Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71417.t1 | XP_003590834.1 | 92.6 | 202 | 14 | 1 | 1 | 201 | 1 | 202 | 9.30E-103 | 382.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71417.t1 | O22797 | 72.8 | 202 | 54 | 1 | 1 | 201 | 1 | 202 | 3.7e-84 | 312.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71417.t1 | B7FNC0 | 92.6 | 202 | 14 | 1 | 1 | 201 | 1 | 202 | 6.7e-103 | 382.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054236 | MS.gene71417 | 0.807332 | 5.32E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene71417 | 0.800011 | 1.76E-48 | -1.69E-46 |
| MS.gene059439 | MS.gene71417 | 0.802807 | 4.71E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71417.t1 | MTR_1g075710 | 92.574 | 202 | 14 | 1 | 1 | 201 | 1 | 202 | 6.08e-140 | 389 |
| MS.gene71417.t1 | MTR_1g041495 | 78.713 | 202 | 42 | 1 | 1 | 201 | 1 | 202 | 2.62e-119 | 337 |
| MS.gene71417.t1 | MTR_1g041495 | 75.355 | 211 | 42 | 2 | 1 | 201 | 1 | 211 | 4.52e-116 | 329 |
| MS.gene71417.t1 | MTR_1g075700 | 92.638 | 163 | 8 | 1 | 1 | 163 | 1 | 159 | 2.24e-111 | 316 |
| MS.gene71417.t1 | MTR_1g028960 | 34.392 | 189 | 118 | 1 | 19 | 201 | 35 | 223 | 1.87e-38 | 132 |
| MS.gene71417.t1 | MTR_1g028970 | 34.158 | 202 | 123 | 2 | 5 | 201 | 27 | 223 | 7.05e-38 | 130 |
| MS.gene71417.t1 | MTR_3g090530 | 36.364 | 187 | 113 | 2 | 21 | 201 | 36 | 222 | 1.28e-36 | 127 |
| MS.gene71417.t1 | MTR_1g028970 | 33.333 | 192 | 118 | 2 | 5 | 191 | 27 | 213 | 3.36e-34 | 121 |
| MS.gene71417.t1 | MTR_3g090530 | 35.912 | 181 | 110 | 2 | 21 | 195 | 36 | 216 | 1.65e-33 | 119 |
| MS.gene71417.t1 | MTR_1g028970 | 34.815 | 135 | 88 | 0 | 19 | 153 | 36 | 170 | 3.41e-26 | 99.8 |
| MS.gene71417.t1 | MTR_3g090530 | 37.209 | 129 | 80 | 1 | 21 | 148 | 36 | 164 | 5.05e-25 | 96.3 |
| MS.gene71417.t1 | MTR_3g090530 | 34.437 | 151 | 93 | 2 | 57 | 201 | 7 | 157 | 4.53e-24 | 93.2 |
| MS.gene71417.t1 | MTR_3g090530 | 33.793 | 145 | 90 | 2 | 57 | 195 | 7 | 151 | 5.76e-21 | 85.1 |
| MS.gene71417.t1 | MTR_3g090530 | 34.409 | 93 | 60 | 1 | 57 | 148 | 7 | 99 | 3.51e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71417.t1 | AT2G33470 | 72.772 | 202 | 54 | 1 | 1 | 201 | 1 | 202 | 1.62e-111 | 317 |
| MS.gene71417.t1 | AT2G33470 | 72.772 | 202 | 54 | 1 | 1 | 201 | 1 | 202 | 1.62e-111 | 317 |
| MS.gene71417.t1 | AT1G21360 | 34.392 | 189 | 119 | 1 | 17 | 200 | 34 | 222 | 2.66e-35 | 124 |
| MS.gene71417.t1 | AT3G21260 | 35.915 | 142 | 91 | 0 | 26 | 167 | 53 | 194 | 1.01e-32 | 117 |
| MS.gene71417.t1 | AT1G21360 | 34.375 | 160 | 100 | 1 | 46 | 200 | 1 | 160 | 2.51e-28 | 104 |
| MS.gene71417.t1 | AT1G21360 | 35.606 | 132 | 85 | 0 | 17 | 148 | 34 | 165 | 1.21e-23 | 93.6 |
| MS.gene71417.t1 | AT3G21260 | 34.862 | 109 | 71 | 0 | 59 | 167 | 2 | 110 | 6.80e-22 | 87.4 |
| MS.gene71417.t1 | AT3G21260 | 34.314 | 102 | 67 | 0 | 66 | 167 | 4 | 105 | 3.90e-20 | 82.8 |
Find 48 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGTGAATCACAAGTTTC+TGG | 0.195486 | 1.3:-54240051 | MS.gene71417:intron |
| AATTCTGTCACAGCCTTTCT+TGG | 0.198191 | 1.3:-54242468 | MS.gene71417:CDS |
| GGCTGGATTAGATAAATATT+TGG | 0.212658 | 1.3:+54241028 | None:intergenic |
| ACTATACAGGCAGTTGAATT+TGG | 0.222456 | 1.3:+54241007 | None:intergenic |
| AAGCATTTACTTCCTGTTAT+AGG | 0.239572 | 1.3:-54242437 | MS.gene71417:intron |
| CTTCAGAGCGATGGATTTCT+TGG | 0.257299 | 1.3:-54240383 | MS.gene71417:intron |
| CTTCTTTAGAGTCTTGTAAT+AGG | 0.289437 | 1.3:+54240297 | None:intergenic |
| ATTCTTATGGCAGATAAGTT+TGG | 0.303743 | 1.3:-54241661 | MS.gene71417:intron |
| TCCATGAATTTCTTCCTATC+AGG | 0.324564 | 1.3:+54240140 | None:intergenic |
| GAAACTTGTGATTCACTTCA+AGG | 0.364877 | 1.3:+54240054 | None:intergenic |
| GAAATTCATGGAGGTGATAC+AGG | 0.367713 | 1.3:-54240129 | MS.gene71417:CDS |
| ATTCAACTGCCTGTATAGTT+TGG | 0.375332 | 1.3:-54241003 | MS.gene71417:CDS |
| GAAGCATGTAAAGTCTGAAC+AGG | 0.384113 | 1.3:-54242495 | MS.gene71417:CDS |
| CTGCATGCTCAATTAAGTTT+CGG | 0.387145 | 1.3:+54240350 | None:intergenic |
| CTCTAAAGAAGTGGCATGGC+TGG | 0.390523 | 1.3:-54240285 | MS.gene71417:CDS |
| ATTTGGATTGGATGAATTGA+AGG | 0.405788 | 1.3:-54239603 | MS.gene71417:CDS |
| ATAGAGCAATTACCTATAAC+AGG | 0.408205 | 1.3:+54242425 | None:intergenic |
| ATGAATTGAAGGCTTCATAA+AGG | 0.410184 | 1.3:-54239592 | None:intergenic |
| TACAGGCAGTTGAATTTGGC+TGG | 0.415266 | 1.3:+54241011 | None:intergenic |
| GAGAAGTCCGATGGTACAAC+TGG | 0.442573 | 1.3:+54240941 | None:intergenic |
| GTTGTACCATCGGACTTCTC+TGG | 0.447358 | 1.3:-54240938 | MS.gene71417:CDS |
| AGATAAGTTTGGAGCTGCTA+TGG | 0.456403 | 1.3:-54241650 | MS.gene71417:CDS |
| GACACAGGCTCGATTTGGAT+TGG | 0.469496 | 1.3:-54239615 | MS.gene71417:intron |
| CGATGAAGCTTGCTCCTGAT+AGG | 0.478723 | 1.3:-54240154 | MS.gene71417:CDS |
| CTACTTGTACCAAACTATAC+AGG | 0.482133 | 1.3:+54240994 | None:intergenic |
| CAGAGCGATGGATTTCTTGG+TGG | 0.505702 | 1.3:-54240380 | MS.gene71417:CDS |
| ACTTAATTGAGCATGCAGAT+TGG | 0.516105 | 1.3:-54240345 | MS.gene71417:CDS |
| TGCTTCATTCCTTCCAATGT+CGG | 0.521545 | 1.3:+54242512 | None:intergenic |
| TCGGACTTCTCTGGCTTACA+AGG | 0.522142 | 1.3:-54240929 | MS.gene71417:intron |
| TCCTGATAGGAAGAAATTCA+TGG | 0.526707 | 1.3:-54240141 | MS.gene71417:CDS |
| TGCTTGCACACATCCAAGAA+AGG | 0.532992 | 1.3:+54242455 | None:intergenic |
| TTGTGATTCACTTCAAGGAA+AGG | 0.544570 | 1.3:+54240059 | None:intergenic |
| ATGTAAAATCTTCAGAGCGA+TGG | 0.545842 | 1.3:-54240392 | MS.gene71417:intron |
| CACCTATGTCAGATTTGACA+AGG | 0.559862 | 1.3:+54241626 | None:intergenic |
| CTTGTAATAGGAATCAGTAC+AGG | 0.564286 | 1.3:+54240309 | None:intergenic |
| GGTACAACTGGATGATGCCT+TGG | 0.569718 | 1.3:+54240953 | None:intergenic |
| ATTACAAGACTCTAAAGAAG+TGG | 0.571516 | 1.3:-54240294 | MS.gene71417:CDS |
| GCATCATCCAGTTGTACCAT+CGG | 0.593543 | 1.3:-54240948 | MS.gene71417:CDS |
| AGTTGAAACTAAAACTGCCA+AGG | 0.615757 | 1.3:-54240970 | MS.gene71417:CDS |
| GCCCTTGTCAAATCTGACAT+AGG | 0.639784 | 1.3:-54241628 | MS.gene71417:CDS |
| AAATTCATGGAGGTGATACA+GGG | 0.651168 | 1.3:-54240128 | MS.gene71417:CDS |
| CTTGTCAAATCTGACATAGG+TGG | 0.654096 | 1.3:-54241625 | MS.gene71417:CDS |
| AAGACTCTAAAGAAGTGGCA+TGG | 0.657932 | 1.3:-54240289 | MS.gene71417:CDS |
| AAGCATGTAAAGTCTGAACA+GGG | 0.682496 | 1.3:-54242494 | MS.gene71417:CDS |
| ACCTATGTCAGATTTGACAA+GGG | 0.691107 | 1.3:+54241627 | None:intergenic |
| TGTAAGCCAGAGAAGTCCGA+TGG | 0.693508 | 1.3:+54240932 | None:intergenic |
| TTCATGGAGGTGATACAGGG+TGG | 0.720698 | 1.3:-54240125 | MS.gene71417:CDS |
| TGATAGGAAGAAATTCATGG+AGG | 0.764708 | 1.3:-54240138 | MS.gene71417:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGTAAAACATATATATA+CGG | + | chr1.3:54240578-54240597 | None:intergenic | 10.0% |
| !! | AAAATATATATCTCTAAATA+TGG | + | chr1.3:54242385-54242404 | None:intergenic | 10.0% |
| !! | AATACTAACAAATTATATAA+AGG | + | chr1.3:54241687-54241706 | None:intergenic | 10.0% |
| !!! | TAAAGATATTTATTTCTTAA+AGG | - | chr1.3:54242462-54242481 | MS.gene71417:CDS | 10.0% |
| !! | AAAGTAAAACATATATATAC+GGG | + | chr1.3:54240577-54240596 | None:intergenic | 15.0% |
| !! | AGAAATAAATATCTTTATCA+TGG | + | chr1.3:54242459-54242478 | None:intergenic | 15.0% |
| !! | CATGTTTATATGTATAAATT+TGG | - | chr1.3:54240057-54240076 | MS.gene71417:CDS | 15.0% |
| !! | TCATATGACATATATATAAA+AGG | + | chr1.3:54240780-54240799 | None:intergenic | 15.0% |
| !!! | ACCAAACTTATATTTTTTAT+CGG | - | chr1.3:54240987-54241006 | MS.gene71417:CDS | 15.0% |
| !!! | ATATATGTTTTACTTTTAGA+GGG | - | chr1.3:54240581-54240600 | MS.gene71417:intron | 15.0% |
| !!! | ATTTATTTCTTAAAGGATAT+TGG | - | chr1.3:54242469-54242488 | MS.gene71417:CDS | 15.0% |
| !!! | TATATATGTTTTACTTTTAG+AGG | - | chr1.3:54240580-54240599 | MS.gene71417:intron | 15.0% |
| !!! | TTTCGAAATCAATTTTTTTA+AGG | - | chr1.3:54240203-54240222 | MS.gene71417:intron | 15.0% |
| !! | AATATTTCATTAAGAGGAAA+AGG | - | chr1.3:54240227-54240246 | MS.gene71417:intron | 20.0% |
| !! | GAAAAAAACTTAAACTGTAT+TGG | - | chr1.3:54241009-54241028 | MS.gene71417:CDS | 20.0% |
| !! | GGAATATTAGGTTAAATTTA+TGG | + | chr1.3:54239873-54239892 | None:intergenic | 20.0% |
| !! | TAAGGAAATATTTCATTAAG+AGG | - | chr1.3:54240221-54240240 | MS.gene71417:intron | 20.0% |
| !! | TATGCATTTGATTATTCAAA+CGG | + | chr1.3:54239831-54239850 | None:intergenic | 20.0% |
| !! | TCCGATAAAAAATATAAGTT+TGG | + | chr1.3:54240991-54241010 | None:intergenic | 20.0% |
| !! | TGATACAAGTAATCATATTA+TGG | + | chr1.3:54240427-54240446 | None:intergenic | 20.0% |
| !!! | ACTACATTTTATACAACTAT+TGG | - | chr1.3:54240952-54240971 | MS.gene71417:CDS | 20.0% |
| !!! | TATATGTTTTACTTTTAGAG+GGG | - | chr1.3:54240582-54240601 | MS.gene71417:intron | 20.0% |
| !!! | TTGAATTGATTTGGAATATT+AGG | + | chr1.3:54239885-54239904 | None:intergenic | 20.0% |
| !!! | TTTTTCTTCAATTTATCTTG+AGG | - | chr1.3:54241582-54241601 | MS.gene71417:intron | 20.0% |
| ! | ATACTAGCATGTTTAATGTA+AGG | - | chr1.3:54240014-54240033 | MS.gene71417:intron | 25.0% |
| ! | ATGCATTTGATTATTCAAAC+GGG | + | chr1.3:54239830-54239849 | None:intergenic | 25.0% |
| ! | GAAAAACACAAGATAAAAAC+AGG | + | chr1.3:54240552-54240571 | None:intergenic | 25.0% |
| ! | TAAGTTAAGCAGTAATTGTT+TGG | + | chr1.3:54241234-54241253 | None:intergenic | 25.0% |
| ! | TAGTATAGAGTAAGAATATG+TGG | + | chr1.3:54241052-54241071 | None:intergenic | 25.0% |
| ! | TTAAAATGCAACATGATACT+TGG | - | chr1.3:54241358-54241377 | MS.gene71417:intron | 25.0% |
| ! | TTGCAACAATAACAAATCAA+AGG | + | chr1.3:54239731-54239750 | None:intergenic | 25.0% |
| ! | TTTATTATCTTTCAGCTCAA+TGG | - | chr1.3:54241522-54241541 | MS.gene71417:intron | 25.0% |
| !! | TTGGTTCTTTAATTATACTG+TGG | - | chr1.3:54240076-54240095 | MS.gene71417:CDS | 25.0% |
| !! | TTTTCAAATTCCTGTTTAGT+TGG | - | chr1.3:54240905-54240924 | MS.gene71417:intron | 25.0% |
| !!! | TGATGTGTTTTATTTTGTGA+GGG | - | chr1.3:54239791-54239810 | MS.gene71417:intron | 25.0% |
| !!! | TTACTAATTTTGTTTTCTCG+TGG | - | chr1.3:54241631-54241650 | MS.gene71417:CDS | 25.0% |
| !!! | TTGATGTGTTTTATTTTGTG+AGG | - | chr1.3:54239790-54239809 | MS.gene71417:intron | 25.0% |
| AACTTAAATAACCAAGAAGC+AGG | + | chr1.3:54240185-54240204 | None:intergenic | 30.0% | |
| AAGCATTTACTTCCTGTTAT+AGG | - | chr1.3:54239691-54239710 | MS.gene71417:intron | 30.0% | |
| ACTTATAATTCCTACTGGTA+TGG | - | chr1.3:54241249-54241268 | MS.gene71417:intron | 30.0% | |
| ATAGAGCAATTACCTATAAC+AGG | + | chr1.3:54239706-54239725 | None:intergenic | 30.0% | |
| ATAGTATAGCCATATAACCA+TGG | + | chr1.3:54240854-54240873 | None:intergenic | 30.0% | |
| ATGAGTGTTCATGTAGTATA+TGG | - | chr1.3:54241911-54241930 | MS.gene71417:intron | 30.0% | |
| ATTCTTATGGCAGATAAGTT+TGG | - | chr1.3:54240467-54240486 | MS.gene71417:intron | 30.0% | |
| ATTGCTGACATTAATCTACA+TGG | - | chr1.3:54242139-54242158 | MS.gene71417:intron | 30.0% | |
| CAAATCAATTCAAGTCTATG+CGG | - | chr1.3:54239892-54239911 | MS.gene71417:intron | 30.0% | |
| GAAAAGGAATAGAAAACAAG+AGG | - | chr1.3:54240243-54240262 | MS.gene71417:intron | 30.0% | |
| GCTTAACTTATAATTCCTAC+TGG | - | chr1.3:54241244-54241263 | MS.gene71417:intron | 30.0% | |
| GGTTAAAAACAGTCTACAAA+AGG | + | chr1.3:54240164-54240183 | None:intergenic | 30.0% | |
| TATACCTTGAAGTGTAAACT+GGG | - | chr1.3:54240871-54240890 | MS.gene71417:intron | 30.0% | |
| TATATATAAAAGGACCAACC+CGG | + | chr1.3:54240770-54240789 | None:intergenic | 30.0% | |
| TCATGTAGTATATGGTAACA+TGG | - | chr1.3:54241919-54241938 | MS.gene71417:intron | 30.0% | |
| TTGTGTTACAATTTGATGCT+TGG | - | chr1.3:54240384-54240403 | MS.gene71417:intron | 30.0% | |
| ! | AAACAAATAAGCATTTGCTG+AGG | + | chr1.3:54241664-54241683 | None:intergenic | 30.0% |
| ! | ATGATAATGCATAGAGTTTC+AGG | + | chr1.3:54242349-54242368 | None:intergenic | 30.0% |
| ! | ATTACAAGACTCTAAAGAAG+TGG | - | chr1.3:54241834-54241853 | MS.gene71417:intron | 30.0% |
| ! | ATTTGGATTGGATGAATTGA+AGG | - | chr1.3:54242525-54242544 | MS.gene71417:CDS | 30.0% |
| ! | GGCTGGATTAGATAAATATT+TGG | + | chr1.3:54241103-54241122 | None:intergenic | 30.0% |
| ! | TGATAATGCATAGAGTTTCA+GGG | + | chr1.3:54242348-54242367 | None:intergenic | 30.0% |
| !! | CTTCTTTAGAGTCTTGTAAT+AGG | + | chr1.3:54241834-54241853 | None:intergenic | 30.0% |
| !! | TGCATGTTTTTGATAGAGAT+GGG | + | chr1.3:54240277-54240296 | None:intergenic | 30.0% |
| !!! | AAAGTTTGTTGTTTTGACAC+AGG | - | chr1.3:54242498-54242517 | MS.gene71417:CDS | 30.0% |
| !!! | CTAATTGAGTCACTTTTTCA+AGG | - | chr1.3:54241475-54241494 | MS.gene71417:intron | 30.0% |
| !!! | GATGTGTTTTATTTTGTGAG+GGG | - | chr1.3:54239792-54239811 | MS.gene71417:intron | 30.0% |
| AAAAGGTTCACATACTGCTA+AGG | + | chr1.3:54240147-54240166 | None:intergenic | 35.0% | |
| AAAGGTTCACATACTGCTAA+GGG | + | chr1.3:54240146-54240165 | None:intergenic | 35.0% | |
| AAATTCATGGAGGTGATACA+GGG | - | chr1.3:54242000-54242019 | MS.gene71417:intron | 35.0% | |
| AACCATGGTATGTCATCTTA+AGG | + | chr1.3:54240839-54240858 | None:intergenic | 35.0% | |
| AAGCATGTAAAGTCTGAACA+GGG | - | chr1.3:54239634-54239653 | MS.gene71417:intron | 35.0% | |
| AAGGAGTAAGGTAAAGAACT+AGG | + | chr1.3:54239983-54240002 | None:intergenic | 35.0% | |
| ACCTATGTCAGATTTGACAA+GGG | + | chr1.3:54240504-54240523 | None:intergenic | 35.0% | |
| ACTATACAGGCAGTTGAATT+TGG | + | chr1.3:54241124-54241143 | None:intergenic | 35.0% | |
| ACTTAATTGAGCATGCAGAT+TGG | - | chr1.3:54241783-54241802 | MS.gene71417:intron | 35.0% | |
| AGCCTCTTGTGTAAAAAACA+GGG | - | chr1.3:54240673-54240692 | MS.gene71417:intron | 35.0% | |
| AGTTGAAACTAAAACTGCCA+AGG | - | chr1.3:54241158-54241177 | MS.gene71417:intron | 35.0% | |
| ATACTGCTAAGGGGTAAAAA+GGG | + | chr1.3:54240136-54240155 | None:intergenic | 35.0% | |
| ATGTAAAATCTTCAGAGCGA+TGG | - | chr1.3:54241736-54241755 | MS.gene71417:intron | 35.0% | |
| ATTATCTTTCAGCTCAATGG+TGG | - | chr1.3:54241525-54241544 | MS.gene71417:intron | 35.0% | |
| ATTCAACTGCCTGTATAGTT+TGG | - | chr1.3:54241125-54241144 | MS.gene71417:intron | 35.0% | |
| CATGACACATTAACTGATCT+TGG | + | chr1.3:54242302-54242321 | None:intergenic | 35.0% | |
| CATGCAAAACAAACTCTACT+TGG | + | chr1.3:54241325-54241344 | None:intergenic | 35.0% | |
| CGCATAGACTTGAATTGATT+TGG | + | chr1.3:54239894-54239913 | None:intergenic | 35.0% | |
| CTACTTGTACCAAACTATAC+AGG | + | chr1.3:54241137-54241156 | None:intergenic | 35.0% | |
| CTATACCTTGAAGTGTAAAC+TGG | - | chr1.3:54240870-54240889 | MS.gene71417:intron | 35.0% | |
| CTGCATGCTCAATTAAGTTT+CGG | + | chr1.3:54241781-54241800 | None:intergenic | 35.0% | |
| CTTGTAATAGGAATCAGTAC+AGG | + | chr1.3:54241822-54241841 | None:intergenic | 35.0% | |
| CTTGTGTAAAAAACAGGGTA+AGG | - | chr1.3:54240678-54240697 | MS.gene71417:intron | 35.0% | |
| GAAACTTGTGATTCACTTCA+AGG | + | chr1.3:54242077-54242096 | None:intergenic | 35.0% | |
| GATGACATACCATGGTTATA+TGG | - | chr1.3:54240842-54240861 | MS.gene71417:intron | 35.0% | |
| GCTAGTATGTGTCGAATATA+AGG | + | chr1.3:54240002-54240021 | None:intergenic | 35.0% | |
| GTAAGAATGTTTACTATGCG+TGG | - | chr1.3:54241427-54241446 | MS.gene71417:intron | 35.0% | |
| TAAACATGACGTGCAATCAT+CGG | + | chr1.3:54240045-54240064 | None:intergenic | 35.0% | |
| TAGGCTCAATAAAGATACAG+TGG | + | chr1.3:54239964-54239983 | None:intergenic | 35.0% | |
| TATATGCAAGCCAACTAAAC+AGG | + | chr1.3:54240918-54240937 | None:intergenic | 35.0% | |
| TATCTTGAGGTTATGAAGCT+CGG | - | chr1.3:54241595-54241614 | MS.gene71417:intron | 35.0% | |
| TATTTGGATTCCAATCTCTG+CGG | + | chr1.3:54241087-54241106 | None:intergenic | 35.0% | |
| TCCATGAATTTCTTCCTATC+AGG | + | chr1.3:54241991-54242010 | None:intergenic | 35.0% | |
| TCCTGATAGGAAGAAATTCA+TGG | - | chr1.3:54241987-54242006 | MS.gene71417:intron | 35.0% | |
| TGAAGTGAATCACAAGTTTC+TGG | - | chr1.3:54242077-54242096 | MS.gene71417:intron | 35.0% | |
| TGATAGGAAGAAATTCATGG+AGG | - | chr1.3:54241990-54242009 | MS.gene71417:intron | 35.0% | |
| TGTGTCGAATATAAGGAGTA+AGG | + | chr1.3:54239995-54240014 | None:intergenic | 35.0% | |
| TTCCTTAAGATGACATACCA+TGG | - | chr1.3:54240834-54240853 | MS.gene71417:intron | 35.0% | |
| TTGTGATTCACTTCAAGGAA+AGG | + | chr1.3:54242072-54242091 | None:intergenic | 35.0% | |
| ! | ATAGTGGCTATTTAGGTTAC+AGG | + | chr1.3:54239926-54239945 | None:intergenic | 35.0% |
| ! | CATATGTAATCTGATTCGAC+TGG | + | chr1.3:54242230-54242249 | None:intergenic | 35.0% |
| ! | TGTATCATTGTTGACTGAAC+TGG | - | chr1.3:54240440-54240459 | MS.gene71417:intron | 35.0% |
| !! | CTGAACTGGTGTTATTCTTA+TGG | - | chr1.3:54240454-54240473 | MS.gene71417:intron | 35.0% |
| !! | GTGCATGTTTTTGATAGAGA+TGG | + | chr1.3:54240278-54240297 | None:intergenic | 35.0% |
| !! | TTTGTTATTGTTGCAAGACG+AGG | - | chr1.3:54239735-54239754 | MS.gene71417:intron | 35.0% |
| !!! | ACTGTTTTTAACCTGCTTCT+TGG | - | chr1.3:54240171-54240190 | MS.gene71417:intron | 35.0% |
| !!! | CACTTTTTCAAGGTGTGTTA+GGG | - | chr1.3:54241485-54241504 | MS.gene71417:intron | 35.0% |
| !!! | TACCCTGTTTTTTACACAAG+AGG | + | chr1.3:54240678-54240697 | None:intergenic | 35.0% |
| !!! | TCACTTTTTCAAGGTGTGTT+AGG | - | chr1.3:54241484-54241503 | MS.gene71417:intron | 35.0% |
| !!! | TCCTTGCGTTTTGAAAACAA+GGG | - | chr1.3:54242183-54242202 | MS.gene71417:intron | 35.0% |
| !!! | TTCCTTGCGTTTTGAAAACA+AGG | - | chr1.3:54242182-54242201 | MS.gene71417:intron | 35.0% |
| AAGGTTCACATACTGCTAAG+GGG | + | chr1.3:54240145-54240164 | None:intergenic | 40.0% | |
| AATTCTGTCACAGCCTTTCT+TGG | - | chr1.3:54239660-54239679 | MS.gene71417:intron | 40.0% | |
| ATCTACATGGCCTGAAAACA+AGG | - | chr1.3:54242152-54242171 | MS.gene71417:intron | 40.0% | |
| ATTAACTGATCTTGGCAGTC+TGG | + | chr1.3:54242294-54242313 | None:intergenic | 40.0% | |
| CACCTATGTCAGATTTGACA+AGG | + | chr1.3:54240505-54240524 | None:intergenic | 40.0% | |
| CAGCCTCTTGTGTAAAAAAC+AGG | - | chr1.3:54240672-54240691 | MS.gene71417:intron | 40.0% | |
| CATACTGCTAAGGGGTAAAA+AGG | + | chr1.3:54240137-54240156 | None:intergenic | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr1.3:54240704-54240723 | MS.gene71417:intron | 40.0% | |
| CTTGTCAAATCTGACATAGG+TGG | - | chr1.3:54240503-54240522 | MS.gene71417:intron | 40.0% | |
| GAAATTCATGGAGGTGATAC+AGG | - | chr1.3:54241999-54242018 | MS.gene71417:intron | 40.0% | |
| GAAGCATGTAAAGTCTGAAC+AGG | - | chr1.3:54239633-54239652 | MS.gene71417:intron | 40.0% | |
| GTTGTTGTCATGTGACTGTA+AGG | - | chr1.3:54240627-54240646 | MS.gene71417:intron | 40.0% | |
| TACACCCAGTTTACACTTCA+AGG | + | chr1.3:54240878-54240897 | None:intergenic | 40.0% | |
| TAGTTCAAGCGTCACTGTAA+GGG | - | chr1.3:54241871-54241890 | MS.gene71417:intron | 40.0% | |
| TCTACATGGCCTGAAAACAA+GGG | - | chr1.3:54242153-54242172 | MS.gene71417:intron | 40.0% | |
| TCTGTGAGCAATGTTCATCT+TGG | - | chr1.3:54242260-54242279 | MS.gene71417:intron | 40.0% | |
| TGCATAGAGTTTCAGGGATT+TGG | + | chr1.3:54242342-54242361 | None:intergenic | 40.0% | |
| TGCTTCATTCCTTCCAATGT+CGG | + | chr1.3:54239619-54239638 | None:intergenic | 40.0% | |
| TGTGTCATGCATTTACTGCA+TGG | - | chr1.3:54242313-54242332 | MS.gene71417:intron | 40.0% | |
| ! | AAGACTCTAAAGAAGTGGCA+TGG | - | chr1.3:54241839-54241858 | MS.gene71417:intron | 40.0% |
| ! | AGATAAGTTTGGAGCTGCTA+TGG | - | chr1.3:54240478-54240497 | MS.gene71417:intron | 40.0% |
| ! | GTCTTTTAAGCTGCAGATAG+TGG | + | chr1.3:54239942-54239961 | None:intergenic | 40.0% |
| ! | TTTGTGAGGGGAGTATAGAA+TGG | - | chr1.3:54239804-54239823 | MS.gene71417:intron | 40.0% |
| !! | TACTTTTAGAGGGGTAACCT+TGG | - | chr1.3:54240591-54240610 | MS.gene71417:intron | 40.0% |
| !!! | GAATCCAATCCCTTGTTTTC+AGG | + | chr1.3:54242165-54242184 | None:intergenic | 40.0% |
| !!! | TCCCTTGTTTTCAAAACGCA+AGG | + | chr1.3:54242187-54242206 | None:intergenic | 40.0% |
| !!! | TTTTGTTTTCTCGTGGTCAG+AGG | - | chr1.3:54241638-54241657 | MS.gene71417:CDS | 40.0% |
| ATGGCCTGAAAACAAGGGAT+TGG | - | chr1.3:54242158-54242177 | MS.gene71417:intron | 45.0% | |
| CAAGCTTCATCGCTATCTGT+AGG | + | chr1.3:54241966-54241985 | None:intergenic | 45.0% | |
| CTAGTTCAAGCGTCACTGTA+AGG | - | chr1.3:54241870-54241889 | MS.gene71417:intron | 45.0% | |
| GCATCATCCAGTTGTACCAT+CGG | - | chr1.3:54241180-54241199 | MS.gene71417:intron | 45.0% | |
| GCCCTTGTCAAATCTGACAT+AGG | - | chr1.3:54240500-54240519 | MS.gene71417:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr1.3:54240703-54240722 | MS.gene71417:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr1.3:54240700-54240719 | MS.gene71417:intron | 45.0% | |
| GTCATGTGACTGTAAGGTCA+CGG | - | chr1.3:54240633-54240652 | MS.gene71417:intron | 45.0% | |
| TACAGGCAGTTGAATTTGGC+TGG | + | chr1.3:54241120-54241139 | None:intergenic | 45.0% | |
| TCATGTGACTGTAAGGTCAC+GGG | - | chr1.3:54240634-54240653 | MS.gene71417:intron | 45.0% | |
| TGCTATCACTGTGTGTGTGT+GGG | + | chr1.3:54242433-54242452 | None:intergenic | 45.0% | |
| TGCTTGCACACATCCAAGAA+AGG | + | chr1.3:54239676-54239695 | None:intergenic | 45.0% | |
| TTCGAGAACACCATACCAGT+AGG | + | chr1.3:54241262-54241281 | None:intergenic | 45.0% | |
| TTGACTTTCACCGCAGAGAT+TGG | - | chr1.3:54241074-54241093 | MS.gene71417:intron | 45.0% | |
| ! | CTTCAGAGCGATGGATTTCT+TGG | - | chr1.3:54241745-54241764 | MS.gene71417:intron | 45.0% |
| ! | GCTGCAGATAGTGGCTATTT+AGG | + | chr1.3:54239933-54239952 | None:intergenic | 45.0% |
| ! | GTTTTTGCTCCGACATTGGA+AGG | - | chr1.3:54239607-54239626 | MS.gene71417:CDS | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr1.3:54240667-54240686 | None:intergenic | 45.0% |
| !! | GTTTTGACACAGGCTCGATT+TGG | - | chr1.3:54242508-54242527 | MS.gene71417:CDS | 45.0% |
| !!! | GACTGTTTTTGCTCCGACAT+TGG | - | chr1.3:54239603-54239622 | MS.gene71417:CDS | 45.0% |
| ATGACGTGCAATCATCGGAG+TGG | + | chr1.3:54240040-54240059 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr1.3:54240611-54240630 | None:intergenic | 50.0% | |
| CTGCTATCACTGTGTGTGTG+TGG | + | chr1.3:54242434-54242453 | None:intergenic | 50.0% | |
| GAGAAGTCCGATGGTACAAC+TGG | + | chr1.3:54241190-54241209 | None:intergenic | 50.0% | |
| GGTACAACTGGATGATGCCT+TGG | + | chr1.3:54241178-54241197 | None:intergenic | 50.0% | |
| GTTGTACCATCGGACTTCTC+TGG | - | chr1.3:54241190-54241209 | MS.gene71417:intron | 50.0% | |
| TGTAAGCCAGAGAAGTCCGA+TGG | + | chr1.3:54241199-54241218 | None:intergenic | 50.0% | |
| TTCATGGAGGTGATACAGGG+TGG | - | chr1.3:54242003-54242022 | MS.gene71417:intron | 50.0% | |
| ! | CAGAGCGATGGATTTCTTGG+TGG | - | chr1.3:54241748-54241767 | MS.gene71417:intron | 50.0% |
| ! | CGATGAAGCTTGCTCCTGAT+AGG | - | chr1.3:54241974-54241993 | MS.gene71417:intron | 50.0% |
| ! | CTCTAAAGAAGTGGCATGGC+TGG | - | chr1.3:54241843-54241862 | MS.gene71417:intron | 50.0% |
| ! | TCGGACTTCTCTGGCTTACA+AGG | - | chr1.3:54241199-54241218 | MS.gene71417:intron | 50.0% |
| !! | GACACAGGCTCGATTTGGAT+TGG | - | chr1.3:54242513-54242532 | MS.gene71417:CDS | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr1.3:54240646-54240665 | MS.gene71417:intron | 55.0% | |
| GTGTGTGTGTGGGTGTGTGT+TGG | + | chr1.3:54242423-54242442 | None:intergenic | 55.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr1.3:54240600-54240619 | MS.gene71417:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr1.3:54240716-54240735 | MS.gene71417:intron | 60.0% |
| ACCGAAGCTCCCGCATACGC+AGG | + | chr1.3:54240744-54240763 | None:intergenic | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | + | chr1.3:54240731-54240750 | None:intergenic | 65.0% | |
| CCCTGCGTATGCGGGAGCTT+CGG | - | chr1.3:54240740-54240759 | MS.gene71417:intron | 65.0% | |
| CCGAAGCTCCCGCATACGCA+GGG | + | chr1.3:54240743-54240762 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr1.3:54240718-54240737 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | chr1.3:54240731-54240750 | MS.gene71417:intron | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | chr1.3:54240732-54240751 | None:intergenic | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | chr1.3:54240732-54240751 | MS.gene71417:intron | 65.0% | |
| ! | ATGCGGGAGCTTCGGTGCAC+CGG | - | chr1.3:54240748-54240767 | MS.gene71417:intron | 65.0% |
| CGCATACGCAGGGTCCGGGA+AGG | + | chr1.3:54240733-54240752 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | + | chr1.3:54240737-54240756 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | chr1.3:54240738-54240757 | None:intergenic | 70.0% | |
| ! | GGAGCTTCGGTGCACCGGGT+TGG | - | chr1.3:54240753-54240772 | MS.gene71417:intron | 70.0% |
| ! | TGCGGGAGCTTCGGTGCACC+GGG | - | chr1.3:54240749-54240768 | MS.gene71417:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 54239595 | 54242555 | 54239595 | ID=MS.gene71417 |
| chr1.3 | mRNA | 54239595 | 54242555 | 54239595 | ID=MS.gene71417.t1;Parent=MS.gene71417 |
| chr1.3 | exon | 54242438 | 54242555 | 54242438 | ID=MS.gene71417.t1.exon1;Parent=MS.gene71417.t1 |
| chr1.3 | CDS | 54242438 | 54242555 | 54242438 | ID=cds.MS.gene71417.t1;Parent=MS.gene71417.t1 |
| chr1.3 | exon | 54241615 | 54241670 | 54241615 | ID=MS.gene71417.t1.exon2;Parent=MS.gene71417.t1 |
| chr1.3 | CDS | 54241615 | 54241670 | 54241615 | ID=cds.MS.gene71417.t1;Parent=MS.gene71417.t1 |
| chr1.3 | exon | 54240930 | 54241060 | 54240930 | ID=MS.gene71417.t1.exon3;Parent=MS.gene71417.t1 |
| chr1.3 | CDS | 54240930 | 54241060 | 54240930 | ID=cds.MS.gene71417.t1;Parent=MS.gene71417.t1 |
| chr1.3 | exon | 54240264 | 54240399 | 54240264 | ID=MS.gene71417.t1.exon4;Parent=MS.gene71417.t1 |
| chr1.3 | CDS | 54240264 | 54240399 | 54240264 | ID=cds.MS.gene71417.t1;Parent=MS.gene71417.t1 |
| chr1.3 | exon | 54240052 | 54240180 | 54240052 | ID=MS.gene71417.t1.exon5;Parent=MS.gene71417.t1 |
| chr1.3 | CDS | 54240052 | 54240180 | 54240052 | ID=cds.MS.gene71417.t1;Parent=MS.gene71417.t1 |
| chr1.3 | exon | 54239595 | 54239630 | 54239595 | ID=MS.gene71417.t1.exon6;Parent=MS.gene71417.t1 |
| chr1.3 | CDS | 54239595 | 54239630 | 54239595 | ID=cds.MS.gene71417.t1;Parent=MS.gene71417.t1 |
| Gene Sequence |
| Protein sequence |
