AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71581

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71581.t1 MTR_8g043650 89.451 237 25 0 1 237 1 237 8.73e-159 439
MS.gene71581.t1 MTR_1g105910 90.295 237 23 0 1 237 1 237 7.43e-154 427
MS.gene71581.t1 MTR_1g105920 92.237 219 17 0 1 219 1 219 4.20e-152 422
MS.gene71581.t1 MTR_2g030740 91.139 237 21 0 1 237 1 237 2.40e-151 421
MS.gene71581.t1 MTR_3g052920 87.215 219 28 0 1 219 1 219 4.22e-144 402
MS.gene71581.t1 MTR_1g012570 88.186 237 28 0 1 237 1 237 1.00e-143 401
MS.gene71581.t1 MTR_1g105905 82.273 220 39 0 18 237 1 220 2.28e-134 377
MS.gene71581.t1 MTR_3g052870 80.365 219 24 1 1 219 1 200 6.32e-125 353
MS.gene71581.t1 MTR_0121s0080 72.152 237 65 1 1 237 1 236 9.58e-121 343
MS.gene71581.t1 MTR_5g055100 67.932 237 76 0 1 237 1 237 2.18e-120 342
MS.gene71581.t1 MTR_3g030770 73.617 235 44 3 1 225 1 227 4.32e-120 341
MS.gene71581.t1 MTR_1g108510 73.617 235 44 3 1 225 1 227 1.29e-119 340
MS.gene71581.t1 MTR_1g106070 89.011 182 20 0 1 182 1 182 5.48e-119 337
MS.gene71581.t1 MTR_1g077360 71.111 225 65 0 1 225 1 225 1.04e-118 338
MS.gene71581.t1 MTR_2g093190 73.191 235 45 3 1 225 1 227 1.45e-117 335
MS.gene71581.t1 MTR_2g085280 66.525 236 79 0 1 236 1 236 4.87e-117 334
MS.gene71581.t1 MTR_1g075600 70.667 225 66 0 1 225 1 225 1.07e-116 333
MS.gene71581.t1 MTR_2g085250 66.525 236 79 0 1 236 1 236 1.26e-116 333
MS.gene71581.t1 MTR_5g045560 69.620 237 72 0 1 237 1 237 7.98e-114 326
MS.gene71581.t1 MTR_1g108580 71.064 235 50 3 1 225 1 227 8.29e-114 325
MS.gene71581.t1 MTR_5g053390 68.444 225 71 0 1 225 1 225 4.79e-112 321
MS.gene71581.t1 MTR_7g062350 64.831 236 81 2 3 237 14 248 3.65e-102 296
MS.gene71581.t1 MTR_0121s0100 78.906 128 27 0 1 128 1 128 3.56e-69 209
MS.gene71581.t1 MTR_1g075570 63.483 178 51 1 18 195 1 164 3.93e-69 209
MS.gene71581.t1 MTR_3g030780 75.969 129 31 0 1 129 1 129 3.15e-65 199
MS.gene71581.t1 MTR_3g080940 56.024 166 73 0 7 172 7 172 7.73e-65 200
MS.gene71581.t1 MTR_3g067910 69.608 102 31 0 21 122 2 103 5.50e-47 151
MS.gene71581.t1 MTR_2g105290 39.306 173 95 2 5 174 8 173 1.04e-40 137
MS.gene71581.t1 MTR_8g086290 41.566 166 87 2 5 167 8 166 2.11e-40 137
MS.gene71581.t1 MTR_7g028448 44.516 155 74 3 5 159 8 150 1.90e-34 121
MS.gene71581.t1 MTR_4g036915 44.516 155 74 3 5 159 8 150 1.90e-34 121
MS.gene71581.t1 MTR_1g108500 64.948 97 13 1 22 118 110 185 9.50e-32 119
MS.gene71581.t1 MTR_4g127140 37.500 184 95 4 5 175 8 184 7.67e-31 112
MS.gene71581.t1 MTR_3g067875 82.143 56 10 0 18 73 1 56 3.75e-27 99.8
MS.gene71581.t1 MTR_3g067915 52.128 94 45 0 33 126 3 96 2.15e-25 95.9
MS.gene71581.t1 MTR_1g047550 62.319 69 26 0 9 77 2 70 1.67e-24 96.3
MS.gene71581.t1 MTR_8g079502 62.319 69 26 0 9 77 2 70 3.39e-24 95.5
MS.gene71581.t1 MTR_4g131030 40.517 116 54 2 9 109 2 117 1.45e-23 94.7
MS.gene71581.t1 MTR_1g054265 46.535 101 52 1 9 109 2 100 1.52e-23 93.6
MS.gene71581.t1 MTR_1g063160 48.544 103 51 2 9 109 2 104 1.64e-23 93.6
MS.gene71581.t1 MTR_8g051580 42.857 126 67 2 9 131 2 125 1.78e-23 93.6
MS.gene71581.t1 MTR_3g067870 68.254 63 20 0 16 78 83 145 2.98e-23 92.4
MS.gene71581.t1 MTR_8g046350 40.152 132 67 3 9 135 2 126 1.45e-22 90.5
MS.gene71581.t1 MTR_4g094632 40.708 113 64 2 9 120 2 112 1.67e-20 85.1
MS.gene71581.t1 MTR_4g093970 33.735 166 87 3 10 154 29 192 2.71e-19 84.0
MS.gene71581.t1 MTR_3g005530 52.941 68 32 0 9 76 2 69 4.54e-19 82.8
MS.gene71581.t1 MTR_3g452380 42.453 106 51 1 3 108 11 106 6.66e-19 82.8
MS.gene71581.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 1.92e-18 80.1
MS.gene71581.t1 MTR_1g053070 49.383 81 41 0 9 89 2 82 3.36e-18 81.3
MS.gene71581.t1 MTR_4g102530 50.685 73 36 0 10 82 3 75 3.47e-18 80.1
MS.gene71581.t1 MTR_8g022970 33.544 158 92 3 8 159 17 167 1.11e-17 78.2
MS.gene71581.t1 MTR_8g033270 33.929 168 95 5 9 167 2 162 1.70e-17 79.3
MS.gene71581.t1 MTR_5g066180 51.471 68 33 0 9 76 2 69 1.89e-17 78.6
MS.gene71581.t1 MTR_2g017865 41.346 104 60 1 9 112 17 119 3.09e-17 78.6
MS.gene71581.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 3.62e-17 78.2
MS.gene71581.t1 MTR_3g102570 42.308 104 57 3 9 111 2 103 6.24e-17 78.6
MS.gene71581.t1 MTR_5g032520 29.108 213 127 6 9 201 2 210 9.67e-17 76.6
MS.gene71581.t1 MTR_3g437790 34.965 143 76 4 26 159 30 164 1.04e-16 75.9
MS.gene71581.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 1.45e-16 75.5
MS.gene71581.t1 MTR_5g032150 48.529 68 35 0 9 76 2 69 1.46e-16 76.3
MS.gene71581.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 1.58e-16 76.3
MS.gene71581.t1 MTR_7g075870 38.182 110 66 1 10 119 3 110 1.61e-16 75.9
MS.gene71581.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 1.63e-16 76.6
MS.gene71581.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 1.73e-16 75.9
MS.gene71581.t1 MTR_8g033220 29.004 231 120 6 10 220 3 209 1.76e-16 76.3
MS.gene71581.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 4.34e-16 75.9
MS.gene71581.t1 MTR_0003s0590 42.683 82 47 0 9 90 2 83 6.85e-16 75.1
MS.gene71581.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 1.52e-15 73.9
MS.gene71581.t1 MTR_4g084740 47.368 76 38 2 9 83 2 76 1.55e-15 74.7
MS.gene71581.t1 MTR_7g016600 49.275 69 34 1 9 76 2 70 1.59e-15 73.9
MS.gene71581.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 1.61e-15 69.3
MS.gene71581.t1 MTR_8g066260 40.964 83 46 1 9 91 2 81 1.89e-15 73.6
MS.gene71581.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 1.92e-15 73.2
MS.gene71581.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.04e-15 73.2
MS.gene71581.t1 MTR_7g075870 37.838 111 66 2 10 119 3 111 3.39e-15 72.4
MS.gene71581.t1 MTR_5g046790 45.070 71 36 1 9 79 2 69 3.53e-15 72.0
MS.gene71581.t1 MTR_4g109810 29.167 240 137 12 9 230 2 226 4.07e-15 72.4
MS.gene71581.t1 MTR_3g109930 32.143 140 79 3 27 159 20 150 5.32e-15 70.9
MS.gene71581.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 6.23e-15 72.0
MS.gene71581.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 6.31e-15 68.9
MS.gene71581.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 6.45e-15 72.0
MS.gene71581.t1 MTR_7g016630 43.478 69 38 1 9 76 2 70 2.79e-14 70.5
MS.gene71581.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 3.59e-14 68.9
MS.gene71581.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 3.79e-14 65.5
MS.gene71581.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 3.80e-14 69.7
MS.gene71581.t1 MTR_7g075850 45.714 70 36 1 9 76 2 71 5.99e-14 69.3
MS.gene71581.t1 MTR_1g029670 46.970 66 34 1 9 74 2 66 6.70e-14 68.2
MS.gene71581.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 7.46e-14 68.9
MS.gene71581.t1 MTR_3g084980 47.826 69 35 1 9 76 2 70 8.46e-14 68.9
MS.gene71581.t1 MTR_3g113030 28.814 177 98 5 9 181 2 154 1.89e-13 67.8
MS.gene71581.t1 MTR_4g093030 41.892 74 43 0 9 82 2 75 3.30e-12 63.2
MS.gene71581.t1 MTR_4g051538 30.198 202 112 6 5 198 5 185 5.52e-12 63.9
MS.gene71581.t1 MTR_2g045020 31.288 163 84 7 7 159 21 165 1.13e-11 62.0
MS.gene71581.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.96e-11 60.8
MS.gene71581.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 3.02e-11 60.8
MS.gene71581.t1 MTR_4g108720 38.202 89 50 3 9 93 2 89 3.06e-11 62.8
MS.gene71581.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 3.14e-11 60.8
MS.gene71581.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 3.30e-11 61.2
MS.gene71581.t1 MTR_1g041615 36.190 105 58 2 20 123 17 113 9.46e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71581.t1 AT5G60440 55.914 186 75 3 5 187 3 184 5.68e-64 201
MS.gene71581.t1 AT2G24840 49.390 164 72 4 6 163 60 218 2.96e-45 152
MS.gene71581.t1 AT1G01530 42.632 190 101 3 4 192 2 184 1.72e-42 144
MS.gene71581.t1 AT1G65360 40.088 227 121 6 5 225 3 220 2.94e-42 143
MS.gene71581.t1 AT4G36590 46.341 164 78 4 5 160 3 164 2.27e-39 136
MS.gene71581.t1 AT2G34440 45.299 117 55 2 9 121 2 113 8.78e-27 102
MS.gene71581.t1 AT3G04100 32.099 162 106 3 2 159 7 168 1.36e-25 99.8
MS.gene71581.t1 AT3G66656 43.697 119 63 1 9 123 2 120 1.54e-25 99.0
MS.gene71581.t1 AT1G72350 35.526 152 65 4 9 160 43 161 2.68e-22 91.7
MS.gene71581.t1 AT1G28460 29.586 169 115 2 5 169 4 172 2.20e-20 85.5
MS.gene71581.t1 AT4G22950 49.351 77 39 0 10 86 3 79 2.16e-19 82.8
MS.gene71581.t1 AT1G29962 29.651 172 114 4 5 169 4 175 2.49e-19 82.8
MS.gene71581.t1 AT4G09960 46.512 86 45 1 9 93 2 87 2.70e-19 83.6
MS.gene71581.t1 AT4G09960 46.512 86 45 1 9 93 2 87 2.97e-19 83.6
MS.gene71581.t1 AT4G09960 46.512 86 45 1 9 93 3 88 3.39e-19 83.6
MS.gene71581.t1 AT4G09960 46.512 86 45 1 9 93 12 97 4.78e-19 83.2
MS.gene71581.t1 AT4G22950 40.909 110 62 1 10 119 3 109 5.59e-19 82.8
MS.gene71581.t1 AT4G22950 40.909 110 62 1 10 119 3 109 5.59e-19 82.8
MS.gene71581.t1 AT4G09960 46.512 86 45 1 9 93 28 113 6.17e-19 83.2
MS.gene71581.t1 AT2G22540 37.791 172 82 7 9 161 2 167 8.42e-19 82.8
MS.gene71581.t1 AT2G22540 37.791 172 82 7 9 161 2 167 8.42e-19 82.8
MS.gene71581.t1 AT2G45660 52.941 68 32 0 10 77 3 70 1.05e-18 80.5
MS.gene71581.t1 AT2G45650 52.941 68 32 0 9 76 2 69 1.48e-18 82.0
MS.gene71581.t1 AT4G09960 46.512 86 45 1 9 93 97 182 1.78e-18 83.2
MS.gene71581.t1 AT2G45660 52.941 68 32 0 10 77 3 70 3.27e-18 80.5
MS.gene71581.t1 AT4G18960 31.513 238 137 10 5 226 15 242 4.81e-18 80.9
MS.gene71581.t1 AT5G51870 53.731 67 31 0 10 76 3 69 3.32e-17 76.6
MS.gene71581.t1 AT3G57230 47.059 68 36 0 9 76 2 69 3.65e-17 75.9
MS.gene71581.t1 AT2G42830 47.368 76 40 0 1 76 9 84 3.96e-17 78.2
MS.gene71581.t1 AT2G42830 47.368 76 40 0 1 76 9 84 4.08e-17 78.2
MS.gene71581.t1 AT5G51870 53.731 67 31 0 10 76 3 69 4.44e-17 77.4
MS.gene71581.t1 AT3G58780 50.704 71 35 0 6 76 20 90 4.88e-17 78.2
MS.gene71581.t1 AT3G58780 50.704 71 35 0 6 76 14 84 4.95e-17 77.8
MS.gene71581.t1 AT3G61120 51.471 68 33 0 9 76 2 69 6.71e-17 77.4
MS.gene71581.t1 AT5G51870 50.000 72 36 0 5 76 21 92 7.27e-17 76.3
MS.gene71581.t1 AT4G24540 51.471 68 33 0 9 76 2 69 8.12e-17 77.0
MS.gene71581.t1 AT5G51870 53.731 67 31 0 10 76 3 69 8.48e-17 76.6
MS.gene71581.t1 AT3G58780 50.704 71 35 0 6 76 14 84 9.67e-17 77.8
MS.gene71581.t1 AT5G51870 53.731 67 31 0 10 76 13 79 1.05e-16 76.6
MS.gene71581.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.18e-16 75.1
MS.gene71581.t1 AT3G57390 50.000 68 34 0 9 76 2 69 1.28e-16 76.6
MS.gene71581.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.40e-16 73.2
MS.gene71581.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.69e-16 75.9
MS.gene71581.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.70e-16 74.7
MS.gene71581.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.70e-16 74.7
MS.gene71581.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.70e-16 74.7
MS.gene71581.t1 AT1G22130 37.143 105 65 1 9 112 2 106 1.70e-16 77.8
MS.gene71581.t1 AT1G28450 27.950 161 110 3 5 159 4 164 1.83e-16 75.1
MS.gene71581.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.84e-16 74.7
MS.gene71581.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.88e-16 75.9
MS.gene71581.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.04e-16 75.1
MS.gene71581.t1 AT5G13790 43.011 93 44 1 9 101 2 85 2.07e-16 76.6
MS.gene71581.t1 AT1G77980 38.095 105 64 1 9 112 2 106 2.10e-16 77.4
MS.gene71581.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.14e-16 74.3
MS.gene71581.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.14e-16 74.3
MS.gene71581.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.14e-16 74.3
MS.gene71581.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.14e-16 74.3
MS.gene71581.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.14e-16 74.3
MS.gene71581.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.20e-16 75.9
MS.gene71581.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.20e-16 75.9
MS.gene71581.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.28e-16 74.7
MS.gene71581.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.35e-16 75.1
MS.gene71581.t1 AT5G13790 51.471 68 33 0 9 76 2 69 2.83e-16 76.3
MS.gene71581.t1 AT3G57390 50.000 68 34 0 9 76 2 69 2.98e-16 75.9
MS.gene71581.t1 AT1G17310 36.310 168 66 5 8 170 47 178 3.04e-16 75.1
MS.gene71581.t1 AT1G17310 36.310 168 66 5 8 170 58 189 3.72e-16 75.1
MS.gene71581.t1 AT2G22540 37.209 172 78 8 9 161 2 162 3.87e-16 75.5
MS.gene71581.t1 AT4G11880 48.611 72 36 1 10 80 3 74 4.33e-16 73.9
MS.gene71581.t1 AT4G11880 48.611 72 36 1 10 80 3 74 4.33e-16 73.9
MS.gene71581.t1 AT1G69120 43.373 83 44 1 9 91 2 81 4.86e-16 75.1
MS.gene71581.t1 AT5G51860 52.239 67 32 0 10 76 3 69 5.01e-16 74.3
MS.gene71581.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.81e-16 74.3
MS.gene71581.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.81e-16 74.3
MS.gene71581.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.81e-16 74.3
MS.gene71581.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.04e-16 73.9
MS.gene71581.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.04e-16 73.9
MS.gene71581.t1 AT5G51860 52.239 67 32 0 10 76 3 69 7.30e-16 73.9
MS.gene71581.t1 AT1G77950 46.053 76 39 2 9 83 2 76 7.90e-16 74.7
MS.gene71581.t1 AT1G77950 46.053 76 39 2 9 83 2 76 7.90e-16 74.7
MS.gene71581.t1 AT1G77950 46.053 76 39 2 9 83 2 76 7.90e-16 74.7
MS.gene71581.t1 AT1G77950 46.053 76 39 2 9 83 2 76 7.90e-16 74.7
MS.gene71581.t1 AT2G22630 47.059 68 36 0 9 76 2 69 8.51e-16 74.3
MS.gene71581.t1 AT2G22630 47.059 68 36 0 9 76 2 69 8.51e-16 74.3
MS.gene71581.t1 AT5G60910 49.296 71 33 1 9 79 2 69 8.74e-16 74.3
MS.gene71581.t1 AT4G11880 48.611 72 36 1 10 80 3 74 9.19e-16 73.9
MS.gene71581.t1 AT4G11880 48.611 72 36 1 10 80 3 74 9.19e-16 73.9
MS.gene71581.t1 AT1G69120 40.659 91 51 1 9 99 2 89 1.04e-15 74.3
MS.gene71581.t1 AT1G26310 47.826 69 35 1 9 76 2 70 1.40e-15 73.9
MS.gene71581.t1 AT3G54340 47.143 70 35 1 9 76 2 71 1.73e-15 73.6
MS.gene71581.t1 AT3G30260 46.377 69 36 1 9 76 2 70 1.88e-15 73.6
MS.gene71581.t1 AT5G15800 49.275 69 34 1 9 76 2 70 3.19e-15 73.2
MS.gene71581.t1 AT1G24260 29.583 240 135 9 9 234 2 221 4.71e-15 72.4
MS.gene71581.t1 AT5G20240 47.143 70 35 1 9 76 2 71 4.97e-15 70.5
MS.gene71581.t1 AT5G15800 49.275 69 34 1 9 76 2 70 5.26e-15 72.8
MS.gene71581.t1 AT2G14210 46.377 69 36 1 9 76 2 70 5.92e-15 72.0
MS.gene71581.t1 AT5G20240 47.143 70 35 1 9 76 2 71 7.30e-15 71.2
MS.gene71581.t1 AT2G14210 46.377 69 36 1 9 76 2 70 8.05e-15 71.6
MS.gene71581.t1 AT1G24260 29.600 250 136 10 9 234 2 235 1.65e-14 71.2
MS.gene71581.t1 AT5G23260 43.299 97 47 3 2 90 9 105 1.72e-14 71.2
MS.gene71581.t1 AT5G23260 43.299 97 47 3 2 90 9 105 1.76e-14 71.2
MS.gene71581.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.83e-14 69.7
MS.gene71581.t1 AT3G02310 47.826 69 35 1 9 76 2 70 2.05e-14 70.1
MS.gene71581.t1 AT3G58780 52.459 61 29 0 6 66 14 74 2.14e-14 70.5
MS.gene71581.t1 AT3G58780 52.459 61 29 0 6 66 14 74 2.90e-14 70.9
MS.gene71581.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.95e-14 69.3
MS.gene71581.t1 AT5G23260 44.318 88 43 2 9 90 2 89 3.30e-14 70.1
MS.gene71581.t1 AT5G65050 46.377 69 36 1 9 76 2 70 3.38e-14 69.3
MS.gene71581.t1 AT5G23260 44.318 88 43 2 9 90 2 89 3.50e-14 70.1
MS.gene71581.t1 AT1G47760 31.333 150 82 5 9 155 2 133 3.59e-14 68.9
MS.gene71581.t1 AT5G65050 46.377 69 36 1 9 76 2 70 3.68e-14 68.9
MS.gene71581.t1 AT3G02310 47.826 69 35 1 9 76 2 70 4.94e-14 69.7
MS.gene71581.t1 AT2G03710 47.143 70 35 2 9 76 2 71 5.37e-14 68.6
MS.gene71581.t1 AT5G65060 46.377 69 36 1 9 76 2 70 5.79e-14 68.6
MS.gene71581.t1 AT5G65060 46.377 69 36 1 9 76 2 70 6.06e-14 68.6
MS.gene71581.t1 AT5G65060 46.377 69 36 1 9 76 2 70 7.10e-14 68.6
MS.gene71581.t1 AT1G24260 29.365 252 133 11 9 234 2 234 8.22e-14 69.3
MS.gene71581.t1 AT2G03710 47.143 70 35 2 9 76 2 71 1.11e-13 68.9
MS.gene71581.t1 AT2G03710 45.714 70 36 1 9 76 2 71 1.12e-13 68.9
MS.gene71581.t1 AT1G71692 44.286 70 38 1 9 77 2 71 2.30e-13 67.4
MS.gene71581.t1 AT5G65070 42.029 69 39 1 9 76 2 70 2.92e-13 65.5
MS.gene71581.t1 AT5G65070 42.029 69 39 1 9 76 2 70 5.74e-13 65.9
MS.gene71581.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.10e-12 65.9
MS.gene71581.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.16e-12 65.5
MS.gene71581.t1 AT1G18750 38.667 75 44 1 9 81 2 76 5.12e-12 65.1
MS.gene71581.t1 AT1G18750 38.667 75 44 1 9 81 2 76 5.76e-12 65.1
MS.gene71581.t1 AT5G65070 47.368 57 30 0 9 65 2 58 6.05e-12 63.5
MS.gene71581.t1 AT1G18750 38.667 75 44 1 9 81 2 76 6.15e-12 64.7
MS.gene71581.t1 AT1G46408 36.134 119 67 4 10 119 5 123 1.15e-11 63.2
MS.gene71581.t1 AT1G69540 33.636 110 65 3 9 117 2 104 1.27e-11 63.9
MS.gene71581.t1 AT1G69540 33.636 110 65 3 9 117 2 104 1.63e-11 63.5
MS.gene71581.t1 AT5G65080 42.667 75 40 2 5 76 3 77 2.82e-11 61.2
MS.gene71581.t1 AT4G37435 40.278 72 42 1 9 79 2 73 3.03e-11 60.8
MS.gene71581.t1 AT2G03060 28.070 171 106 7 9 164 2 170 3.68e-11 62.4
MS.gene71581.t1 AT2G03060 28.070 171 106 7 9 164 2 170 3.68e-11 62.4
MS.gene71581.t1 AT2G03060 28.070 171 106 7 9 164 2 170 3.68e-11 62.4
MS.gene71581.t1 AT2G03060 28.070 171 106 7 9 164 2 170 4.05e-11 62.4
MS.gene71581.t1 AT2G26320 40.000 70 40 1 9 76 18 87 4.81e-11 58.5
MS.gene71581.t1 AT5G27130 40.000 85 47 2 2 82 6 90 7.10e-11 61.2
MS.gene71581.t1 AT5G65080 43.548 62 35 0 1 62 1 62 7.19e-11 60.1

Find 63 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTTGGTTTCAACAATA+TGG 0.234944 1.4:-81728766 MS.gene71581:CDS
AGGCGACCGAAACTCAATTT+TGG 0.290261 1.4:-81729037 MS.gene71581:CDS
CTTGTGGAGGATTTGGTTGA+TGG 0.298622 1.4:+81728838 None:intergenic
ATCTGAGCTTGTGGAGGATT+TGG 0.314155 1.4:+81728831 None:intergenic
TGGTGGGCTGGTCCCGTTGA+TGG 0.316276 1.4:-81729017 MS.gene71581:CDS
ATTGCATGGTACCATTGTTT+TGG 0.328016 1.4:+81729174 None:intergenic
TTGTTTGGTTTCAACAATAT+GGG 0.345119 1.4:-81728765 MS.gene71581:CDS
TGAATTATTCAAGAAGGGTT+TGG 0.345983 1.4:-81728976 MS.gene71581:CDS
TGCTGATAGGCTTGTAATCC+AGG 0.383576 1.4:-81728925 MS.gene71581:CDS
ATGTTGCAACCTCATTTGTT+TGG 0.384083 1.4:-81728780 MS.gene71581:CDS
TTGTTGCTCATCATGCTGAT+AGG 0.403840 1.4:-81728938 MS.gene71581:CDS
TCTTCTCGATGTCCAGTAGT+TGG 0.408924 1.4:+81729090 None:intergenic
GTCCCGTTGATGGGATGAAT+AGG 0.432754 1.4:-81729007 MS.gene71581:CDS
CTTCTTGAATAATTCAAGTT+GGG 0.438577 1.4:+81728983 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.442152 1.4:+81729221 None:intergenic
CACTTGCAAGTTGCTTTCGT+TGG 0.444023 1.4:+81729364 None:intergenic
GGTGGGCTGGTCCCGTTGAT+GGG 0.452333 1.4:-81729016 MS.gene71581:CDS
TCCCGTTGATGGGATGAATA+GGG 0.453040 1.4:-81729006 MS.gene71581:CDS
CCTTCTTGAATAATTCAAGT+TGG 0.457580 1.4:+81728982 None:intergenic
AGCCCACCAAAATTGAGTTT+CGG 0.472023 1.4:+81729031 None:intergenic
GCCCTATTCATCCCATCAAC+GGG 0.481029 1.4:+81729005 None:intergenic
GTGGAGGATTTGGTTGATGG+TGG 0.481407 1.4:+81728841 None:intergenic
AACAAATGAGGTTGCAACAT+AGG 0.496587 1.4:+81728783 None:intergenic
AGTATTGAGCTCGCGCACAT+TGG 0.504609 1.4:+81729130 None:intergenic
CAACTTGAATTATTCAAGAA+GGG 0.506151 1.4:-81728981 MS.gene71581:CDS
ATCTATGACCGTATCAACAT+TGG 0.506195 1.4:+81729220 None:intergenic
CCAACTTGAATTATTCAAGA+AGG 0.511852 1.4:-81728982 MS.gene71581:CDS
ACAGAGGGTGCAAAGCTCAC+TGG 0.525840 1.4:+81729304 None:intergenic
ACAAATGAGGTTGCAACATA+GGG 0.527904 1.4:+81728784 None:intergenic
GGCCCTATTCATCCCATCAA+CGG 0.536262 1.4:+81729004 None:intergenic
GACTCAGATCAACCAACTAC+TGG 0.537057 1.4:-81729102 MS.gene71581:CDS
AGAGCTGAGCGACTTGCGCA+AGG 0.537990 1.4:-81729057 MS.gene71581:CDS
GGGCTCGGATCAAAAGAATC+CGG 0.538178 1.4:+81728719 None:intergenic
TGGCCACCCCAATGTTGATA+CGG 0.542985 1.4:-81729228 MS.gene71581:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 1.4:-81729340 MS.gene71581:CDS
TGTTTGGTTTCAACAATATG+GGG 0.556331 1.4:-81728764 MS.gene71581:CDS
TTGTTGAAACCAAACAAATG+AGG 0.558095 1.4:+81728771 None:intergenic
GGAGGTGGATATGGACCCTC+CGG 0.560213 1.4:-81728738 MS.gene71581:CDS
CTTCAACCATGTCGAGTGGA+AGG 0.562158 1.4:-81729427 None:intergenic
AACGAAAATACCTTCTCCCC+AGG 0.564049 1.4:+81729251 None:intergenic
GCTGGAAACATCTGAGCTTG+TGG 0.568464 1.4:+81728822 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 1.4:-81729341 MS.gene71581:CDS
AGTGAGCTTTGCACCCTCTG+TGG 0.587031 1.4:-81729302 MS.gene71581:CDS
GGATTTGGTTGATGGTGGAG+AGG 0.589428 1.4:+81728846 None:intergenic
AGCAACATCTGCACCACAGA+GGG 0.595144 1.4:+81729289 None:intergenic
TGCGCTTCAACCATGTCGAG+TGG 0.601726 1.4:-81729431 None:intergenic
TGGTTTGAGTAGGAGCACCC+TGG 0.605264 1.4:+81728907 None:intergenic
GTTTGGTTTCAACAATATGG+GGG 0.607401 1.4:-81728763 MS.gene71581:CDS
CGAGTCCCGCCCCAAAACAA+TGG 0.608244 1.4:-81729185 MS.gene71581:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 1.4:+81729327 None:intergenic
ATGGTGGAGAGGAATGTTCG+AGG 0.612109 1.4:+81728857 None:intergenic
GCTGATAGGCTTGTAATCCA+GGG 0.636302 1.4:-81728924 MS.gene71581:CDS
TTTGGTTTCAACAATATGGG+GGG 0.638238 1.4:-81728762 MS.gene71581:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 1.4:-81729165 MS.gene71581:CDS
TGGTGGAGAGGAATGTTCGA+GGG 0.641320 1.4:+81728858 None:intergenic
GGAAACATCTGAGCTTGTGG+AGG 0.645017 1.4:+81728825 None:intergenic
CTCGGATCAAAAGAATCCGG+AGG 0.655674 1.4:+81728722 None:intergenic
TGACCGTATCAACATTGGGG+TGG 0.665619 1.4:+81729225 None:intergenic
TCGGATCAAAAGAATCCGGA+GGG 0.678771 1.4:+81728723 None:intergenic
ATGAGCCTCAATGAATTGCA+TGG 0.679678 1.4:+81729160 None:intergenic
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 1.4:-81729416 MS.gene71581:CDS
CTATGACCGTATCAACATTG+GGG 0.709949 1.4:+81729222 None:intergenic
GAGCAACATCTGCACCACAG+AGG 0.729838 1.4:+81729288 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG + chr1.4:81728760-81728779 None:intergenic 20.0%
! CAACTTGAATTATTCAAGAA+GGG - chr1.4:81729166-81729185 MS.gene71581:CDS 25.0%
!! CTTCTTGAATAATTCAAGTT+GGG + chr1.4:81729167-81729186 None:intergenic 25.0%
!! TTGTTTGGTTTCAACAATAT+GGG - chr1.4:81729382-81729401 MS.gene71581:CDS 25.0%
!! TTTGTTTGGTTTCAACAATA+TGG - chr1.4:81729381-81729400 MS.gene71581:CDS 25.0%
!!! ATTCAGTTTTTTGTTGGAAA+CGG - chr1.4:81729262-81729281 MS.gene71581:CDS 25.0%
AAAAACTGAATGGTTTGAGT+AGG + chr1.4:81729253-81729272 None:intergenic 30.0%
CCAACTTGAATTATTCAAGA+AGG - chr1.4:81729165-81729184 MS.gene71581:CDS 30.0%
CCTTCTTGAATAATTCAAGT+TGG + chr1.4:81729168-81729187 None:intergenic 30.0%
GTTTCCAACAAAAAACTGAA+TGG + chr1.4:81729263-81729282 None:intergenic 30.0%
TGAATTATTCAAGAAGGGTT+TGG - chr1.4:81729171-81729190 MS.gene71581:CDS 30.0%
TTGTTGAAACCAAACAAATG+AGG + chr1.4:81729379-81729398 None:intergenic 30.0%
! TGTTTGGTTTCAACAATATG+GGG - chr1.4:81729383-81729402 MS.gene71581:CDS 30.0%
!!! CAAACCATTCAGTTTTTTGT+TGG - chr1.4:81729256-81729275 MS.gene71581:CDS 30.0%
AACAAATGAGGTTGCAACAT+AGG + chr1.4:81729367-81729386 None:intergenic 35.0%
ACAAATGAGGTTGCAACATA+GGG + chr1.4:81729366-81729385 None:intergenic 35.0%
ATCTATGACCGTATCAACAT+TGG + chr1.4:81728930-81728949 None:intergenic 35.0%
ATGTTGCAACCTCATTTGTT+TGG - chr1.4:81729367-81729386 MS.gene71581:CDS 35.0%
TCTATGACCGTATCAACATT+GGG + chr1.4:81728929-81728948 None:intergenic 35.0%
! ATTGCATGGTACCATTGTTT+TGG + chr1.4:81728976-81728995 None:intergenic 35.0%
! GTTTGGTTTCAACAATATGG+GGG - chr1.4:81729384-81729403 MS.gene71581:CDS 35.0%
! TTGCATGGTACCATTGTTTT+GGG + chr1.4:81728975-81728994 None:intergenic 35.0%
! TTTGGTTTCAACAATATGGG+GGG - chr1.4:81729385-81729404 MS.gene71581:CDS 35.0%
AGCCCACCAAAATTGAGTTT+CGG + chr1.4:81729119-81729138 None:intergenic 40.0%
ATGAGCCTCAATGAATTGCA+TGG + chr1.4:81728990-81729009 None:intergenic 40.0%
CTATGACCGTATCAACATTG+GGG + chr1.4:81728928-81728947 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG - chr1.4:81728982-81729001 MS.gene71581:CDS 40.0%
TTGTTGCTCATCATGCTGAT+AGG - chr1.4:81729209-81729228 MS.gene71581:CDS 40.0%
!! GACCGAAACTCAATTTTGGT+GGG - chr1.4:81729114-81729133 MS.gene71581:CDS 40.0%
!! TGCATGGTACCATTGTTTTG+GGG + chr1.4:81728974-81728993 None:intergenic 40.0%
AACGAAAATACCTTCTCCCC+AGG + chr1.4:81728899-81728918 None:intergenic 45.0%
ATCTGAGCTTGTGGAGGATT+TGG + chr1.4:81729319-81729338 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr1.4:81728823-81728842 None:intergenic 45.0%
GACTCAGATCAACCAACTAC+TGG - chr1.4:81729045-81729064 MS.gene71581:CDS 45.0%
GCTGATAGGCTTGTAATCCA+GGG - chr1.4:81729223-81729242 MS.gene71581:CDS 45.0%
TCTTCTCGATGTCCAGTAGT+TGG + chr1.4:81729060-81729079 None:intergenic 45.0%
TGCTGATAGGCTTGTAATCC+AGG - chr1.4:81729222-81729241 MS.gene71581:CDS 45.0%
! AGGCGACCGAAACTCAATTT+TGG - chr1.4:81729110-81729129 MS.gene71581:CDS 45.0%
! CACTTGCAAGTTGCTTTCGT+TGG + chr1.4:81728786-81728805 None:intergenic 45.0%
! CGACCGAAACTCAATTTTGG+TGG - chr1.4:81729113-81729132 MS.gene71581:CDS 45.0%
! CTTGTGGAGGATTTGGTTGA+TGG + chr1.4:81729312-81729331 None:intergenic 45.0%
! TCCCGTTGATGGGATGAATA+GGG - chr1.4:81729141-81729160 MS.gene71581:CDS 45.0%
! TCTCAATCTTTTGGCGACCT+CGG + chr1.4:81728751-81728770 None:intergenic 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG - chr1.4:81728879-81728898 MS.gene71581:CDS 45.0%
!! GAAACTCAATTTTGGTGGGC+TGG - chr1.4:81729118-81729137 MS.gene71581:CDS 45.0%
!! GGGTTCTGAAAAAACTGTGC+TGG + chr1.4:81729346-81729365 None:intergenic 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG - chr1.4:81728880-81728899 MS.gene71581:CDS 45.0%
!!! ATGGTACCATTGTTTTGGGG+CGG + chr1.4:81728971-81728990 None:intergenic 45.0%
!!! GGGGAGAAGGTATTTTCGTT+TGG - chr1.4:81728899-81728918 MS.gene71581:CDS 45.0%
AGCAACATCTGCACCACAGA+GGG + chr1.4:81728861-81728880 None:intergenic 50.0%
GCCCTATTCATCCCATCAAC+GGG + chr1.4:81729145-81729164 None:intergenic 50.0%
GCTGGAAACATCTGAGCTTG+TGG + chr1.4:81729328-81729347 None:intergenic 50.0%
GGAAACATCTGAGCTTGTGG+AGG + chr1.4:81729325-81729344 None:intergenic 50.0%
GGCCCTATTCATCCCATCAA+CGG + chr1.4:81729146-81729165 None:intergenic 50.0%
GGTTTCAACAATATGGGGGG+AGG - chr1.4:81729388-81729407 MS.gene71581:CDS 50.0%
TGACCGTATCAACATTGGGG+TGG + chr1.4:81728925-81728944 None:intergenic 50.0%
TGGCCACCCCAATGTTGATA+CGG - chr1.4:81728919-81728938 MS.gene71581:CDS 50.0%
TGGTGGAGAGGAATGTTCGA+GGG + chr1.4:81729292-81729311 None:intergenic 50.0%
TTCAACAATATGGGGGGAGG+AGG - chr1.4:81729391-81729410 MS.gene71581:CDS 50.0%
! AGTATTGAGCTCGCGCACAT+TGG + chr1.4:81729020-81729039 None:intergenic 50.0%
! ATGGTGGAGAGGAATGTTCG+AGG + chr1.4:81729293-81729312 None:intergenic 50.0%
! GTCCCGTTGATGGGATGAAT+AGG - chr1.4:81729140-81729159 MS.gene71581:CDS 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG - chr1.4:81728886-81728905 MS.gene71581:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG - chr1.4:81728878-81728897 MS.gene71581:CDS 50.0%
!! GGATTTGGTTGATGGTGGAG+AGG + chr1.4:81729304-81729323 None:intergenic 50.0%
!! GTGGAGGATTTGGTTGATGG+TGG + chr1.4:81729309-81729328 None:intergenic 50.0%
!!! TGGTACCATTGTTTTGGGGC+GGG + chr1.4:81728970-81728989 None:intergenic 50.0%
AACAATATGGGGGGAGGAGG+TGG - chr1.4:81729394-81729413 MS.gene71581:CDS 55.0%
AGTGAGCTTTGCACCCTCTG+TGG - chr1.4:81728845-81728864 MS.gene71581:CDS 55.0%
GAGCAACATCTGCACCACAG+AGG + chr1.4:81728862-81728881 None:intergenic 55.0%
TCGAGTGGAAGGAAAAGCCG+AGG - chr1.4:81728731-81728750 MS.gene71581:CDS 55.0%
! ACAGAGGGTGCAAAGCTCAC+TGG + chr1.4:81728846-81728865 None:intergenic 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr1.4:81728806-81728825 MS.gene71581:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr1.4:81728807-81728826 MS.gene71581:CDS 55.0%
!! TGGTTTGAGTAGGAGCACCC+TGG + chr1.4:81729243-81729262 None:intergenic 55.0%
AGAGCTGAGCGACTTGCGCA+AGG - chr1.4:81729090-81729109 MS.gene71581:CDS 60.0%
ATGGGGGGAGGAGGTGGATA+TGG - chr1.4:81729400-81729419 MS.gene71581:CDS 60.0%
CGAGTCCCGCCCCAAAACAA+TGG - chr1.4:81728962-81728981 MS.gene71581:CDS 60.0%
GGAGGTGGATATGGACCCTC+CGG - chr1.4:81729409-81729428 MS.gene71581:CDS 60.0%
!! GGTGGGCTGGTCCCGTTGAT+GGG - chr1.4:81729131-81729150 MS.gene71581:CDS 65.0%
!! TGGTGGGCTGGTCCCGTTGA+TGG - chr1.4:81729130-81729149 MS.gene71581:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 81728728 81729441 81728728 ID=MS.gene71581
chr1.4 mRNA 81728728 81729441 81728728 ID=MS.gene71581.t1;Parent=MS.gene71581
chr1.4 exon 81728728 81729441 81728728 ID=MS.gene71581.t1.exon1;Parent=MS.gene71581.t1
chr1.4 CDS 81728728 81729441 81728728 ID=cds.MS.gene71581.t1;Parent=MS.gene71581.t1
Gene Sequence

>MS.gene71581

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGACCAACGAAAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCGTTTGGCCACCCCAATGTTGATACGGTCATAGATCGTTATCTCTCTCGAGTCCCGCCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCATCGCAGCGCCAATGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAACTACTGGACATCGAGAAGAAACGTGCTGAAGAGCTGAGCGACTTGCGCAAGGCGACCGAAACTCAATTTTGGTGGGCTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTATTCAAGAAGGGTTTGGATGAGCTTAAGAAACTTGTTGCTCATCATGCTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCATTCAGTTTTTTGTTGGAAACGGTTCACCCTCGAACATTCCTCTCCACCATCAACCAAATCCTCCACAAGCTCAGATGTTTCCAGCACAGTTTTTTCAGAACCCTATGTTGCAACCTCATTTGTTTGGTTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA
Protein sequence

>MS.gene71581.t1

MSSGRKSRGRQKIEMKKMTNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDIEKKRAEELSDLRKATETQFWWAGPVDGMNRAQLELFKKGLDELKKLVAHHADRLVIQGAPTQTIQFFVGNGSPSNIPLHHQPNPPQAQMFPAQFFQNPMLQPHLFGFNNMGGGGGYGPSGFF