AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71579

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71579.t1 MTR_8g043650 92.405 237 18 0 1 237 1 237 5.42e-164 452
MS.gene71579.t1 MTR_1g105910 95.982 224 9 0 1 224 1 224 7.39e-162 447
MS.gene71579.t1 MTR_1g105920 90.868 219 20 0 1 219 1 219 3.94e-150 417
MS.gene71579.t1 MTR_2g030740 88.608 237 27 0 1 237 1 237 1.08e-148 414
MS.gene71579.t1 MTR_1g012570 89.451 237 25 0 1 237 1 237 1.26e-146 409
MS.gene71579.t1 MTR_3g052920 85.388 219 32 0 1 219 1 219 1.77e-141 395
MS.gene71579.t1 MTR_1g105905 85.000 220 33 0 18 237 1 220 7.16e-139 388
MS.gene71579.t1 MTR_3g052870 80.365 219 24 1 1 219 1 200 1.93e-124 352
MS.gene71579.t1 MTR_0121s0080 71.730 237 66 1 1 237 1 236 2.63e-121 345
MS.gene71579.t1 MTR_3g030770 72.650 234 46 3 1 224 1 226 3.64e-117 334
MS.gene71579.t1 MTR_1g108510 72.650 234 46 3 1 224 1 226 4.09e-116 331
MS.gene71579.t1 MTR_1g106070 86.264 182 25 0 1 182 1 182 1.14e-115 328
MS.gene71579.t1 MTR_5g055100 65.401 237 82 0 1 237 1 237 1.21e-114 328
MS.gene71579.t1 MTR_2g093190 72.222 234 47 3 1 224 1 226 1.30e-114 327
MS.gene71579.t1 MTR_1g077360 68.889 225 70 0 1 225 1 225 2.53e-114 327
MS.gene71579.t1 MTR_2g085280 65.254 236 82 0 1 236 1 236 7.61e-113 323
MS.gene71579.t1 MTR_1g075600 69.196 224 69 0 1 224 1 224 1.06e-112 323
MS.gene71579.t1 MTR_2g085250 65.254 236 82 0 1 236 1 236 1.95e-112 322
MS.gene71579.t1 MTR_1g108580 74.074 216 48 1 1 216 1 208 2.57e-111 319
MS.gene71579.t1 MTR_5g053390 67.857 224 72 0 1 224 1 224 2.41e-110 317
MS.gene71579.t1 MTR_5g045560 67.932 237 76 0 1 237 1 237 5.72e-110 316
MS.gene71579.t1 MTR_7g062350 65.471 223 75 2 16 237 27 248 4.04e-99 289
MS.gene71579.t1 MTR_1g075570 63.483 178 51 1 18 195 1 164 2.51e-70 213
MS.gene71579.t1 MTR_0121s0100 79.688 128 26 0 1 128 1 128 5.28e-69 208
MS.gene71579.t1 MTR_3g030780 75.194 129 32 0 1 129 1 129 2.13e-64 196
MS.gene71579.t1 MTR_3g080940 52.222 180 85 1 7 186 7 185 4.66e-64 198
MS.gene71579.t1 MTR_3g067910 67.647 102 33 0 21 122 2 103 1.36e-45 148
MS.gene71579.t1 MTR_2g105290 40.351 171 92 2 5 172 8 171 3.20e-41 139
MS.gene71579.t1 MTR_8g086290 42.169 166 86 2 5 167 8 166 6.37e-41 138
MS.gene71579.t1 MTR_7g028448 45.806 155 72 3 5 159 8 150 5.21e-36 125
MS.gene71579.t1 MTR_4g036915 45.806 155 72 3 5 159 8 150 5.21e-36 125
MS.gene71579.t1 MTR_4g127140 39.227 181 90 4 5 172 8 181 5.82e-32 115
MS.gene71579.t1 MTR_1g108500 58.407 113 24 2 8 118 94 185 5.16e-31 117
MS.gene71579.t1 MTR_3g067875 85.714 56 8 0 18 73 1 56 2.37e-28 102
MS.gene71579.t1 MTR_3g067870 71.429 63 18 0 16 78 83 145 2.62e-24 95.1
MS.gene71579.t1 MTR_3g067915 64.179 67 24 0 60 126 30 96 1.01e-23 91.7
MS.gene71579.t1 MTR_1g047550 60.870 69 27 0 9 77 2 70 1.81e-23 93.6
MS.gene71579.t1 MTR_8g079502 60.870 69 27 0 9 77 2 70 4.90e-23 92.4
MS.gene71579.t1 MTR_4g131030 40.517 116 54 3 9 109 2 117 1.68e-22 92.0
MS.gene71579.t1 MTR_8g051580 42.063 126 68 2 9 131 2 125 2.21e-22 90.5
MS.gene71579.t1 MTR_1g054265 45.545 101 53 1 9 109 2 100 2.75e-22 90.1
MS.gene71579.t1 MTR_1g063160 45.536 112 56 3 9 118 2 110 2.78e-22 90.5
MS.gene71579.t1 MTR_8g046350 40.171 117 63 2 9 125 2 111 3.81e-21 87.0
MS.gene71579.t1 MTR_4g094632 41.509 106 60 1 9 114 2 105 3.17e-20 84.3
MS.gene71579.t1 MTR_1g053070 36.667 150 80 3 9 157 2 137 3.22e-19 84.0
MS.gene71579.t1 MTR_4g093970 33.333 165 87 3 10 153 29 191 4.40e-19 83.2
MS.gene71579.t1 MTR_3g005530 52.941 68 32 0 9 76 2 69 6.32e-19 82.4
MS.gene71579.t1 MTR_3g452380 42.453 106 51 1 3 108 11 106 1.18e-18 82.4
MS.gene71579.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 2.49e-18 79.7
MS.gene71579.t1 MTR_4g102530 50.685 73 36 0 10 82 3 75 5.14e-18 79.7
MS.gene71579.t1 MTR_5g066180 51.471 68 33 0 9 76 2 69 1.61e-17 79.0
MS.gene71579.t1 MTR_2g017865 30.270 185 100 4 9 167 17 198 2.91e-17 78.6
MS.gene71579.t1 MTR_3g102570 33.333 171 90 6 9 162 2 165 3.18e-17 79.3
MS.gene71579.t1 MTR_8g033270 51.471 68 33 0 9 76 2 69 3.50e-17 78.6
MS.gene71579.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 5.23e-17 77.8
MS.gene71579.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 6.76e-17 76.3
MS.gene71579.t1 MTR_5g032150 29.384 211 130 6 9 201 2 211 6.81e-17 77.0
MS.gene71579.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 8.77e-17 77.4
MS.gene71579.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 1.40e-16 76.3
MS.gene71579.t1 MTR_5g032520 28.169 213 129 6 9 201 2 210 1.50e-16 76.3
MS.gene71579.t1 MTR_8g022970 32.911 158 93 3 8 159 17 167 2.13e-16 74.7
MS.gene71579.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 2.21e-16 75.9
MS.gene71579.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 2.39e-16 75.9
MS.gene71579.t1 MTR_7g075870 38.182 110 66 1 10 119 3 110 2.45e-16 75.5
MS.gene71579.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 3.52e-16 75.9
MS.gene71579.t1 MTR_4g084740 47.368 76 38 2 9 83 2 76 5.24e-16 76.3
MS.gene71579.t1 MTR_0003s0590 51.471 68 33 0 9 76 2 69 7.27e-16 74.7
MS.gene71579.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 1.21e-15 74.3
MS.gene71579.t1 MTR_8g066260 40.964 83 46 1 9 91 2 81 1.36e-15 73.9
MS.gene71579.t1 MTR_7g016600 49.275 69 34 1 9 76 2 70 1.41e-15 73.9
MS.gene71579.t1 MTR_7g016630 25.822 213 144 5 9 207 2 214 2.22e-15 73.6
MS.gene71579.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 2.38e-15 73.2
MS.gene71579.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 2.39e-15 68.6
MS.gene71579.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 2.47e-15 73.2
MS.gene71579.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.60e-15 73.2
MS.gene71579.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.61e-15 72.8
MS.gene71579.t1 MTR_5g046790 45.070 71 36 1 9 79 2 69 2.65e-15 72.4
MS.gene71579.t1 MTR_7g075870 37.838 111 66 2 10 119 3 111 5.20e-15 71.6
MS.gene71579.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 5.45e-15 69.3
MS.gene71579.t1 MTR_3g437790 33.566 143 78 4 26 159 30 164 6.39e-15 70.9
MS.gene71579.t1 MTR_4g109810 28.455 246 143 12 9 236 2 232 1.16e-14 71.2
MS.gene71579.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 2.11e-14 69.3
MS.gene71579.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 3.47e-14 69.7
MS.gene71579.t1 MTR_1g029670 46.970 66 34 1 9 74 2 66 3.60e-14 68.9
MS.gene71579.t1 MTR_3g109930 31.429 140 80 3 27 159 20 150 3.69e-14 68.6
MS.gene71579.t1 MTR_7g075850 45.714 70 36 1 9 76 2 71 5.88e-14 69.3
MS.gene71579.t1 MTR_3g084980 55.357 56 25 0 9 64 2 57 6.79e-14 69.3
MS.gene71579.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 8.58e-14 68.9
MS.gene71579.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 9.36e-14 64.3
MS.gene71579.t1 MTR_3g113030 47.619 63 33 0 9 71 2 64 1.74e-13 67.8
MS.gene71579.t1 MTR_4g093030 41.892 74 43 0 9 82 2 75 1.14e-12 64.3
MS.gene71579.t1 MTR_4g051538 32.278 158 95 3 5 162 5 150 1.33e-12 65.5
MS.gene71579.t1 MTR_4g108720 26.738 187 115 7 9 183 2 178 3.12e-12 65.5
MS.gene71579.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.21e-11 61.6
MS.gene71579.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.26e-11 62.0
MS.gene71579.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.41e-11 62.0
MS.gene71579.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.50e-11 61.6
MS.gene71579.t1 MTR_2g045020 32.075 159 80 7 7 155 21 161 2.91e-11 60.8
MS.gene71579.t1 MTR_1g041615 34.513 113 64 2 20 132 17 119 7.05e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71579.t1 AT5G60440 53.723 188 80 3 5 189 3 186 7.53e-61 193
MS.gene71579.t1 AT2G24840 49.080 163 72 4 6 162 60 217 2.62e-43 147
MS.gene71579.t1 AT1G65360 38.667 225 123 6 5 223 3 218 4.98e-40 137
MS.gene71579.t1 AT1G01530 40.000 210 103 4 4 192 2 209 9.69e-40 137
MS.gene71579.t1 AT4G36590 45.732 164 79 4 5 160 3 164 1.87e-38 134
MS.gene71579.t1 AT2G34440 45.299 117 55 2 9 121 2 113 6.45e-27 102
MS.gene71579.t1 AT3G66656 41.985 131 71 2 9 134 2 132 7.72e-26 99.8
MS.gene71579.t1 AT3G04100 31.579 152 100 2 2 149 7 158 1.01e-24 97.4
MS.gene71579.t1 AT1G72350 35.374 147 62 3 9 155 43 156 7.56e-23 93.2
MS.gene71579.t1 AT1G28460 31.429 140 93 1 5 141 4 143 1.29e-19 83.6
MS.gene71579.t1 AT4G22950 49.351 77 39 0 10 86 3 79 3.18e-19 82.0
MS.gene71579.t1 AT4G18960 28.689 244 136 8 5 226 15 242 4.04e-19 83.6
MS.gene71579.t1 AT4G09960 46.512 86 45 1 9 93 2 87 4.16e-19 82.8
MS.gene71579.t1 AT4G09960 46.512 86 45 1 9 93 2 87 4.73e-19 83.2
MS.gene71579.t1 AT4G09960 46.512 86 45 1 9 93 3 88 4.86e-19 83.2
MS.gene71579.t1 AT4G09960 46.512 86 45 1 9 93 12 97 6.72e-19 82.8
MS.gene71579.t1 AT4G09960 46.512 86 45 1 9 93 28 113 8.83e-19 82.8
MS.gene71579.t1 AT2G45650 52.941 68 32 0 9 76 2 69 1.15e-18 82.4
MS.gene71579.t1 AT2G45660 52.941 68 32 0 10 77 3 70 1.29e-18 80.1
MS.gene71579.t1 AT4G22950 50.000 76 38 0 10 85 3 78 1.35e-18 81.6
MS.gene71579.t1 AT4G22950 50.000 76 38 0 10 85 3 78 1.35e-18 81.6
MS.gene71579.t1 AT1G29962 29.070 172 115 4 5 169 4 175 2.63e-18 80.1
MS.gene71579.t1 AT4G09960 46.512 86 45 1 9 93 97 182 3.04e-18 82.4
MS.gene71579.t1 AT2G45660 52.941 68 32 0 10 77 3 70 3.48e-18 80.5
MS.gene71579.t1 AT2G22540 51.471 68 33 0 9 76 2 69 1.86e-17 79.0
MS.gene71579.t1 AT2G22540 51.471 68 33 0 9 76 2 69 1.86e-17 79.0
MS.gene71579.t1 AT5G51870 53.731 67 31 0 10 76 3 69 2.38e-17 77.0
MS.gene71579.t1 AT5G51870 53.731 67 31 0 10 76 3 69 2.94e-17 77.8
MS.gene71579.t1 AT4G24540 36.567 134 73 4 9 132 2 133 4.17e-17 77.8
MS.gene71579.t1 AT3G57230 47.059 68 36 0 9 76 2 69 4.18e-17 75.9
MS.gene71579.t1 AT2G42830 47.368 76 40 0 1 76 9 84 5.15e-17 77.8
MS.gene71579.t1 AT5G51870 50.000 72 36 0 5 76 21 92 5.85e-17 76.6
MS.gene71579.t1 AT2G42830 47.368 76 40 0 1 76 9 84 6.00e-17 77.8
MS.gene71579.t1 AT1G22130 36.441 118 73 2 9 125 2 118 6.48e-17 79.0
MS.gene71579.t1 AT5G51870 53.731 67 31 0 10 76 3 69 6.63e-17 77.0
MS.gene71579.t1 AT3G58780 50.704 71 35 0 6 76 14 84 6.92e-17 77.4
MS.gene71579.t1 AT3G58780 50.704 71 35 0 6 76 20 90 7.04e-17 77.8
MS.gene71579.t1 AT5G51870 53.731 67 31 0 10 76 13 79 7.78e-17 77.0
MS.gene71579.t1 AT3G61120 51.471 68 33 0 9 76 2 69 8.39e-17 77.4
MS.gene71579.t1 AT5G10140 50.725 69 33 1 9 76 2 70 8.85e-17 75.5
MS.gene71579.t1 AT3G57390 50.000 68 34 0 9 76 2 69 9.33e-17 76.6
MS.gene71579.t1 AT5G62165 49.254 67 34 0 10 76 3 69 9.53e-17 73.9
MS.gene71579.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.00e-16 76.6
MS.gene71579.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.11e-16 76.6
MS.gene71579.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.23e-16 75.5
MS.gene71579.t1 AT1G77980 38.095 105 64 1 9 112 2 106 1.27e-16 78.2
MS.gene71579.t1 AT1G77950 47.368 76 38 2 9 83 2 76 1.29e-16 77.0
MS.gene71579.t1 AT1G77950 47.368 76 38 2 9 83 2 76 1.29e-16 77.0
MS.gene71579.t1 AT1G77950 47.368 76 38 2 9 83 2 76 1.29e-16 77.0
MS.gene71579.t1 AT1G77950 47.368 76 38 2 9 83 2 76 1.29e-16 77.0
MS.gene71579.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.32e-16 75.5
MS.gene71579.t1 AT3G58780 50.704 71 35 0 6 76 14 84 1.37e-16 77.4
MS.gene71579.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.58e-16 74.3
MS.gene71579.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.58e-16 74.3
MS.gene71579.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.58e-16 74.3
MS.gene71579.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.58e-16 74.3
MS.gene71579.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.58e-16 74.3
MS.gene71579.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.65e-16 75.5
MS.gene71579.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.72e-16 75.1
MS.gene71579.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.73e-16 76.3
MS.gene71579.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.73e-16 76.3
MS.gene71579.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.82e-16 74.3
MS.gene71579.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.82e-16 74.3
MS.gene71579.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.82e-16 74.3
MS.gene71579.t1 AT5G13790 43.011 93 44 1 9 101 2 85 2.11e-16 76.6
MS.gene71579.t1 AT3G57390 50.000 68 34 0 9 76 2 69 2.18e-16 76.3
MS.gene71579.t1 AT5G13790 51.471 68 33 0 9 76 2 69 2.92e-16 76.3
MS.gene71579.t1 AT4G11880 48.611 72 36 1 10 80 3 74 3.91e-16 73.9
MS.gene71579.t1 AT4G11880 48.611 72 36 1 10 80 3 74 3.91e-16 73.9
MS.gene71579.t1 AT1G69120 40.659 91 51 1 9 99 2 89 4.05e-16 75.1
MS.gene71579.t1 AT2G22630 47.059 68 36 0 9 76 2 69 4.05e-16 75.1
MS.gene71579.t1 AT2G22630 47.059 68 36 0 9 76 2 69 4.05e-16 75.1
MS.gene71579.t1 AT5G51860 52.239 67 32 0 10 76 3 69 5.50e-16 74.3
MS.gene71579.t1 AT1G28450 29.371 143 95 3 5 141 4 146 5.58e-16 73.9
MS.gene71579.t1 AT5G51860 52.239 67 32 0 10 76 3 69 6.59e-16 74.3
MS.gene71579.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.97e-16 73.9
MS.gene71579.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.97e-16 73.9
MS.gene71579.t1 AT5G60910 49.296 71 33 1 9 79 2 69 6.99e-16 74.7
MS.gene71579.t1 AT3G54340 29.487 156 86 3 9 162 2 135 7.22e-16 74.3
MS.gene71579.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.55e-16 73.9
MS.gene71579.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.55e-16 73.9
MS.gene71579.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.55e-16 73.9
MS.gene71579.t1 AT4G11880 48.611 72 36 1 10 80 3 74 9.47e-16 73.9
MS.gene71579.t1 AT4G11880 48.611 72 36 1 10 80 3 74 9.47e-16 73.9
MS.gene71579.t1 AT1G69120 40.659 91 51 1 9 99 2 89 9.70e-16 74.7
MS.gene71579.t1 AT1G26310 47.826 69 35 1 9 76 2 70 1.04e-15 74.3
MS.gene71579.t1 AT3G30260 46.377 69 36 1 9 76 2 70 1.32e-15 73.9
MS.gene71579.t1 AT5G23260 44.330 97 46 3 2 90 9 105 2.00e-15 73.9
MS.gene71579.t1 AT5G23260 44.330 97 46 3 2 90 9 105 2.12e-15 73.9
MS.gene71579.t1 AT5G20240 47.143 70 35 1 9 76 2 71 2.76e-15 71.2
MS.gene71579.t1 AT5G15800 49.275 69 34 1 9 76 2 70 2.86e-15 73.2
MS.gene71579.t1 AT5G23260 45.455 88 42 2 9 90 2 89 3.57e-15 72.8
MS.gene71579.t1 AT5G23260 45.455 88 42 2 9 90 2 89 4.03e-15 72.8
MS.gene71579.t1 AT2G22540 50.000 68 29 1 9 76 2 64 4.14e-15 72.4
MS.gene71579.t1 AT5G15800 49.275 69 34 1 9 76 2 70 4.81e-15 72.8
MS.gene71579.t1 AT5G20240 47.143 70 35 1 9 76 2 71 5.22e-15 71.6
MS.gene71579.t1 AT1G17310 51.899 79 36 1 8 86 47 123 6.64e-15 71.6
MS.gene71579.t1 AT5G65050 30.412 194 111 7 9 193 2 180 6.87e-15 70.9
MS.gene71579.t1 AT2G14210 46.377 69 36 1 9 76 2 70 8.02e-15 71.6
MS.gene71579.t1 AT1G17310 51.899 79 36 1 8 86 58 134 8.37e-15 71.6
MS.gene71579.t1 AT5G65050 27.979 193 120 8 9 193 2 183 8.93e-15 70.5
MS.gene71579.t1 AT2G14210 46.377 69 36 1 9 76 2 70 1.09e-14 71.2
MS.gene71579.t1 AT3G58780 53.333 60 28 0 6 65 14 73 1.86e-14 70.9
MS.gene71579.t1 AT3G02310 47.826 69 35 1 9 76 2 70 1.99e-14 70.1
MS.gene71579.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.24e-14 69.3
MS.gene71579.t1 AT1G24260 28.226 248 142 9 9 234 2 235 2.27e-14 70.9
MS.gene71579.t1 AT3G58780 53.333 60 28 0 6 65 14 73 2.45e-14 70.9
MS.gene71579.t1 AT1G24260 29.114 237 140 8 9 234 2 221 3.09e-14 70.1
MS.gene71579.t1 AT2G03710 53.571 56 26 0 9 64 2 57 3.87e-14 68.9
MS.gene71579.t1 AT5G65050 46.377 69 36 1 9 76 2 70 4.19e-14 68.9
MS.gene71579.t1 AT3G02310 47.826 69 35 1 9 76 2 70 4.89e-14 69.7
MS.gene71579.t1 AT2G03710 47.143 70 35 2 9 76 2 71 7.69e-14 69.3
MS.gene71579.t1 AT5G65060 46.377 69 36 1 9 76 2 70 8.06e-14 68.2
MS.gene71579.t1 AT2G03710 47.143 70 35 2 9 76 2 71 8.26e-14 69.3
MS.gene71579.t1 AT5G65060 46.377 69 36 1 9 76 2 70 8.44e-14 67.8
MS.gene71579.t1 AT1G47760 31.788 151 82 5 9 156 2 134 8.81e-14 67.8
MS.gene71579.t1 AT1G24260 53.571 56 26 0 9 64 2 57 9.83e-14 68.9
MS.gene71579.t1 AT5G65060 46.377 69 36 1 9 76 2 70 1.07e-13 67.8
MS.gene71579.t1 AT1G71692 44.286 70 38 1 9 77 2 71 1.31e-13 67.8
MS.gene71579.t1 AT5G65070 42.029 69 39 1 9 76 2 70 3.59e-13 65.5
MS.gene71579.t1 AT5G65070 42.029 69 39 1 9 76 2 70 6.04e-13 65.9
MS.gene71579.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.13e-12 65.5
MS.gene71579.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.25e-12 65.5
MS.gene71579.t1 AT1G18750 25.806 186 119 6 9 177 2 185 4.45e-12 65.1
MS.gene71579.t1 AT1G18750 25.806 186 119 6 9 177 2 185 5.24e-12 65.1
MS.gene71579.t1 AT5G65070 47.368 57 30 0 9 65 2 58 5.76e-12 63.5
MS.gene71579.t1 AT1G69540 32.727 110 66 3 9 117 2 104 1.73e-11 63.5
MS.gene71579.t1 AT4G37435 40.278 72 42 1 9 79 2 73 1.87e-11 61.6
MS.gene71579.t1 AT1G69540 32.727 110 66 3 9 117 2 104 1.95e-11 63.2
MS.gene71579.t1 AT1G18750 37.333 75 45 1 9 81 2 76 3.91e-11 62.4
MS.gene71579.t1 AT2G26320 40.000 70 40 1 9 76 18 87 4.21e-11 58.9
MS.gene71579.t1 AT5G65080 42.029 69 39 1 9 76 9 77 5.73e-11 60.1
MS.gene71579.t1 AT2G03060 39.286 84 48 3 9 90 2 84 6.85e-11 61.6
MS.gene71579.t1 AT2G03060 39.286 84 48 3 9 90 2 84 6.85e-11 61.6
MS.gene71579.t1 AT2G03060 39.286 84 48 3 9 90 2 84 6.85e-11 61.6
MS.gene71579.t1 AT2G03060 39.286 84 48 3 9 90 2 84 6.92e-11 61.6
MS.gene71579.t1 AT5G65080 43.548 62 35 0 1 62 1 62 8.26e-11 60.1

Find 52 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGAGTTTGCGGAGGATT+TGG 0.289021 1.4:+81701155 None:intergenic
TGGTGGGCTGGTCCCGTTGA+TGG 0.303436 1.4:-81701341 MS.gene71579:CDS
GATCAACCAGCTACTGGATA+TGG 0.309226 1.4:-81701420 MS.gene71579:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 1.4:+81701498 None:intergenic
ATGTTGCAACCTCACTTGTT+TGG 0.376512 1.4:-81701104 MS.gene71579:CDS
AAGGAGACTAAGAAACTTGT+TGG 0.377140 1.4:-81701278 MS.gene71579:CDS
GGGCTCAGATCAAAAGAATC+TGG 0.407516 1.4:+81701043 None:intergenic
CTTGTTTGGCTTCAACAATA+CGG 0.429938 1.4:-81701090 MS.gene71579:CDS
GTCCCGTTGATGGGATGAAT+AGG 0.432754 1.4:-81701331 MS.gene71579:CDS
GCGGAGGATTTGGTTGATGA+TGG 0.439291 1.4:+81701165 None:intergenic
GGTGGGCTGGTCCCGTTGAT+GGG 0.452333 1.4:-81701340 MS.gene71579:CDS
TCCCGTTGATGGGATGAATA+GGG 0.453040 1.4:-81701330 MS.gene71579:CDS
TCTTCTCCATATCCAGTAGC+TGG 0.455839 1.4:+81701414 None:intergenic
AGGCGACCGAGAGTCAGTTT+TGG 0.458130 1.4:-81701361 MS.gene71579:CDS
TTGTTTGGCTTCAACAATAC+GGG 0.463078 1.4:-81701089 MS.gene71579:CDS
TGCTGATAGACTTGTAATCC+AGG 0.479655 1.4:-81701249 MS.gene71579:CDS
GCCCTATTCATCCCATCAAC+GGG 0.481029 1.4:+81701329 None:intergenic
AGTATTGAGCTCGCGCACAT+TGG 0.504609 1.4:+81701454 None:intergenic
GTTGGAAACATTTGAGTTTG+CGG 0.508183 1.4:+81701146 None:intergenic
GACTCAGATCAACCAGCTAC+TGG 0.508380 1.4:-81701426 MS.gene71579:CDS
GTCTATGACCGTATCAACAT+TGG 0.509296 1.4:+81701544 None:intergenic
GCAGAGAGTGCAAAGCTCAC+TGG 0.516982 1.4:+81701628 None:intergenic
GGCCCTATTCATCCCATCAA+CGG 0.536262 1.4:+81701328 None:intergenic
AACAAGTGAGGTTGCAACAT+AGG 0.539918 1.4:+81701107 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.542196 1.4:+81701545 None:intergenic
TGGCCAACCCAATGTTGATA+CGG 0.545005 1.4:-81701552 MS.gene71579:CDS
GCTCGCGCACATTGGCGCTA+CGG 0.552531 1.4:+81701462 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 1.4:-81701664 MS.gene71579:CDS
CTTCAACCATGTCGAGTGGA+AGG 0.555433 1.4:-81701751 None:intergenic
GTGGGACTCGAGAGAGATAA+CGG 0.555728 1.4:+81701522 None:intergenic
AGCCCACCAAAACTGACTCT+CGG 0.565176 1.4:+81701355 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 1.4:-81701665 MS.gene71579:CDS
AATGAAAATACCTTCTCCCC+AGG 0.587583 1.4:+81701575 None:intergenic
AGAGCTGAGCAACTTGCGCA+AGG 0.589828 1.4:-81701381 MS.gene71579:CDS
TGACCGTATCAACATTGGGT+TGG 0.600758 1.4:+81701549 None:intergenic
AGGTTTGAGTAGGAGCACCC+TGG 0.605264 1.4:+81701231 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 1.4:+81701651 None:intergenic
GGATTTGGTTGATGATGGAG+AGG 0.611456 1.4:+81701170 None:intergenic
TGTTTGGCTTCAACAATACG+GGG 0.616084 1.4:-81701088 MS.gene71579:CDS
AGTGAGCTTTGCACTCTCTG+CGG 0.622154 1.4:-81701626 MS.gene71579:CDS
TGAGCTTCAACCATGTCGAG+TGG 0.629588 1.4:-81701755 None:intergenic
CTCAGATCAAAAGAATCTGG+AGG 0.633945 1.4:+81701046 None:intergenic
TGGTACCATGCAATTCATTG+AGG 0.638950 1.4:-81701489 MS.gene71579:CDS
CGAGTCCCACCCCAAAACAA+TGG 0.639467 1.4:-81701509 MS.gene71579:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 1.4:+81701484 None:intergenic
GCTGATAGACTTGTAATCCA+GGG 0.644111 1.4:-81701248 MS.gene71579:CDS
GGAAACATTTGAGTTTGCGG+AGG 0.647148 1.4:+81701149 None:intergenic
TTGTTGAAGCCAAACAAGTG+AGG 0.651690 1.4:+81701095 None:intergenic
TCAGATCAAAAGAATCTGGA+GGG 0.666536 1.4:+81701047 None:intergenic
TTTGGCTTCAACAATACGGG+GGG 0.687957 1.4:-81701086 MS.gene71579:CDS
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 1.4:-81701740 MS.gene71579:CDS
GTTTGGCTTCAACAATACGG+GGG 0.701007 1.4:-81701087 MS.gene71579:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTGAAAAATTCAAGTT+GGG + chr1.4:81701491-81701510 None:intergenic 20.0%
!!! TTTTTTTCATCTCAATCTTT+TGG + chr1.4:81701084-81701103 None:intergenic 20.0%
! AAAAATTGAAAGGTTTGAGT+AGG + chr1.4:81701577-81701596 None:intergenic 25.0%
! ATTTCCACCAAAAAATTGAA+AGG + chr1.4:81701587-81701606 None:intergenic 25.0%
!!! ACTCAAACCTTTCAATTTTT+TGG - chr1.4:81701577-81701596 MS.gene71579:CDS 25.0%
!!! ATTTTTCAAAAAGGCTTTGA+AGG - chr1.4:81701498-81701517 MS.gene71579:CDS 25.0%
!!! CCAACTTGAATTTTTCAAAA+AGG - chr1.4:81701489-81701508 MS.gene71579:CDS 25.0%
!!! CCTTTTTGAAAAATTCAAGT+TGG + chr1.4:81701492-81701511 None:intergenic 25.0%
!!! TTTCAATTTTTTGGTGGAAA+TGG - chr1.4:81701586-81701605 MS.gene71579:CDS 25.0%
!!! CAAACCTTTCAATTTTTTGG+TGG - chr1.4:81701580-81701599 MS.gene71579:CDS 30.0%
AAGGAGACTAAGAAACTTGT+TGG - chr1.4:81701517-81701536 MS.gene71579:CDS 35.0%
TCTATGACCGTATCAACATT+GGG + chr1.4:81701253-81701272 None:intergenic 35.0%
! ATTGCATGGTACCATTGTTT+TGG + chr1.4:81701300-81701319 None:intergenic 35.0%
! CTTGTTTGGCTTCAACAATA+CGG - chr1.4:81701705-81701724 MS.gene71579:CDS 35.0%
! GGATTCTGAAAAAACTGTGT+TGG + chr1.4:81701670-81701689 None:intergenic 35.0%
! GTTGGAAACATTTGAGTTTG+CGG + chr1.4:81701652-81701671 None:intergenic 35.0%
! TTGCATGGTACCATTGTTTT+GGG + chr1.4:81701299-81701318 None:intergenic 35.0%
! TTGTTTGGCTTCAACAATAC+GGG - chr1.4:81701706-81701725 MS.gene71579:CDS 35.0%
AACAAGTGAGGTTGCAACAT+AGG + chr1.4:81701691-81701710 None:intergenic 40.0%
AATGAAAATACCTTCTCCCC+AGG + chr1.4:81701223-81701242 None:intergenic 40.0%
ATGTTGCAACCTCACTTGTT+TGG - chr1.4:81701691-81701710 MS.gene71579:CDS 40.0%
GCTGATAGACTTGTAATCCA+GGG - chr1.4:81701547-81701566 MS.gene71579:CDS 40.0%
GTCTATGACCGTATCAACAT+TGG + chr1.4:81701254-81701273 None:intergenic 40.0%
TGCTGATAGACTTGTAATCC+AGG - chr1.4:81701546-81701565 MS.gene71579:CDS 40.0%
TGGTACCATGCAATTCATTG+AGG - chr1.4:81701306-81701325 MS.gene71579:CDS 40.0%
TTGTTGAAGCCAAACAAGTG+AGG + chr1.4:81701703-81701722 None:intergenic 40.0%
! ATTTGAGTTTGCGGAGGATT+TGG + chr1.4:81701643-81701662 None:intergenic 40.0%
! TGTTTGGCTTCAACAATACG+GGG - chr1.4:81701707-81701726 MS.gene71579:CDS 40.0%
!! TGCATGGTACCATTGTTTTG+GGG + chr1.4:81701298-81701317 None:intergenic 40.0%
!!! GGGGAGAAGGTATTTTCATT+TGG - chr1.4:81701223-81701242 MS.gene71579:CDS 40.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr1.4:81701147-81701166 None:intergenic 45.0%
GATCAACCAGCTACTGGATA+TGG - chr1.4:81701375-81701394 MS.gene71579:CDS 45.0%
GTGAGCCTCAATGAATTGCA+TGG + chr1.4:81701314-81701333 None:intergenic 45.0%
TCTTCTCCATATCCAGTAGC+TGG + chr1.4:81701384-81701403 None:intergenic 45.0%
TGACCGTATCAACATTGGGT+TGG + chr1.4:81701249-81701268 None:intergenic 45.0%
TGGCCAACCCAATGTTGATA+CGG - chr1.4:81701243-81701262 MS.gene71579:CDS 45.0%
! GGAAACATTTGAGTTTGCGG+AGG + chr1.4:81701649-81701668 None:intergenic 45.0%
! GTTTGGCTTCAACAATACGG+GGG - chr1.4:81701708-81701727 MS.gene71579:CDS 45.0%
! TCCCGTTGATGGGATGAATA+GGG - chr1.4:81701465-81701484 MS.gene71579:CDS 45.0%
! TCTCAATCTTTTGGCGACCT+CGG + chr1.4:81701075-81701094 None:intergenic 45.0%
! TTTGGCTTCAACAATACGGG+GGG - chr1.4:81701709-81701728 MS.gene71579:CDS 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG - chr1.4:81701203-81701222 MS.gene71579:CDS 45.0%
!! GGATTTGGTTGATGATGGAG+AGG + chr1.4:81701628-81701647 None:intergenic 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG - chr1.4:81701204-81701223 MS.gene71579:CDS 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG + chr1.4:81701295-81701314 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG + chr1.4:81701294-81701313 None:intergenic 45.0%
AGTGAGCTTTGCACTCTCTG+CGG - chr1.4:81701169-81701188 MS.gene71579:CDS 50.0%
GACTCAGATCAACCAGCTAC+TGG - chr1.4:81701369-81701388 MS.gene71579:CDS 50.0%
GCCCTATTCATCCCATCAAC+GGG + chr1.4:81701469-81701488 None:intergenic 50.0%
GGCCCTATTCATCCCATCAA+CGG + chr1.4:81701470-81701489 None:intergenic 50.0%
GTGGGACTCGAGAGAGATAA+CGG + chr1.4:81701276-81701295 None:intergenic 50.0%
! AGCCCACCAAAACTGACTCT+CGG + chr1.4:81701443-81701462 None:intergenic 50.0%
! AGTATTGAGCTCGCGCACAT+TGG + chr1.4:81701344-81701363 None:intergenic 50.0%
! GTCCCGTTGATGGGATGAAT+AGG - chr1.4:81701464-81701483 MS.gene71579:CDS 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG - chr1.4:81701210-81701229 MS.gene71579:CDS 50.0%
!! GACCGAGAGTCAGTTTTGGT+GGG - chr1.4:81701438-81701457 MS.gene71579:CDS 50.0%
!! GCGGAGGATTTGGTTGATGA+TGG + chr1.4:81701633-81701652 None:intergenic 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG - chr1.4:81701202-81701221 MS.gene71579:CDS 50.0%
AGAGCTGAGCAACTTGCGCA+AGG - chr1.4:81701414-81701433 MS.gene71579:CDS 55.0%
CGAGTCCCACCCCAAAACAA+TGG - chr1.4:81701286-81701305 MS.gene71579:CDS 55.0%
CTTCAACAATACGGGGGGAG+GGG - chr1.4:81701714-81701733 MS.gene71579:CDS 55.0%
GCTTCAACAATACGGGGGGA+GGG - chr1.4:81701713-81701732 MS.gene71579:CDS 55.0%
TCGAGTGGAAGGAAAAGCCG+AGG - chr1.4:81701055-81701074 MS.gene71579:CDS 55.0%
TTCAACAATACGGGGGGAGG+GGG - chr1.4:81701715-81701734 MS.gene71579:CDS 55.0%
! AGGCGACCGAGAGTCAGTTT+TGG - chr1.4:81701434-81701453 MS.gene71579:CDS 55.0%
! GCAGAGAGTGCAAAGCTCAC+TGG + chr1.4:81701170-81701189 None:intergenic 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr1.4:81701130-81701149 MS.gene71579:CDS 55.0%
!! AGGTTTGAGTAGGAGCACCC+TGG + chr1.4:81701567-81701586 None:intergenic 55.0%
!! CGACCGAGAGTCAGTTTTGG+TGG - chr1.4:81701437-81701456 MS.gene71579:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr1.4:81701131-81701150 MS.gene71579:CDS 55.0%
!! GAGAGTCAGTTTTGGTGGGC+TGG - chr1.4:81701442-81701461 MS.gene71579:CDS 55.0%
GGCTTCAACAATACGGGGGG+AGG - chr1.4:81701712-81701731 MS.gene71579:CDS 60.0%
AACAATACGGGGGGAGGGGG+TGG - chr1.4:81701718-81701737 MS.gene71579:CDS 65.0%
GCTCGCGCACATTGGCGCTA+CGG + chr1.4:81701336-81701355 None:intergenic 65.0%
!! GGTGGGCTGGTCCCGTTGAT+GGG - chr1.4:81701455-81701474 MS.gene71579:CDS 65.0%
!! TGGTGGGCTGGTCCCGTTGA+TGG - chr1.4:81701454-81701473 MS.gene71579:CDS 65.0%
ACGGGGGGAGGGGGTGGATA+TGG - chr1.4:81701724-81701743 MS.gene71579:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 81701052 81701765 81701052 ID=MS.gene71579
chr1.4 mRNA 81701052 81701765 81701052 ID=MS.gene71579.t1;Parent=MS.gene71579
chr1.4 exon 81701052 81701765 81701052 ID=MS.gene71579.t1.exon1;Parent=MS.gene71579.t1
chr1.4 CDS 81701052 81701765 81701052 ID=cds.MS.gene71579.t1;Parent=MS.gene71579.t1
Gene Sequence

>MS.gene71579

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAATGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGCGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGGTCATAGACCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAATGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAGCTACTGGATATGGAGAAGAAACGTGCTGAAGAGCTGAGCAACTTGCGCAAGGCGACCGAGAGTCAGTTTTGGTGGGCTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTTTTCAAAAAGGCTTTGAAGGAGACTAAGAAACTTGTTGGACATCATGCTGATAGACTTGTAATCCAGGGTGCTCCTACTCAAACCTTTCAATTTTTTGGTGGAAATGGTTCATCTTCTAACATGCCTCTCCATCATCAACCAAATCCTCCGCAAACTCAAATGTTTCCAACACAGTTTTTTCAGAATCCTATGTTGCAACCTCACTTGTTTGGCTTCAACAATACGGGGGGAGGGGGTGGATATGGACCCTCCAGATTCTTTTGA
Protein sequence

>MS.gene71579.t1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGQPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDMEKKRAEELSNLRKATESQFWWAGPVDGMNRAQLEFFKKALKETKKLVGHHADRLVIQGAPTQTFQFFGGNGSSSNMPLHHQPNPPQTQMFPTQFFQNPMLQPHLFGFNNTGGGGGYGPSRFF