.4:26528789-26528808 | None:intergenic | 40.0% | |
| TGAAGGAGAGTAATTCCTCT+AGG | + | chr1.4:26529045-26529064 | None:intergenic | 40.0% | |
| TGTATGCAGATTCCTCAACA+AGG | - | chr1.4:26528720-26528739 | MS.gene71309:intron | 40.0% | |
| TGTCTTGTGTTGTATGCTAG+GGG | - | chr1.4:26527773-26527792 | MS.gene71309:intron | 40.0% | |
| TTGCCATGTTGCATTCAGTA+GGG | + | chr1.4:26528441-26528460 | None:intergenic | 40.0% | |
| TTGTGGCTGCTATGAAGAAA+TGG | - | chr1.4:26527402-26527421 | MS.gene71309:intron | 40.0% | |
| TTTGCCATGTTGCATTCAGT+AGG | + | chr1.4:26528442-26528461 | None:intergenic | 40.0% | |
| ! | ACAACACTTGATAGAGGCAT+TGG | - | chr1.4:26528904-26528923 | MS.gene71309:intron | 40.0% |
| ! | CTCTGTTGGTAAGTAAAGGT+TGG | + | chr1.4:26527678-26527697 | None:intergenic | 40.0% |
| ! | CTTGCTCTGTTGGTAAGTAA+AGG | + | chr1.4:26527682-26527701 | None:intergenic | 40.0% |
| ! | TAAATTGGAGCTTGCTCTGT+TGG | + | chr1.4:26527692-26527711 | None:intergenic | 40.0% |
| !! | AATGTACCTAAACTTGCTGG+TGG | + | chr1.4:26528943-26528962 | None:intergenic | 40.0% |
| !! | AGATGGACTAAAAACCCTAG+AGG | - | chr1.4:26529027-26529046 | MS.gene71309:CDS | 40.0% |
| !! | CAACACTTGATAGAGGCATT+GGG | - | chr1.4:26528905-26528924 | MS.gene71309:intron | 40.0% |
| !! | GACCTTAGCCATTTTAGTGA+AGG | + | chr1.4:26527381-26527400 | None:intergenic | 40.0% |
| !! | TCTTAAGTTGCGGTTTGGTT+TGG | + | chr1.4:26527916-26527935 | None:intergenic | 40.0% |
| !! | TCTTTAGGGTCACTAGGAAT+AGG | + | chr1.4:26527434-26527453 | None:intergenic | 40.0% |
| !!! | GATTTTTTGCGGTTTCGGTT+TGG | + | chr1.4:26527818-26527837 | None:intergenic | 40.0% |
| !!! | GGTTTCGGTTTGGGTTTTTT+CGG | + | chr1.4:26527808-26527827 | None:intergenic | 40.0% |
| ACACCCTACTGAATGCAACA+TGG | - | chr1.4:26528435-26528454 | MS.gene71309:CDS | 45.0% | |
| ACCAATGTCACCAATTGGGT+TGG | - | chr1.4:26526388-26526407 | MS.gene71309:CDS | 45.0% | |
| ACCACCTGAGTGTCATGAAA+TGG | - | chr1.4:26527004-26527023 | MS.gene71309:intron | 45.0% | |
| AGGGAGTCCCTTCACTAAAA+TGG | - | chr1.4:26527370-26527389 | MS.gene71309:intron | 45.0% | |
| AGTCCTCTTTCCCTAGGAAT+TGG | - | chr1.4:26527716-26527735 | MS.gene71309:intron | 45.0% | |
| ATGCCCAGTTACACATGTAG+AGG | - | chr1.4:26528783-26528802 | MS.gene71309:intron | 45.0% | |
| CATAATATATGCAGGGTCCG+AGG | + | chr1.4:26528592-26528611 | None:intergenic | 45.0% | |
| CCAAATGGTACCAACCCAAT+TGG | + | chr1.4:26526401-26526420 | None:intergenic | 45.0% | |
| CTTATACCTCAATGTGGGAG+TGG | + | chr1.4:26527513-26527532 | None:intergenic | 45.0% | |
| GGTTATGCACTTCCAACTCT+TGG | - | chr1.4:26527284-26527303 | MS.gene71309:intron | 45.0% | |
| GTCTCCTCTACATGTGTAAC+TGG | + | chr1.4:26528790-26528809 | None:intergenic | 45.0% | |
| TACACTCTAGCAGTAGGAAC+AGG | - | chr1.4:26527086-26527105 | MS.gene71309:intron | 45.0% | |
| TACTAGAGTCCTCTTTCCCT+AGG | - | chr1.4:26527710-26527729 | MS.gene71309:intron | 45.0% | |
| TCCATTTCATGACACTCAGG+TGG | + | chr1.4:26527008-26527027 | None:intergenic | 45.0% | |
| TTCCTATGCCCATCCTTTGA+AGG | + | chr1.4:26529062-26529081 | None:intergenic | 45.0% | |
| TTGATTCCACTCCCACATTG+AGG | - | chr1.4:26527504-26527523 | MS.gene71309:intron | 45.0% | |
| ! | ACCAACCCAATTGGTGACAT+TGG | + | chr1.4:26526392-26526411 | None:intergenic | 45.0% |
| ! | CATGACACTCAGGTGGTTTT+AGG | + | chr1.4:26527001-26527020 | None:intergenic | 45.0% |
| ! | GCACCAATGGTGGAAATGTT+AGG | + | chr1.4:26527122-26527141 | None:intergenic | 45.0% |
| ! | TCTTGACACATGCCTTGTTG+AGG | + | chr1.4:26528735-26528754 | None:intergenic | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+GGG | + | chr1.4:26528621-26528640 | None:intergenic | 45.0% |
| !! | AAGTTGCGGTTTGGTTTGGT+TGG | + | chr1.4:26527912-26527931 | None:intergenic | 45.0% |
| !! | CCAATTGGGTTGGTACCATT+TGG | - | chr1.4:26526398-26526417 | MS.gene71309:CDS | 45.0% |
| !! | GATAATGTGGGTTGGACTCT+TGG | - | chr1.4:26527263-26527282 | MS.gene71309:intron | 45.0% |
| !! | GCAACTTGGATTGGTTCGTA+TGG | + | chr1.4:26528303-26528322 | None:intergenic | 45.0% |
| !! | TTAATTAAGTAAAAATATAT+AGG | - | chr1.4:26526543-26526562 | MS.gene71309:CDS | 5.0% |
| ACTCTAGCAGTAGGAACAGG+TGG | - | chr1.4:26527089-26527108 | MS.gene71309:intron | 50.0% | |
| AGACATGCCCTGCCAATTTG+AGG | + | chr1.4:26526949-26526968 | None:intergenic | 50.0% | |
| CAAAGGTCCAATAACGGCCA+AGG | + | chr1.4:26526462-26526481 | None:intergenic | 50.0% | |
| CCTCCAATTCCTAGGGAAAG+AGG | + | chr1.4:26527722-26527741 | None:intergenic | 50.0% | |
| CCTCTTTCCCTAGGAATTGG+AGG | - | chr1.4:26527719-26527738 | MS.gene71309:intron | 50.0% | |
| CTCCTTCAAAGGATGGGCAT+AGG | - | chr1.4:26529057-26529076 | MS.gene71309:CDS | 50.0% | |
| GCACTCTACACTCTAGCAGT+AGG | - | chr1.4:26527080-26527099 | MS.gene71309:intron | 50.0% | |
| GTGAGCTTAGCTCAGTTGGT+AGG | + | chr1.4:26528622-26528641 | None:intergenic | 50.0% | |
| TATGTTGCTGACGCCTACCT+TGG | - | chr1.4:26526442-26526461 | MS.gene71309:CDS | 50.0% | |
| TTAGTGAAGGGACTCCCTGT+AGG | + | chr1.4:26527368-26527387 | None:intergenic | 50.0% | |
| ! | TGCATTCAGTAGGGTGTTCG+CGG | + | chr1.4:26528432-26528451 | None:intergenic | 50.0% |
| !! | TTGGATTGGTTCGTATGGCG+CGG | + | chr1.4:26528298-26528317 | None:intergenic | 50.0% |
| !!! | CACTCAGGTGGTTTTAGGCT+TGG | + | chr1.4:26526996-26527015 | None:intergenic | 50.0% |
| ACGCCTACCTTGGCCGTTAT+TGG | - | chr1.4:26526452-26526471 | MS.gene71309:CDS | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr1.4:26528623-26528642 | MS.gene71309:intron | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr1.4:26528626-26528645 | None:intergenic | 55.0% | |
| CTGAGCTAAGCTCACGAGGA+CGG | - | chr1.4:26528627-26528646 | MS.gene71309:intron | 55.0% | |
| GGTCCAATAACGGCCAAGGT+AGG | + | chr1.4:26526458-26526477 | None:intergenic | 55.0% | |
| GGTGGTCGAGGTTTGAACCT+CGG | - | chr1.4:26528572-26528591 | MS.gene71309:intron | 55.0% | |
| ! | TCAGTAGGGTGTTCGCGGTG+CGG | + | chr1.4:26528427-26528446 | None:intergenic | 60.0% |
| !! | GTTCGCGGTGCGGTTTGGTT+CGG | + | chr1.4:26528417-26528436 | None:intergenic | 60.0% |
| ! | AGGGTGTTCGCGGTGCGGTT+TGG | + | chr1.4:26528422-26528441 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 26526290 | 26529138 | 26526290 | ID=MS.gene71309 |
| chr1.4 | mRNA | 26526290 | 26529138 | 26526290 | ID=MS.gene71309.t1;Parent=MS.gene71309 |
| chr1.4 | exon | 26528921 | 26529138 | 26528921 | ID=MS.gene71309.t1.exon1;Parent=MS.gene71309.t1 |
| chr1.4 | CDS | 26528921 | 26529138 | 26528921 | ID=cds.MS.gene71309.t1;Parent=MS.gene71309.t1 |
| chr1.4 | exon | 26527903 | 26528468 | 26527903 | ID=MS.gene71309.t1.exon2;Parent=MS.gene71309.t1 |
| chr1.4 | CDS | 26527903 | 26528468 | 26527903 | ID=cds.MS.gene71309.t1;Parent=MS.gene71309.t1 |
| chr1.4 | exon | 26526290 | 26526699 | 26526290 | ID=MS.gene71309.t1.exon3;Parent=MS.gene71309.t1 |
| chr1.4 | CDS | 26526290 | 26526699 | 26526290 | ID=cds.MS.gene71309.t1;Parent=MS.gene71309.t1 |
| Gene Sequence |
| Protein sequence |
