Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71327.t1 | XP_013467074.1 | 98.5 | 397 | 6 | 0 | 1 | 397 | 40 | 436 | 3.10E-219 | 770.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71327.t1 | Q9FNL7 | 70.6 | 398 | 115 | 2 | 1 | 397 | 40 | 436 | 1.3e-157 | 557.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71327.t1 | A0A072VGD9 | 98.5 | 397 | 6 | 0 | 1 | 397 | 40 | 436 | 2.3e-219 | 770.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053354 | MS.gene71327 | 0.984338 | 2.86E-160 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 92 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGTTCATATAGTTCTTT+AGG | 0.172531 | 1.4:+26540728 | None:intergenic |
| ACGCCTACCTTGGCCGTTAT+TGG | 0.203711 | 1.4:-26541722 | MS.gene71327:CDS |
| TTTGAGAGAATGGCTTATTA+TGG | 0.210968 | 1.4:-26541873 | MS.gene71327:CDS |
| ATTTGGATCACTCCAATATT+AGG | 0.239092 | 1.4:-26541759 | MS.gene71327:CDS |
| GTCTCCTCTACATGTGTAAC+TGG | 0.243014 | 1.4:+26539387 | None:intergenic |
| CATAATTCATATAGTGATTA+TGG | 0.284425 | 1.4:-26539091 | MS.gene71327:CDS |
| AGAACTATATGAACTTGATT+TGG | 0.287269 | 1.4:-26540723 | MS.gene71327:CDS |
| GATCATTCTTATCATTTGTT+TGG | 0.294014 | 1.4:+26539365 | None:intergenic |
| CTAAAACAGAATTTGCAAAA+AGG | 0.325782 | 1.4:+26540945 | None:intergenic |
| GGATGTTCAGCATCTTTATT+GGG | 0.330214 | 1.4:-26540970 | MS.gene71327:CDS |
| AAAATTCCACCAGCAAGTTT+AGG | 0.331725 | 1.4:-26539240 | MS.gene71327:CDS |
| AGGGAGTCCCTTCACTAAAA+TGG | 0.333057 | 1.4:-26540804 | MS.gene71327:CDS |
| CCAATTGGGTTGGTACCATT+TGG | 0.335195 | 1.4:-26541776 | MS.gene71327:CDS |
| TGGATGTTCAGCATCTTTAT+TGG | 0.338681 | 1.4:-26540971 | MS.gene71327:CDS |
| CAAGTTCATATAGTTCTTTA+GGG | 0.338874 | 1.4:+26540729 | None:intergenic |
| TGCTTCCTTTATCTACCTAT+TGG | 0.339032 | 1.4:-26541688 | MS.gene71327:intron |
| GCAACATAAGCACCTAATAT+TGG | 0.342872 | 1.4:+26541747 | None:intergenic |
| CAACTTTCACTGAAAGATAT+AGG | 0.345759 | 1.4:-26539062 | MS.gene71327:CDS |
| TTGAGAGAATGGCTTATTAT+GGG | 0.354991 | 1.4:-26541872 | MS.gene71327:CDS |
| CTTCTACCAATGTCACCAAT+TGG | 0.359761 | 1.4:-26541791 | MS.gene71327:CDS |
| ATAAACTCTCATTCTTCAAT+TGG | 0.378779 | 1.4:-26540994 | MS.gene71327:CDS |
| GGTTATGCACTTCCAACTCT+TGG | 0.392524 | 1.4:-26540890 | MS.gene71327:CDS |
| GATAATGTGGGTTGGACTCT+TGG | 0.393984 | 1.4:-26540911 | MS.gene71327:CDS |
| TCTTTAGGGTCACTAGGAAT+AGG | 0.396153 | 1.4:+26540743 | None:intergenic |
| ACATACCAATAGGTAGATAA+AGG | 0.397338 | 1.4:+26541683 | None:intergenic |
| ATTAATGTAGTAGCCATGAT+TGG | 0.405581 | 1.4:+26539342 | None:intergenic |
| GCACCAATGGTGGAAATGTT+AGG | 0.424088 | 1.4:+26541055 | None:intergenic |
| TTGTAAAGATTATGCAAAGA+TGG | 0.426548 | 1.4:-26539164 | MS.gene71327:CDS |
| TTCCTATGCCCATCCTTTGA+AGG | 0.429082 | 1.4:+26539115 | None:intergenic |
| ATTTGAGCAATCATTGTACT+AGG | 0.430351 | 1.4:+26539318 | None:intergenic |
| TTACAGCTAGTAGTGTTCTA+TGG | 0.437692 | 1.4:-26541118 | MS.gene71327:CDS |
| TTCTACCAATGTCACCAATT+GGG | 0.441799 | 1.4:-26541790 | MS.gene71327:CDS |
| AACTCTCATTCTTCAATTGG+TGG | 0.444499 | 1.4:-26540991 | MS.gene71327:CDS |
| GTATGAGGTATTTGAGAGAA+TGG | 0.453573 | 1.4:-26541883 | MS.gene71327:CDS |
| ACCACCTGAGTGTCATGAAA+TGG | 0.453752 | 1.4:-26541170 | MS.gene71327:CDS |
| TTGTGGCTGCTATGAAGAAA+TGG | 0.454963 | 1.4:-26540772 | MS.gene71327:CDS |
| CCAAATGGTACCAACCCAAT+TGG | 0.470302 | 1.4:+26541776 | None:intergenic |
| TGAAGGAGAGTAATTCCTCT+AGG | 0.480380 | 1.4:+26539132 | None:intergenic |
| TACACTCTAGCAGTAGGAAC+AGG | 0.482514 | 1.4:-26541088 | MS.gene71327:CDS |
| TATAGACATAAAGTACCTAC+AGG | 0.484411 | 1.4:-26540824 | MS.gene71327:CDS |
| TATGTTGCTGACGCCTACCT+TGG | 0.492497 | 1.4:-26541732 | MS.gene71327:CDS |
| TTGGAAGAGTATGCAAAGAA+AGG | 0.494172 | 1.4:-26540704 | MS.gene71327:CDS |
| ACAAATGTACCTAAACTTGC+TGG | 0.498006 | 1.4:+26539231 | None:intergenic |
| ACAACACTTGATAGAGGCAT+TGG | 0.500358 | 1.4:-26539270 | MS.gene71327:CDS |
| GATAAGAATGATCCCAATCA+TGG | 0.502771 | 1.4:-26539355 | MS.gene71327:CDS |
| AGTCTATATACAAGATAATG+TGG | 0.504069 | 1.4:-26540924 | MS.gene71327:CDS |
| ATCAAATTGATCAGCACCAA+TGG | 0.509830 | 1.4:+26541042 | None:intergenic |
| GAAGGAGAGTAATTCCTCTA+GGG | 0.517835 | 1.4:+26539133 | None:intergenic |
| AAGCCTAACATTTCCACCAT+TGG | 0.518336 | 1.4:-26541058 | MS.gene71327:CDS |
| TATAGTTCTTTAGGGTCACT+AGG | 0.526463 | 1.4:+26540737 | None:intergenic |
| CTTATACCTCAATGTGGGAG+TGG | 0.531336 | 1.4:+26540664 | None:intergenic |
| AATTACTCTCCTTCAAAGGA+TGG | 0.536918 | 1.4:-26539124 | MS.gene71327:CDS |
| TCCCTTCACTAAAATGGCTA+AGG | 0.542023 | 1.4:-26540798 | MS.gene71327:CDS |
| TTAATGTAGTAGCCATGATT+GGG | 0.543126 | 1.4:+26539343 | None:intergenic |
| GGTACTTTATGTCTATAGAA+TGG | 0.550764 | 1.4:+26540830 | None:intergenic |
| CAACACTTGATAGAGGCATT+GGG | 0.555650 | 1.4:-26539269 | MS.gene71327:CDS |
| TTGATTCCACTCCCACATTG+AGG | 0.555903 | 1.4:-26540670 | MS.gene71327:intron |
| TTAATAAAGAAGCTTCATCA+AGG | 0.556770 | 1.4:-26541825 | MS.gene71327:CDS |
| GATATTGCAAGTCCAAGAGT+TGG | 0.562877 | 1.4:+26540878 | None:intergenic |
| AAGACTAATTCAAGTACTAG+TGG | 0.564192 | 1.4:-26539423 | MS.gene71327:CDS |
| ACCAATGTCACCAATTGGGT+TGG | 0.565849 | 1.4:-26541786 | MS.gene71327:CDS |
| TCTTGACACATGCCTTGTTG+AGG | 0.569147 | 1.4:+26539442 | None:intergenic |
| ACCAACCCAATTGGTGACAT+TGG | 0.570728 | 1.4:+26541785 | None:intergenic |
| CTCCTTCAAAGGATGGGCAT+AGG | 0.570734 | 1.4:-26539117 | MS.gene71327:CDS |
| TAATATTGGAGTGATCCAAA+TGG | 0.571433 | 1.4:+26541761 | None:intergenic |
| CAGTAACAAAGGTCCAATAA+CGG | 0.571576 | 1.4:+26541709 | None:intergenic |
| GAGGAATTACTCTCCTTCAA+AGG | 0.576375 | 1.4:-26539128 | MS.gene71327:CDS |
| AATGTACCTAAACTTGCTGG+TGG | 0.578804 | 1.4:+26539234 | None:intergenic |
| ATATACAAGATAATGTGGGT+TGG | 0.583558 | 1.4:-26540919 | MS.gene71327:CDS |
| TCTCCTCTACATGTGTAACT+GGG | 0.590294 | 1.4:+26539388 | None:intergenic |
| ATTACTCTCCTTCAAAGGAT+GGG | 0.590754 | 1.4:-26539123 | MS.gene71327:CDS |
| CAAGGAACAACACTTGATAG+AGG | 0.596087 | 1.4:-26539276 | MS.gene71327:CDS |
| GTCTATATACAAGATAATGT+GGG | 0.599062 | 1.4:-26540923 | MS.gene71327:CDS |
| AATACACTATTTGTGAAGCA+AGG | 0.599414 | 1.4:-26539294 | MS.gene71327:CDS |
| GGTCCAATAACGGCCAAGGT+AGG | 0.599634 | 1.4:+26541719 | None:intergenic |
| AAATTGATCAGCACCAATGG+TGG | 0.600096 | 1.4:+26541045 | None:intergenic |
| AATGGATGTTACAAAATGCA+AGG | 0.601334 | 1.4:-26541152 | MS.gene71327:CDS |
| CAAAGGTCCAATAACGGCCA+AGG | 0.604327 | 1.4:+26541715 | None:intergenic |
| GATAAAGGAAGCAGTAACAA+AGG | 0.605026 | 1.4:+26541698 | None:intergenic |
| TAAAATGGCTAAGGTCATTG+TGG | 0.611474 | 1.4:-26540789 | MS.gene71327:CDS |
| ACTCTAGCAGTAGGAACAGG+TGG | 0.614419 | 1.4:-26541085 | MS.gene71327:CDS |
| GCACTCTACACTCTAGCAGT+AGG | 0.615235 | 1.4:-26541094 | MS.gene71327:CDS |
| TCCATTTCATGACACTCAGG+TGG | 0.620788 | 1.4:+26541169 | None:intergenic |
| GAACACTACTAGCTGTAATG+TGG | 0.621214 | 1.4:+26541123 | None:intergenic |
| ATGCCCAGTTACACATGTAG+AGG | 0.628339 | 1.4:-26539391 | MS.gene71327:CDS |
| ACATCCATTTCATGACACTC+AGG | 0.634209 | 1.4:+26541166 | None:intergenic |
| TTAGTGAAGGGACTCCCTGT+AGG | 0.634253 | 1.4:+26540809 | None:intergenic |
| TGGAACTTATACCTCAATGT+GGG | 0.647517 | 1.4:+26540659 | None:intergenic |
| ATGGAACTTATACCTCAATG+TGG | 0.655784 | 1.4:+26540658 | None:intergenic |
| ACTAATTCAAGTACTAGTGG+AGG | 0.670493 | 1.4:-26539420 | MS.gene71327:CDS |
| TGTATGCAGATTCCTCAACA+AGG | 0.703011 | 1.4:-26539454 | MS.gene71327:intron |
| ATAGACATAAAGTACCTACA+GGG | 0.722644 | 1.4:-26540823 | MS.gene71327:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAATTCTAAATATTTAT+AGG | - | chr1.4:26539623-26539642 | MS.gene71327:intron | 10.0% |
| !!! | AATATCTATCATAATATTTT+TGG | - | chr1.4:26540081-26540100 | MS.gene71327:intron | 10.0% |
| !!! | GAAAAATGAAATTTTAATAT+TGG | - | chr1.4:26540947-26540966 | MS.gene71327:CDS | 10.0% |
| !!! | TATTACTTATTTTTTAATTG+TGG | - | chr1.4:26541234-26541253 | MS.gene71327:intron | 10.0% |
| !! | AAATACTCATAAAAACTTAA+TGG | - | chr1.4:26540739-26540758 | MS.gene71327:CDS | 15.0% |
| !! | TGTATTTGTGAAAAAAAAAT+AGG | + | chr1.4:26540323-26540342 | None:intergenic | 15.0% |
| !!! | AAATGTGATTTTATTTTGTA+AGG | - | chr1.4:26539594-26539613 | MS.gene71327:intron | 15.0% |
| !!! | AATACATATGGAAAATTTTA+CGG | + | chr1.4:26539468-26539487 | None:intergenic | 15.0% |
| !!! | AGTATGATTTTATTTTTTAG+AGG | + | chr1.4:26539376-26539395 | None:intergenic | 15.0% |
| !!! | GTATGATTTTATTTTTTAGA+GGG | + | chr1.4:26539375-26539394 | None:intergenic | 15.0% |
| !!! | TTATTATTTTTCTTAAGTTG+CGG | + | chr1.4:26540694-26540713 | None:intergenic | 15.0% |
| !! | AAAATAGGGTTATATTTGAA+AGG | + | chr1.4:26539667-26539686 | None:intergenic | 20.0% |
| !! | AAATAGGGTTATATTTGAAA+GGG | + | chr1.4:26539666-26539685 | None:intergenic | 20.0% |
| !! | AACAATGATAGTATAAGTTT+AGG | + | chr1.4:26541437-26541456 | None:intergenic | 20.0% |
| !! | AATAGGTATTAAATCAAACA+TGG | + | chr1.4:26540306-26540325 | None:intergenic | 20.0% |
| !! | ATAAATTAAGACATACCAAT+AGG | + | chr1.4:26539272-26539291 | None:intergenic | 20.0% |
| !! | CATAATTCATATAGTGATTA+TGG | - | chr1.4:26541851-26541870 | MS.gene71327:CDS | 20.0% |
| !! | CATAGACTGTATTAAAAATA+TGG | + | chr1.4:26540918-26540937 | None:intergenic | 20.0% |
| !! | TAAAACAGAATTTGCAAAAA+GGG | + | chr1.4:26539999-26540018 | None:intergenic | 20.0% |
| !! | TATAAGTTTAGGAAAATTTG+AGG | + | chr1.4:26541426-26541445 | None:intergenic | 20.0% |
| !! | TTATTATCTAGTGTGAAATA+GGG | - | chr1.4:26539288-26539307 | MS.gene71327:CDS | 20.0% |
| !! | TTTATTATCTAGTGTGAAAT+AGG | - | chr1.4:26539287-26539306 | MS.gene71327:CDS | 20.0% |
| !!! | AATGCCTCAAATTTTTTTTT+TGG | - | chr1.4:26541319-26541338 | MS.gene71327:intron | 20.0% |
| !!! | ATATAACCCTATTTTATTGT+TGG | - | chr1.4:26539672-26539691 | MS.gene71327:intron | 20.0% |
| !!! | TATAACCCTATTTTATTGTT+GGG | - | chr1.4:26539673-26539692 | MS.gene71327:intron | 20.0% |
| !!! | TTTGACAGAAAATTTTTACA+GGG | + | chr1.4:26539528-26539547 | None:intergenic | 20.0% |
| !!! | TTTTGACAGAAAATTTTTAC+AGG | + | chr1.4:26539529-26539548 | None:intergenic | 20.0% |
| ! | AAAAGAAAATGCATGTCATT+CGG | - | chr1.4:26540516-26540535 | MS.gene71327:intron | 25.0% |
| ! | ACAAGGACTAAAAATACATA+TGG | + | chr1.4:26539480-26539499 | None:intergenic | 25.0% |
| ! | ACCACCAAAAAAAAAATTTG+AGG | + | chr1.4:26541326-26541345 | None:intergenic | 25.0% |
| ! | AGAACTATATGAACTTGATT+TGG | - | chr1.4:26540219-26540238 | MS.gene71327:intron | 25.0% |
| ! | AGTCTATATACAAGATAATG+TGG | - | chr1.4:26540018-26540037 | MS.gene71327:intron | 25.0% |
| ! | ATAAACTCTCATTCTTCAAT+TGG | - | chr1.4:26539948-26539967 | MS.gene71327:intron | 25.0% |
| ! | ATTCGACTAAGTTTCAATTA+AGG | - | chr1.4:26540369-26540388 | MS.gene71327:intron | 25.0% |
| ! | CAAGTTCATATAGTTCTTTA+GGG | + | chr1.4:26540216-26540235 | None:intergenic | 25.0% |
| ! | CTAAAACAGAATTTGCAAAA+AGG | + | chr1.4:26540000-26540019 | None:intergenic | 25.0% |
| ! | GAAAGGGTTAATTAAGTAAA+TGG | + | chr1.4:26539650-26539669 | None:intergenic | 25.0% |
| ! | GATCATTCTTATCATTTGTT+TGG | + | chr1.4:26541580-26541599 | None:intergenic | 25.0% |
| ! | GTCTATATACAAGATAATGT+GGG | - | chr1.4:26540019-26540038 | MS.gene71327:intron | 25.0% |
| ! | TCAAGTTCATATAGTTCTTT+AGG | + | chr1.4:26540217-26540236 | None:intergenic | 25.0% |
| ! | TTAATAAAGAAGCTTCATCA+AGG | - | chr1.4:26539117-26539136 | MS.gene71327:CDS | 25.0% |
| ! | TTAATACAGTCTATGTTGTT+GGG | - | chr1.4:26540923-26540942 | MS.gene71327:CDS | 25.0% |
| ! | TTGTAAAGATTATGCAAAGA+TGG | - | chr1.4:26541778-26541797 | MS.gene71327:CDS | 25.0% |
| ! | TTTAATACAGTCTATGTTGT+TGG | - | chr1.4:26540922-26540941 | MS.gene71327:CDS | 25.0% |
| !! | ACATTTTCCTTTAGCATTTT+AGG | + | chr1.4:26539561-26539580 | None:intergenic | 25.0% |
| !! | ATAGATGTTATGTTGGTAAA+TGG | - | chr1.4:26541295-26541314 | MS.gene71327:intron | 25.0% |
| !! | CATTTTCCTTTAGCATTTTA+GGG | + | chr1.4:26539560-26539579 | None:intergenic | 25.0% |
| !! | TACATACGGAAAATTTTACA+AGG | + | chr1.4:26539437-26539456 | None:intergenic | 25.0% |
| !! | TGTTGAAGGAAAATTTTACA+AGG | + | chr1.4:26539497-26539516 | None:intergenic | 25.0% |
| !! | TTACGGACTAAAAATACATA+CGG | + | chr1.4:26539451-26539470 | None:intergenic | 25.0% |
| !!! | AAACCAAATGAGATTTTTTG+CGG | + | chr1.4:26540597-26540616 | None:intergenic | 25.0% |
| !!! | TCTATCATAATATTTTTGGC+AGG | - | chr1.4:26540085-26540104 | MS.gene71327:intron | 25.0% |
| AAACCGCAAAAAATCTCATT+TGG | - | chr1.4:26540591-26540610 | MS.gene71327:intron | 30.0% | |
| AAGACTAATTCAAGTACTAG+TGG | - | chr1.4:26541519-26541538 | MS.gene71327:intron | 30.0% | |
| AATACACTATTTGTGAAGCA+AGG | - | chr1.4:26541648-26541667 | MS.gene71327:intron | 30.0% | |
| AATGGATGTTACAAAATGCA+AGG | - | chr1.4:26539790-26539809 | MS.gene71327:intron | 30.0% | |
| ACAGGGATTAAAAATGTTGA+AGG | + | chr1.4:26539511-26539530 | None:intergenic | 30.0% | |
| ACATACCAATAGGTAGATAA+AGG | + | chr1.4:26539262-26539281 | None:intergenic | 30.0% | |
| ATATACAAGATAATGTGGGT+TGG | - | chr1.4:26540023-26540042 | MS.gene71327:intron | 30.0% | |
| ATTAATGTAGTAGCCATGAT+TGG | + | chr1.4:26541603-26541622 | None:intergenic | 30.0% | |
| ATTCAAATGTGACCTCAAAT+TGG | - | chr1.4:26539702-26539721 | MS.gene71327:intron | 30.0% | |
| ATTGGCCCAACAATAAAATA+GGG | + | chr1.4:26539681-26539700 | None:intergenic | 30.0% | |
| ATTTGAGCAATCATTGTACT+AGG | + | chr1.4:26541627-26541646 | None:intergenic | 30.0% | |
| ATTTGGATCACTCCAATATT+AGG | - | chr1.4:26539183-26539202 | MS.gene71327:CDS | 30.0% | |
| CAACTAGATAGATGTTATGT+TGG | - | chr1.4:26541288-26541307 | MS.gene71327:intron | 30.0% | |
| CAACTTTCACTGAAAGATAT+AGG | - | chr1.4:26541880-26541899 | MS.gene71327:CDS | 30.0% | |
| CAATTAAGGACAAATCATTC+AGG | - | chr1.4:26540383-26540402 | MS.gene71327:intron | 30.0% | |
| GACAATGCATAATATATGCA+GGG | + | chr1.4:26541367-26541386 | None:intergenic | 30.0% | |
| GCAAAAAATCTCATTTGGTT+TGG | - | chr1.4:26540596-26540615 | MS.gene71327:intron | 30.0% | |
| GGTACTTTATGTCTATAGAA+TGG | + | chr1.4:26540115-26540134 | None:intergenic | 30.0% | |
| TAATATTGGAGTGATCCAAA+TGG | + | chr1.4:26539184-26539203 | None:intergenic | 30.0% | |
| TATTAAACCTCCAATTCCTA+GGG | + | chr1.4:26540497-26540516 | None:intergenic | 30.0% | |
| TGCTAAAGGAAAATGTTACA+TGG | - | chr1.4:26539565-26539584 | MS.gene71327:intron | 30.0% | |
| TTAATGTAGTAGCCATGATT+GGG | + | chr1.4:26541602-26541621 | None:intergenic | 30.0% | |
| TTATTAAACCTCCAATTCCT+AGG | + | chr1.4:26540498-26540517 | None:intergenic | 30.0% | |
| TTGAGAGAATGGCTTATTAT+GGG | - | chr1.4:26539070-26539089 | MS.gene71327:CDS | 30.0% | |
| TTTGAGAGAATGGCTTATTA+TGG | - | chr1.4:26539069-26539088 | MS.gene71327:CDS | 30.0% | |
| TTTGTCTACGTGACATATAT+AGG | + | chr1.4:26540722-26540741 | None:intergenic | 30.0% | |
| ! | AGATAAAAAAGCATGTGGTT+CGG | + | chr1.4:26541138-26541157 | None:intergenic | 30.0% |
| ! | ATAGACATAAAGTACCTACA+GGG | - | chr1.4:26540119-26540138 | MS.gene71327:intron | 30.0% |
| ! | TATAGACATAAAGTACCTAC+AGG | - | chr1.4:26540118-26540137 | MS.gene71327:intron | 30.0% |
| ! | TTTTGTCCCTAAAATGCTAA+AGG | - | chr1.4:26539551-26539570 | MS.gene71327:intron | 30.0% |
| !! | ATTTTTCTTAAGTTGCGGTT+TGG | + | chr1.4:26540689-26540708 | None:intergenic | 30.0% |
| !!! | AATGAGATTTTTTGCGGTTT+CGG | + | chr1.4:26540591-26540610 | None:intergenic | 30.0% |
| !!! | AATTTTTTTTTTGGTGGTCG+AGG | - | chr1.4:26541328-26541347 | MS.gene71327:intron | 30.0% |
| !!! | CAATTTTTTACTCAACCACA+TGG | - | chr1.4:26540631-26540650 | MS.gene71327:intron | 30.0% |
| !!! | GCCTCAAATTTTTTTTTTGG+TGG | - | chr1.4:26541322-26541341 | MS.gene71327:intron | 30.0% |
| !!! | TGCTTTTTTATCTCACGATT+AGG | - | chr1.4:26541145-26541164 | MS.gene71327:CDS | 30.0% |
| AAAATTCCACCAGCAAGTTT+AGG | - | chr1.4:26541702-26541721 | MS.gene71327:CDS | 35.0% | |
| AAATCGCAAACAAAACCATG+TGG | + | chr1.4:26540649-26540668 | None:intergenic | 35.0% | |
| AACTCTCATTCTTCAATTGG+TGG | - | chr1.4:26539951-26539970 | MS.gene71327:intron | 35.0% | |
| AATTACTCTCCTTCAAAGGA+TGG | - | chr1.4:26541818-26541837 | MS.gene71327:CDS | 35.0% | |
| ACAAATGTACCTAAACTTGC+TGG | + | chr1.4:26541714-26541733 | None:intergenic | 35.0% | |
| ACTAATTCAAGTACTAGTGG+AGG | - | chr1.4:26541522-26541541 | MS.gene71327:intron | 35.0% | |
| ATCAAATTGATCAGCACCAA+TGG | + | chr1.4:26539903-26539922 | None:intergenic | 35.0% | |
| ATGGAACTTATACCTCAATG+TGG | + | chr1.4:26540287-26540306 | None:intergenic | 35.0% | |
| ATGTCTTGTGTTGTATGCTA+GGG | - | chr1.4:26540540-26540559 | MS.gene71327:intron | 35.0% | |
| ATTACTCTCCTTCAAAGGAT+GGG | - | chr1.4:26541819-26541838 | MS.gene71327:CDS | 35.0% | |
| CAAACCAAATCAATGCAACT+TGG | + | chr1.4:26541085-26541104 | None:intergenic | 35.0% | |
| CAAATCAATGCAACTTGGAT+TGG | + | chr1.4:26541080-26541099 | None:intergenic | 35.0% | |
| CAGTAACAAAGGTCCAATAA+CGG | + | chr1.4:26539236-26539255 | None:intergenic | 35.0% | |
| CATTGGCCCAACAATAAAAT+AGG | + | chr1.4:26539682-26539701 | None:intergenic | 35.0% | |
| GAAAGAGGACTCTAGTAAAT+TGG | + | chr1.4:26540475-26540494 | None:intergenic | 35.0% | |
| GATAAAGGAAGCAGTAACAA+AGG | + | chr1.4:26539247-26539266 | None:intergenic | 35.0% | |
| GATAAGAATGATCCCAATCA+TGG | - | chr1.4:26541587-26541606 | MS.gene71327:intron | 35.0% | |
| GCAACATAAGCACCTAATAT+TGG | + | chr1.4:26539198-26539217 | None:intergenic | 35.0% | |
| GGACAATGCATAATATATGC+AGG | + | chr1.4:26541368-26541387 | None:intergenic | 35.0% | |
| GGATGTTCAGCATCTTTATT+GGG | - | chr1.4:26539972-26539991 | MS.gene71327:intron | 35.0% | |
| TAAAATGGCTAAGGTCATTG+TGG | - | chr1.4:26540153-26540172 | MS.gene71327:intron | 35.0% | |
| TATGTCTTGTGTTGTATGCT+AGG | - | chr1.4:26540539-26540558 | MS.gene71327:intron | 35.0% | |
| TGAAACTTAGTCGAATCACT+TGG | + | chr1.4:26540365-26540384 | None:intergenic | 35.0% | |
| TGAGGTCACATTTGAATCAT+TGG | + | chr1.4:26539699-26539718 | None:intergenic | 35.0% | |
| TGCTTCCTTTATCTACCTAT+TGG | - | chr1.4:26539254-26539273 | MS.gene71327:CDS | 35.0% | |
| TGGAACTTATACCTCAATGT+GGG | + | chr1.4:26540286-26540305 | None:intergenic | 35.0% | |
| TGGACTTATCATGTCAAGTT+TGG | - | chr1.4:26541254-26541273 | MS.gene71327:intron | 35.0% | |
| TGGATGTTCAGCATCTTTAT+TGG | - | chr1.4:26539971-26539990 | MS.gene71327:intron | 35.0% | |
| TTACAGCTAGTAGTGTTCTA+TGG | - | chr1.4:26539824-26539843 | MS.gene71327:intron | 35.0% | |
| TTCTACCAATGTCACCAATT+GGG | - | chr1.4:26539152-26539171 | MS.gene71327:CDS | 35.0% | |
| ! | GTATGAGGTATTTGAGAGAA+TGG | - | chr1.4:26539059-26539078 | MS.gene71327:CDS | 35.0% |
| ! | TCGTGAGATAAAAAAGCATG+TGG | + | chr1.4:26541143-26541162 | None:intergenic | 35.0% |
| ! | TGGTAAGTAAAGGTTGGTTA+AGG | + | chr1.4:26540440-26540459 | None:intergenic | 35.0% |
| ! | TTGGAAGAGTATGCAAAGAA+AGG | - | chr1.4:26540238-26540257 | MS.gene71327:intron | 35.0% |
| !! | ACCTTAGCCATTTTAGTGAA+GGG | + | chr1.4:26540148-26540167 | None:intergenic | 35.0% |
| !! | CAAGTTGCATTGATTTGGTT+TGG | - | chr1.4:26541083-26541102 | MS.gene71327:CDS | 35.0% |
| !! | CAATCCAAGTTGCATTGATT+TGG | - | chr1.4:26541078-26541097 | MS.gene71327:CDS | 35.0% |
| !! | TATAGTTCTTTAGGGTCACT+AGG | + | chr1.4:26540208-26540227 | None:intergenic | 35.0% |
| !!! | ATTTTTTGCGGTTTCGGTTT+GGG | + | chr1.4:26540585-26540604 | None:intergenic | 35.0% |
| AAATGTGACCTCAAATTGGC+AGG | - | chr1.4:26539706-26539725 | MS.gene71327:intron | 40.0% | |
| AAATTGATCAGCACCAATGG+TGG | + | chr1.4:26539900-26539919 | None:intergenic | 40.0% | |
| AAGCCTAACATTTCCACCAT+TGG | - | chr1.4:26539884-26539903 | MS.gene71327:intron | 40.0% | |
| AATGTGACCTCAAATTGGCA+GGG | - | chr1.4:26539707-26539726 | MS.gene71327:intron | 40.0% | |
| ACATCCATTTCATGACACTC+AGG | + | chr1.4:26539779-26539798 | None:intergenic | 40.0% | |
| CAAGGAACAACACTTGATAG+AGG | - | chr1.4:26541666-26541685 | MS.gene71327:intron | 40.0% | |
| CTTCTACCAATGTCACCAAT+TGG | - | chr1.4:26539151-26539170 | MS.gene71327:CDS | 40.0% | |
| GAACACTACTAGCTGTAATG+TGG | + | chr1.4:26539822-26539841 | None:intergenic | 40.0% | |
| GAAGGAGAGTAATTCCTCTA+GGG | + | chr1.4:26541812-26541831 | None:intergenic | 40.0% | |
| GAGGAATTACTCTCCTTCAA+AGG | - | chr1.4:26541814-26541833 | MS.gene71327:CDS | 40.0% | |
| GATATTGCAAGTCCAAGAGT+TGG | + | chr1.4:26540067-26540086 | None:intergenic | 40.0% | |
| TCCCTTCACTAAAATGGCTA+AGG | - | chr1.4:26540144-26540163 | MS.gene71327:intron | 40.0% | |
| TCTCCTCTACATGTGTAACT+GGG | + | chr1.4:26541557-26541576 | None:intergenic | 40.0% | |
| TGAAGGAGAGTAATTCCTCT+AGG | + | chr1.4:26541813-26541832 | None:intergenic | 40.0% | |
| TGTATGCAGATTCCTCAACA+AGG | - | chr1.4:26541488-26541507 | MS.gene71327:intron | 40.0% | |
| TGTCTTGTGTTGTATGCTAG+GGG | - | chr1.4:26540541-26540560 | MS.gene71327:intron | 40.0% | |
| TTGCCATGTTGCATTCAGTA+GGG | + | chr1.4:26541209-26541228 | None:intergenic | 40.0% | |
| TTGTGGCTGCTATGAAGAAA+TGG | - | chr1.4:26540170-26540189 | MS.gene71327:intron | 40.0% | |
| TTTGCCATGTTGCATTCAGT+AGG | + | chr1.4:26541210-26541229 | None:intergenic | 40.0% | |
| ! | ACAACACTTGATAGAGGCAT+TGG | - | chr1.4:26541672-26541691 | MS.gene71327:intron | 40.0% |
| ! | CTCTGTTGGTAAGTAAAGGT+TGG | + | chr1.4:26540446-26540465 | None:intergenic | 40.0% |
| ! | CTTGCTCTGTTGGTAAGTAA+AGG | + | chr1.4:26540450-26540469 | None:intergenic | 40.0% |
| ! | TAAATTGGAGCTTGCTCTGT+TGG | + | chr1.4:26540460-26540479 | None:intergenic | 40.0% |
| !! | AATGTACCTAAACTTGCTGG+TGG | + | chr1.4:26541711-26541730 | None:intergenic | 40.0% |
| !! | AGATGGACTAAAAACCCTAG+AGG | - | chr1.4:26541795-26541814 | MS.gene71327:CDS | 40.0% |
| !! | CAACACTTGATAGAGGCATT+GGG | - | chr1.4:26541673-26541692 | MS.gene71327:intron | 40.0% |
| !! | GACCTTAGCCATTTTAGTGA+AGG | + | chr1.4:26540149-26540168 | None:intergenic | 40.0% |
| !! | TCTTAAGTTGCGGTTTGGTT+TGG | + | chr1.4:26540684-26540703 | None:intergenic | 40.0% |
| !! | TCTTTAGGGTCACTAGGAAT+AGG | + | chr1.4:26540202-26540221 | None:intergenic | 40.0% |
| !!! | GATTTTTTGCGGTTTCGGTT+TGG | + | chr1.4:26540586-26540605 | None:intergenic | 40.0% |
| !!! | GGTTTCGGTTTGGGTTTTTT+CGG | + | chr1.4:26540576-26540595 | None:intergenic | 40.0% |
| ACACCCTACTGAATGCAACA+TGG | - | chr1.4:26541203-26541222 | MS.gene71327:CDS | 45.0% | |
| ACCAATGTCACCAATTGGGT+TGG | - | chr1.4:26539156-26539175 | MS.gene71327:CDS | 45.0% | |
| ACCACCTGAGTGTCATGAAA+TGG | - | chr1.4:26539772-26539791 | MS.gene71327:intron | 45.0% | |
| AGGGAGTCCCTTCACTAAAA+TGG | - | chr1.4:26540138-26540157 | MS.gene71327:intron | 45.0% | |
| AGTCCTCTTTCCCTAGGAAT+TGG | - | chr1.4:26540484-26540503 | MS.gene71327:intron | 45.0% | |
| ATGCCCAGTTACACATGTAG+AGG | - | chr1.4:26541551-26541570 | MS.gene71327:intron | 45.0% | |
| CATAATATATGCAGGGTCCG+AGG | + | chr1.4:26541360-26541379 | None:intergenic | 45.0% | |
| CCAAATGGTACCAACCCAAT+TGG | + | chr1.4:26539169-26539188 | None:intergenic | 45.0% | |
| CTTATACCTCAATGTGGGAG+TGG | + | chr1.4:26540281-26540300 | None:intergenic | 45.0% | |
| GGTTATGCACTTCCAACTCT+TGG | - | chr1.4:26540052-26540071 | MS.gene71327:intron | 45.0% | |
| GTCTCCTCTACATGTGTAAC+TGG | + | chr1.4:26541558-26541577 | None:intergenic | 45.0% | |
| TACACTCTAGCAGTAGGAAC+AGG | - | chr1.4:26539854-26539873 | MS.gene71327:intron | 45.0% | |
| TACTAGAGTCCTCTTTCCCT+AGG | - | chr1.4:26540478-26540497 | MS.gene71327:intron | 45.0% | |
| TCCATTTCATGACACTCAGG+TGG | + | chr1.4:26539776-26539795 | None:intergenic | 45.0% | |
| TTCCTATGCCCATCCTTTGA+AGG | + | chr1.4:26541830-26541849 | None:intergenic | 45.0% | |
| TTGATTCCACTCCCACATTG+AGG | - | chr1.4:26540272-26540291 | MS.gene71327:intron | 45.0% | |
| ! | ACCAACCCAATTGGTGACAT+TGG | + | chr1.4:26539160-26539179 | None:intergenic | 45.0% |
| ! | CATGACACTCAGGTGGTTTT+AGG | + | chr1.4:26539769-26539788 | None:intergenic | 45.0% |
| ! | GCACCAATGGTGGAAATGTT+AGG | + | chr1.4:26539890-26539909 | None:intergenic | 45.0% |
| ! | TCTTGACACATGCCTTGTTG+AGG | + | chr1.4:26541503-26541522 | None:intergenic | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+GGG | + | chr1.4:26541389-26541408 | None:intergenic | 45.0% |
| !! | AAGTTGCGGTTTGGTTTGGT+TGG | + | chr1.4:26540680-26540699 | None:intergenic | 45.0% |
| !! | CCAATTGGGTTGGTACCATT+TGG | - | chr1.4:26539166-26539185 | MS.gene71327:CDS | 45.0% |
| !! | GATAATGTGGGTTGGACTCT+TGG | - | chr1.4:26540031-26540050 | MS.gene71327:intron | 45.0% |
| !! | GCAACTTGGATTGGTTCGTA+TGG | + | chr1.4:26541071-26541090 | None:intergenic | 45.0% |
| !! | TTAATTAAGTAAAAATATAT+AGG | - | chr1.4:26539311-26539330 | MS.gene71327:CDS | 5.0% |
| ACTCTAGCAGTAGGAACAGG+TGG | - | chr1.4:26539857-26539876 | MS.gene71327:intron | 50.0% | |
| AGACATGCCCTGCCAATTTG+AGG | + | chr1.4:26539717-26539736 | None:intergenic | 50.0% | |
| CAAAGGTCCAATAACGGCCA+AGG | + | chr1.4:26539230-26539249 | None:intergenic | 50.0% | |
| CCTCCAATTCCTAGGGAAAG+AGG | + | chr1.4:26540490-26540509 | None:intergenic | 50.0% | |
| CCTCTTTCCCTAGGAATTGG+AGG | - | chr1.4:26540487-26540506 | MS.gene71327:intron | 50.0% | |
| CTCCTTCAAAGGATGGGCAT+AGG | - | chr1.4:26541825-26541844 | MS.gene71327:CDS | 50.0% | |
| GCACTCTACACTCTAGCAGT+AGG | - | chr1.4:26539848-26539867 | MS.gene71327:intron | 50.0% | |
| GTGAGCTTAGCTCAGTTGGT+AGG | + | chr1.4:26541390-26541409 | None:intergenic | 50.0% | |
| TATGTTGCTGACGCCTACCT+TGG | - | chr1.4:26539210-26539229 | MS.gene71327:CDS | 50.0% | |
| TTAGTGAAGGGACTCCCTGT+AGG | + | chr1.4:26540136-26540155 | None:intergenic | 50.0% | |
| ! | TGCATTCAGTAGGGTGTTCG+CGG | + | chr1.4:26541200-26541219 | None:intergenic | 50.0% |
| !! | TTGGATTGGTTCGTATGGCG+CGG | + | chr1.4:26541066-26541085 | None:intergenic | 50.0% |
| !!! | CACTCAGGTGGTTTTAGGCT+TGG | + | chr1.4:26539764-26539783 | None:intergenic | 50.0% |
| ACGCCTACCTTGGCCGTTAT+TGG | - | chr1.4:26539220-26539239 | MS.gene71327:CDS | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr1.4:26541391-26541410 | MS.gene71327:intron | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr1.4:26541394-26541413 | None:intergenic | 55.0% | |
| CTGAGCTAAGCTCACGAGGA+CGG | - | chr1.4:26541395-26541414 | MS.gene71327:intron | 55.0% | |
| GGTCCAATAACGGCCAAGGT+AGG | + | chr1.4:26539226-26539245 | None:intergenic | 55.0% | |
| GGTGGTCGAGGTTTGAACCT+CGG | - | chr1.4:26541340-26541359 | MS.gene71327:intron | 55.0% | |
| ! | TCAGTAGGGTGTTCGCGGTG+CGG | + | chr1.4:26541195-26541214 | None:intergenic | 60.0% |
| !! | GTTCGCGGTGCGGTTTGGTT+CGG | + | chr1.4:26541185-26541204 | None:intergenic | 60.0% |
| ! | AGGGTGTTCGCGGTGCGGTT+TGG | + | chr1.4:26541190-26541209 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 26539058 | 26541906 | 26539058 | ID=MS.gene71327 |
| chr1.4 | mRNA | 26539058 | 26541906 | 26539058 | ID=MS.gene71327.t1;Parent=MS.gene71327 |
| chr1.4 | exon | 26541689 | 26541906 | 26541689 | ID=MS.gene71327.t1.exon1;Parent=MS.gene71327.t1 |
| chr1.4 | CDS | 26541689 | 26541906 | 26541689 | ID=cds.MS.gene71327.t1;Parent=MS.gene71327.t1 |
| chr1.4 | exon | 26540671 | 26541236 | 26540671 | ID=MS.gene71327.t1.exon2;Parent=MS.gene71327.t1 |
| chr1.4 | CDS | 26540671 | 26541236 | 26540671 | ID=cds.MS.gene71327.t1;Parent=MS.gene71327.t1 |
| chr1.4 | exon | 26539058 | 26539467 | 26539058 | ID=MS.gene71327.t1.exon3;Parent=MS.gene71327.t1 |
| chr1.4 | CDS | 26539058 | 26539467 | 26539058 | ID=cds.MS.gene71327.t1;Parent=MS.gene71327.t1 |
| Gene Sequence |
| Protein sequence |
