AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71603

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71603.t1 MTR_1g106070 92.896 183 13 0 1 183 1 183 8.32e-126 352
MS.gene71603.t1 MTR_1g105920 90.110 182 18 0 1 182 1 182 2.70e-121 342
MS.gene71603.t1 MTR_1g105910 87.363 182 23 0 1 182 1 182 1.51e-117 333
MS.gene71603.t1 MTR_8g043650 87.363 182 23 0 1 182 1 182 3.43e-117 332
MS.gene71603.t1 MTR_3g052920 84.615 182 28 0 1 182 1 182 1.48e-115 328
MS.gene71603.t1 MTR_1g012570 85.714 182 26 0 1 182 1 182 1.50e-114 325
MS.gene71603.t1 MTR_2g030740 86.264 182 25 0 1 182 1 182 1.66e-114 325
MS.gene71603.t1 MTR_1g105905 80.000 165 33 0 18 182 1 165 3.47e-96 278
MS.gene71603.t1 MTR_1g108510 75.824 182 36 1 1 182 1 174 6.24e-96 278
MS.gene71603.t1 MTR_3g030770 76.374 182 35 1 1 182 1 174 7.77e-96 277
MS.gene71603.t1 MTR_3g052870 77.473 182 22 1 1 182 1 163 9.27e-96 277
MS.gene71603.t1 MTR_2g093190 74.176 182 39 1 1 182 1 174 1.40e-91 266
MS.gene71603.t1 MTR_1g108580 73.077 182 41 1 1 182 1 174 6.33e-91 265
MS.gene71603.t1 MTR_1g077360 69.231 182 56 0 1 182 1 182 1.09e-89 262
MS.gene71603.t1 MTR_5g045560 69.061 181 56 0 1 181 1 181 4.09e-88 258
MS.gene71603.t1 MTR_1g075600 68.681 182 57 0 1 182 1 182 4.29e-87 256
MS.gene71603.t1 MTR_0121s0080 70.330 182 54 0 1 182 1 182 1.68e-86 254
MS.gene71603.t1 MTR_2g085280 64.286 182 65 0 1 182 1 182 3.36e-83 246
MS.gene71603.t1 MTR_2g085250 64.286 182 65 0 1 182 1 182 3.59e-83 246
MS.gene71603.t1 MTR_5g055100 63.736 182 66 0 1 182 1 182 6.55e-83 245
MS.gene71603.t1 MTR_5g053390 67.582 182 59 0 1 182 1 182 8.24e-83 245
MS.gene71603.t1 MTR_7g062350 67.066 167 54 1 16 181 27 193 6.80e-74 223
MS.gene71603.t1 MTR_0121s0100 73.485 132 35 0 1 132 1 132 3.67e-67 201
MS.gene71603.t1 MTR_3g030780 70.455 132 39 0 1 132 1 132 6.52e-63 191
MS.gene71603.t1 MTR_3g080940 53.571 168 78 0 7 174 7 174 1.92e-62 192
MS.gene71603.t1 MTR_1g075570 58.788 165 54 1 18 182 1 151 4.71e-55 172
MS.gene71603.t1 MTR_3g067910 65.049 103 36 0 21 123 2 104 1.94e-44 143
MS.gene71603.t1 MTR_2g105290 37.572 173 98 2 5 174 8 173 6.60e-38 129
MS.gene71603.t1 MTR_8g086290 39.157 166 91 2 5 167 8 166 2.15e-36 125
MS.gene71603.t1 MTR_7g028448 41.290 155 79 2 5 159 8 150 2.08e-31 112
MS.gene71603.t1 MTR_4g036915 41.290 155 79 2 5 159 8 150 2.08e-31 112
MS.gene71603.t1 MTR_1g108500 58.654 104 22 1 22 125 110 192 4.29e-31 115
MS.gene71603.t1 MTR_4g127140 37.838 185 92 5 5 174 8 184 4.13e-29 106
MS.gene71603.t1 MTR_3g067875 80.357 56 11 0 18 73 1 56 2.17e-27 98.6
MS.gene71603.t1 MTR_1g047550 42.361 144 65 5 9 136 2 143 1.48e-26 99.8
MS.gene71603.t1 MTR_8g079502 45.545 101 53 1 9 109 2 100 2.47e-25 96.7
MS.gene71603.t1 MTR_1g054265 45.045 111 58 2 9 118 2 110 3.55e-25 95.9
MS.gene71603.t1 MTR_8g051580 45.545 101 53 1 9 109 2 100 4.44e-25 96.3
MS.gene71603.t1 MTR_1g063160 46.602 103 53 2 9 109 2 104 2.50e-24 94.0
MS.gene71603.t1 MTR_8g046350 39.394 132 68 3 9 135 2 126 4.09e-24 93.2
MS.gene71603.t1 MTR_4g131030 53.425 73 34 0 9 81 2 74 1.90e-23 92.8
MS.gene71603.t1 MTR_3g067915 62.687 67 25 0 60 126 30 96 3.29e-23 88.6
MS.gene71603.t1 MTR_3g067870 67.213 61 20 0 16 76 83 143 5.58e-23 90.1
MS.gene71603.t1 MTR_4g094632 39.823 113 65 2 9 120 2 112 6.28e-22 87.4
MS.gene71603.t1 MTR_1g053070 37.086 151 78 4 9 157 2 137 1.94e-19 82.8
MS.gene71603.t1 MTR_4g093970 32.919 161 92 3 10 160 29 183 5.01e-19 81.6
MS.gene71603.t1 MTR_4g094638 40.566 106 62 1 9 113 2 107 5.62e-19 80.1
MS.gene71603.t1 MTR_3g005530 50.000 68 34 0 9 76 2 69 3.22e-18 79.3
MS.gene71603.t1 MTR_5g032520 37.121 132 71 4 10 131 3 132 1.11e-17 77.8
MS.gene71603.t1 MTR_4g102530 48.611 72 37 0 10 81 3 74 1.18e-17 77.4
MS.gene71603.t1 MTR_5g032150 36.364 132 72 4 10 131 3 132 2.13e-17 77.0
MS.gene71603.t1 MTR_8g033220 32.941 170 95 6 10 166 3 166 2.37e-17 77.0
MS.gene71603.t1 MTR_8g033220 32.941 170 95 6 10 166 3 166 2.65e-17 77.0
MS.gene71603.t1 MTR_3g452380 48.649 74 38 0 3 76 11 84 2.71e-17 77.0
MS.gene71603.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 2.76e-17 76.6
MS.gene71603.t1 MTR_2g017865 40.385 104 61 1 9 112 17 119 2.80e-17 77.4
MS.gene71603.t1 MTR_8g033270 31.737 167 100 4 9 167 2 162 6.05e-17 76.3
MS.gene71603.t1 MTR_7g075870 37.273 110 67 1 10 119 3 110 1.21e-16 74.7
MS.gene71603.t1 MTR_8g087860 48.529 68 35 0 9 76 18 85 4.90e-16 73.6
MS.gene71603.t1 MTR_3g102570 40.196 102 58 3 9 109 2 101 5.21e-16 74.7
MS.gene71603.t1 MTR_0003s0590 50.000 68 34 0 9 76 2 69 6.50e-16 73.6
MS.gene71603.t1 MTR_4g109830 44.928 69 37 1 9 76 2 70 8.47e-16 72.8
MS.gene71603.t1 MTR_1g101970 47.059 68 36 0 9 76 2 69 8.78e-16 72.0
MS.gene71603.t1 MTR_2g009890 47.059 68 36 0 9 76 2 69 1.28e-15 73.2
MS.gene71603.t1 MTR_6g464720 46.377 69 36 1 9 76 2 70 1.76e-15 72.4
MS.gene71603.t1 MTR_7g075870 36.937 111 67 2 10 119 3 111 2.73e-15 71.2
MS.gene71603.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 5.74e-15 70.5
MS.gene71603.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 6.12e-15 70.5
MS.gene71603.t1 MTR_8g022970 32.704 159 92 4 8 159 17 167 8.34e-15 69.3
MS.gene71603.t1 MTR_6g015975 46.377 69 36 1 9 76 2 70 1.04e-14 70.1
MS.gene71603.t1 MTR_4g084740 44.737 76 40 2 9 83 2 76 1.30e-14 70.9
MS.gene71603.t1 MTR_7g016600 46.377 69 36 1 9 76 2 70 1.74e-14 69.7
MS.gene71603.t1 MTR_7g016630 42.029 69 39 1 9 76 2 70 2.54e-14 69.3
MS.gene71603.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 3.16e-14 68.6
MS.gene71603.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 3.17e-14 68.6
MS.gene71603.t1 MTR_2g461710 51.786 56 27 0 9 64 2 57 3.86e-14 64.3
MS.gene71603.t1 MTR_5g046790 42.254 71 38 1 9 79 2 69 3.96e-14 68.2
MS.gene71603.t1 MTR_5g066960 45.763 59 32 0 9 67 2 60 6.69e-14 63.5
MS.gene71603.t1 MTR_8g066260 43.662 71 37 1 9 79 2 69 7.79e-14 67.8
MS.gene71603.t1 MTR_3g437790 32.867 143 79 4 26 159 30 164 8.71e-14 66.6
MS.gene71603.t1 MTR_5g046870 44.928 69 37 1 9 76 2 70 8.81e-14 64.7
MS.gene71603.t1 MTR_1g038300 45.714 70 36 1 9 76 2 71 1.36e-13 67.0
MS.gene71603.t1 MTR_4g036050 30.657 137 83 5 10 136 3 137 2.16e-13 65.5
MS.gene71603.t1 MTR_1g029670 45.455 66 35 1 9 74 2 66 2.38e-13 65.5
MS.gene71603.t1 MTR_4g036050 30.189 159 98 6 10 158 3 158 2.49e-13 65.5
MS.gene71603.t1 MTR_4g036050 30.435 138 84 5 9 136 2 137 2.70e-13 65.5
MS.gene71603.t1 MTR_3g088615 41.429 70 39 1 9 76 2 71 2.71e-13 65.1
MS.gene71603.t1 MTR_7g075850 29.762 168 103 6 9 167 2 163 3.72e-13 65.9
MS.gene71603.t1 MTR_4g036050 30.435 138 84 5 9 136 2 137 3.99e-13 65.1
MS.gene71603.t1 MTR_3g084980 51.786 56 27 0 9 64 2 57 7.35e-13 65.1
MS.gene71603.t1 MTR_4g109810 48.214 56 29 0 9 64 2 57 1.18e-12 64.3
MS.gene71603.t1 MTR_8g097090 50.000 56 28 0 9 64 2 57 1.29e-12 64.3
MS.gene71603.t1 MTR_3g113030 42.857 70 38 1 9 76 2 71 1.33e-12 64.3
MS.gene71603.t1 MTR_4g108720 32.558 129 82 4 9 134 2 128 1.62e-12 65.1
MS.gene71603.t1 MTR_4g051538 43.902 82 46 0 1 82 1 82 4.01e-12 62.8
MS.gene71603.t1 MTR_3g109930 30.000 140 82 4 27 159 20 150 4.70e-12 61.6
MS.gene71603.t1 MTR_4g093030 45.902 61 33 0 9 69 2 62 3.88e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71603.t1 AT5G60440 56.000 175 74 2 5 176 3 177 3.05e-60 189
MS.gene71603.t1 AT2G24840 49.390 164 72 5 6 163 60 218 1.76e-44 148
MS.gene71603.t1 AT1G65360 39.884 173 99 3 5 175 3 172 8.90e-39 132
MS.gene71603.t1 AT4G36590 45.732 164 79 3 5 160 3 164 7.04e-38 130
MS.gene71603.t1 AT1G01530 45.679 162 81 3 4 162 2 159 2.24e-37 129
MS.gene71603.t1 AT2G34440 43.363 113 63 1 9 121 2 113 3.03e-27 101
MS.gene71603.t1 AT3G66656 41.732 127 70 1 9 131 2 128 1.78e-25 97.1
MS.gene71603.t1 AT3G04100 31.902 163 105 3 2 159 7 168 7.70e-24 93.6
MS.gene71603.t1 AT1G72350 54.795 73 31 1 9 81 43 113 3.14e-22 89.7
MS.gene71603.t1 AT1G28460 31.214 173 109 3 5 174 4 169 3.92e-20 83.2
MS.gene71603.t1 AT4G22950 35.220 159 95 4 10 165 3 156 5.50e-20 82.8
MS.gene71603.t1 AT4G22950 35.220 159 95 4 10 165 3 156 2.50e-19 82.0
MS.gene71603.t1 AT4G22950 35.220 159 95 4 10 165 3 156 2.50e-19 82.0
MS.gene71603.t1 AT4G09960 45.349 86 46 1 9 93 2 87 4.29e-19 81.3
MS.gene71603.t1 AT4G09960 45.349 86 46 1 9 93 2 87 4.40e-19 81.6
MS.gene71603.t1 AT4G09960 45.349 86 46 1 9 93 3 88 4.82e-19 81.6
MS.gene71603.t1 AT1G29962 30.233 172 113 4 5 169 4 175 4.82e-19 80.5
MS.gene71603.t1 AT4G09960 45.349 86 46 1 9 93 12 97 5.92e-19 81.6
MS.gene71603.t1 AT2G45660 51.471 68 33 0 10 77 3 70 6.86e-19 79.3
MS.gene71603.t1 AT4G09960 45.349 86 46 1 9 93 28 113 7.11e-19 81.6
MS.gene71603.t1 AT4G24540 35.135 148 79 4 9 156 2 132 1.25e-18 80.1
MS.gene71603.t1 AT4G09960 45.349 86 46 1 9 93 97 182 1.39e-18 82.0
MS.gene71603.t1 AT2G45660 51.471 68 33 0 10 77 3 70 2.33e-18 79.3
MS.gene71603.t1 AT2G45650 50.000 68 34 0 9 76 2 69 9.07e-18 78.6
MS.gene71603.t1 AT3G61120 31.677 161 92 5 9 160 2 153 1.61e-17 77.8
MS.gene71603.t1 AT5G13790 43.011 93 44 1 9 101 2 85 5.60e-17 76.6
MS.gene71603.t1 AT4G18960 43.956 91 49 2 5 94 15 104 5.68e-17 76.3
MS.gene71603.t1 AT2G22540 50.746 67 33 0 10 76 3 69 6.23e-17 76.3
MS.gene71603.t1 AT2G22540 50.746 67 33 0 10 76 3 69 6.23e-17 76.3
MS.gene71603.t1 AT3G57230 45.588 68 37 0 9 76 2 69 6.34e-17 73.9
MS.gene71603.t1 AT5G51870 52.239 67 32 0 10 76 3 69 1.50e-16 73.6
MS.gene71603.t1 AT5G51870 52.239 67 32 0 10 76 3 69 1.62e-16 74.3
MS.gene71603.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.05e-16 73.2
MS.gene71603.t1 AT5G51870 52.239 67 32 0 10 76 3 69 2.74e-16 73.9
MS.gene71603.t1 AT5G51870 52.239 67 32 0 10 76 13 79 2.96e-16 73.9
MS.gene71603.t1 AT5G51870 48.611 72 37 0 5 76 21 92 3.26e-16 73.2
MS.gene71603.t1 AT3G57390 48.529 68 35 0 9 76 2 69 3.42e-16 73.9
MS.gene71603.t1 AT2G42830 48.529 68 35 0 9 76 17 84 3.50e-16 74.3
MS.gene71603.t1 AT5G62165 47.761 67 35 0 10 76 3 69 3.51e-16 70.9
MS.gene71603.t1 AT5G10140 50.725 69 33 1 9 76 2 70 3.53e-16 73.2
MS.gene71603.t1 AT4G37940 47.059 68 36 0 9 76 2 69 3.58e-16 73.9
MS.gene71603.t1 AT3G30260 28.916 166 100 4 9 173 2 150 3.68e-16 74.3
MS.gene71603.t1 AT4G37940 47.059 68 36 0 9 76 2 69 3.73e-16 72.8
MS.gene71603.t1 AT4G37940 47.059 68 36 0 9 76 2 69 3.78e-16 73.6
MS.gene71603.t1 AT5G62165 47.761 67 35 0 10 76 3 69 3.81e-16 72.4
MS.gene71603.t1 AT5G62165 47.761 67 35 0 10 76 3 69 3.81e-16 72.4
MS.gene71603.t1 AT5G62165 47.761 67 35 0 10 76 3 69 3.81e-16 72.4
MS.gene71603.t1 AT2G42830 48.529 68 35 0 9 76 17 84 3.90e-16 73.9
MS.gene71603.t1 AT5G10140 50.725 69 33 1 9 76 2 70 4.29e-16 72.8
MS.gene71603.t1 AT1G17310 51.899 79 36 1 8 86 47 123 4.31e-16 73.6
MS.gene71603.t1 AT1G28450 28.402 169 111 4 5 163 4 172 4.60e-16 72.8
MS.gene71603.t1 AT3G57230 45.588 68 37 0 9 76 2 69 4.65e-16 73.6
MS.gene71603.t1 AT3G57230 45.588 68 37 0 9 76 2 69 4.65e-16 73.6
MS.gene71603.t1 AT5G10140 50.725 69 33 1 9 76 2 70 4.68e-16 72.8
MS.gene71603.t1 AT4G11880 47.222 72 37 1 10 80 3 74 4.88e-16 72.4
MS.gene71603.t1 AT4G11880 47.222 72 37 1 10 80 3 74 4.88e-16 72.4
MS.gene71603.t1 AT1G17310 51.899 79 36 1 8 86 58 134 5.25e-16 73.6
MS.gene71603.t1 AT5G13790 50.000 68 34 0 9 76 2 69 5.70e-16 73.9
MS.gene71603.t1 AT3G58780 47.887 71 37 0 6 76 14 84 6.07e-16 73.6
MS.gene71603.t1 AT3G58780 47.887 71 37 0 6 76 20 90 6.57e-16 73.6
MS.gene71603.t1 AT5G62165 47.761 67 35 0 10 76 3 69 6.57e-16 71.6
MS.gene71603.t1 AT5G62165 47.761 67 35 0 10 76 3 69 6.57e-16 71.6
MS.gene71603.t1 AT5G62165 47.761 67 35 0 10 76 3 69 6.57e-16 71.6
MS.gene71603.t1 AT5G62165 47.761 67 35 0 10 76 3 69 6.57e-16 71.6
MS.gene71603.t1 AT5G62165 47.761 67 35 0 10 76 3 69 6.57e-16 71.6
MS.gene71603.t1 AT3G57390 48.529 68 35 0 9 76 2 69 7.47e-16 73.6
MS.gene71603.t1 AT4G11880 47.222 72 37 1 10 80 3 74 9.50e-16 72.4
MS.gene71603.t1 AT4G11880 47.222 72 37 1 10 80 3 74 9.50e-16 72.4
MS.gene71603.t1 AT3G58780 47.887 71 37 0 6 76 14 84 1.04e-15 73.6
MS.gene71603.t1 AT5G51860 50.746 67 33 0 10 76 3 69 1.18e-15 72.0
MS.gene71603.t1 AT5G62165 47.761 67 35 0 10 76 3 69 1.54e-15 71.6
MS.gene71603.t1 AT5G62165 47.761 67 35 0 10 76 3 69 1.54e-15 71.6
MS.gene71603.t1 AT5G62165 47.761 67 35 0 10 76 3 69 1.57e-15 71.6
MS.gene71603.t1 AT5G62165 47.761 67 35 0 10 76 3 69 1.57e-15 71.6
MS.gene71603.t1 AT5G62165 47.761 67 35 0 10 76 3 69 1.57e-15 71.6
MS.gene71603.t1 AT5G51860 50.746 67 33 0 10 76 3 69 1.63e-15 71.6
MS.gene71603.t1 AT2G22630 45.588 68 37 0 9 76 2 69 2.43e-15 71.6
MS.gene71603.t1 AT2G22630 45.588 68 37 0 9 76 2 69 2.43e-15 71.6
MS.gene71603.t1 AT1G77950 43.421 76 41 2 9 83 2 76 2.94e-15 71.6
MS.gene71603.t1 AT1G77950 43.421 76 41 2 9 83 2 76 2.94e-15 71.6
MS.gene71603.t1 AT1G77950 43.421 76 41 2 9 83 2 76 2.94e-15 71.6
MS.gene71603.t1 AT1G77950 43.421 76 41 2 9 83 2 76 2.94e-15 71.6
MS.gene71603.t1 AT1G77980 46.479 71 37 1 9 78 2 72 3.47e-15 72.4
MS.gene71603.t1 AT1G22130 44.737 76 40 2 9 83 2 76 8.10e-15 71.6
MS.gene71603.t1 AT5G65050 46.377 69 36 1 9 76 2 70 8.51e-15 69.3
MS.gene71603.t1 AT5G60910 46.479 71 35 1 9 79 2 69 8.71e-15 70.5
MS.gene71603.t1 AT2G22540 56.364 55 24 0 10 64 3 57 1.11e-14 70.1
MS.gene71603.t1 AT2G14210 44.928 69 37 1 9 76 2 70 1.23e-14 69.7
MS.gene71603.t1 AT1G71692 44.928 69 37 1 10 77 3 71 1.48e-14 69.3
MS.gene71603.t1 AT2G14210 44.928 69 37 1 9 76 2 70 1.50e-14 69.7
MS.gene71603.t1 AT1G47760 33.333 126 67 4 9 131 2 113 1.52e-14 68.6
MS.gene71603.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.15e-14 68.6
MS.gene71603.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.28e-14 68.2
MS.gene71603.t1 AT3G54340 44.286 70 37 1 9 76 2 71 2.42e-14 68.9
MS.gene71603.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.63e-14 67.8
MS.gene71603.t1 AT1G26310 44.928 69 37 1 9 76 2 70 2.80e-14 69.3
MS.gene71603.t1 AT1G69120 38.462 91 53 1 9 99 2 89 2.99e-14 68.9
MS.gene71603.t1 AT5G20240 44.286 70 37 1 9 76 2 71 3.03e-14 67.0
MS.gene71603.t1 AT5G20240 44.286 70 37 1 9 76 2 71 3.39e-14 68.2
MS.gene71603.t1 AT5G65060 46.377 69 36 1 9 76 2 70 3.91e-14 67.8
MS.gene71603.t1 AT5G15800 46.377 69 36 1 9 76 2 70 4.21e-14 68.6
MS.gene71603.t1 AT5G23260 44.086 93 44 3 5 89 12 104 4.31e-14 68.9
MS.gene71603.t1 AT5G23260 44.086 93 44 3 5 89 12 104 4.71e-14 68.6
MS.gene71603.t1 AT1G69120 38.462 91 53 1 9 99 2 89 5.24e-14 68.6
MS.gene71603.t1 AT5G65060 46.377 69 36 1 9 76 2 70 5.74e-14 67.0
MS.gene71603.t1 AT5G65060 46.377 69 36 1 9 76 2 70 6.51e-14 67.0
MS.gene71603.t1 AT5G23260 43.678 87 43 2 9 89 2 88 6.76e-14 67.8
MS.gene71603.t1 AT5G15800 46.377 69 36 1 9 76 2 70 6.78e-14 68.2
MS.gene71603.t1 AT5G23260 43.678 87 43 2 9 89 2 88 6.86e-14 68.2
MS.gene71603.t1 AT3G02310 44.928 69 37 1 9 76 2 70 1.99e-13 65.9
MS.gene71603.t1 AT2G03710 44.286 70 37 2 9 76 2 71 2.41e-13 65.5
MS.gene71603.t1 AT3G58780 49.180 61 31 0 6 66 14 74 2.63e-13 66.2
MS.gene71603.t1 AT3G58780 49.180 61 31 0 6 66 14 74 3.43e-13 66.2
MS.gene71603.t1 AT5G65070 42.029 69 39 1 9 76 2 70 3.63e-13 63.9
MS.gene71603.t1 AT5G65070 42.029 69 39 1 9 76 2 70 7.20e-13 64.3
MS.gene71603.t1 AT1G24260 50.000 56 28 0 9 64 2 57 7.97e-13 65.1
MS.gene71603.t1 AT1G24260 50.000 56 28 0 9 64 2 57 8.22e-13 65.1
MS.gene71603.t1 AT1G24260 50.000 56 28 0 9 64 2 57 8.54e-13 64.7
MS.gene71603.t1 AT2G03710 44.286 70 37 2 9 76 2 71 8.55e-13 65.1
MS.gene71603.t1 AT2G03710 44.286 70 37 2 9 76 2 71 9.08e-13 65.1
MS.gene71603.t1 AT3G02310 44.928 69 37 1 9 76 2 70 1.18e-12 64.7
MS.gene71603.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.35e-12 64.3
MS.gene71603.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.72e-12 63.5
MS.gene71603.t1 AT5G65080 28.646 192 109 6 9 182 9 190 4.15e-12 62.4
MS.gene71603.t1 AT1G46408 35.294 119 68 4 10 119 5 123 5.02e-12 63.2
MS.gene71603.t1 AT4G37435 38.889 72 43 1 9 79 2 73 5.60e-12 61.6
MS.gene71603.t1 AT1G69540 34.234 111 63 3 9 117 2 104 6.68e-12 63.2
MS.gene71603.t1 AT5G65070 47.368 57 30 0 9 65 2 58 6.72e-12 62.4
MS.gene71603.t1 AT1G69540 34.234 111 63 3 9 117 2 104 8.36e-12 63.2
MS.gene71603.t1 AT1G18750 31.008 129 84 4 9 134 2 128 8.64e-12 63.2
MS.gene71603.t1 AT1G18750 31.008 129 84 4 9 134 2 128 9.82e-12 62.8
MS.gene71603.t1 AT5G49490 38.462 78 44 1 5 78 41 118 1.16e-11 62.4
MS.gene71603.t1 AT1G18750 31.707 123 78 5 9 127 2 122 2.39e-11 61.6
MS.gene71603.t1 AT2G26320 40.000 70 40 1 9 76 18 87 2.41e-11 58.5
MS.gene71603.t1 AT5G49420 35.106 94 54 2 5 91 3 96 2.43e-11 61.6
MS.gene71603.t1 AT5G65080 47.273 55 29 0 9 63 9 63 5.00e-11 59.7

Find 46 sgRNAs with CRISPR-Local

Find 55 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCGATCGAGGCTCAATTT+TGG 0.244880 1.4:+82078542 MS.gene71603:CDS
ATTGCATGGTACCATTGTTT+TGG 0.334587 1.4:-82078405 None:intergenic
GTCCCGTTGATGGGATGAAC+AGG 0.345518 1.4:+82078572 MS.gene71603:CDS
TGAATTATTCAAGAAGGCTT+TGG 0.346261 1.4:+82078603 MS.gene71603:CDS
GGTGGTTGATCTGAGTTAGA+TGG 0.362826 1.4:-82078471 None:intergenic
CTCTCGTTGTTTACTCACCT+GGG 0.364999 1.4:+82078311 MS.gene71603:CDS
GCTCTCGTTGTTTACTCACC+TGG 0.366410 1.4:+82078310 MS.gene71603:CDS
TGGTTGGCTGGTCCCGTTGA+TGG 0.369709 1.4:+82078562 MS.gene71603:CDS
AACTCAGATCAACCACCTAT+TGG 0.378745 1.4:+82078477 MS.gene71603:CDS
TTGTTGCACATCATGCTGAT+AGG 0.402994 1.4:+82078641 MS.gene71603:CDS
TCTATGACTGTATCAACATT+GGG 0.407875 1.4:-82078358 None:intergenic
CTTCTTGAATAATTCAAGTT+GGG 0.442228 1.4:-82078596 None:intergenic
GTTTCTTCTCGATGTCCAAT+AGG 0.442800 1.4:-82078492 None:intergenic
CCTTCTTGAATAATTCAAGT+TGG 0.480564 1.4:-82078597 None:intergenic
GCCCTGTTCATCCCATCAAC+GGG 0.488608 1.4:-82078574 None:intergenic
GGTTGGCTGGTCCCGTTGAT+GGG 0.490762 1.4:+82078563 MS.gene71603:CDS
ATCTATGACTGTATCAACAT+TGG 0.494357 1.4:-82078359 None:intergenic
GGCCCTGTTCATCCCATCAA+CGG 0.495905 1.4:-82078575 None:intergenic
GGTGCTACGGTGAGCCTCAA+TGG 0.498329 1.4:-82078428 None:intergenic
CCAACTTGAATTATTCAAGA+AGG 0.499244 1.4:+82078597 MS.gene71603:CDS
GTGGTTGATCTGAGTTAGAT+GGG 0.506455 1.4:-82078470 None:intergenic
ATTATTCAAGAAGGCTTTGG+AGG 0.515397 1.4:+82078606 MS.gene71603:CDS
ACAGAGGGTGCAAAGCTCAC+TGG 0.525840 1.4:-82078275 None:intergenic
GCTCACGCACGTTGGTGCTA+CGG 0.531315 1.4:-82078441 None:intergenic
TGTTTACTCACCTGGGGAGA+AGG 0.536541 1.4:+82078318 MS.gene71603:CDS
GGGTTTGAGTCGGAGCACTC+TGG 0.547465 1.4:-82078672 None:intergenic
CTTCAATCATGTCGAGTGGA+AGG 0.559861 1.4:+82078152 None:intergenic
TCTTCTCGATGTCCAATAGG+TGG 0.584648 1.4:-82078489 None:intergenic
AGTGAGCTTTGCACCCTCTG+TGG 0.587031 1.4:+82078277 MS.gene71603:CDS
AATGAAAATACCTTCTCCCC+AGG 0.587583 1.4:-82078328 None:intergenic
AGCAACATCTGCACCACAGA+GGG 0.595144 1.4:-82078290 None:intergenic
TCCCGTTGATGGGATGAACA+GGG 0.598148 1.4:+82078573 MS.gene71603:CDS
GTGAGCCTCAATGGATTGCA+TGG 0.605254 1.4:-82078419 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 1.4:-82078252 None:intergenic
TCTCGTTGTTTACTCACCTG+GGG 0.615216 1.4:+82078312 MS.gene71603:CDS
TGGTACCATGCAATCCATTG+AGG 0.616175 1.4:+82078414 MS.gene71603:CDS
CCTCGATCGATTTACGCAAG+TGG 0.621044 1.4:-82078531 None:intergenic
AAGAGAGGAAGGGTTTGAGT+CGG 0.627044 1.4:-82078682 None:intergenic
TGTGCTTCAATCATGTCGAG+TGG 0.638522 1.4:+82078148 None:intergenic
CGAGTCCCATCCCAAAACAA+TGG 0.652120 1.4:+82078394 MS.gene71603:CDS
CCACTTGCGTAAATCGATCG+AGG 0.678429 1.4:+82078531 MS.gene71603:CDS
TGACTGTATCAACATTGGGG+TGG 0.679569 1.4:-82078354 None:intergenic
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 1.4:+82078163 MS.gene71603:CDS
CTATGACTGTATCAACATTG+GGG 0.696683 1.4:-82078357 None:intergenic
GGTATTAAGCTCACGCACGT+TGG 0.704138 1.4:-82078449 None:intergenic
GAGCAACATCTGCACCACAG+AGG 0.729838 1.4:-82078291 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG - chr1.4:82078192-82078211 None:intergenic 20.0%
!! CTTCTTGAATAATTCAAGTT+GGG - chr1.4:82078599-82078618 None:intergenic 25.0%
ATCTATGACTGTATCAACAT+TGG - chr1.4:82078362-82078381 None:intergenic 30.0%
CCAACTTGAATTATTCAAGA+AGG + chr1.4:82078597-82078616 MS.gene71603:CDS 30.0%
CCTTCTTGAATAATTCAAGT+TGG - chr1.4:82078600-82078619 None:intergenic 30.0%
TCTATGACTGTATCAACATT+GGG - chr1.4:82078361-82078380 None:intergenic 30.0%
TGAATTATTCAAGAAGGCTT+TGG + chr1.4:82078603-82078622 MS.gene71603:CDS 30.0%
CTATGACTGTATCAACATTG+GGG - chr1.4:82078360-82078379 None:intergenic 35.0%
! ATTATTCAAGAAGGCTTTGG+AGG + chr1.4:82078606-82078625 MS.gene71603:CDS 35.0%
! ATTGCATGGTACCATTGTTT+TGG - chr1.4:82078408-82078427 None:intergenic 35.0%
! TTGCATGGTACCATTGTTTT+GGG - chr1.4:82078407-82078426 None:intergenic 35.0%
AACTCAGATCAACCACCTAT+TGG + chr1.4:82078477-82078496 MS.gene71603:CDS 40.0%
AATGAAAATACCTTCTCCCC+AGG - chr1.4:82078331-82078350 None:intergenic 40.0%
GTGGTTGATCTGAGTTAGAT+GGG - chr1.4:82078473-82078492 None:intergenic 40.0%
GTTTCTTCTCGATGTCCAAT+AGG - chr1.4:82078495-82078514 None:intergenic 40.0%
TCGAAAAAGTCACTTGCAAG+TGG - chr1.4:82078228-82078247 None:intergenic 40.0%
TTGTTGCACATCATGCTGAT+AGG + chr1.4:82078641-82078660 MS.gene71603:CDS 40.0%
! AATCGATCGAGGCTCAATTT+TGG + chr1.4:82078542-82078561 MS.gene71603:CDS 40.0%
!!! ATGGTACCATTGTTTTGGGA+TGG - chr1.4:82078403-82078422 None:intergenic 40.0%
!!! GGGGAGAAGGTATTTTCATT+TGG + chr1.4:82078331-82078350 MS.gene71603:CDS 40.0%
!!! TGGTACCATTGTTTTGGGAT+GGG - chr1.4:82078402-82078421 None:intergenic 40.0%
AAGAGAGGAAGGGTTTGAGT+CGG - chr1.4:82078685-82078704 None:intergenic 45.0%
CTCTCGTTGTTTACTCACCT+GGG + chr1.4:82078311-82078330 MS.gene71603:CDS 45.0%
CTTTCTTGAAGAGCCCACTA+CGG - chr1.4:82078255-82078274 None:intergenic 45.0%
GGTGGTTGATCTGAGTTAGA+TGG - chr1.4:82078474-82078493 None:intergenic 45.0%
TCTCGTTGTTTACTCACCTG+GGG + chr1.4:82078312-82078331 MS.gene71603:CDS 45.0%
TCTTCTCGATGTCCAATAGG+TGG - chr1.4:82078492-82078511 None:intergenic 45.0%
TGACTGTATCAACATTGGGG+TGG - chr1.4:82078357-82078376 None:intergenic 45.0%
TGGTACCATGCAATCCATTG+AGG + chr1.4:82078414-82078433 MS.gene71603:CDS 45.0%
! TCTCAATCTTTTGGCGACCT+CGG - chr1.4:82078183-82078202 None:intergenic 45.0%
!! GATCGAGGCTCAATTTTGGT+TGG + chr1.4:82078546-82078565 MS.gene71603:CDS 45.0%
AGCAACATCTGCACCACAGA+GGG - chr1.4:82078293-82078312 None:intergenic 50.0%
CCACTTGCGTAAATCGATCG+AGG + chr1.4:82078531-82078550 MS.gene71603:CDS 50.0%
CGAGTCCCATCCCAAAACAA+TGG + chr1.4:82078394-82078413 MS.gene71603:CDS 50.0%
GCTCTCGTTGTTTACTCACC+TGG + chr1.4:82078310-82078329 MS.gene71603:CDS 50.0%
GGTATTAAGCTCACGCACGT+TGG - chr1.4:82078452-82078471 None:intergenic 50.0%
TGTTTACTCACCTGGGGAGA+AGG + chr1.4:82078318-82078337 MS.gene71603:CDS 50.0%
! CCTCGATCGATTTACGCAAG+TGG - chr1.4:82078534-82078553 None:intergenic 50.0%
! TCCCGTTGATGGGATGAACA+GGG + chr1.4:82078573-82078592 MS.gene71603:CDS 50.0%
!! GTGAGCCTCAATGGATTGCA+TGG - chr1.4:82078422-82078441 None:intergenic 50.0%
!!! ACTTTTTCGAAGCGCCGTAG+TGG + chr1.4:82078238-82078257 MS.gene71603:CDS 50.0%
!!! CTTTTTCGAAGCGCCGTAGT+GGG + chr1.4:82078239-82078258 MS.gene71603:CDS 50.0%
!!! GAGGCTCAATTTTGGTTGGC+TGG + chr1.4:82078550-82078569 MS.gene71603:CDS 50.0%
AGTGAGCTTTGCACCCTCTG+TGG + chr1.4:82078277-82078296 MS.gene71603:CDS 55.0%
GAGCAACATCTGCACCACAG+AGG - chr1.4:82078294-82078313 None:intergenic 55.0%
GCCCTGTTCATCCCATCAAC+GGG - chr1.4:82078577-82078596 None:intergenic 55.0%
GGCCCTGTTCATCCCATCAA+CGG - chr1.4:82078578-82078597 None:intergenic 55.0%
TCGAGTGGAAGGAAAAGCCG+AGG + chr1.4:82078163-82078182 MS.gene71603:CDS 55.0%
! ACAGAGGGTGCAAAGCTCAC+TGG - chr1.4:82078278-82078297 None:intergenic 55.0%
! GTCCCGTTGATGGGATGAAC+AGG + chr1.4:82078572-82078591 MS.gene71603:CDS 55.0%
! GGGTTTGAGTCGGAGCACTC+TGG - chr1.4:82078675-82078694 None:intergenic 60.0%
! GGTGCTACGGTGAGCCTCAA+TGG - chr1.4:82078431-82078450 None:intergenic 60.0%
! GGTTGGCTGGTCCCGTTGAT+GGG + chr1.4:82078563-82078582 MS.gene71603:CDS 60.0%
! TGGTTGGCTGGTCCCGTTGA+TGG + chr1.4:82078562-82078581 MS.gene71603:CDS 60.0%
!! GCTCACGCACGTTGGTGCTA+CGG - chr1.4:82078444-82078463 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 82078160 82078711 82078160 ID=MS.gene71603
chr1.4 mRNA 82078160 82078711 82078160 ID=MS.gene71603.t1;Parent=MS.gene71603
chr1.4 exon 82078160 82078711 82078160 ID=MS.gene71603.t1.exon1;Parent=MS.gene71603.t1
chr1.4 CDS 82078160 82078711 82078160 ID=cds.MS.gene71603.t1;Parent=MS.gene71603.t1
Gene Sequence

>MS.gene71603

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCCACTTGCAAGTGACTTTTTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTACTCACCTGGGGAGAAGGTATTTTCATTTGGCCACCCCAATGTTGATACAGTCATAGATCGTTATCTCTCTCGAGTCCCATCCCAAAACAATGGTACCATGCAATCCATTGAGGCTCACCGTAGCACCAACGTGCGTGAGCTTAATACCCATCTAACTCAGATCAACCACCTATTGGACATCGAGAAGAAACGTGCTGAAGAGTTGAGCCACTTGCGTAAATCGATCGAGGCTCAATTTTGGTTGGCTGGTCCCGTTGATGGGATGAACAGGGCCCAACTTGAATTATTCAAGAAGGCTTTGGAGGAGCTTAAGAAACTTGTTGCACATCATGCTGATAGGCTTGTAATCCAGAGTGCTCCGACTCAAACCCTTCCTCTCTTTTTTTGA
Protein sequence

>MS.gene71603.t1

MSSGRKSRGRQKIEMKKMSNESHLQVTFSKRRSGLFKKASELCTLCGADVALVVYSPGEKVFSFGHPNVDTVIDRYLSRVPSQNNGTMQSIEAHRSTNVRELNTHLTQINHLLDIEKKRAEELSHLRKSIEAQFWLAGPVDGMNRAQLELFKKALEELKKLVAHHADRLVIQSAPTQTLPLFF