AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71586

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71586.t1 MTR_1g105965 97.747 577 11 1 1 577 1 575 0.0 1157
MS.gene71586.t1 MTR_1g105965 96.447 394 12 1 1 394 1 392 0.0 781
MS.gene71586.t1 MTR_1g105965 96.440 309 9 1 1 309 1 307 0.0 613
MS.gene71586.t1 MTR_1g076540 57.255 510 204 4 72 576 69 569 0.0 604
MS.gene71586.t1 MTR_1g099360 41.684 487 265 10 92 576 103 572 6.42e-113 348
MS.gene71586.t1 MTR_6g034195 40.779 488 272 8 69 555 82 553 9.00e-112 345
MS.gene71586.t1 MTR_5g014140 40.984 488 265 9 93 576 78 546 4.13e-108 335
MS.gene71586.t1 MTR_5g014140 46.440 323 162 5 93 414 78 390 8.50e-85 271
MS.gene71586.t1 MTR_6g004020 32.377 488 292 12 93 555 21 495 6.06e-74 244
MS.gene71586.t1 MTR_4g083340 31.568 491 298 11 93 558 8 485 2.32e-69 232
MS.gene71586.t1 MTR_7g100760 31.772 491 297 12 93 558 11 488 7.61e-68 228
MS.gene71586.t1 MTR_4g083330 31.301 492 271 13 93 558 11 461 1.36e-62 214
MS.gene71586.t1 MTR_7g103420 25.502 498 325 12 94 558 30 514 8.40e-45 166
MS.gene71586.t1 MTR_1g061630 26.371 474 300 11 94 536 30 485 3.21e-44 165
MS.gene71586.t1 MTR_1g091040 26.157 497 322 12 94 558 30 513 8.69e-44 164
MS.gene71586.t1 MTR_7g103420 25.195 512 324 12 94 558 30 529 3.62e-43 162
MS.gene71586.t1 MTR_1g061630 25.996 477 282 12 94 536 30 469 2.42e-41 157
MS.gene71586.t1 MTR_7g103420 25.342 438 281 12 154 558 1 425 1.66e-35 139
MS.gene71586.t1 MTR_1g091040 28.527 319 199 8 263 558 68 380 2.02e-32 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71586.t1 AT3G22960 59.208 505 194 4 75 576 100 595 0.0 620
MS.gene71586.t1 AT5G52920 40.123 486 274 7 92 576 110 579 3.41e-114 352
MS.gene71586.t1 AT1G32440 42.283 473 250 9 92 560 99 552 8.33e-108 335
MS.gene71586.t1 AT5G08570 31.008 516 309 14 65 555 2 495 2.03e-72 241
MS.gene71586.t1 AT5G08570 31.008 516 309 14 65 555 2 495 2.03e-72 241
MS.gene71586.t1 AT5G08570 31.008 516 309 14 65 555 2 495 2.03e-72 241
MS.gene71586.t1 AT5G63680 33.197 488 288 15 93 555 21 495 5.05e-72 239
MS.gene71586.t1 AT5G63680 33.197 488 288 15 93 555 21 495 5.05e-72 239
MS.gene71586.t1 AT5G63680 33.197 488 288 15 93 555 21 495 5.05e-72 239
MS.gene71586.t1 AT3G25960 31.950 482 299 12 93 558 17 485 1.85e-69 233
MS.gene71586.t1 AT3G55650 30.707 495 301 12 93 558 17 498 3.38e-68 229
MS.gene71586.t1 AT3G04050 30.382 497 300 12 93 558 17 498 5.36e-67 226
MS.gene71586.t1 AT5G56350 32.582 488 291 13 93 555 9 483 1.15e-66 225
MS.gene71586.t1 AT4G26390 31.417 487 298 12 93 555 8 482 5.00e-64 218
MS.gene71586.t1 AT3G55810 29.574 470 278 12 93 556 17 439 1.64e-53 190
MS.gene71586.t1 AT3G52990 25.502 498 325 12 94 558 30 514 8.38e-41 155
MS.gene71586.t1 AT2G36580 24.444 495 334 11 94 558 30 514 4.60e-38 147
MS.gene71586.t1 AT3G52990 24.684 474 311 12 118 558 1 461 1.40e-35 139
MS.gene71586.t1 AT3G49160 36.242 149 86 4 266 408 446 591 3.98e-19 91.7
MS.gene71586.t1 AT3G49160 36.242 149 86 4 266 408 534 679 4.63e-19 91.7

Find 135 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGAGCCAAATGTAGTTTC+TGG 0.243805 1.4:+81790203 MS.gene71586:CDS
AATCATCGTGTTTCAAATCT+TGG 0.260002 1.4:+81788848 MS.gene71586:CDS
GGGAAGTTTGGGTTTGGATA+TGG 0.265237 1.4:+81788973 MS.gene71586:CDS
TGTTGCATTGGAGGGAAGTT+TGG 0.281638 1.4:+81788961 MS.gene71586:CDS
AATGGCATCGTGATGTTATT+AGG 0.306322 1.4:+81789155 MS.gene71586:CDS
GGTTTCAGAAGGAGAATTAA+TGG 0.312589 1.4:+81788994 MS.gene71586:CDS
GCAATGATGCTCCAAGTTTA+TGG 0.326757 1.4:-81791647 None:intergenic
TGGTCCTGCTTGTAGTTCAT+TGG 0.339798 1.4:+81789063 MS.gene71586:CDS
TGAAGGGTTTCCAGATATAC+TGG 0.344249 1.4:-81788816 None:intergenic
GTGAGGAAATCCAGTATATC+TGG 0.344738 1.4:+81788806 MS.gene71586:CDS
GTTGCATTGGAGGGAAGTTT+GGG 0.365799 1.4:+81788962 MS.gene71586:CDS
CAGATTCATGTTGTTGATCA+TGG 0.377261 1.4:+81789244 MS.gene71586:CDS
AATTTCAGGAAGATTCAATA+TGG 0.381587 1.4:+81789880 MS.gene71586:intron
GAGTCAGCTATTGGTTCATT+TGG 0.382199 1.4:+81791537 MS.gene71586:CDS
ATGCAACTGTGCTGTTGAAA+TGG 0.385400 1.4:+81791692 MS.gene71586:CDS
CAGCCATGCATTCTAGATAA+TGG 0.388811 1.4:-81792822 None:intergenic
ATCTCTCCAGAAACTACATT+TGG 0.404637 1.4:-81790209 None:intergenic
TGAGCAAATTCCTACAGTTC+AGG 0.405326 1.4:+81791221 MS.gene71586:CDS
CAACCATGCTGACTCTGTTA+AGG 0.410845 1.4:+81790894 MS.gene71586:CDS
TAAGAAGCTTAATGACGAAA+AGG 0.411767 1.4:+81789183 MS.gene71586:CDS
TATTTCCTCCAGGTTATGAA+TGG 0.413481 1.4:-81791139 None:intergenic
GGAGAGATGGAAAGCTTGTC+AGG 0.415630 1.4:+81790224 MS.gene71586:CDS
TTGTCTGGTGAGTCAGCTAT+TGG 0.419272 1.4:+81791528 MS.gene71586:CDS
TGGTCTTAACCTGAATTGAT+TGG 0.425014 1.4:-81792802 None:intergenic
AAAGCAAAGATGGGAGGATC+TGG 0.425744 1.4:-81792581 None:intergenic
GGTGATGAAATTGTTATTGA+TGG 0.426567 1.4:+81790100 MS.gene71586:CDS
TTTCAGATCCATAAAAGTAT+TGG 0.431591 1.4:+81791095 MS.gene71586:intron
TCCTGCTTGTAGTTCATTGG+AGG 0.431662 1.4:+81789066 MS.gene71586:CDS
AACAGTGGAAGTGGGTGGTT+TGG 0.432524 1.4:+81788907 MS.gene71586:CDS
ATTGGAGGGAAGTTTGGGTT+TGG 0.433837 1.4:+81788967 MS.gene71586:CDS
CCAGAAACTACATTTGGCTC+TGG 0.435258 1.4:-81790203 None:intergenic
ATCTTTGTTTACACAAAGCA+TGG 0.442882 1.4:+81792527 MS.gene71586:CDS
CTTCTCAATCACCATAAACT+TGG 0.443356 1.4:+81791636 MS.gene71586:CDS
AATGGCTCTGAATTTGCAAT+GGG 0.444315 1.4:+81792625 MS.gene71586:CDS
ATTTGCTCAGTGATGCAATC+TGG 0.453282 1.4:-81791669 None:intergenic
AATGGCTCTCCAATCAATTC+AGG 0.456525 1.4:+81792793 MS.gene71586:CDS
GCGGATGCTTTGATGTTGTC+TGG 0.457261 1.4:+81791513 MS.gene71586:CDS
ATCGTCAGTGAAAGCAAAGA+TGG 0.468784 1.4:-81792591 None:intergenic
GATTGGGCTGATATAAACTT+TGG 0.469823 1.4:+81790832 MS.gene71586:CDS
GGCATCCACACCAAGTTTGT+TGG 0.470716 1.4:-81792504 None:intergenic
ATTGGAGGATCTAGAGAAGT+TGG 0.472176 1.4:+81789081 MS.gene71586:CDS
GTTCAGCTTATGAAATCTAA+AGG 0.476188 1.4:+81792707 MS.gene71586:CDS
GGTTAGAGCAACAGTGGAAG+TGG 0.479470 1.4:+81788898 MS.gene71586:CDS
GTTTCAAATCTTGGATTCAA+GGG 0.484102 1.4:+81788857 MS.gene71586:CDS
ACAGTTCAAGCAAACTATCC+AGG 0.485658 1.4:+81789942 MS.gene71586:CDS
AAGAAGCTTAATGACGAAAA+GGG 0.486607 1.4:+81789184 MS.gene71586:CDS
TGTTTCAAATCTTGGATTCA+AGG 0.486804 1.4:+81788856 MS.gene71586:CDS
TGAATTGATTGGAGAGCCAT+TGG 0.486822 1.4:-81792791 None:intergenic
CTTAGAATCCATTCATAACC+TGG 0.490324 1.4:+81791131 MS.gene71586:CDS
AGTGGAAGTGGGTGGTTTGG+AGG 0.491005 1.4:+81788910 MS.gene71586:CDS
CAAAGGAGATGTTGTTCTAG+TGG 0.496328 1.4:+81792739 MS.gene71586:CDS
ATGCTTTGTGTAAACAAAGA+TGG 0.496846 1.4:-81792525 None:intergenic
AGAAGGAGAATTAATGGTGA+AGG 0.504002 1.4:+81789000 MS.gene71586:CDS
GGATCTAGAGAAGTTGGCAT+TGG 0.506649 1.4:+81789087 MS.gene71586:CDS
TGCAACTGTGCTGTTGAAAT+GGG 0.507547 1.4:+81791693 MS.gene71586:CDS
TGATTGTCAGGTATTGAAGT+AGG 0.508370 1.4:+81790079 MS.gene71586:intron
GATTTAAAGAACTACCTCTC+TGG 0.508547 1.4:+81790916 MS.gene71586:CDS
TTACACAAAGCATGGATACA+TGG 0.512647 1.4:+81792535 MS.gene71586:CDS
TATACCTTTGTTGATAGAGT+GGG 0.513572 1.4:-81790262 None:intergenic
ACAGAAAGCACTGGCAGTGT+TGG 0.513689 1.4:+81791560 MS.gene71586:CDS
AAGCTTTCACTATTTCCTCC+AGG 0.514751 1.4:-81791149 None:intergenic
AGCTGAGAAGCTACAATCAC+TGG 0.516804 1.4:-81791279 None:intergenic
ACCTCGGCACGAGTTGGTGT+TGG 0.517994 1.4:-81791324 None:intergenic
TAGTTTGCTTGAACTGTGAA+TGG 0.518961 1.4:-81789936 None:intergenic
AAGAAGCAATGTTGCATTGG+AGG 0.519750 1.4:+81788952 MS.gene71586:CDS
AAATGTAGTTTCTGGAGAGA+TGG 0.520733 1.4:+81790211 MS.gene71586:CDS
GAAGGAGAATTAATGGTGAA+GGG 0.521643 1.4:+81789001 MS.gene71586:CDS
GATCTAGAGAAGTTGGCATT+GGG 0.523010 1.4:+81789088 MS.gene71586:CDS
CAGCATGGTTGACAAAGGAT+AGG 0.523387 1.4:-81790882 None:intergenic
GAAAGCTTCTGACGGAATCA+TGG 0.527952 1.4:+81791164 MS.gene71586:CDS
GTAGAATGGAATCATGGAGT+AGG 0.529105 1.4:+81791595 MS.gene71586:CDS
AAGAAGAAGCAATGTTGCAT+TGG 0.529627 1.4:+81788949 MS.gene71586:CDS
TGATCATGGAGCACCTTCCT+CGG 0.529749 1.4:+81789258 MS.gene71586:CDS
ATTATATCCTCCTGAACTGT+AGG 0.532477 1.4:-81791231 None:intergenic
GCCATTGGAGTTGAACGTGT+TGG 0.532724 1.4:-81792776 None:intergenic
GAATGGCTCTGAATTTGCAA+TGG 0.534437 1.4:+81792624 MS.gene71586:CDS
GGATATGACTAGCAGTAGAA+TGG 0.541987 1.4:+81791581 MS.gene71586:CDS
CTGTCTGCAGCCAACAAACT+TGG 0.543406 1.4:+81792494 MS.gene71586:intron
ATGGTAGCTCGAGGTGACCT+TGG 0.545680 1.4:+81791183 MS.gene71586:CDS
ACCTTCCTCGGTTAAAGTTG+AGG 0.547363 1.4:+81789270 MS.gene71586:CDS
GATGAAATTGTTATTGATGG+TGG 0.547715 1.4:+81790103 MS.gene71586:CDS
CAGAAACTACATTTGGCTCT+GGG 0.549518 1.4:-81790202 None:intergenic
TGTGTCATGGTACTAGAGAA+TGG 0.550320 1.4:+81789137 MS.gene71586:CDS
GGTTTGGATATGGTTTCAGA+AGG 0.551120 1.4:+81788983 MS.gene71586:CDS
TCTGATAAATCAACAAGAAG+TGG 0.551849 1.4:-81792656 None:intergenic
CTAGCAGTAGAATGGAATCA+TGG 0.554034 1.4:+81791589 MS.gene71586:CDS
TGGGAGGAATGAATGTTGCT+AGG 0.558127 1.4:+81789107 MS.gene71586:CDS
AGCATGGTTGACAAAGGATA+GGG 0.564531 1.4:-81790881 None:intergenic
CGATGATTCAAATCAAGTGA+AGG 0.566317 1.4:-81788833 None:intergenic
ACTGTAGGAATTTGCTCAAG+TGG 0.570822 1.4:-81791216 None:intergenic
CGTTGTAAGTGCATAGATGC+TGG 0.572775 1.4:+81790169 MS.gene71586:CDS
GATGATTCAAATCAAGTGAA+GGG 0.576702 1.4:-81788832 None:intergenic
TAGAATGGAATCATGGAGTA+GGG 0.577518 1.4:+81791596 MS.gene71586:CDS
ACCTCAACTTTAACCGAGGA+AGG 0.580482 1.4:-81789271 None:intergenic
AATTGTTATTGATGGTGGAA+TGG 0.581842 1.4:+81790108 MS.gene71586:CDS
ACAAAGCTTGTGTGTACTGT+TGG 0.581960 1.4:+81789043 MS.gene71586:CDS
TGAAGCAGTTCGACAGTACG+CGG 0.582389 1.4:+81791494 MS.gene71586:CDS
AGAAGCAATGTTGCATTGGA+GGG 0.585550 1.4:+81788953 MS.gene71586:CDS
TCTAAAGGATTGATCAACAA+AGG 0.587186 1.4:+81792722 MS.gene71586:CDS
TCCAACACGTTCAACTCCAA+TGG 0.588423 1.4:+81792775 MS.gene71586:CDS
AATCCTTAACAGAGTCAGCA+TGG 0.588767 1.4:-81790897 None:intergenic
ATATACCTTTGTTGATAGAG+TGG 0.588891 1.4:-81790263 None:intergenic
GGGAAAACAACATGTGGTCA+AGG 0.589917 1.4:+81788877 MS.gene71586:CDS
TTCATTTGGACAGAAAGCAC+TGG 0.597753 1.4:+81791551 MS.gene71586:CDS
TTTCCTCACAAGGCTTGAAG+CGG 0.604105 1.4:-81788792 None:intergenic
ATAAACTTTGGTATAGCTGA+GGG 0.604872 1.4:+81790844 MS.gene71586:CDS
TATAAACTTTGGTATAGCTG+AGG 0.608857 1.4:+81790843 MS.gene71586:CDS
AATGGAATCATGGAGTAGGG+AGG 0.609034 1.4:+81791599 MS.gene71586:CDS
TCGTCAGTGAAAGCAAAGAT+GGG 0.611395 1.4:-81792590 None:intergenic
TATCACCTCAACTTTAACCG+AGG 0.611486 1.4:-81789275 None:intergenic
CAAGTGGTATTTCGACTCCA+AGG 0.615969 1.4:-81791200 None:intergenic
TGCAGCCAACAAACTTGGTG+TGG 0.621182 1.4:+81792499 MS.gene71586:intron
CTAGAGAAGTTGGCATTGGG+AGG 0.622352 1.4:+81789091 MS.gene71586:CDS
TGACGATGAAAGTACTCGAA+TGG 0.623409 1.4:+81792607 MS.gene71586:CDS
CATTGTTGACTTCAAAACCA+TGG 0.623754 1.4:-81788768 None:intergenic
GCAAATTCCTACAGTTCAGG+AGG 0.625155 1.4:+81791224 MS.gene71586:CDS
TCCTCCAATGAACTACAAGC+AGG 0.625603 1.4:-81789067 None:intergenic
TCCAACACCAACTCGTGCCG+AGG 0.625829 1.4:+81791323 MS.gene71586:CDS
GTTAGAGCAACAGTGGAAGT+GGG 0.631991 1.4:+81788899 MS.gene71586:CDS
TGGCCGCTTCAAGCCTTGTG+AGG 0.640093 1.4:+81788789 MS.gene71586:CDS
ATACCTTTGTTGATAGAGTG+GGG 0.640435 1.4:-81790261 None:intergenic
AGAGTCAGCATGGTTGACAA+AGG 0.644631 1.4:-81790887 None:intergenic
TCTGTTATGATTGATACTGA+AGG 0.647107 1.4:+81789217 MS.gene71586:CDS
GAAATAGTGAAAGCTTCTGA+CGG 0.651977 1.4:+81791156 MS.gene71586:CDS
GACGGAATCATGGTAGCTCG+AGG 0.652969 1.4:+81791174 MS.gene71586:CDS
GGTCAAGGTTAGAGCAACAG+TGG 0.660617 1.4:+81788892 MS.gene71586:CDS
GCTAGGCTTAACATGTGTCA+TGG 0.662490 1.4:+81789124 MS.gene71586:CDS
AGAGCAACAGTGGAAGTGGG+TGG 0.662646 1.4:+81788902 MS.gene71586:CDS
GAGATGGAAAGCTTGTCAGG+AGG 0.673618 1.4:+81790227 MS.gene71586:CDS
ATATACTGGATTTCCTCACA+AGG 0.681444 1.4:-81788802 None:intergenic
ATTCAAGGGAAAACAACATG+TGG 0.684730 1.4:+81788871 MS.gene71586:CDS
TCAGTGAAAGCAAAGATGGG+AGG 0.685783 1.4:-81792587 None:intergenic
GCTCCCCACTCTATCAACAA+AGG 0.690309 1.4:+81790258 MS.gene71586:CDS
AGAATCCATTCATAACCTGG+AGG 0.710102 1.4:+81791134 MS.gene71586:CDS
ATGGCTCTGAATTTGCAATG+GGG 0.789601 1.4:+81792626 MS.gene71586:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCTGAATTAAAATATAAT+CGG - chr1.4:81791833-81791852 None:intergenic 10.0%
!! AATTATACTAAAATTGTAAA+AGG - chr1.4:81790609-81790628 None:intergenic 10.0%
!! ATTATACTAAAATTGTAAAA+GGG - chr1.4:81790608-81790627 None:intergenic 10.0%
!! AAACTTATGAAAACATATTA+TGG + chr1.4:81789391-81789410 MS.gene71586:intron 15.0%
!! AACAAAAAAAAATATCAAAC+AGG - chr1.4:81790397-81790416 None:intergenic 15.0%
!! ACAAAAAAAAATATCAAACA+GGG - chr1.4:81790396-81790415 None:intergenic 15.0%
!! ATAATAACATGTATATTCAT+CGG - chr1.4:81790030-81790049 None:intergenic 15.0%
!! GATAGCTTATAAAATTAATT+TGG + chr1.4:81789456-81789475 MS.gene71586:intron 15.0%
!! TAAGATAAATGATTTATGTT+TGG - chr1.4:81792333-81792352 None:intergenic 15.0%
!! TTATAAGATAAAACATATCA+AGG - chr1.4:81790800-81790819 None:intergenic 15.0%
!! TTTGCTTCAAAAAAAAAAAA+AGG - chr1.4:81792247-81792266 None:intergenic 15.0%
!!! AAAATTGATTTTGTTATGTT+TGG + chr1.4:81791991-81792010 MS.gene71586:intron 15.0%
!!! AAATTGATTTTGTTATGTTT+GGG + chr1.4:81791992-81792011 MS.gene71586:intron 15.0%
!!! GAACTTTTTTCTTTTTTTTT+TGG + chr1.4:81790735-81790754 MS.gene71586:intron 15.0%
!!! TTTCATAAGTTTTCAAAAAA+CGG - chr1.4:81789383-81789402 None:intergenic 15.0%
!! AAACTGTATAAATGATTCTT+CGG - chr1.4:81790973-81790992 None:intergenic 20.0%
!! AAGTCTTTCAAAATTGAATT+TGG - chr1.4:81791970-81791989 None:intergenic 20.0%
!! AATTTAACTATCTTGACAAA+TGG - chr1.4:81790461-81790480 None:intergenic 20.0%
!! ACTTATAATTAGCATATGTT+AGG + chr1.4:81789303-81789322 MS.gene71586:intron 20.0%
!! AGTCTTTCAAAATTGAATTT+GGG - chr1.4:81791969-81791988 None:intergenic 20.0%
!! CAAAAAAAAATATCAAACAG+GGG - chr1.4:81790395-81790414 None:intergenic 20.0%
!! CACAAATTAAGAATGTTAAA+TGG + chr1.4:81791069-81791088 MS.gene71586:intron 20.0%
!! CTTATAATTAGCATATGTTA+GGG + chr1.4:81789304-81789323 MS.gene71586:intron 20.0%
!! GAAAACTTATTATCATAGAT+AGG - chr1.4:81791397-81791416 None:intergenic 20.0%
!! TATCTTATAAATTTATCCAC+AGG + chr1.4:81790810-81790829 MS.gene71586:intron 20.0%
!! TTTATTGTAATAGGTAAGTT+AGG - chr1.4:81791438-81791457 None:intergenic 20.0%
!! TTTGTGTTTGAATTTGAATT+GGG + chr1.4:81789837-81789856 MS.gene71586:intron 20.0%
!!! AATAAGTTATTTCTACAACA+AGG - chr1.4:81789492-81789511 None:intergenic 20.0%
!!! ATAAGTTATTTCTACAACAA+GGG - chr1.4:81789491-81789510 None:intergenic 20.0%
!!! CATCTTATTTTTTTAAAGCT+CGG - chr1.4:81789767-81789786 None:intergenic 20.0%
!!! CTTATAAAATTAATTTGGCT+TGG + chr1.4:81789461-81789480 MS.gene71586:intron 20.0%
!!! CTTCAAATTAGAAAGAATTT+TGG - chr1.4:81792046-81792065 None:intergenic 20.0%
!!! TGTATAAATTGATTTTACCT+CGG - chr1.4:81791343-81791362 None:intergenic 20.0%
! AAAAAAAAAAAAAGGCAACC+CGG - chr1.4:81792239-81792258 None:intergenic 25.0%
! AAGCGAAGATTTATTGTAAT+AGG - chr1.4:81791447-81791466 None:intergenic 25.0%
! AATTTCAGGAAGATTCAATA+TGG + chr1.4:81789880-81789899 MS.gene71586:intron 25.0%
! ACTTATTTGAGCATATCTAT+CGG + chr1.4:81789340-81789359 MS.gene71586:intron 25.0%
! ATAAATTTATCCACAGGATT+GGG + chr1.4:81790816-81790835 MS.gene71586:intron 25.0%
! ATTCAAGTGAATTCTGAATT+TGG + chr1.4:81790052-81790071 MS.gene71586:intron 25.0%
! GATTTATGTTTGGTTATGTT+CGG - chr1.4:81792323-81792342 None:intergenic 25.0%
! GTTTGTGTTTGAATTTGAAT+TGG + chr1.4:81789836-81789855 MS.gene71586:intron 25.0%
! TACAGTTCAAATTTCATGTT+TGG - chr1.4:81791881-81791900 None:intergenic 25.0%
! TATAAATTTATCCACAGGAT+TGG + chr1.4:81790815-81790834 MS.gene71586:intron 25.0%
! TGATCTTAACAAAATAAGTG+CGG - chr1.4:81790312-81790331 None:intergenic 25.0%
! TGGTATAATTCTTTGAATAG+TGG + chr1.4:81790755-81790774 MS.gene71586:intron 25.0%
! TTGAACTGTATGATTGTAAT+TGG + chr1.4:81791891-81791910 MS.gene71586:intron 25.0%
!! ATAAGTTTTGCATCTAAACA+GGG + chr1.4:81789791-81789810 MS.gene71586:intron 25.0%
!! CAAATTAGAAAGAATTTTGG+AGG - chr1.4:81792043-81792062 None:intergenic 25.0%
!! TAAGTTTTCTGTTTTCCTTT+TGG + chr1.4:81791408-81791427 MS.gene71586:intron 25.0%
!! TATCTTTGCCAATACTTTTA+TGG - chr1.4:81791106-81791125 None:intergenic 25.0%
!! TTTCAGATCCATAAAAGTAT+TGG + chr1.4:81791095-81791114 MS.gene71586:intron 25.0%
!! TTTGTTGTCATTGAAAAAAC+TGG + chr1.4:81790136-81790155 MS.gene71586:CDS 25.0%
!!! CGAGCTTTAAAAAAATAAGA+TGG + chr1.4:81789765-81789784 MS.gene71586:intron 25.0%
!!! TTATTTTGTTAAGATCATGC+AGG + chr1.4:81790315-81790334 MS.gene71586:intron 25.0%
AACATTTACTCGGTAATTGA+AGG - chr1.4:81790574-81790593 None:intergenic 30.0%
AAGAAGCTTAATGACGAAAA+GGG + chr1.4:81789184-81789203 MS.gene71586:CDS 30.0%
AAGACTTTGCAACATTTACT+CGG - chr1.4:81790584-81790603 None:intergenic 30.0%
AAGCTATCATAGAGAACTTA+TGG - chr1.4:81789444-81789463 None:intergenic 30.0%
AATCATCGTGTTTCAAATCT+TGG + chr1.4:81788848-81788867 MS.gene71586:CDS 30.0%
ACATGCACTAATATAGTTAC+AGG - chr1.4:81791741-81791760 None:intergenic 30.0%
ATAAACTTTGGTATAGCTGA+GGG + chr1.4:81790844-81790863 MS.gene71586:CDS 30.0%
ATGCTTTGTGTAAACAAAGA+TGG - chr1.4:81792528-81792547 None:intergenic 30.0%
CCTGAAATTGAAACAAGAAT+TGG - chr1.4:81789869-81789888 None:intergenic 30.0%
GAATTTGGTTAATGATTGTC+AGG + chr1.4:81790067-81790086 MS.gene71586:intron 30.0%
GATCTTAACAAAATAAGTGC+GGG - chr1.4:81790311-81790330 None:intergenic 30.0%
GATGATTCAAATCAAGTGAA+GGG - chr1.4:81788835-81788854 None:intergenic 30.0%
GTTCAGCTTATGAAATCTAA+AGG + chr1.4:81792707-81792726 MS.gene71586:CDS 30.0%
GTTTCAAATCTTGGATTCAA+GGG + chr1.4:81788857-81788876 MS.gene71586:CDS 30.0%
TAAGAAGCTTAATGACGAAA+AGG + chr1.4:81789183-81789202 MS.gene71586:CDS 30.0%
TATAAACTTTGGTATAGCTG+AGG + chr1.4:81790843-81790862 MS.gene71586:CDS 30.0%
TCTAAAGGATTGATCAACAA+AGG + chr1.4:81792722-81792741 MS.gene71586:CDS 30.0%
TCTGATAAATCAACAAGAAG+TGG - chr1.4:81792659-81792678 None:intergenic 30.0%
TCTGTTATGATTGATACTGA+AGG + chr1.4:81789217-81789236 MS.gene71586:CDS 30.0%
TGTTTCAAATCTTGGATTCA+AGG + chr1.4:81788856-81788875 MS.gene71586:CDS 30.0%
! AAAATATCAAACAGGGGTTT+TGG - chr1.4:81790389-81790408 None:intergenic 30.0%
! ATATACCTTTGTTGATAGAG+TGG - chr1.4:81790266-81790285 None:intergenic 30.0%
! ATCTTTGTTTACACAAAGCA+TGG + chr1.4:81792527-81792546 MS.gene71586:CDS 30.0%
! CATCTTTTCAAAGGAACAAA+AGG - chr1.4:81791011-81791030 None:intergenic 30.0%
! CCAATTCTTGTTTCAATTTC+AGG + chr1.4:81789866-81789885 MS.gene71586:intron 30.0%
! GATAAGTTTTGCATCTAAAC+AGG + chr1.4:81789790-81789809 MS.gene71586:intron 30.0%
! GATGAAATTGTTATTGATGG+TGG + chr1.4:81790103-81790122 MS.gene71586:CDS 30.0%
! GGTGATGAAATTGTTATTGA+TGG + chr1.4:81790100-81790119 MS.gene71586:CDS 30.0%
! TATACCTTTGTTGATAGAGT+GGG - chr1.4:81790265-81790284 None:intergenic 30.0%
! TGCATGTATAGTTTCACTTT+TGG + chr1.4:81791754-81791773 MS.gene71586:intron 30.0%
! TTCTAAAGAGCATGAATTAC+TGG + chr1.4:81790540-81790559 MS.gene71586:intron 30.0%
! TTCTAATTTGAAGCAAAGAG+CGG + chr1.4:81792053-81792072 MS.gene71586:intron 30.0%
! TTTACTGCTGAACATTTTGT+GGG + chr1.4:81789906-81789925 MS.gene71586:CDS 30.0%
!! AATTGTTATTGATGGTGGAA+TGG + chr1.4:81790108-81790127 MS.gene71586:CDS 30.0%
!! CATGTATAGTTTCACTTTTG+GGG + chr1.4:81791756-81791775 MS.gene71586:intron 30.0%
!! GCATGTATAGTTTCACTTTT+GGG + chr1.4:81791755-81791774 MS.gene71586:intron 30.0%
!! GTGTCTATTTGATTTTACTG+TGG - chr1.4:81792415-81792434 None:intergenic 30.0%
!! TCTTCGCTTTTATGCAATAA+AGG + chr1.4:81791458-81791477 MS.gene71586:intron 30.0%
AAGAAGAAGCAATGTTGCAT+TGG + chr1.4:81788949-81788968 MS.gene71586:CDS 35.0%
AATGGCATCGTGATGTTATT+AGG + chr1.4:81789155-81789174 MS.gene71586:CDS 35.0%
ACAAAATAAGTGCGGGAAAA+AGG - chr1.4:81790304-81790323 None:intergenic 35.0%
ACAGTCTCTTGTGTAAAACA+TGG + chr1.4:81792142-81792161 MS.gene71586:intron 35.0%
AGAAGGAGAATTAATGGTGA+AGG + chr1.4:81789000-81789019 MS.gene71586:CDS 35.0%
ATATACTGGATTTCCTCACA+AGG - chr1.4:81788805-81788824 None:intergenic 35.0%
ATCTCTCCAGAAACTACATT+TGG - chr1.4:81790212-81790231 None:intergenic 35.0%
ATGCAGATTTCATAGCAACA+AGG - chr1.4:81792442-81792461 None:intergenic 35.0%
ATTATATCCTCCTGAACTGT+AGG - chr1.4:81791234-81791253 None:intergenic 35.0%
ATTCAAGGGAAAACAACATG+TGG + chr1.4:81788871-81788890 MS.gene71586:CDS 35.0%
CAGATTCATGTTGTTGATCA+TGG + chr1.4:81789244-81789263 MS.gene71586:CDS 35.0%
CGATGATTCAAATCAAGTGA+AGG - chr1.4:81788836-81788855 None:intergenic 35.0%
CTCTATGTTTATGATCATCG+TGG - chr1.4:81791367-81791386 None:intergenic 35.0%
CTCTTGTGTAAAACATGGTA+AGG + chr1.4:81792147-81792166 MS.gene71586:intron 35.0%
CTTAGAATCCATTCATAACC+TGG + chr1.4:81791131-81791150 MS.gene71586:CDS 35.0%
CTTCTCAATCACCATAAACT+TGG + chr1.4:81791636-81791655 MS.gene71586:CDS 35.0%
GAAATAGTGAAAGCTTCTGA+CGG + chr1.4:81791156-81791175 MS.gene71586:CDS 35.0%
GAAGGAGAATTAATGGTGAA+GGG + chr1.4:81789001-81789020 MS.gene71586:CDS 35.0%
GATTGGGCTGATATAAACTT+TGG + chr1.4:81790832-81790851 MS.gene71586:CDS 35.0%
GATTTAAAGAACTACCTCTC+TGG + chr1.4:81790916-81790935 MS.gene71586:CDS 35.0%
GGTTTCAGAAGGAGAATTAA+TGG + chr1.4:81788994-81789013 MS.gene71586:CDS 35.0%
TAGAATGGAATCATGGAGTA+GGG + chr1.4:81791596-81791615 MS.gene71586:CDS 35.0%
TATTTCCTCCAGGTTATGAA+TGG - chr1.4:81791142-81791161 None:intergenic 35.0%
TCAAATAAGTCAATCCAGAG+AGG - chr1.4:81789330-81789349 None:intergenic 35.0%
TCATATAGAAGTAACTGTCC+CGG - chr1.4:81790354-81790373 None:intergenic 35.0%
TCTGGAAAATCAACCAAGTA+AGG + chr1.4:81790934-81790953 MS.gene71586:intron 35.0%
TGCACTAATATAGTTACAGG+TGG - chr1.4:81791738-81791757 None:intergenic 35.0%
TTACACAAAGCATGGATACA+TGG + chr1.4:81792535-81792554 MS.gene71586:CDS 35.0%
! AAAGAGCATGAATTACTGGT+AGG + chr1.4:81790544-81790563 MS.gene71586:intron 35.0%
! AAATGTAGTTTCTGGAGAGA+TGG + chr1.4:81790211-81790230 MS.gene71586:CDS 35.0%
! ACACATCAGCATCTTTTCAA+AGG - chr1.4:81791020-81791039 None:intergenic 35.0%
! ATACCTTTGTTGATAGAGTG+GGG - chr1.4:81790264-81790283 None:intergenic 35.0%
! GTGTGCTATACTGATCATTT+TGG - chr1.4:81790653-81790672 None:intergenic 35.0%
! GTTTACTGCTGAACATTTTG+TGG + chr1.4:81789905-81789924 MS.gene71586:CDS 35.0%
! TGCAGGACAAATTTTTCATC+CGG + chr1.4:81790332-81790351 MS.gene71586:intron 35.0%
! TGGTCTTAACCTGAATTGAT+TGG - chr1.4:81792805-81792824 None:intergenic 35.0%
! TTACACAAGAGACTGTTTTC+AGG - chr1.4:81792138-81792157 None:intergenic 35.0%
!! AATGGCTCTGAATTTGCAAT+GGG + chr1.4:81792625-81792644 MS.gene71586:CDS 35.0%
!! AGTTTCACTTTTGGGGAATT+TGG + chr1.4:81791763-81791782 MS.gene71586:intron 35.0%
!! CATTGTTGACTTCAAAACCA+TGG - chr1.4:81788771-81788790 None:intergenic 35.0%
!! TAGTTTGCTTGAACTGTGAA+TGG - chr1.4:81789939-81789958 None:intergenic 35.0%
!! TGATTGTCAGGTATTGAAGT+AGG + chr1.4:81790079-81790098 MS.gene71586:intron 35.0%
!! TTAATGGTGAAGGGTTTTAG+AGG + chr1.4:81789010-81789029 MS.gene71586:CDS 35.0%
!!! CATGGTTTTGAAGTCAACAA+TGG + chr1.4:81788769-81788788 MS.gene71586:CDS 35.0%
!!! TAATGGTGAAGGGTTTTAGA+GGG + chr1.4:81789011-81789030 MS.gene71586:CDS 35.0%
AAGAAGCAATGTTGCATTGG+AGG + chr1.4:81788952-81788971 MS.gene71586:CDS 40.0%
AAGCTGCAAATTAATCTCCC+AGG + chr1.4:81789530-81789549 MS.gene71586:intron 40.0%
AAGCTTTCACTATTTCCTCC+AGG - chr1.4:81791152-81791171 None:intergenic 40.0%
AATCCTTAACAGAGTCAGCA+TGG - chr1.4:81790900-81790919 None:intergenic 40.0%
AATGGCTCTCCAATCAATTC+AGG + chr1.4:81792793-81792812 MS.gene71586:CDS 40.0%
ACAAAGCTTGTGTGTACTGT+TGG + chr1.4:81789043-81789062 MS.gene71586:CDS 40.0%
ACAGTTCAAGCAAACTATCC+AGG + chr1.4:81789942-81789961 MS.gene71586:CDS 40.0%
AGAAGCAATGTTGCATTGGA+GGG + chr1.4:81788953-81788972 MS.gene71586:CDS 40.0%
AGAATCCATTCATAACCTGG+AGG + chr1.4:81791134-81791153 MS.gene71586:CDS 40.0%
AGCATGGTTGACAAAGGATA+GGG - chr1.4:81790884-81790903 None:intergenic 40.0%
AGCCATAGCAAAGCTCTATA+TGG - chr1.4:81789656-81789675 None:intergenic 40.0%
AGCTGCAAATTAATCTCCCA+GGG + chr1.4:81789531-81789550 MS.gene71586:intron 40.0%
ATAATCGGACAGTCTAGATG+TGG - chr1.4:81791818-81791837 None:intergenic 40.0%
ATCGTCAGTGAAAGCAAAGA+TGG - chr1.4:81792594-81792613 None:intergenic 40.0%
ATTGGAGGATCTAGAGAAGT+TGG + chr1.4:81789081-81789100 MS.gene71586:CDS 40.0%
ATTTGCTCAGTGATGCAATC+TGG - chr1.4:81791672-81791691 None:intergenic 40.0%
CAAAGGAGATGTTGTTCTAG+TGG + chr1.4:81792739-81792758 MS.gene71586:CDS 40.0%
CCAGCCTATCACAAACTATT+AGG - chr1.4:81789817-81789836 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG + chr1.4:81792173-81792192 MS.gene71586:intron 40.0%
CTAGCAGTAGAATGGAATCA+TGG + chr1.4:81791589-81791608 MS.gene71586:CDS 40.0%
GATCTAGAGAAGTTGGCATT+GGG + chr1.4:81789088-81789107 MS.gene71586:CDS 40.0%
GCAATGATGCTCCAAGTTTA+TGG - chr1.4:81791650-81791669 None:intergenic 40.0%
GCCATAGCAAAGCTCTATAT+GGG - chr1.4:81789655-81789674 None:intergenic 40.0%
GGATATGACTAGCAGTAGAA+TGG + chr1.4:81791581-81791600 MS.gene71586:CDS 40.0%
GGTAAGTTAGGCATTCCAAA+AGG - chr1.4:81791426-81791445 None:intergenic 40.0%
GGTTTGGATATGGTTTCAGA+AGG + chr1.4:81788983-81789002 MS.gene71586:CDS 40.0%
GTAGAATGGAATCATGGAGT+AGG + chr1.4:81791595-81791614 MS.gene71586:CDS 40.0%
GTGAGGAAATCCAGTATATC+TGG + chr1.4:81788806-81788825 MS.gene71586:CDS 40.0%
GTTGTTGTCATGTGACTGAA+AGG + chr1.4:81792098-81792117 MS.gene71586:intron 40.0%
TATAGTTACAGGTGGCAAGA+AGG - chr1.4:81791730-81791749 None:intergenic 40.0%
TATCACCTCAACTTTAACCG+AGG - chr1.4:81789278-81789297 None:intergenic 40.0%
TCGTCAGTGAAAGCAAAGAT+GGG - chr1.4:81792593-81792612 None:intergenic 40.0%
TGAAGGGTTTCCAGATATAC+TGG - chr1.4:81788819-81788838 None:intergenic 40.0%
TGAATTGATTGGAGAGCCAT+TGG - chr1.4:81792794-81792813 None:intergenic 40.0%
TGAGCAAATTCCTACAGTTC+AGG + chr1.4:81791221-81791240 MS.gene71586:CDS 40.0%
TGAGTCTATGCTTCCTTACT+TGG - chr1.4:81790950-81790969 None:intergenic 40.0%
TGTAATTGGAAGTCCAGATG+TGG + chr1.4:81791905-81791924 MS.gene71586:intron 40.0%
TGTGTCATGGTACTAGAGAA+TGG + chr1.4:81789137-81789156 MS.gene71586:CDS 40.0%
TTACTACCTGCAGAAAAACC+TGG - chr1.4:81789963-81789982 None:intergenic 40.0%
TTTATATCAGCCCAATCCTG+TGG - chr1.4:81790829-81790848 None:intergenic 40.0%
! AACTATCCAGGTTTTTCTGC+AGG + chr1.4:81789954-81789973 MS.gene71586:CDS 40.0%
! ACTGTAGGAATTTGCTCAAG+TGG - chr1.4:81791219-81791238 None:intergenic 40.0%
! AGGGCCTAATAGTTTGTGAT+AGG + chr1.4:81789810-81789829 MS.gene71586:intron 40.0%
! ATGCAACTGTGCTGTTGAAA+TGG + chr1.4:81791692-81791711 MS.gene71586:CDS 40.0%
! CCTAATAGTTTGTGATAGGC+TGG + chr1.4:81789814-81789833 MS.gene71586:intron 40.0%
! GCAGGACAAATTTTTCATCC+GGG + chr1.4:81790333-81790352 MS.gene71586:intron 40.0%
! TGCAACTGTGCTGTTGAAAT+GGG + chr1.4:81791693-81791712 MS.gene71586:CDS 40.0%
! TTCATTTGGACAGAAAGCAC+TGG + chr1.4:81791551-81791570 MS.gene71586:CDS 40.0%
!! ACTTGGTTGATTTTCCAGAG+AGG - chr1.4:81790933-81790952 None:intergenic 40.0%
!! ATGGCTCTGAATTTGCAATG+GGG + chr1.4:81792626-81792645 MS.gene71586:CDS 40.0%
!! CAGAAACTACATTTGGCTCT+GGG - chr1.4:81790205-81790224 None:intergenic 40.0%
!! GAATGGCTCTGAATTTGCAA+TGG + chr1.4:81792624-81792643 MS.gene71586:CDS 40.0%
!! GAGTCAGCTATTGGTTCATT+TGG + chr1.4:81791537-81791556 MS.gene71586:CDS 40.0%
!! TGACGATGAAAGTACTCGAA+TGG + chr1.4:81792607-81792626 MS.gene71586:CDS 40.0%
AAAGCAAAGATGGGAGGATC+TGG - chr1.4:81792584-81792603 None:intergenic 45.0%
AATGGAATCATGGAGTAGGG+AGG + chr1.4:81791599-81791618 MS.gene71586:CDS 45.0%
ACCTCAACTTTAACCGAGGA+AGG - chr1.4:81789274-81789293 None:intergenic 45.0%
ACCTTCCTCGGTTAAAGTTG+AGG + chr1.4:81789270-81789289 MS.gene71586:CDS 45.0%
AGAGACCAATACCACCACTA+GGG - chr1.4:81789717-81789736 None:intergenic 45.0%
AGAGTCAGCATGGTTGACAA+AGG - chr1.4:81790890-81790909 None:intergenic 45.0%
AGCTGAGAAGCTACAATCAC+TGG - chr1.4:81791282-81791301 None:intergenic 45.0%
CAAGTGGTATTTCGACTCCA+AGG - chr1.4:81791203-81791222 None:intergenic 45.0%
CAGCATGGTTGACAAAGGAT+AGG - chr1.4:81790885-81790904 None:intergenic 45.0%
CCAGAGCCAAATGTAGTTTC+TGG + chr1.4:81790203-81790222 MS.gene71586:CDS 45.0%
CGTTGTAAGTGCATAGATGC+TGG + chr1.4:81790169-81790188 MS.gene71586:CDS 45.0%
GAAAGCTTCTGACGGAATCA+TGG + chr1.4:81791164-81791183 MS.gene71586:CDS 45.0%
GCAAATTCCTACAGTTCAGG+AGG + chr1.4:81791224-81791243 MS.gene71586:CDS 45.0%
GCCCATATAGAGCTTTGCTA+TGG + chr1.4:81789651-81789670 MS.gene71586:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr1.4:81792172-81792191 MS.gene71586:intron 45.0%
GCTAGGCTTAACATGTGTCA+TGG + chr1.4:81789124-81789143 MS.gene71586:CDS 45.0%
GCTGCGTACAATACACCAAA+TGG + chr1.4:81792169-81792188 MS.gene71586:intron 45.0%
GGATCTAGAGAAGTTGGCAT+TGG + chr1.4:81789087-81789106 MS.gene71586:CDS 45.0%
GGGAAAACAACATGTGGTCA+AGG + chr1.4:81788877-81788896 MS.gene71586:CDS 45.0%
GTCATGTGACTGAAAGGTCA+CGG + chr1.4:81792104-81792123 MS.gene71586:intron 45.0%
GTTAGAGCAACAGTGGAAGT+GGG + chr1.4:81788899-81788918 MS.gene71586:CDS 45.0%
GTTGCATTGGAGGGAAGTTT+GGG + chr1.4:81788962-81788981 MS.gene71586:CDS 45.0%
TAATCTCCCAGGGATTGACT+TGG + chr1.4:81789541-81789560 MS.gene71586:intron 45.0%
TAGCAAAGCTCTATATGGGC+TGG - chr1.4:81789651-81789670 None:intergenic 45.0%
TCAGTGAAAGCAAAGATGGG+AGG - chr1.4:81792590-81792609 None:intergenic 45.0%
TCATGTGACTGAAAGGTCAC+GGG + chr1.4:81792105-81792124 MS.gene71586:intron 45.0%
TCCAACACGTTCAACTCCAA+TGG + chr1.4:81792775-81792794 MS.gene71586:CDS 45.0%
TCCTCCAATGAACTACAAGC+AGG - chr1.4:81789070-81789089 None:intergenic 45.0%
TCCTGCTTGTAGTTCATTGG+AGG + chr1.4:81789066-81789085 MS.gene71586:CDS 45.0%
TGGGAGGAATGAATGTTGCT+AGG + chr1.4:81789107-81789126 MS.gene71586:CDS 45.0%
TGGGGAATTTGGATTGTGTG+CGG + chr1.4:81791774-81791793 MS.gene71586:intron 45.0%
TGGTCCTGCTTGTAGTTCAT+TGG + chr1.4:81789063-81789082 MS.gene71586:CDS 45.0%
TGTTGCATTGGAGGGAAGTT+TGG + chr1.4:81788961-81788980 MS.gene71586:CDS 45.0%
TTGTCTGGTGAGTCAGCTAT+TGG + chr1.4:81791528-81791547 MS.gene71586:CDS 45.0%
TTTCCTCACAAGGCTTGAAG+CGG - chr1.4:81788795-81788814 None:intergenic 45.0%
! ATTGGAGGGAAGTTTGGGTT+TGG + chr1.4:81788967-81788986 MS.gene71586:CDS 45.0%
! CCAGAAACTACATTTGGCTC+TGG - chr1.4:81790206-81790225 None:intergenic 45.0%
! GGGAAGTTTGGGTTTGGATA+TGG + chr1.4:81788973-81788992 MS.gene71586:CDS 45.0%
!! CAACCATGCTGACTCTGTTA+AGG + chr1.4:81790894-81790913 MS.gene71586:CDS 45.0%
!! TAGTGGTGGTATTGGTCTCT+CGG + chr1.4:81789717-81789736 MS.gene71586:intron 45.0%
!! TATTGGTCTCTCGGATTAGC+CGG + chr1.4:81789726-81789745 MS.gene71586:intron 45.0%
!!! TGAAGGGTTTTAGAGGGTTG+AGG + chr1.4:81789017-81789036 MS.gene71586:CDS 45.0%
AACAGTGGAAGTGGGTGGTT+TGG + chr1.4:81788907-81788926 MS.gene71586:CDS 50.0%
ACACAGGAATCGTTGGCCAA+TGG - chr1.4:81789624-81789643 None:intergenic 50.0%
ACCAATACCACCACTAGGGT+GGG - chr1.4:81789713-81789732 None:intergenic 50.0%
ACTAAAGCTCCCGCATATGC+AGG - chr1.4:81792213-81792232 None:intergenic 50.0%
AGCATATGTTAGGGCCTCTC+TGG + chr1.4:81789313-81789332 MS.gene71586:intron 50.0%
ATTGGAAGTCCAGATGTGGC+TGG + chr1.4:81791909-81791928 MS.gene71586:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr1.4:81792082-81792101 None:intergenic 50.0%
CTAAAGCTCCCGCATATGCA+GGG - chr1.4:81792212-81792231 None:intergenic 50.0%
CTGAGGATGGAATCCTCCAT+TGG + chr1.4:81789605-81789624 MS.gene71586:intron 50.0%
CTGTCTGCAGCCAACAAACT+TGG + chr1.4:81792494-81792513 MS.gene71586:intron 50.0%
GAAGCAAAGAGCGGTAACCT+TGG + chr1.4:81792062-81792081 MS.gene71586:intron 50.0%
GAGAGACCAATACCACCACT+AGG - chr1.4:81789718-81789737 None:intergenic 50.0%
GAGATGGAAAGCTTGTCAGG+AGG + chr1.4:81790227-81790246 MS.gene71586:CDS 50.0%
GCCATTGGAGTTGAACGTGT+TGG - chr1.4:81792779-81792798 None:intergenic 50.0%
GCGGATGCTTTGATGTTGTC+TGG + chr1.4:81791513-81791532 MS.gene71586:CDS 50.0%
GCTCCCCACTCTATCAACAA+AGG + chr1.4:81790258-81790277 MS.gene71586:CDS 50.0%
GGAGAGATGGAAAGCTTGTC+AGG + chr1.4:81790224-81790243 MS.gene71586:CDS 50.0%
GGCATCCACACCAAGTTTGT+TGG - chr1.4:81792507-81792526 None:intergenic 50.0%
GGTCAAGGTTAGAGCAACAG+TGG + chr1.4:81788892-81788911 MS.gene71586:CDS 50.0%
GGTTAGAGCAACAGTGGAAG+TGG + chr1.4:81788898-81788917 MS.gene71586:CDS 50.0%
GTGGTGAAAGCTTGTGACCT+AGG + chr1.4:81789563-81789582 MS.gene71586:intron 50.0%
TCACCACCAAGTCAATCCCT+GGG - chr1.4:81789550-81789569 None:intergenic 50.0%
TGAAGCAGTTCGACAGTACG+CGG + chr1.4:81791494-81791513 MS.gene71586:CDS 50.0%
TGGCCAACGATTCCTGTGTT+AGG + chr1.4:81789625-81789644 MS.gene71586:intron 50.0%
TGGCCTAACACAGGAATCGT+TGG - chr1.4:81789631-81789650 None:intergenic 50.0%
TTCACCACCAAGTCAATCCC+TGG - chr1.4:81789551-81789570 None:intergenic 50.0%
TTCCATCCTCAGTCCTAGAG+AGG - chr1.4:81789597-81789616 None:intergenic 50.0%
! CTAGAGAAGTTGGCATTGGG+AGG + chr1.4:81789091-81789110 MS.gene71586:CDS 50.0%
! GATTTTACCTCGGCACGAGT+TGG - chr1.4:81791333-81791352 None:intergenic 50.0%
! TGATCATGGAGCACCTTCCT+CGG + chr1.4:81789258-81789277 MS.gene71586:CDS 50.0%
! TGCAGCCAACAAACTTGGTG+TGG + chr1.4:81792499-81792518 MS.gene71586:intron 50.0%
!! ACAGAAAGCACTGGCAGTGT+TGG + chr1.4:81791560-81791579 MS.gene71586:CDS 50.0%
!! CAAGTTTGTTGGCTGCAGAC+AGG - chr1.4:81792496-81792515 None:intergenic 50.0%
!! TATATGGGCTGGCCTAACAC+AGG - chr1.4:81789640-81789659 None:intergenic 50.0%
!! TCTCGGATTAGCCGGTCATT+GGG + chr1.4:81789734-81789753 MS.gene71586:intron 50.0%
AGAGCAACAGTGGAAGTGGG+TGG + chr1.4:81788902-81788921 MS.gene71586:CDS 55.0%
ATGGTAGCTCGAGGTGACCT+TGG + chr1.4:81791183-81791202 MS.gene71586:CDS 55.0%
CAATACCACCACTAGGGTGG+GGG - chr1.4:81789711-81789730 None:intergenic 55.0%
CAGGAATCGTTGGCCAATGG+AGG - chr1.4:81789621-81789640 None:intergenic 55.0%
CCAATACCACCACTAGGGTG+GGG - chr1.4:81789712-81789731 None:intergenic 55.0%
GACCAATACCACCACTAGGG+TGG - chr1.4:81789714-81789733 None:intergenic 55.0%
GACGGAATCATGGTAGCTCG+AGG + chr1.4:81791174-81791193 MS.gene71586:CDS 55.0%
GTGTGCGGTGTGACTACATG+TGG + chr1.4:81791789-81791808 MS.gene71586:intron 55.0%
TCGGTATCCCACCCAATGAC+CGG - chr1.4:81789748-81789767 None:intergenic 55.0%
TGGCTGCAGACAGGCACAAA+AGG - chr1.4:81792487-81792506 None:intergenic 55.0%
TGTGTGCAGTCATGGGGTTG+TGG + chr1.4:81791933-81791952 MS.gene71586:intron 55.0%
! AGTGGAAGTGGGTGGTTTGG+AGG + chr1.4:81788910-81788929 MS.gene71586:CDS 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + chr1.4:81792217-81792236 MS.gene71586:intron 55.0%
! CTAGAGAGGAGCACACTCCT+AGG - chr1.4:81789583-81789602 None:intergenic 55.0%
! CTAGGAGTGTGCTCCTCTCT+AGG + chr1.4:81789581-81789600 MS.gene71586:intron 55.0%
!! CTCCTCTCTAGGACTGAGGA+TGG + chr1.4:81789592-81789611 MS.gene71586:intron 55.0%
!! CTCTCGGATTAGCCGGTCAT+TGG + chr1.4:81789733-81789752 MS.gene71586:intron 55.0%
!! GGATTAGCCGGTCATTGGGT+GGG + chr1.4:81789738-81789757 MS.gene71586:intron 55.0%
!! TCTCCCAGGGATTGACTTGG+TGG + chr1.4:81789544-81789563 MS.gene71586:intron 55.0%
!! TGTGCTCCTCTCTAGGACTG+AGG + chr1.4:81789588-81789607 MS.gene71586:intron 55.0%
AGCGGTAACCTTGGCGCAAC+TGG + chr1.4:81792071-81792090 MS.gene71586:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG - chr1.4:81792200-81792219 None:intergenic 60.0%
CCCCACCCTAGTGGTGGTAT+TGG + chr1.4:81789709-81789728 MS.gene71586:intron 60.0%
CTTCCCGGACCCTGCATATG+CGG + chr1.4:81792200-81792219 MS.gene71586:intron 60.0%
GCATATGCAGGGTCCGGGAA+GGG - chr1.4:81792201-81792220 None:intergenic 60.0%
GCTGGCTGTGTGCAGTCATG+GGG + chr1.4:81791927-81791946 MS.gene71586:intron 60.0%
TCCAACACCAACTCGTGCCG+AGG + chr1.4:81791323-81791342 MS.gene71586:CDS 60.0%
TGCACACAGCCAGCCACATC+TGG - chr1.4:81791921-81791940 None:intergenic 60.0%
TTCCCGGACCCTGCATATGC+GGG + chr1.4:81792201-81792220 MS.gene71586:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr1.4:81792185-81792204 MS.gene71586:intron 60.0%
! GGCTGGCTGTGTGCAGTCAT+GGG + chr1.4:81791926-81791945 MS.gene71586:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG + chr1.4:81792218-81792237 MS.gene71586:intron 60.0%
! TGGCCGCTTCAAGCCTTGTG+AGG + chr1.4:81788789-81788808 MS.gene71586:CDS 60.0%
! TGGCTGGCTGTGTGCAGTCA+TGG + chr1.4:81791925-81791944 MS.gene71586:intron 60.0%
!! ACCTCGGCACGAGTTGGTGT+TGG - chr1.4:81791327-81791346 None:intergenic 60.0%
!! CGGATTAGCCGGTCATTGGG+TGG + chr1.4:81789737-81789756 MS.gene71586:intron 60.0%
ACCACCACTAGGGTGGGGGT+GGG - chr1.4:81789707-81789726 None:intergenic 65.0%
CGCATATGCAGGGTCCGGGA+AGG - chr1.4:81792202-81792221 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG - chr1.4:81792187-81792206 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG - chr1.4:81792206-81792225 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG - chr1.4:81792207-81792226 None:intergenic 65.0%
TACCACCACTAGGGTGGGGG+TGG - chr1.4:81789708-81789727 None:intergenic 65.0%
CACCACTAGGGTGGGGGTGG+GGG - chr1.4:81789705-81789724 None:intergenic 70.0%
CCACCACTAGGGTGGGGGTG+GGG - chr1.4:81789706-81789725 None:intergenic 70.0%
! GTGGGGGTGGGGGTGTGTGT+GGG - chr1.4:81789695-81789714 None:intergenic 70.0%
! GTGGGGGTGTGTGTGGGGGA+GGG - chr1.4:81789689-81789708 None:intergenic 70.0%
! TGGGGGTGGGGGTGTGTGTG+GGG - chr1.4:81789694-81789713 None:intergenic 70.0%
! TGGGGGTGTGTGTGGGGGAG+GGG - chr1.4:81789688-81789707 None:intergenic 70.0%
CACCCCCACCCCCACCCTAG+TGG + chr1.4:81789700-81789719 MS.gene71586:intron 75.0%
CCCCACCCCCACCCTAGTGG+TGG + chr1.4:81789703-81789722 MS.gene71586:intron 75.0%
GGGGTGTGTGTGGGGGAGGG+GGG - chr1.4:81789686-81789705 None:intergenic 75.0%
! GGGGGTGGGGGTGTGTGTGG+GGG - chr1.4:81789693-81789712 None:intergenic 75.0%
! GGGGGTGTGTGTGGGGGAGG+GGG - chr1.4:81789687-81789706 None:intergenic 75.0%
! GGTGGGGGTGGGGGTGTGTG+TGG - chr1.4:81789696-81789715 None:intergenic 75.0%
! GGTGGGGGTGTGTGTGGGGG+AGG - chr1.4:81789690-81789709 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 81788764 81792832 81788764 ID=MS.gene71586
chr1.4 mRNA 81788764 81792832 81788764 ID=MS.gene71586.t1;Parent=MS.gene71586
chr1.4 exon 81788764 81789291 81788764 ID=MS.gene71586.t1.exon1;Parent=MS.gene71586.t1
chr1.4 CDS 81788764 81789291 81788764 ID=cds.MS.gene71586.t1;Parent=MS.gene71586.t1
chr1.4 exon 81789888 81789975 81789888 ID=MS.gene71586.t1.exon2;Parent=MS.gene71586.t1
chr1.4 CDS 81789888 81789975 81789888 ID=cds.MS.gene71586.t1;Parent=MS.gene71586.t1
chr1.4 exon 81790089 81790279 81790089 ID=MS.gene71586.t1.exon3;Parent=MS.gene71586.t1
chr1.4 CDS 81790089 81790279 81790089 ID=cds.MS.gene71586.t1;Parent=MS.gene71586.t1
chr1.4 exon 81790832 81790950 81790832 ID=MS.gene71586.t1.exon4;Parent=MS.gene71586.t1
chr1.4 CDS 81790832 81790950 81790832 ID=cds.MS.gene71586.t1;Parent=MS.gene71586.t1
chr1.4 exon 81791101 81791344 81791101 ID=MS.gene71586.t1.exon5;Parent=MS.gene71586.t1
chr1.4 CDS 81791101 81791344 81791101 ID=cds.MS.gene71586.t1;Parent=MS.gene71586.t1
chr1.4 exon 81791480 81791714 81791480 ID=MS.gene71586.t1.exon6;Parent=MS.gene71586.t1
chr1.4 CDS 81791480 81791714 81791480 ID=cds.MS.gene71586.t1;Parent=MS.gene71586.t1
chr1.4 exon 81792504 81792832 81792504 ID=MS.gene71586.t1.exon7;Parent=MS.gene71586.t1
chr1.4 CDS 81792504 81792832 81792504 ID=cds.MS.gene71586.t1;Parent=MS.gene71586.t1
Gene Sequence

>MS.gene71586

ATGGCCATGGTTTTGAAGTCAACAATGGCCGCTTCAAGCCTTGTGAGGAAATCCAGTATATCTGGAAACCCTTCACTTGATTTGAATCATCGTGTTTCAAATCTTGGATTCAAGGGAAAACAACATGTGGTCAAGGTTAGAGCAACAGTGGAAGTGGGTGGTTTGGAGGATTTAAAATTAAAAAGAAGAAGAAGCAATGTTGCATTGGAGGGAAGTTTGGGTTTGGATATGGTTTCAGAAGGAGAATTAATGGTGAAGGGTTTTAGAGGGTTGAGGAAGACAAAGCTTGTGTGTACTGTTGGTCCTGCTTGTAGTTCATTGGAGGATCTAGAGAAGTTGGCATTGGGAGGAATGAATGTTGCTAGGCTTAACATGTGTCATGGTACTAGAGAATGGCATCGTGATGTTATTAGGAAGATTAAGAAGCTTAATGACGAAAAGGGTTTCTCTGTTTCTGTTATGATTGATACTGAAGGTAGTCAGATTCATGTTGTTGATCATGGAGCACCTTCCTCGGTTAAAGTTGAGGTGATAATCTTACTTATAATTAGCATATGTTAGGGCCTCTCTGGATTGACTTATTTGAGCATATCTATCGGCATAATCACTCGTGACACCGTTTTTTGAAAACTTATGAAAACATATTATGGAGTTCATAAGTTGTTTTCAGCTTATTTCCATAAGTTCTCTATGATAGCTTATAAAATTAATTTGGCTTGGTTTTCCCTTGTTGTAGAAATAACTTATTCATAAGCACTTATGCTATAAGCTGCAAATTAATCTCCCAGGGATTGACTTGGTGGTGAAAGCTTGTGACCTAGGAGTGTGCTCCTCTCTAGGACTGAGGATGGAATCCTCCATTGGCCAACGATTCCTGTGTTAGGCCAGCCCATATAGAGCTTTGCTATGGCTTCAATTGCCCCCCTCCCCCACACACACCCCCACCCCCACCCTAGTGGTGGTATTGGTCTCTCGGATTAGCCGGTCATTGGGTGGGATACCGAGCTTTAAAAAAATAAGATGGTAGATAAGTTTTGCATCTAAACAGGGCCTAATAGTTTGTGATAGGCTGGTTTGTGTTTGAATTTGAATTGGGAACTTTCCAATTCTTGTTTCAATTTCAGGAAGATTCAATATGGTTGTTTACTGCTGAACATTTTGTGGGTTCTCGACCATTCACAGTTCAAGCAAACTATCCAGGTTTTTCTGCAGGTAGTAATATTTTGCTGAATGAGTAAAGAATTGATCAGTTCTTTTTCTTTTCCGATGAATATACATGTTATTATGCATTCAAGTGAATTCTGAATTTGGTTAATGATTGTCAGGTATTGAAGTAGGTGATGAAATTGTTATTGATGGTGGAATGGCATGCTTTGTTGTCATTGAAAAAACTGGAAATGATTTGCGTTGTAAGTGCATAGATGCTGGTCTTTTCTTACCCAGAGCCAAATGTAGTTTCTGGAGAGATGGAAAGCTTGTCAGGAGGAATTACAAGCTCCCCACTCTATCAACAAAGGTATATTTCGCTGCGAAGCGTCCTTTTTCCCGCACTTATTTTGTTAAGATCATGCAGGACAAATTTTTCATCCGGGACAGTTACTTCTATATGATGTGAACTGCTGCCAAAACCCCTGTTTGATATTTTTTTTTGTTGATCTGATGAAATAATATATATCAGTTCAAAAATTCACGTTCCATTTGTCAAGATAGTTAAATTGTATAATAATTGCTTACTAGACTTGTTTTTGACTAGTTTTCAATTGCTTCTTAGAGCTGTTCTAAAGAGCATGAATTACTGGTAGGCTTACCTTCAATTACCGAGTAAATGTTGCAAAGTCTTTCCCTTTTACAATTTTAGTATAATTATTTCTATACAAGTTTGATTGCCAAAATGATCAGTATAGCACACTAATAAGCTACTTTCTTCAGAGCTGAGCATTTCATATACTTAAATTATAATGATCTCTGAGTGAACTTTTTTCTTTTTTTTTTGGTATAATTCTTTGAATAGTGGCTAAGAATTTCAAATCTTTCCTTGATATGTTTTATCTTATAAATTTATCCACAGGATTGGGCTGATATAAACTTTGGTATAGCTGAGGGTGTTGATTTTTTTGCCCTATCCTTTGTCAACCATGCTGACTCTGTTAAGGATTTAAAGAACTACCTCTCTGGAAAATCAACCAAGTAAGGAAGCATAGACTCACCGAAGAATCATTTATACAGTTTATCAATATAATTTAGCCTTTTGTTCCTTTGAAAAGATGCTGATGTGTTTTCGTGCTTTAATTCAAAGTTATTTTAGCACAAATTAAGAATGTTAAATGGTACTTTCAGATCCATAAAAGTATTGGCAAAGATAGAAAGCTTAGAATCCATTCATAACCTGGAGGAAATAGTGAAAGCTTCTGACGGAATCATGGTAGCTCGAGGTGACCTTGGAGTCGAAATACCACTTGAGCAAATTCCTACAGTTCAGGAGGATATAATTCACATTTGCAGACAACAAAATAAGCCAGTGATTGTAGCTTCTCAGCTTCTTGAGTCAATGATTGAGTATCCAACACCAACTCGTGCCGAGGTAAAATCAATTTATACATCCACGATGATCATAAACATAGAGCAGAATTCCTATCTATGATAATAAGTTTTCTGTTTTCCTTTTGGAATGCCTAACTTACCTATTACAATAAATCTTCGCTTTTATGCAATAAAGGTAGCAGATATTTCTGAAGCAGTTCGACAGTACGCGGATGCTTTGATGTTGTCTGGTGAGTCAGCTATTGGTTCATTTGGACAGAAAGCACTGGCAGTGTTGGATATGACTAGCAGTAGAATGGAATCATGGAGTAGGGAGGAAAATAGACAAAGTCTTCTCAATCACCATAAACTTGGAGCATCATTGCCAGATTGCATCACTGAGCAAATATGCAACTGTGCTGTTGAAATGGGTAATTCACATTCCTTCTTGCCACCTGTAACTATATTAGTGCATGTATAGTTTCACTTTTGGGGAATTTGGATTGTGTGCGGTGTGACTACATGTGGTAGCCACATCTAGACTGTCCGATTATATTTTAATTCAGATTTTGATATTTTTTTTAATCTAAATTACCAAACATGAAATTTGAACTGTATGATTGTAATTGGAAGTCCAGATGTGGCTGGCTGTGTGCAGTCATGGGGTTGTGGCTACACACAACCCAAATTCAATTTTGAAAGACTTAAAAATTGATTTTGTTATGTTTGGGACTTCTCAATTGAAATTGATTTTTTCCTCCAAAATTCTTTCTAATTTGAAGCAAAGAGCGGTAACCTTGGCGCAACTGGTAAAGTTGTTGTCATGTGACTGAAAGGTCACGGGTTCAAGTCCTGAAAACAGTCTCTTGTGTAAAACATGGTAAGGCTGCGTACAATACACCAAATGGTGGGACCCCTTCCCGGACCCTGCATATGCGGGAGCTTTAGTGCACCGGGTTGCCTTTTTTTTTTTTTGAAGCAAAGATTTGTAGTTTTTACTCAAAACTTGACTTTTGCACTCAAATTTATTGTTCAACCGAACATAACCAAACATAAATCATTTATCTTAAGTTCACTTTTTAACTAAGATCAACTCTACAAAATCAATTGAATCAAAATATATTTTTGCCACAGTAAAATCAAATAGACACTTAACCTTGTTGCTATGAAATCTGCATAAGTAAATTATTGAAACTCACTCCTTTTGTGCCTGTCTGCAGCCAACAAACTTGGTGTGGATGCCATCTTTGTTTACACAAAGCATGGATACATGGCATCATTACTATCGCGCAATCGTCCAGATCCTCCCATCTTTGCTTTCACTGACGATGAAAGTACTCGAATGGCTCTGAATTTGCAATGGGGTGTTGTACCACTTCTTGTTGATTTATCAGATGATGCTGAATCAAACATCTCAAAATCTGTTCAGCTTATGAAATCTAAAGGATTGATCAACAAAGGAGATGTTGTTCTAGTGGTTTCAGATGTTGCTCCAACACGTTCAACTCCAATGGCTCTCCAATCAATTCAGGTTAAGACCATTATCTAG
Protein sequence

>MS.gene71586.t1

MAMVLKSTMAASSLVRKSSISGNPSLDLNHRVSNLGFKGKQHVVKVRATVEVGGLEDLKLKRRRSNVALEGSLGLDMVSEGELMVKGFRGLRKTKLVCTVGPACSSLEDLEKLALGGMNVARLNMCHGTREWHRDVIRKIKKLNDEKGFSVSVMIDTEGSQIHVVDHGAPSSVKVEEDSIWLFTAEHFVGSRPFTVQANYPGFSAGIEVGDEIVIDGGMACFVVIEKTGNDLRCKCIDAGLFLPRAKCSFWRDGKLVRRNYKLPTLSTKDWADINFGIAEGVDFFALSFVNHADSVKDLKNYLSGKSTKSIKVLAKIESLESIHNLEEIVKASDGIMVARGDLGVEIPLEQIPTVQEDIIHICRQQNKPVIVASQLLESMIEYPTPTRAEVADISEAVRQYADALMLSGESAIGSFGQKALAVLDMTSSRMESWSREENRQSLLNHHKLGASLPDCITEQICNCAVEMANKLGVDAIFVYTKHGYMASLLSRNRPDPPIFAFTDDESTRMALNLQWGVVPLLVDLSDDAESNISKSVQLMKSKGLINKGDVVLVVSDVAPTRSTPMALQSIQVKTII