AlfalfaGEDB | MS.gene71581

M. sativa cultivar XinJiangDaYe / MS.gene71581

KEGG: -
GO: GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0044212 GO:0045893 GO:0045935 GO:0045944 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71581.t1	XP_013469942.1	92.8	237	17	0	1	237	1	237	6.20E-122	446.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71581.t1	Q9FKK2	55.9	186	75	3	5	187	3	184	1.0e-48	194.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71581.t1	A0A072W118	92.8	237	17	0	1	237	1	237	4.5e-122	446.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene71581.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene71581	MS.gene068836	PPI
MS.gene71581	MS.gene22094	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71581.t1	MTR_8g043650	89.451	237	25	0	1	237	1	237	8.73e-159	439
MS.gene71581.t1	MTR_1g105910	90.295	237	23	0	1	237	1	237	7.43e-154	427
MS.gene71581.t1	MTR_1g105920	92.237	219	17	0	1	219	1	219	4.20e-152	422
MS.gene71581.t1	MTR_2g030740	91.139	237	21	0	1	237	1	237	2.40e-151	421
MS.gene71581.t1	MTR_3g052920	87.215	219	28	0	1	219	1	219	4.22e-144	402
MS.gene71581.t1	MTR_1g012570	88.186	237	28	0	1	237	1	237	1.00e-143	401
MS.gene71581.t1	MTR_1g105905	82.273	220	39	0	18	237	1	220	2.28e-134	377
MS.gene71581.t1	MTR_3g052870	80.365	219	24	1	1	219	1	200	6.32e-125	353
MS.gene71581.t1	MTR_0121s0080	72.152	237	65	1	1	237	1	236	9.58e-121	343
MS.gene71581.t1	MTR_5g055100	67.932	237	76	0	1	237	1	237	2.18e-120	342

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71581.t1	AT5G60440	55.914	186	75	3	5	187	3	184	5.68e-64	201
MS.gene71581.t1	AT2G24840	49.390	164	72	4	6	163	60	218	2.96e-45	152
MS.gene71581.t1	AT1G01530	42.632	190	101	3	4	192	2	184	1.72e-42	144
MS.gene71581.t1	AT1G65360	40.088	227	121	6	5	225	3	220	2.94e-42	143
MS.gene71581.t1	AT4G36590	46.341	164	78	4	5	160	3	164	2.27e-39	136
MS.gene71581.t1	AT2G34440	45.299	117	55	2	9	121	2	113	8.78e-27	102
MS.gene71581.t1	AT3G04100	32.099	162	106	3	2	159	7	168	1.36e-25	99.8
MS.gene71581.t1	AT3G66656	43.697	119	63	1	9	123	2	120	1.54e-25	99.0
MS.gene71581.t1	AT1G72350	35.526	152	65	4	9	160	43	161	2.68e-22	91.7
MS.gene71581.t1	AT1G28460	29.586	169	115	2	5	169	4	172	2.20e-20	85.5

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Find 63 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAATGAGGTTGCAACAT+AGG	0.496587	1.4:+81728783	None:intergenic
AACGAAAATACCTTCTCCCC+AGG	0.564049	1.4:+81729251	None:intergenic
ACAAATGAGGTTGCAACATA+GGG	0.527904	1.4:+81728784	None:intergenic
ACAGAGGGTGCAAAGCTCAC+TGG	0.525840	1.4:+81729304	None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG	0.571963	1.4:-81729341	MS.gene71581:CDS
AGAGCTGAGCGACTTGCGCA+AGG	0.537990	1.4:-81729057	MS.gene71581:CDS
AGCAACATCTGCACCACAGA+GGG	0.595144	1.4:+81729289	None:intergenic
AGCCCACCAAAATTGAGTTT+CGG	0.472023	1.4:+81729031	None:intergenic
AGGCGACCGAAACTCAATTT+TGG	0.290261	1.4:-81729037	MS.gene71581:CDS
AGTATTGAGCTCGCGCACAT+TGG	0.504609	1.4:+81729130	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACTGAATGGTTTGAGT+AGG	+	chr1.4:81729253-81729272	None:intergenic	30.0%
CCAACTTGAATTATTCAAGA+AGG	-	chr1.4:81729165-81729184	MS.gene71581:CDS	30.0%
CCTTCTTGAATAATTCAAGT+TGG	+	chr1.4:81729168-81729187	None:intergenic	30.0%
GTTTCCAACAAAAAACTGAA+TGG	+	chr1.4:81729263-81729282	None:intergenic	30.0%
TGAATTATTCAAGAAGGGTT+TGG	-	chr1.4:81729171-81729190	MS.gene71581:CDS	30.0%
TTGTTGAAACCAAACAAATG+AGG	+	chr1.4:81729379-81729398	None:intergenic	30.0%
AACAAATGAGGTTGCAACAT+AGG	+	chr1.4:81729367-81729386	None:intergenic	35.0%
ACAAATGAGGTTGCAACATA+GGG	+	chr1.4:81729366-81729385	None:intergenic	35.0%
ATCTATGACCGTATCAACAT+TGG	+	chr1.4:81728930-81728949	None:intergenic	35.0%
ATGTTGCAACCTCATTTGTT+TGG	-	chr1.4:81729367-81729386	MS.gene71581:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	81728728	81729441	81728728	ID=MS.gene71581
chr1.4	mRNA	81728728	81729441	81728728	ID=MS.gene71581.t1;Parent=MS.gene71581
chr1.4	exon	81728728	81729441	81728728	ID=MS.gene71581.t1.exon1;Parent=MS.gene71581.t1
chr1.4	CDS	81728728	81729441	81728728	ID=cds.MS.gene71581.t1;Parent=MS.gene71581.t1

Gene Sequence

>MS.gene71581

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGACCAACGAAAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCGTTTGGCCACCCCAATGTTGATACGGTCATAGATCGTTATCTCTCTCGAGTCCCGCCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCATCGCAGCGCCAATGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAACTACTGGACATCGAGAAGAAACGTGCTGAAGAGCTGAGCGACTTGCGCAAGGCGACCGAAACTCAATTTTGGTGGGCTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTATTCAAGAAGGGTTTGGATGAGCTTAAGAAACTTGTTGCTCATCATGCTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCATTCAGTTTTTTGTTGGAAACGGTTCACCCTCGAACATTCCTCTCCACCATCAACCAAATCCTCCACAAGCTCAGATGTTTCCAGCACAGTTTTTTCAGAACCCTATGTTGCAACCTCATTTGTTTGGTTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA

Protein sequence

>MS.gene71581.t1

MSSGRKSRGRQKIEMKKMTNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDIEKKRAEELSDLRKATETQFWWAGPVDGMNRAQLELFKKGLDELKKLVAHHADRLVIQGAPTQTIQFFVGNGSPSNIPLHHQPNPPQAQMFPAQFFQNPMLQPHLFGFNNMGGGGGYGPSGFF