Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053354.t1 | XP_013467074.1 | 98.5 | 397 | 6 | 0 | 1 | 397 | 40 | 436 | 3.10E-219 | 770.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053354.t1 | Q9FNL7 | 70.6 | 398 | 115 | 2 | 1 | 397 | 40 | 436 | 1.3e-157 | 557.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053354.t1 | A0A072VGD9 | 98.5 | 397 | 6 | 0 | 1 | 397 | 40 | 436 | 2.3e-219 | 770.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053354 | MS.gene35480 | 0.801436 | 9.01E-49 | -1.69E-46 |
| MS.gene053354 | MS.gene67002 | 0.816372 | 5.72E-52 | -1.69E-46 |
| MS.gene053354 | MS.gene69027 | 0.804107 | 2.53E-49 | -1.69E-46 |
| MS.gene053354 | MS.gene71309 | 0.98388 | 5.75E-159 | -1.69E-46 |
| MS.gene053354 | MS.gene71327 | 0.984338 | 2.86E-160 | -1.69E-46 |
| MS.gene053354 | MS.gene86114 | 0.806801 | 6.89E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 92 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGTTCATATAGTTCTTT+AGG | 0.172531 | 1.4:-26457320 | None:intergenic |
| ACGCCTACCTTGGCCGTTAT+TGG | 0.203711 | 1.4:+26456326 | MS.gene053354:CDS |
| TTTGAGAGAATGGCTTATTA+TGG | 0.210968 | 1.4:+26456175 | MS.gene053354:CDS |
| ATTTGGATCACTCCAATATT+AGG | 0.239092 | 1.4:+26456289 | MS.gene053354:CDS |
| GTCTCCTCTACATGTGTAAC+TGG | 0.243014 | 1.4:-26458661 | None:intergenic |
| CATAATTCATATAGTGATTA+TGG | 0.284425 | 1.4:+26458957 | MS.gene053354:CDS |
| AGAACTATATGAACTTGATT+TGG | 0.287269 | 1.4:+26457325 | MS.gene053354:CDS |
| GATCATTCTTATCATTTGTT+TGG | 0.294014 | 1.4:-26458683 | None:intergenic |
| CTAAAACAGAATTTGCAAAA+AGG | 0.325782 | 1.4:-26457103 | None:intergenic |
| GGATGTTCAGCATCTTTATT+GGG | 0.330214 | 1.4:+26457078 | MS.gene053354:CDS |
| AAAATTCCACCAGCAAGTTT+AGG | 0.331725 | 1.4:+26458808 | MS.gene053354:CDS |
| AGGGAGTCCCTTCACTAAAA+TGG | 0.333057 | 1.4:+26457244 | MS.gene053354:CDS |
| CCAATTGGGTTGGTACCATT+TGG | 0.335195 | 1.4:+26456272 | MS.gene053354:CDS |
| TGGATGTTCAGCATCTTTAT+TGG | 0.338681 | 1.4:+26457077 | MS.gene053354:CDS |
| CAAGTTCATATAGTTCTTTA+GGG | 0.338874 | 1.4:-26457319 | None:intergenic |
| TGCTTCCTTTATCTACCTAT+TGG | 0.339032 | 1.4:+26456360 | MS.gene053354:CDS |
| GCAACATAAGCACCTAATAT+TGG | 0.342872 | 1.4:-26456301 | None:intergenic |
| CAACTTTCACTGAAAGATAT+AGG | 0.345759 | 1.4:+26458986 | MS.gene053354:CDS |
| TTGAGAGAATGGCTTATTAT+GGG | 0.354991 | 1.4:+26456176 | MS.gene053354:CDS |
| CTTCTACCAATGTCACCAAT+TGG | 0.359761 | 1.4:+26456257 | MS.gene053354:CDS |
| ATAAACTCTCATTCTTCAAT+TGG | 0.378779 | 1.4:+26457054 | MS.gene053354:CDS |
| GGTTATGCACTTCCAACTCT+TGG | 0.392524 | 1.4:+26457158 | MS.gene053354:CDS |
| GATAATGTGGGTTGGACTCT+TGG | 0.393984 | 1.4:+26457137 | MS.gene053354:CDS |
| TCTTTAGGGTCACTAGGAAT+AGG | 0.396153 | 1.4:-26457305 | None:intergenic |
| ACATACCAATAGGTAGATAA+AGG | 0.397338 | 1.4:-26456365 | None:intergenic |
| ATTAATGTAGTAGCCATGAT+TGG | 0.405581 | 1.4:-26458706 | None:intergenic |
| GCACCAATGGTGGAAATGTT+AGG | 0.424088 | 1.4:-26456993 | None:intergenic |
| TTGTAAAGATTATGCAAAGA+TGG | 0.426548 | 1.4:+26458884 | MS.gene053354:CDS |
| TTCCTATGCCCATCCTTTGA+AGG | 0.429082 | 1.4:-26458933 | None:intergenic |
| ATTTGAGCAATCATTGTACT+AGG | 0.430351 | 1.4:-26458730 | None:intergenic |
| TTACAGCTAGTAGTGTTCTA+TGG | 0.437692 | 1.4:+26456930 | MS.gene053354:CDS |
| TTCTACCAATGTCACCAATT+GGG | 0.441799 | 1.4:+26456258 | MS.gene053354:CDS |
| AACTCTCATTCTTCAATTGG+TGG | 0.444499 | 1.4:+26457057 | MS.gene053354:CDS |
| GTATGAGGTATTTGAGAGAA+TGG | 0.453573 | 1.4:+26456165 | MS.gene053354:CDS |
| ACCACCTGAGTGTCATGAAA+TGG | 0.453752 | 1.4:+26456878 | MS.gene053354:CDS |
| TTGTGGCTGCTATGAAGAAA+TGG | 0.454963 | 1.4:+26457276 | MS.gene053354:CDS |
| CCAAATGGTACCAACCCAAT+TGG | 0.470302 | 1.4:-26456272 | None:intergenic |
| TGAAGGAGAGTAATTCCTCT+AGG | 0.480380 | 1.4:-26458916 | None:intergenic |
| TACACTCTAGCAGTAGGAAC+AGG | 0.482514 | 1.4:+26456960 | MS.gene053354:CDS |
| TATAGACATAAAGTACCTAC+AGG | 0.484411 | 1.4:+26457224 | MS.gene053354:CDS |
| TATGTTGCTGACGCCTACCT+TGG | 0.492497 | 1.4:+26456316 | MS.gene053354:CDS |
| TTGGAAGAGTATGCAAAGAA+AGG | 0.494172 | 1.4:+26457344 | MS.gene053354:CDS |
| ACAAATGTACCTAAACTTGC+TGG | 0.498006 | 1.4:-26458817 | None:intergenic |
| ACAACACTTGATAGAGGCAT+TGG | 0.500358 | 1.4:+26458778 | MS.gene053354:CDS |
| GATAAGAATGATCCCAATCA+TGG | 0.502771 | 1.4:+26458693 | MS.gene053354:CDS |
| AGTCTATATACAAGATAATG+TGG | 0.504069 | 1.4:+26457124 | MS.gene053354:CDS |
| ATCAAATTGATCAGCACCAA+TGG | 0.509830 | 1.4:-26457006 | None:intergenic |
| GAAGGAGAGTAATTCCTCTA+GGG | 0.517835 | 1.4:-26458915 | None:intergenic |
| AAGCCTAACATTTCCACCAT+TGG | 0.518336 | 1.4:+26456990 | MS.gene053354:CDS |
| TATAGTTCTTTAGGGTCACT+AGG | 0.526463 | 1.4:-26457311 | None:intergenic |
| CTTATACCTCAATGTGGGAG+TGG | 0.531336 | 1.4:-26457384 | None:intergenic |
| AATTACTCTCCTTCAAAGGA+TGG | 0.536918 | 1.4:+26458924 | MS.gene053354:CDS |
| TCCCTTCACTAAAATGGCTA+AGG | 0.542023 | 1.4:+26457250 | MS.gene053354:CDS |
| TTAATGTAGTAGCCATGATT+GGG | 0.543126 | 1.4:-26458705 | None:intergenic |
| GGTACTTTATGTCTATAGAA+TGG | 0.550764 | 1.4:-26457218 | None:intergenic |
| CAACACTTGATAGAGGCATT+GGG | 0.555650 | 1.4:+26458779 | MS.gene053354:CDS |
| TTGATTCCACTCCCACATTG+AGG | 0.555903 | 1.4:+26457378 | MS.gene053354:CDS |
| TTAATAAAGAAGCTTCATCA+AGG | 0.556770 | 1.4:+26456223 | MS.gene053354:CDS |
| GATATTGCAAGTCCAAGAGT+TGG | 0.562877 | 1.4:-26457170 | None:intergenic |
| AAGACTAATTCAAGTACTAG+TGG | 0.564192 | 1.4:+26458625 | MS.gene053354:CDS |
| ACCAATGTCACCAATTGGGT+TGG | 0.565849 | 1.4:+26456262 | MS.gene053354:CDS |
| TCTTGACACATGCCTTGTTG+AGG | 0.569147 | 1.4:-26458606 | None:intergenic |
| ACCAACCCAATTGGTGACAT+TGG | 0.570728 | 1.4:-26456263 | None:intergenic |
| CTCCTTCAAAGGATGGGCAT+AGG | 0.570734 | 1.4:+26458931 | MS.gene053354:CDS |
| TAATATTGGAGTGATCCAAA+TGG | 0.571433 | 1.4:-26456287 | None:intergenic |
| CAGTAACAAAGGTCCAATAA+CGG | 0.571576 | 1.4:-26456339 | None:intergenic |
| GAGGAATTACTCTCCTTCAA+AGG | 0.576375 | 1.4:+26458920 | MS.gene053354:CDS |
| AATGTACCTAAACTTGCTGG+TGG | 0.578804 | 1.4:-26458814 | None:intergenic |
| ATATACAAGATAATGTGGGT+TGG | 0.583558 | 1.4:+26457129 | MS.gene053354:CDS |
| TCTCCTCTACATGTGTAACT+GGG | 0.590294 | 1.4:-26458660 | None:intergenic |
| ATTACTCTCCTTCAAAGGAT+GGG | 0.590754 | 1.4:+26458925 | MS.gene053354:CDS |
| CAAGGAACAACACTTGATAG+AGG | 0.596087 | 1.4:+26458772 | MS.gene053354:CDS |
| GTCTATATACAAGATAATGT+GGG | 0.599062 | 1.4:+26457125 | MS.gene053354:CDS |
| AATACACTATTTGTGAAGCA+AGG | 0.599414 | 1.4:+26458754 | MS.gene053354:CDS |
| GGTCCAATAACGGCCAAGGT+AGG | 0.599634 | 1.4:-26456329 | None:intergenic |
| AAATTGATCAGCACCAATGG+TGG | 0.600096 | 1.4:-26457003 | None:intergenic |
| AATGGATGTTACAAAATGCA+AGG | 0.601334 | 1.4:+26456896 | MS.gene053354:CDS |
| CAAAGGTCCAATAACGGCCA+AGG | 0.604327 | 1.4:-26456333 | None:intergenic |
| GATAAAGGAAGCAGTAACAA+AGG | 0.605026 | 1.4:-26456350 | None:intergenic |
| TAAAATGGCTAAGGTCATTG+TGG | 0.611474 | 1.4:+26457259 | MS.gene053354:CDS |
| ACTCTAGCAGTAGGAACAGG+TGG | 0.614419 | 1.4:+26456963 | MS.gene053354:CDS |
| GCACTCTACACTCTAGCAGT+AGG | 0.615235 | 1.4:+26456954 | MS.gene053354:CDS |
| TCCATTTCATGACACTCAGG+TGG | 0.620788 | 1.4:-26456879 | None:intergenic |
| GAACACTACTAGCTGTAATG+TGG | 0.621214 | 1.4:-26456925 | None:intergenic |
| ATGCCCAGTTACACATGTAG+AGG | 0.628339 | 1.4:+26458657 | MS.gene053354:CDS |
| ACATCCATTTCATGACACTC+AGG | 0.634209 | 1.4:-26456882 | None:intergenic |
| TTAGTGAAGGGACTCCCTGT+AGG | 0.634253 | 1.4:-26457239 | None:intergenic |
| TGGAACTTATACCTCAATGT+GGG | 0.647517 | 1.4:-26457389 | None:intergenic |
| ATGGAACTTATACCTCAATG+TGG | 0.655784 | 1.4:-26457390 | None:intergenic |
| ACTAATTCAAGTACTAGTGG+AGG | 0.670493 | 1.4:+26458628 | MS.gene053354:CDS |
| TGTATGCAGATTCCTCAACA+AGG | 0.703011 | 1.4:+26458594 | MS.gene053354:intron |
| ATAGACATAAAGTACCTACA+GGG | 0.722644 | 1.4:+26457225 | MS.gene053354:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAATTCTAAATATTTAT+AGG | + | chr1.4:26456729-26456748 | MS.gene053354:intron | 10.0% |
| !!! | AATATCTATCATAATATTTT+TGG | + | chr1.4:26457187-26457206 | MS.gene053354:CDS | 10.0% |
| !!! | GAAAAATGAAATTTTAATAT+TGG | + | chr1.4:26458053-26458072 | MS.gene053354:intron | 10.0% |
| !!! | TATTACTTATTTTTTAATTG+TGG | + | chr1.4:26458340-26458359 | MS.gene053354:intron | 10.0% |
| !! | AAATACTCATAAAAACTTAA+TGG | + | chr1.4:26457845-26457864 | MS.gene053354:intron | 15.0% |
| !! | TGTATTTGTGAAAAAAAAAT+AGG | - | chr1.4:26457429-26457448 | None:intergenic | 15.0% |
| !!! | AAATGTGATTTTATTTTGTA+AGG | + | chr1.4:26456700-26456719 | MS.gene053354:intron | 15.0% |
| !!! | AATACATATGGAAAATTTTA+CGG | - | chr1.4:26456574-26456593 | None:intergenic | 15.0% |
| !!! | AGTATGATTTTATTTTTTAG+AGG | - | chr1.4:26456482-26456501 | None:intergenic | 15.0% |
| !!! | GTATGATTTTATTTTTTAGA+GGG | - | chr1.4:26456481-26456500 | None:intergenic | 15.0% |
| !!! | TTATTATTTTTCTTAAGTTG+CGG | - | chr1.4:26457800-26457819 | None:intergenic | 15.0% |
| !! | AAAATAGGGTTATATTTGAA+AGG | - | chr1.4:26456773-26456792 | None:intergenic | 20.0% |
| !! | AAATAGGGTTATATTTGAAA+GGG | - | chr1.4:26456772-26456791 | None:intergenic | 20.0% |
| !! | AACAATGATAGTATAAGTTT+AGG | - | chr1.4:26458543-26458562 | None:intergenic | 20.0% |
| !! | AATAGGTATTAAATCAAACA+TGG | - | chr1.4:26457412-26457431 | None:intergenic | 20.0% |
| !! | ATAAATTAAGACATACCAAT+AGG | - | chr1.4:26456378-26456397 | None:intergenic | 20.0% |
| !! | CATAATTCATATAGTGATTA+TGG | + | chr1.4:26458957-26458976 | MS.gene053354:CDS | 20.0% |
| !! | CATAGACTGTATTAAAAATA+TGG | - | chr1.4:26458024-26458043 | None:intergenic | 20.0% |
| !! | TAAAACAGAATTTGCAAAAA+GGG | - | chr1.4:26457105-26457124 | None:intergenic | 20.0% |
| !! | TATAAGTTTAGGAAAATTTG+AGG | - | chr1.4:26458532-26458551 | None:intergenic | 20.0% |
| !! | TTATTATCTAGTGTGAAATA+GGG | + | chr1.4:26456394-26456413 | MS.gene053354:intron | 20.0% |
| !! | TTTATTATCTAGTGTGAAAT+AGG | + | chr1.4:26456393-26456412 | MS.gene053354:intron | 20.0% |
| !!! | AATGCCTCAAATTTTTTTTT+TGG | + | chr1.4:26458425-26458444 | MS.gene053354:intron | 20.0% |
| !!! | ATATAACCCTATTTTATTGT+TGG | + | chr1.4:26456778-26456797 | MS.gene053354:intron | 20.0% |
| !!! | TATAACCCTATTTTATTGTT+GGG | + | chr1.4:26456779-26456798 | MS.gene053354:intron | 20.0% |
| !!! | TTTGACAGAAAATTTTTACA+GGG | - | chr1.4:26456634-26456653 | None:intergenic | 20.0% |
| !!! | TTTTGACAGAAAATTTTTAC+AGG | - | chr1.4:26456635-26456654 | None:intergenic | 20.0% |
| ! | AAAAGAAAATGCATGTCATT+CGG | + | chr1.4:26457622-26457641 | MS.gene053354:intron | 25.0% |
| ! | ACAAGGACTAAAAATACATA+TGG | - | chr1.4:26456586-26456605 | None:intergenic | 25.0% |
| ! | ACCACCAAAAAAAAAATTTG+AGG | - | chr1.4:26458432-26458451 | None:intergenic | 25.0% |
| ! | AGAACTATATGAACTTGATT+TGG | + | chr1.4:26457325-26457344 | MS.gene053354:CDS | 25.0% |
| ! | AGTCTATATACAAGATAATG+TGG | + | chr1.4:26457124-26457143 | MS.gene053354:CDS | 25.0% |
| ! | ATAAACTCTCATTCTTCAAT+TGG | + | chr1.4:26457054-26457073 | MS.gene053354:CDS | 25.0% |
| ! | ATTCGACTAAGTTTCAATTA+AGG | + | chr1.4:26457475-26457494 | MS.gene053354:intron | 25.0% |
| ! | CAAGTTCATATAGTTCTTTA+GGG | - | chr1.4:26457322-26457341 | None:intergenic | 25.0% |
| ! | CTAAAACAGAATTTGCAAAA+AGG | - | chr1.4:26457106-26457125 | None:intergenic | 25.0% |
| ! | GAAAGGGTTAATTAAGTAAA+TGG | - | chr1.4:26456756-26456775 | None:intergenic | 25.0% |
| ! | GATCATTCTTATCATTTGTT+TGG | - | chr1.4:26458686-26458705 | None:intergenic | 25.0% |
| ! | GTCTATATACAAGATAATGT+GGG | + | chr1.4:26457125-26457144 | MS.gene053354:CDS | 25.0% |
| ! | TCAAGTTCATATAGTTCTTT+AGG | - | chr1.4:26457323-26457342 | None:intergenic | 25.0% |
| ! | TTAATAAAGAAGCTTCATCA+AGG | + | chr1.4:26456223-26456242 | MS.gene053354:CDS | 25.0% |
| ! | TTAATACAGTCTATGTTGTT+GGG | + | chr1.4:26458029-26458048 | MS.gene053354:intron | 25.0% |
| ! | TTGTAAAGATTATGCAAAGA+TGG | + | chr1.4:26458884-26458903 | MS.gene053354:CDS | 25.0% |
| ! | TTTAATACAGTCTATGTTGT+TGG | + | chr1.4:26458028-26458047 | MS.gene053354:intron | 25.0% |
| !! | ACATTTTCCTTTAGCATTTT+AGG | - | chr1.4:26456667-26456686 | None:intergenic | 25.0% |
| !! | ATAGATGTTATGTTGGTAAA+TGG | + | chr1.4:26458401-26458420 | MS.gene053354:intron | 25.0% |
| !! | CATTTTCCTTTAGCATTTTA+GGG | - | chr1.4:26456666-26456685 | None:intergenic | 25.0% |
| !! | TACATACGGAAAATTTTACA+AGG | - | chr1.4:26456543-26456562 | None:intergenic | 25.0% |
| !! | TGTTGAAGGAAAATTTTACA+AGG | - | chr1.4:26456603-26456622 | None:intergenic | 25.0% |
| !! | TTACGGACTAAAAATACATA+CGG | - | chr1.4:26456557-26456576 | None:intergenic | 25.0% |
| !!! | AAACCAAATGAGATTTTTTG+CGG | - | chr1.4:26457703-26457722 | None:intergenic | 25.0% |
| !!! | TCTATCATAATATTTTTGGC+AGG | + | chr1.4:26457191-26457210 | MS.gene053354:CDS | 25.0% |
| AAACCGCAAAAAATCTCATT+TGG | + | chr1.4:26457697-26457716 | MS.gene053354:intron | 30.0% | |
| AAGACTAATTCAAGTACTAG+TGG | + | chr1.4:26458625-26458644 | MS.gene053354:CDS | 30.0% | |
| AATACACTATTTGTGAAGCA+AGG | + | chr1.4:26458754-26458773 | MS.gene053354:CDS | 30.0% | |
| AATGGATGTTACAAAATGCA+AGG | + | chr1.4:26456896-26456915 | MS.gene053354:CDS | 30.0% | |
| ACAGGGATTAAAAATGTTGA+AGG | - | chr1.4:26456617-26456636 | None:intergenic | 30.0% | |
| ACATACCAATAGGTAGATAA+AGG | - | chr1.4:26456368-26456387 | None:intergenic | 30.0% | |
| ATATACAAGATAATGTGGGT+TGG | + | chr1.4:26457129-26457148 | MS.gene053354:CDS | 30.0% | |
| ATTAATGTAGTAGCCATGAT+TGG | - | chr1.4:26458709-26458728 | None:intergenic | 30.0% | |
| ATTCAAATGTGACCTCAAAT+TGG | + | chr1.4:26456808-26456827 | MS.gene053354:intron | 30.0% | |
| ATTGGCCCAACAATAAAATA+GGG | - | chr1.4:26456787-26456806 | None:intergenic | 30.0% | |
| ATTTGAGCAATCATTGTACT+AGG | - | chr1.4:26458733-26458752 | None:intergenic | 30.0% | |
| ATTTGGATCACTCCAATATT+AGG | + | chr1.4:26456289-26456308 | MS.gene053354:CDS | 30.0% | |
| CAACTAGATAGATGTTATGT+TGG | + | chr1.4:26458394-26458413 | MS.gene053354:intron | 30.0% | |
| CAACTTTCACTGAAAGATAT+AGG | + | chr1.4:26458986-26459005 | MS.gene053354:CDS | 30.0% | |
| CAATTAAGGACAAATCATTC+AGG | + | chr1.4:26457489-26457508 | MS.gene053354:intron | 30.0% | |
| GACAATGCATAATATATGCA+GGG | - | chr1.4:26458473-26458492 | None:intergenic | 30.0% | |
| GCAAAAAATCTCATTTGGTT+TGG | + | chr1.4:26457702-26457721 | MS.gene053354:intron | 30.0% | |
| GGTACTTTATGTCTATAGAA+TGG | - | chr1.4:26457221-26457240 | None:intergenic | 30.0% | |
| TAATATTGGAGTGATCCAAA+TGG | - | chr1.4:26456290-26456309 | None:intergenic | 30.0% | |
| TATTAAACCTCCAATTCCTA+GGG | - | chr1.4:26457603-26457622 | None:intergenic | 30.0% | |
| TGCTAAAGGAAAATGTTACA+TGG | + | chr1.4:26456671-26456690 | MS.gene053354:intron | 30.0% | |
| TTAATGTAGTAGCCATGATT+GGG | - | chr1.4:26458708-26458727 | None:intergenic | 30.0% | |
| TTATTAAACCTCCAATTCCT+AGG | - | chr1.4:26457604-26457623 | None:intergenic | 30.0% | |
| TTGAGAGAATGGCTTATTAT+GGG | + | chr1.4:26456176-26456195 | MS.gene053354:CDS | 30.0% | |
| TTTGAGAGAATGGCTTATTA+TGG | + | chr1.4:26456175-26456194 | MS.gene053354:CDS | 30.0% | |
| TTTGTCTACGTGACATATAT+AGG | - | chr1.4:26457828-26457847 | None:intergenic | 30.0% | |
| ! | AGATAAAAAAGCATGTGGTT+CGG | - | chr1.4:26458244-26458263 | None:intergenic | 30.0% |
| ! | ATAGACATAAAGTACCTACA+GGG | + | chr1.4:26457225-26457244 | MS.gene053354:CDS | 30.0% |
| ! | TATAGACATAAAGTACCTAC+AGG | + | chr1.4:26457224-26457243 | MS.gene053354:CDS | 30.0% |
| ! | TTTTGTCCCTAAAATGCTAA+AGG | + | chr1.4:26456657-26456676 | MS.gene053354:intron | 30.0% |
| !! | ATTTTTCTTAAGTTGCGGTT+TGG | - | chr1.4:26457795-26457814 | None:intergenic | 30.0% |
| !!! | AATGAGATTTTTTGCGGTTT+CGG | - | chr1.4:26457697-26457716 | None:intergenic | 30.0% |
| !!! | AATTTTTTTTTTGGTGGTCG+AGG | + | chr1.4:26458434-26458453 | MS.gene053354:intron | 30.0% |
| !!! | CAATTTTTTACTCAACCACA+TGG | + | chr1.4:26457737-26457756 | MS.gene053354:intron | 30.0% |
| !!! | GCCTCAAATTTTTTTTTTGG+TGG | + | chr1.4:26458428-26458447 | MS.gene053354:intron | 30.0% |
| !!! | TGCTTTTTTATCTCACGATT+AGG | + | chr1.4:26458251-26458270 | MS.gene053354:intron | 30.0% |
| AAAATTCCACCAGCAAGTTT+AGG | + | chr1.4:26458808-26458827 | MS.gene053354:CDS | 35.0% | |
| AAATCGCAAACAAAACCATG+TGG | - | chr1.4:26457755-26457774 | None:intergenic | 35.0% | |
| AACTCTCATTCTTCAATTGG+TGG | + | chr1.4:26457057-26457076 | MS.gene053354:CDS | 35.0% | |
| AATTACTCTCCTTCAAAGGA+TGG | + | chr1.4:26458924-26458943 | MS.gene053354:CDS | 35.0% | |
| ACAAATGTACCTAAACTTGC+TGG | - | chr1.4:26458820-26458839 | None:intergenic | 35.0% | |
| ACTAATTCAAGTACTAGTGG+AGG | + | chr1.4:26458628-26458647 | MS.gene053354:CDS | 35.0% | |
| ATCAAATTGATCAGCACCAA+TGG | - | chr1.4:26457009-26457028 | None:intergenic | 35.0% | |
| ATGGAACTTATACCTCAATG+TGG | - | chr1.4:26457393-26457412 | None:intergenic | 35.0% | |
| ATGTCTTGTGTTGTATGCTA+GGG | + | chr1.4:26457646-26457665 | MS.gene053354:intron | 35.0% | |
| ATTACTCTCCTTCAAAGGAT+GGG | + | chr1.4:26458925-26458944 | MS.gene053354:CDS | 35.0% | |
| CAAACCAAATCAATGCAACT+TGG | - | chr1.4:26458191-26458210 | None:intergenic | 35.0% | |
| CAAATCAATGCAACTTGGAT+TGG | - | chr1.4:26458186-26458205 | None:intergenic | 35.0% | |
| CAGTAACAAAGGTCCAATAA+CGG | - | chr1.4:26456342-26456361 | None:intergenic | 35.0% | |
| CATTGGCCCAACAATAAAAT+AGG | - | chr1.4:26456788-26456807 | None:intergenic | 35.0% | |
| GAAAGAGGACTCTAGTAAAT+TGG | - | chr1.4:26457581-26457600 | None:intergenic | 35.0% | |
| GATAAAGGAAGCAGTAACAA+AGG | - | chr1.4:26456353-26456372 | None:intergenic | 35.0% | |
| GATAAGAATGATCCCAATCA+TGG | + | chr1.4:26458693-26458712 | MS.gene053354:CDS | 35.0% | |
| GCAACATAAGCACCTAATAT+TGG | - | chr1.4:26456304-26456323 | None:intergenic | 35.0% | |
| GGACAATGCATAATATATGC+AGG | - | chr1.4:26458474-26458493 | None:intergenic | 35.0% | |
| GGATGTTCAGCATCTTTATT+GGG | + | chr1.4:26457078-26457097 | MS.gene053354:CDS | 35.0% | |
| TAAAATGGCTAAGGTCATTG+TGG | + | chr1.4:26457259-26457278 | MS.gene053354:CDS | 35.0% | |
| TATGTCTTGTGTTGTATGCT+AGG | + | chr1.4:26457645-26457664 | MS.gene053354:intron | 35.0% | |
| TGAAACTTAGTCGAATCACT+TGG | - | chr1.4:26457471-26457490 | None:intergenic | 35.0% | |
| TGAGGTCACATTTGAATCAT+TGG | - | chr1.4:26456805-26456824 | None:intergenic | 35.0% | |
| TGCTTCCTTTATCTACCTAT+TGG | + | chr1.4:26456360-26456379 | MS.gene053354:CDS | 35.0% | |
| TGGAACTTATACCTCAATGT+GGG | - | chr1.4:26457392-26457411 | None:intergenic | 35.0% | |
| TGGACTTATCATGTCAAGTT+TGG | + | chr1.4:26458360-26458379 | MS.gene053354:intron | 35.0% | |
| TGGATGTTCAGCATCTTTAT+TGG | + | chr1.4:26457077-26457096 | MS.gene053354:CDS | 35.0% | |
| TTACAGCTAGTAGTGTTCTA+TGG | + | chr1.4:26456930-26456949 | MS.gene053354:CDS | 35.0% | |
| TTCTACCAATGTCACCAATT+GGG | + | chr1.4:26456258-26456277 | MS.gene053354:CDS | 35.0% | |
| ! | GTATGAGGTATTTGAGAGAA+TGG | + | chr1.4:26456165-26456184 | MS.gene053354:CDS | 35.0% |
| ! | TCGTGAGATAAAAAAGCATG+TGG | - | chr1.4:26458249-26458268 | None:intergenic | 35.0% |
| ! | TGGTAAGTAAAGGTTGGTTA+AGG | - | chr1.4:26457546-26457565 | None:intergenic | 35.0% |
| ! | TTGGAAGAGTATGCAAAGAA+AGG | + | chr1.4:26457344-26457363 | MS.gene053354:CDS | 35.0% |
| !! | ACCTTAGCCATTTTAGTGAA+GGG | - | chr1.4:26457254-26457273 | None:intergenic | 35.0% |
| !! | CAAGTTGCATTGATTTGGTT+TGG | + | chr1.4:26458189-26458208 | MS.gene053354:intron | 35.0% |
| !! | CAATCCAAGTTGCATTGATT+TGG | + | chr1.4:26458184-26458203 | MS.gene053354:intron | 35.0% |
| !! | TATAGTTCTTTAGGGTCACT+AGG | - | chr1.4:26457314-26457333 | None:intergenic | 35.0% |
| !!! | ATTTTTTGCGGTTTCGGTTT+GGG | - | chr1.4:26457691-26457710 | None:intergenic | 35.0% |
| AAATGTGACCTCAAATTGGC+AGG | + | chr1.4:26456812-26456831 | MS.gene053354:intron | 40.0% | |
| AAATTGATCAGCACCAATGG+TGG | - | chr1.4:26457006-26457025 | None:intergenic | 40.0% | |
| AAGCCTAACATTTCCACCAT+TGG | + | chr1.4:26456990-26457009 | MS.gene053354:CDS | 40.0% | |
| AATGTGACCTCAAATTGGCA+GGG | + | chr1.4:26456813-26456832 | MS.gene053354:intron | 40.0% | |
| ACATCCATTTCATGACACTC+AGG | - | chr1.4:26456885-26456904 | None:intergenic | 40.0% | |
| CAAGGAACAACACTTGATAG+AGG | + | chr1.4:26458772-26458791 | MS.gene053354:CDS | 40.0% | |
| CTTCTACCAATGTCACCAAT+TGG | + | chr1.4:26456257-26456276 | MS.gene053354:CDS | 40.0% | |
| GAACACTACTAGCTGTAATG+TGG | - | chr1.4:26456928-26456947 | None:intergenic | 40.0% | |
| GAAGGAGAGTAATTCCTCTA+GGG | - | chr1.4:26458918-26458937 | None:intergenic | 40.0% | |
| GAGGAATTACTCTCCTTCAA+AGG | + | chr1.4:26458920-26458939 | MS.gene053354:CDS | 40.0% | |
| GATATTGCAAGTCCAAGAGT+TGG | - | chr1.4:26457173-26457192 | None:intergenic | 40.0% | |
| TCCCTTCACTAAAATGGCTA+AGG | + | chr1.4:26457250-26457269 | MS.gene053354:CDS | 40.0% | |
| TCTCCTCTACATGTGTAACT+GGG | - | chr1.4:26458663-26458682 | None:intergenic | 40.0% | |
| TGAAGGAGAGTAATTCCTCT+AGG | - | chr1.4:26458919-26458938 | None:intergenic | 40.0% | |
| TGTATGCAGATTCCTCAACA+AGG | + | chr1.4:26458594-26458613 | MS.gene053354:intron | 40.0% | |
| TGTCTTGTGTTGTATGCTAG+GGG | + | chr1.4:26457647-26457666 | MS.gene053354:intron | 40.0% | |
| TTGCCATGTTGCATTCAGTA+GGG | - | chr1.4:26458315-26458334 | None:intergenic | 40.0% | |
| TTGTGGCTGCTATGAAGAAA+TGG | + | chr1.4:26457276-26457295 | MS.gene053354:CDS | 40.0% | |
| TTTGCCATGTTGCATTCAGT+AGG | - | chr1.4:26458316-26458335 | None:intergenic | 40.0% | |
| ! | ACAACACTTGATAGAGGCAT+TGG | + | chr1.4:26458778-26458797 | MS.gene053354:CDS | 40.0% |
| ! | CTCTGTTGGTAAGTAAAGGT+TGG | - | chr1.4:26457552-26457571 | None:intergenic | 40.0% |
| ! | CTTGCTCTGTTGGTAAGTAA+AGG | - | chr1.4:26457556-26457575 | None:intergenic | 40.0% |
| ! | TAAATTGGAGCTTGCTCTGT+TGG | - | chr1.4:26457566-26457585 | None:intergenic | 40.0% |
| !! | AATGTACCTAAACTTGCTGG+TGG | - | chr1.4:26458817-26458836 | None:intergenic | 40.0% |
| !! | AGATGGACTAAAAACCCTAG+AGG | + | chr1.4:26458901-26458920 | MS.gene053354:CDS | 40.0% |
| !! | CAACACTTGATAGAGGCATT+GGG | + | chr1.4:26458779-26458798 | MS.gene053354:CDS | 40.0% |
| !! | GACCTTAGCCATTTTAGTGA+AGG | - | chr1.4:26457255-26457274 | None:intergenic | 40.0% |
| !! | TCTTAAGTTGCGGTTTGGTT+TGG | - | chr1.4:26457790-26457809 | None:intergenic | 40.0% |
| !! | TCTTTAGGGTCACTAGGAAT+AGG | - | chr1.4:26457308-26457327 | None:intergenic | 40.0% |
| !!! | GATTTTTTGCGGTTTCGGTT+TGG | - | chr1.4:26457692-26457711 | None:intergenic | 40.0% |
| !!! | GGTTTCGGTTTGGGTTTTTT+CGG | - | chr1.4:26457682-26457701 | None:intergenic | 40.0% |
| ACACCCTACTGAATGCAACA+TGG | + | chr1.4:26458309-26458328 | MS.gene053354:intron | 45.0% | |
| ACCAATGTCACCAATTGGGT+TGG | + | chr1.4:26456262-26456281 | MS.gene053354:CDS | 45.0% | |
| ACCACCTGAGTGTCATGAAA+TGG | + | chr1.4:26456878-26456897 | MS.gene053354:CDS | 45.0% | |
| AGGGAGTCCCTTCACTAAAA+TGG | + | chr1.4:26457244-26457263 | MS.gene053354:CDS | 45.0% | |
| AGTCCTCTTTCCCTAGGAAT+TGG | + | chr1.4:26457590-26457609 | MS.gene053354:intron | 45.0% | |
| ATGCCCAGTTACACATGTAG+AGG | + | chr1.4:26458657-26458676 | MS.gene053354:CDS | 45.0% | |
| CATAATATATGCAGGGTCCG+AGG | - | chr1.4:26458466-26458485 | None:intergenic | 45.0% | |
| CCAAATGGTACCAACCCAAT+TGG | - | chr1.4:26456275-26456294 | None:intergenic | 45.0% | |
| CTTATACCTCAATGTGGGAG+TGG | - | chr1.4:26457387-26457406 | None:intergenic | 45.0% | |
| GGTTATGCACTTCCAACTCT+TGG | + | chr1.4:26457158-26457177 | MS.gene053354:CDS | 45.0% | |
| GTCTCCTCTACATGTGTAAC+TGG | - | chr1.4:26458664-26458683 | None:intergenic | 45.0% | |
| TACACTCTAGCAGTAGGAAC+AGG | + | chr1.4:26456960-26456979 | MS.gene053354:CDS | 45.0% | |
| TACTAGAGTCCTCTTTCCCT+AGG | + | chr1.4:26457584-26457603 | MS.gene053354:intron | 45.0% | |
| TCCATTTCATGACACTCAGG+TGG | - | chr1.4:26456882-26456901 | None:intergenic | 45.0% | |
| TTCCTATGCCCATCCTTTGA+AGG | - | chr1.4:26458936-26458955 | None:intergenic | 45.0% | |
| TTGATTCCACTCCCACATTG+AGG | + | chr1.4:26457378-26457397 | MS.gene053354:CDS | 45.0% | |
| ! | ACCAACCCAATTGGTGACAT+TGG | - | chr1.4:26456266-26456285 | None:intergenic | 45.0% |
| ! | CATGACACTCAGGTGGTTTT+AGG | - | chr1.4:26456875-26456894 | None:intergenic | 45.0% |
| ! | GCACCAATGGTGGAAATGTT+AGG | - | chr1.4:26456996-26457015 | None:intergenic | 45.0% |
| ! | TCTTGACACATGCCTTGTTG+AGG | - | chr1.4:26458609-26458628 | None:intergenic | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+GGG | - | chr1.4:26458495-26458514 | None:intergenic | 45.0% |
| !! | AAGTTGCGGTTTGGTTTGGT+TGG | - | chr1.4:26457786-26457805 | None:intergenic | 45.0% |
| !! | CCAATTGGGTTGGTACCATT+TGG | + | chr1.4:26456272-26456291 | MS.gene053354:CDS | 45.0% |
| !! | GATAATGTGGGTTGGACTCT+TGG | + | chr1.4:26457137-26457156 | MS.gene053354:CDS | 45.0% |
| !! | GCAACTTGGATTGGTTCGTA+TGG | - | chr1.4:26458177-26458196 | None:intergenic | 45.0% |
| !! | TTAATTAAGTAAAAATATAT+AGG | + | chr1.4:26456417-26456436 | MS.gene053354:intron | 5.0% |
| ACTCTAGCAGTAGGAACAGG+TGG | + | chr1.4:26456963-26456982 | MS.gene053354:CDS | 50.0% | |
| AGACATGCCCTGCCAATTTG+AGG | - | chr1.4:26456823-26456842 | None:intergenic | 50.0% | |
| CAAAGGTCCAATAACGGCCA+AGG | - | chr1.4:26456336-26456355 | None:intergenic | 50.0% | |
| CCTCCAATTCCTAGGGAAAG+AGG | - | chr1.4:26457596-26457615 | None:intergenic | 50.0% | |
| CCTCTTTCCCTAGGAATTGG+AGG | + | chr1.4:26457593-26457612 | MS.gene053354:intron | 50.0% | |
| CTCCTTCAAAGGATGGGCAT+AGG | + | chr1.4:26458931-26458950 | MS.gene053354:CDS | 50.0% | |
| GCACTCTACACTCTAGCAGT+AGG | + | chr1.4:26456954-26456973 | MS.gene053354:CDS | 50.0% | |
| GTGAGCTTAGCTCAGTTGGT+AGG | - | chr1.4:26458496-26458515 | None:intergenic | 50.0% | |
| TATGTTGCTGACGCCTACCT+TGG | + | chr1.4:26456316-26456335 | MS.gene053354:CDS | 50.0% | |
| TTAGTGAAGGGACTCCCTGT+AGG | - | chr1.4:26457242-26457261 | None:intergenic | 50.0% | |
| ! | TGCATTCAGTAGGGTGTTCG+CGG | - | chr1.4:26458306-26458325 | None:intergenic | 50.0% |
| !! | TTGGATTGGTTCGTATGGCG+CGG | - | chr1.4:26458172-26458191 | None:intergenic | 50.0% |
| !!! | CACTCAGGTGGTTTTAGGCT+TGG | - | chr1.4:26456870-26456889 | None:intergenic | 50.0% |
| ACGCCTACCTTGGCCGTTAT+TGG | + | chr1.4:26456326-26456345 | MS.gene053354:CDS | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr1.4:26458497-26458516 | MS.gene053354:intron | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr1.4:26458500-26458519 | None:intergenic | 55.0% | |
| CTGAGCTAAGCTCACGAGGA+CGG | + | chr1.4:26458501-26458520 | MS.gene053354:intron | 55.0% | |
| GGTCCAATAACGGCCAAGGT+AGG | - | chr1.4:26456332-26456351 | None:intergenic | 55.0% | |
| GGTGGTCGAGGTTTGAACCT+CGG | + | chr1.4:26458446-26458465 | MS.gene053354:intron | 55.0% | |
| ! | TCAGTAGGGTGTTCGCGGTG+CGG | - | chr1.4:26458301-26458320 | None:intergenic | 60.0% |
| !! | GTTCGCGGTGCGGTTTGGTT+CGG | - | chr1.4:26458291-26458310 | None:intergenic | 60.0% |
| ! | AGGGTGTTCGCGGTGCGGTT+TGG | - | chr1.4:26458296-26458315 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 26456164 | 26459012 | 26456164 | ID=MS.gene053354 |
| chr1.4 | mRNA | 26456164 | 26459012 | 26456164 | ID=MS.gene053354.t1;Parent=MS.gene053354 |
| chr1.4 | exon | 26456164 | 26456381 | 26456164 | ID=MS.gene053354.t1.exon1;Parent=MS.gene053354.t1 |
| chr1.4 | CDS | 26456164 | 26456381 | 26456164 | ID=cds.MS.gene053354.t1;Parent=MS.gene053354.t1 |
| chr1.4 | exon | 26456834 | 26457399 | 26456834 | ID=MS.gene053354.t1.exon2;Parent=MS.gene053354.t1 |
| chr1.4 | CDS | 26456834 | 26457399 | 26456834 | ID=cds.MS.gene053354.t1;Parent=MS.gene053354.t1 |
| chr1.4 | exon | 26458603 | 26459012 | 26458603 | ID=MS.gene053354.t1.exon3;Parent=MS.gene053354.t1 |
| chr1.4 | CDS | 26458603 | 26459012 | 26458603 | ID=cds.MS.gene053354.t1;Parent=MS.gene053354.t1 |
| Gene Sequence |
| Protein sequence |
