Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71324.t1 | XP_013464618.1 | 91.4 | 631 | 42 | 3 | 1 | 624 | 1 | 626 | 0.00E+00 | 1113.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71324.t1 | A0A072VB27 | 91.4 | 631 | 42 | 3 | 1 | 624 | 1 | 626 | 0.0e+00 | 1113.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060669 | MS.gene71324 | 0.807014 | 6.22E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71324.t1 | MTR_2g078390 | 92.076 | 631 | 38 | 3 | 1 | 624 | 1 | 626 | 0.0 | 1142 |
| MS.gene71324.t1 | MTR_2g078390 | 92.272 | 427 | 23 | 2 | 1 | 420 | 1 | 424 | 0.0 | 753 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71324.t1 | AT1G53200 | 32.897 | 611 | 369 | 13 | 23 | 620 | 29 | 611 | 2.07e-91 | 295 |
| MS.gene71324.t1 | AT1G53200 | 34.157 | 445 | 255 | 12 | 189 | 620 | 53 | 472 | 3.06e-67 | 227 |
Find 122 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACAACCGTTTCAAATTT+TGG | 0.046983 | 2.1:-22082641 | MS.gene71324:CDS |
| TCACAAATCTTTATGATATT+TGG | 0.111730 | 2.1:-22081522 | MS.gene71324:CDS |
| TGCTCCATTCAAAATGTAAA+AGG | 0.178752 | 2.1:-22073150 | MS.gene71324:CDS |
| CAATGATTTATTGCGATTCT+TGG | 0.202579 | 2.1:-22072878 | MS.gene71324:CDS |
| GGAAACAATCATATCTTTAT+TGG | 0.207231 | 2.1:+22079534 | None:intergenic |
| TTCTACGAGCTGTGGTATTC+TGG | 0.211645 | 2.1:-22079793 | MS.gene71324:CDS |
| ATGGGTGATGGGCAAATTTC+TGG | 0.238821 | 2.1:-22079568 | MS.gene71324:CDS |
| ATGCTCCATACCTGAATTAA+TGG | 0.243542 | 2.1:+22078868 | None:intergenic |
| CTATGGTCTTGAATCTCTTC+TGG | 0.293428 | 2.1:-22073280 | MS.gene71324:CDS |
| ACTGATCTCTGTGCAGGATA+TGG | 0.296067 | 2.1:+22078971 | None:intergenic |
| AATCTGAGTCACATTGATAT+TGG | 0.321184 | 2.1:+22079599 | None:intergenic |
| TAAAGATTTGTGATCCTTGT+TGG | 0.321614 | 2.1:+22081532 | None:intergenic |
| AGCATTACTTCCATTAATTC+AGG | 0.321669 | 2.1:-22078878 | MS.gene71324:intron |
| TGCTCTGTTCTGAGAGGTTT+AGG | 0.347230 | 2.1:+22082777 | None:intergenic |
| GGGCAAATTTCTGGGGAGAT+TGG | 0.347692 | 2.1:-22079559 | MS.gene71324:CDS |
| GATATTTGGTCAAAGAAGAT+TGG | 0.350852 | 2.1:-22081508 | MS.gene71324:CDS |
| TTTGAGTCAAATATTAAAAC+TGG | 0.351863 | 2.1:-22073006 | MS.gene71324:CDS |
| GACTCGTTAATCAGCAAGAT+TGG | 0.359537 | 2.1:-22082725 | MS.gene71324:CDS |
| CCGTTTGTGAGTTCTCTTGA+CGG | 0.362937 | 2.1:+22079728 | None:intergenic |
| ACTTATAAAGTTTCACCAAA+TGG | 0.372174 | 2.1:-22073423 | MS.gene71324:CDS |
| CAGACAGCTGAGATTCTGTT+TGG | 0.375487 | 2.1:+22080553 | None:intergenic |
| TGATATGTTGCAGGGTACTA+TGG | 0.378590 | 2.1:-22073297 | MS.gene71324:intron |
| ATCGTCCTTTCTCTTGCGTC+GGG | 0.384202 | 2.1:+22082887 | None:intergenic |
| CATACTGATGATCTTGATCT+TGG | 0.388425 | 2.1:-22079409 | MS.gene71324:intron |
| TCTCTCCACTTAAATTCATC+TGG | 0.389703 | 2.1:+22079766 | None:intergenic |
| AGGGAACCTCATTCAGCAAC+AGG | 0.396382 | 2.1:-22079705 | MS.gene71324:CDS |
| AGGGAATCTCATTCAGCAAC+AGG | 0.401600 | 2.1:-22079672 | MS.gene71324:CDS |
| GAGCAGGTATGCAGTTCAAT+TGG | 0.404846 | 2.1:-22080613 | MS.gene71324:CDS |
| TGCAGAAAATTATTTACGTC+TGG | 0.413203 | 2.1:-22078929 | MS.gene71324:CDS |
| AATATTTATAGAGGGTATAT+CGG | 0.416338 | 2.1:-22073088 | MS.gene71324:CDS |
| AATTTGAAACGGTTGTTGTT+GGG | 0.419255 | 2.1:+22082645 | None:intergenic |
| TCTACGAGCTGTGGTATTCT+GGG | 0.420238 | 2.1:-22079792 | MS.gene71324:CDS |
| CATATTCTGTACTCCCAATC+AGG | 0.422877 | 2.1:-22077465 | MS.gene71324:intron |
| AGGGTATATCGGCAAAATCT+TGG | 0.424429 | 2.1:-22073077 | MS.gene71324:CDS |
| ATCTGAGTCACATTGATATT+GGG | 0.426327 | 2.1:+22079600 | None:intergenic |
| CCCATCATCATCTTTGAAAC+GGG | 0.427031 | 2.1:+22079823 | None:intergenic |
| TGGGTGATGGGCAAATTTCT+GGG | 0.427046 | 2.1:-22079567 | MS.gene71324:CDS |
| CTTATAAAGTTTCACCAAAT+GGG | 0.431244 | 2.1:-22073422 | MS.gene71324:intron |
| AAACCTCCTACCTCAATGAT+TGG | 0.431981 | 2.1:+22079472 | None:intergenic |
| TGACAGCTGCTGTTGATTAG+AGG | 0.432399 | 2.1:-22077535 | MS.gene71324:intron |
| AAATTTGAAACGGTTGTTGT+TGG | 0.436770 | 2.1:+22082644 | None:intergenic |
| TACGAATGAAGGTACCCATT+TGG | 0.438397 | 2.1:+22073408 | None:intergenic |
| TAAAGATATGATTGTTTCCA+TGG | 0.440531 | 2.1:-22079530 | MS.gene71324:CDS |
| GATTCATCTGTCATGGGTGA+TGG | 0.440687 | 2.1:-22079580 | MS.gene71324:CDS |
| ATTCAGCAACAGGGTACATA+TGG | 0.446434 | 2.1:-22079695 | MS.gene71324:CDS |
| ATAAGGGATGTGTACCTGAT+TGG | 0.450077 | 2.1:+22077451 | None:intergenic |
| TAAGGGATGTGTACCTGATT+GGG | 0.452135 | 2.1:+22077452 | None:intergenic |
| CAGAATCTCAGCTGTCTGTA+TGG | 0.452523 | 2.1:-22080548 | MS.gene71324:intron |
| ATGTAGACGTGTGGTCTTCA+AGG | 0.456750 | 2.1:+22073172 | None:intergenic |
| ATTTAGGGAAACTTGATTTG+TGG | 0.458709 | 2.1:-22079038 | MS.gene71324:intron |
| CGTCCTTTCTCTTGCGTCGG+GGG | 0.460303 | 2.1:+22082889 | None:intergenic |
| ACCCATCATCATCTTTGAAA+CGG | 0.462419 | 2.1:+22079822 | None:intergenic |
| GTTCTTAGTGTTTACTTGAA+AGG | 0.465759 | 2.1:-22082687 | MS.gene71324:CDS |
| GGAATCTTCGCTGTCGGTGG+TGG | 0.466273 | 2.1:-22073056 | MS.gene71324:CDS |
| TTTCTGAAATATACCTCTAC+TGG | 0.468253 | 2.1:+22081469 | None:intergenic |
| CCCGTTTCAAAGATGATGAT+GGG | 0.470053 | 2.1:-22079823 | MS.gene71324:CDS |
| CTCTCAGAACAGAGCATCGC+CGG | 0.472530 | 2.1:-22082770 | MS.gene71324:CDS |
| TGGTTTCGTTGGAGTAATGT+TGG | 0.483320 | 2.1:+22082914 | None:intergenic |
| GCATGTGCATCGTACATGTA+TGG | 0.486793 | 2.1:-22072955 | MS.gene71324:CDS |
| AAGGTCTTGTAAGAGATAAA+CGG | 0.490170 | 2.1:+22082820 | None:intergenic |
| CATCGTCCTTTCTCTTGCGT+CGG | 0.491408 | 2.1:+22082886 | None:intergenic |
| GCTAAAGAATAACGACATGT+TGG | 0.495921 | 2.1:+22073449 | None:intergenic |
| TCCCGTTTCAAAGATGATGA+TGG | 0.496382 | 2.1:-22079824 | MS.gene71324:CDS |
| ACTCGTTAATCAGCAAGATT+GGG | 0.501434 | 2.1:-22082724 | MS.gene71324:CDS |
| CATTAAACTGATCTCTGTGC+AGG | 0.506396 | 2.1:+22078965 | None:intergenic |
| GAGCACAAGAGAAATTCATA+TGG | 0.511099 | 2.1:-22072853 | MS.gene71324:CDS |
| CATTCAAAATGTAAAAGGGC+AGG | 0.516124 | 2.1:-22073145 | MS.gene71324:CDS |
| AGAATACCCAAAATTTGAAA+CGG | 0.524639 | 2.1:+22082634 | None:intergenic |
| GCTCCATTCAAAATGTAAAA+GGG | 0.524806 | 2.1:-22073149 | MS.gene71324:CDS |
| GGATTCCAGATGAATTTAAG+TGG | 0.524814 | 2.1:-22079771 | MS.gene71324:CDS |
| CAGAATATGAACTATTGCAT+TGG | 0.528562 | 2.1:+22077479 | None:intergenic |
| CAGATGCAGAATACAATACA+TGG | 0.529334 | 2.1:-22073230 | MS.gene71324:CDS |
| TGTAGACGTGTGGTCTTCAA+GGG | 0.535444 | 2.1:+22073173 | None:intergenic |
| ATTCATCTGTCATGGGTGAT+GGG | 0.535729 | 2.1:-22079579 | MS.gene71324:CDS |
| TTGTTGTTCCGTCTTATGCA+AGG | 0.541275 | 2.1:-22080585 | MS.gene71324:CDS |
| ATCTCATTCAGCAACAGGGT+TGG | 0.545631 | 2.1:-22079667 | MS.gene71324:CDS |
| CATCCAATCATTGAGGTAGG+AGG | 0.550659 | 2.1:-22079475 | MS.gene71324:CDS |
| TCACGCAGACCGTTCCCCTC+CGG | 0.553656 | 2.1:+22078997 | None:intergenic |
| AGCAATGGAAGTCGAAGCGT+TGG | 0.555789 | 2.1:-22082955 | None:intergenic |
| CAGCAACAGGGTACATATGG+AGG | 0.556031 | 2.1:-22079692 | MS.gene71324:CDS |
| CAGAGACGAAGAACGTAAGA+AGG | 0.556102 | 2.1:+22082801 | None:intergenic |
| ATGGTTAGCATCAACATCCA+TGG | 0.556205 | 2.1:+22079513 | None:intergenic |
| TGACTCAGATTCATCTGTCA+TGG | 0.560390 | 2.1:-22079587 | MS.gene71324:CDS |
| ATGTACCCTGTTGCTGAATG+AGG | 0.560495 | 2.1:+22079699 | None:intergenic |
| GTCCTTTCTCTTGCGTCGGG+GGG | 0.562884 | 2.1:+22082890 | None:intergenic |
| CTTGGAATCTTCGCTGTCGG+TGG | 0.563284 | 2.1:-22073059 | MS.gene71324:CDS |
| ACAGGGTTGGACAGTCAGAA+TGG | 0.565846 | 2.1:-22079654 | MS.gene71324:CDS |
| TTCAAAATGTAAAAGGGCAG+GGG | 0.566206 | 2.1:-22073143 | MS.gene71324:CDS |
| ATTCAAAATGTAAAAGGGCA+GGG | 0.568958 | 2.1:-22073144 | MS.gene71324:CDS |
| CAAGATTGGGTTGCAGCTAG+TGG | 0.569050 | 2.1:-22082711 | MS.gene71324:CDS |
| TCGTCCTTTCTCTTGCGTCG+GGG | 0.577566 | 2.1:+22082888 | None:intergenic |
| GTTCCCCTCCGGAAAACGCA+AGG | 0.580836 | 2.1:+22079008 | None:intergenic |
| AGATTGGATTAATGAAGACT+TGG | 0.581929 | 2.1:-22081492 | MS.gene71324:CDS |
| CCGTCAAGAGAACTCACAAA+CGG | 0.588500 | 2.1:-22079728 | MS.gene71324:CDS |
| AAAATCACATCCAATCATTG+AGG | 0.588856 | 2.1:-22079482 | MS.gene71324:CDS |
| CTAACCACCAACTCTCCGCC+CGG | 0.596614 | 2.1:-22082863 | MS.gene71324:CDS |
| TCACATCCAATCATTGAGGT+AGG | 0.599389 | 2.1:-22079478 | MS.gene71324:CDS |
| AATGAAGACTTGGCCAGTAG+AGG | 0.600519 | 2.1:-22081482 | MS.gene71324:intron |
| AGAGTTCAGCTATGTTGTGA+AGG | 0.602120 | 2.1:-22072929 | MS.gene71324:CDS |
| GCAGCAAATACTGCAATCTC+CGG | 0.603469 | 2.1:+22082751 | None:intergenic |
| AATCTTGGAATCTTCGCTGT+CGG | 0.606501 | 2.1:-22073062 | MS.gene71324:CDS |
| CGGCGATGCTCTGTTCTGAG+AGG | 0.610034 | 2.1:+22082771 | None:intergenic |
| AGTATGCAAGATATCTTGTG+TGG | 0.617781 | 2.1:+22079426 | None:intergenic |
| AGCAACAGGGTACATATGGA+GGG | 0.617900 | 2.1:-22079691 | MS.gene71324:CDS |
| TAGCATCGCCTTGCATAAGA+CGG | 0.619281 | 2.1:+22080577 | None:intergenic |
| TTCCCCTCCGGAAAACGCAA+GGG | 0.629792 | 2.1:+22079009 | None:intergenic |
| AAGTAATGCTGCTGATGCAA+AGG | 0.630805 | 2.1:+22078891 | None:intergenic |
| TAATTCAGTTGAGTCGCACA+TGG | 0.631264 | 2.1:-22079629 | MS.gene71324:CDS |
| TGCAGAATACAATACATGGA+AGG | 0.632136 | 2.1:-22073226 | MS.gene71324:CDS |
| GGGTGATGGGCAAATTTCTG+GGG | 0.633440 | 2.1:-22079566 | MS.gene71324:CDS |
| GACTCAGATTCATCTGTCAT+GGG | 0.637315 | 2.1:-22079586 | MS.gene71324:CDS |
| CAAGAGAACTCACAAACGGA+GGG | 0.637632 | 2.1:-22079724 | MS.gene71324:CDS |
| GTGATTTACAGTTACTCACA+TGG | 0.648324 | 2.1:-22072984 | MS.gene71324:CDS |
| GTATGCAAGATATCTTGTGT+GGG | 0.649348 | 2.1:+22079427 | None:intergenic |
| GGGAATCTCATTCAGCAACA+GGG | 0.655502 | 2.1:-22079671 | MS.gene71324:CDS |
| GTTTGACATTCTACGAGCTG+TGG | 0.664988 | 2.1:-22079801 | MS.gene71324:CDS |
| TCAAGAGAACTCACAAACGG+AGG | 0.667122 | 2.1:-22079725 | MS.gene71324:CDS |
| GGAGATTGCAGTATTTGCTG+CGG | 0.680529 | 2.1:-22082749 | MS.gene71324:CDS |
| GGGAACCTCATTCAGCAACA+GGG | 0.682719 | 2.1:-22079704 | MS.gene71324:CDS |
| GAATGGAGCATGTAGACGTG+TGG | 0.691338 | 2.1:+22073163 | None:intergenic |
| GTAGACGTGTGGTCTTCAAG+GGG | 0.694535 | 2.1:+22073174 | None:intergenic |
| ACTATTATATGAATCCAACA+AGG | 0.729245 | 2.1:-22081546 | MS.gene71324:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 22072828 | 22082973 | 22072828 | ID=MS.gene71324 |
| chr2.1 | mRNA | 22072828 | 22082973 | 22072828 | ID=MS.gene71324.t1;Parent=MS.gene71324 |
| chr2.1 | exon | 22082641 | 22082973 | 22082641 | ID=MS.gene71324.t1.exon1;Parent=MS.gene71324.t1 |
| chr2.1 | CDS | 22082641 | 22082973 | 22082641 | ID=cds.MS.gene71324.t1;Parent=MS.gene71324.t1 |
| chr2.1 | exon | 22081483 | 22081599 | 22081483 | ID=MS.gene71324.t1.exon2;Parent=MS.gene71324.t1 |
| chr2.1 | CDS | 22081483 | 22081599 | 22081483 | ID=cds.MS.gene71324.t1;Parent=MS.gene71324.t1 |
| chr2.1 | exon | 22080549 | 22080634 | 22080549 | ID=MS.gene71324.t1.exon3;Parent=MS.gene71324.t1 |
| chr2.1 | CDS | 22080549 | 22080634 | 22080549 | ID=cds.MS.gene71324.t1;Parent=MS.gene71324.t1 |
| chr2.1 | exon | 22079410 | 22079873 | 22079410 | ID=MS.gene71324.t1.exon4;Parent=MS.gene71324.t1 |
| chr2.1 | CDS | 22079410 | 22079873 | 22079410 | ID=cds.MS.gene71324.t1;Parent=MS.gene71324.t1 |
| chr2.1 | exon | 22078879 | 22079054 | 22078879 | ID=MS.gene71324.t1.exon5;Parent=MS.gene71324.t1 |
| chr2.1 | CDS | 22078879 | 22079054 | 22078879 | ID=cds.MS.gene71324.t1;Parent=MS.gene71324.t1 |
| chr2.1 | exon | 22077466 | 22077551 | 22077466 | ID=MS.gene71324.t1.exon6;Parent=MS.gene71324.t1 |
| chr2.1 | CDS | 22077466 | 22077551 | 22077466 | ID=cds.MS.gene71324.t1;Parent=MS.gene71324.t1 |
| chr2.1 | exon | 22073423 | 22073556 | 22073423 | ID=MS.gene71324.t1.exon7;Parent=MS.gene71324.t1 |
| chr2.1 | CDS | 22073423 | 22073556 | 22073423 | ID=cds.MS.gene71324.t1;Parent=MS.gene71324.t1 |
| chr2.1 | exon | 22072828 | 22073306 | 22072828 | ID=MS.gene71324.t1.exon8;Parent=MS.gene71324.t1 |
| chr2.1 | CDS | 22072828 | 22073306 | 22072828 | ID=cds.MS.gene71324.t1;Parent=MS.gene71324.t1 |
| Gene Sequence |
| Protein sequence |