AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71686

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71686.t1 MTR_1g107450 97.173 283 8 0 1 283 1 283 0.0 548
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71686.t1 AT2G15290 68.462 260 69 2 27 283 47 296 1.89e-115 334

Find 67 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCATTCATTTCAGTGTTT+TGG 0.190891 1.1:-77154423 MS.gene71686:CDS
GATTAGGTAGCTTAGGGTTT+TGG 0.244550 1.1:-77154558 MS.gene71686:CDS
GGGATGGGATCTGCTATTCT+TGG 0.261286 1.1:-77154007 MS.gene71686:CDS
CTCTGCCAACCCATATTATC+AGG 0.265678 1.1:-77153939 MS.gene71686:CDS
GGAGCGATTCCCTGATAATA+TGG 0.296780 1.1:+77153929 None:intergenic
TGGTATAGCATTGAACCTTT+TGG 0.302115 1.1:-77154029 MS.gene71686:CDS
GAAGAACTGTTCAATTTAAG+AGG 0.370176 1.1:+77154844 None:intergenic
CAATCCTTTCTCATTTCCTT+GGG 0.382936 1.1:-77153143 MS.gene71686:CDS
CTAACGCCGGCACCGTGTTC+CGG 0.385142 1.1:-77154958 MS.gene71686:CDS
AGAAATGAAGGAACTGAAAG+AGG 0.389344 1.1:+77154819 None:intergenic
ACAATCCTTTCTCATTTCCT+TGG 0.393630 1.1:-77153144 MS.gene71686:CDS
TGTGTAGGTGGCGAAGAGAT+TGG 0.399741 1.1:-77154605 MS.gene71686:intron
TTCAAGCGATTAGGTAGCTT+AGG 0.400195 1.1:-77154565 MS.gene71686:CDS
CACTCCTTCCAACGAAGAAT+CGG 0.416433 1.1:-77154737 MS.gene71686:CDS
CCTTCATTTCTCATCGTCAA+TGG 0.425680 1.1:-77154807 MS.gene71686:CDS
ACCGTGTTCCGGCAGGTTCA+CGG 0.430996 1.1:-77154947 MS.gene71686:CDS
CCTTATGCAAACTTCAGAAA+TGG 0.431667 1.1:+77153063 None:intergenic
GTAGTTAAAAGCTTACAAAA+TGG 0.434722 1.1:-77154049 MS.gene71686:CDS
GCGAGGCATTTCAAGCGATT+AGG 0.439777 1.1:-77154574 MS.gene71686:CDS
CCATTTCTGAAGTTTGCATA+AGG 0.443202 1.1:-77153063 None:intergenic
GGGAAGACGAGGGACGGAAA+TGG 0.461563 1.1:+77154903 None:intergenic
AAGACATCTAATGCGAGAAC+AGG 0.464297 1.1:+77153896 None:intergenic
GCTGTAGCATAAAACGTTGC+CGG 0.476279 1.1:+77154460 None:intergenic
TCAAGCGATTAGGTAGCTTA+GGG 0.479000 1.1:-77154564 MS.gene71686:CDS
GGATGGGATCTGCTATTCTT+GGG 0.479726 1.1:-77154006 MS.gene71686:CDS
CGCCGGCACCGTGTTCCGGC+AGG 0.498649 1.1:-77154954 MS.gene71686:CDS
AACCTGCCGGAACACGGTGC+CGG 0.519126 1.1:+77154952 None:intergenic
TATTATCAGGGAATCGCTCC+TGG 0.521565 1.1:-77153926 MS.gene71686:CDS
GCCGTGAACCTGCCGGAACA+CGG 0.522890 1.1:+77154946 None:intergenic
CTTGGGATGCAAGCCACAGT+TGG 0.527632 1.1:-77153989 MS.gene71686:CDS
GAAATGAAGGAACTGAAAGA+GGG 0.531980 1.1:+77154820 None:intergenic
AGTTGGATTCTTAGTTGCAA+AGG 0.532071 1.1:-77153972 MS.gene71686:CDS
TTCAATTTAAGAGGGAGTGA+GGG 0.544352 1.1:+77154853 None:intergenic
GAGCGATTCCCTGATAATAT+GGG 0.545660 1.1:+77153930 None:intergenic
AGAAGAAGCGGTTACTGTGA+AGG 0.546077 1.1:+77154777 None:intergenic
GAAGCCCAAGGAAATGAGAA+AGG 0.552017 1.1:+77153139 None:intergenic
TAGCAGATCCCATCCCCAAA+AGG 0.554594 1.1:+77154014 None:intergenic
CCATTGACGATGAGAAATGA+AGG 0.558196 1.1:+77154807 None:intergenic
GAAGAAGCGGTTACTGTGAA+GGG 0.558789 1.1:+77154778 None:intergenic
TTTAACTACATCAGATCGAG+GGG 0.565750 1.1:+77154063 None:intergenic
TGGCGCCGCCGTGAACCTGC+CGG 0.569949 1.1:+77154939 None:intergenic
CTGATAATATGGGTTGGCAG+AGG 0.570282 1.1:+77153940 None:intergenic
TGCAGAGGATTGAGAAGAAG+CGG 0.571740 1.1:+77154765 None:intergenic
AAGAACTGTTCAATTTAAGA+GGG 0.578373 1.1:+77154845 None:intergenic
AGAATTGTTCGGGGAAGACG+AGG 0.581441 1.1:+77154892 None:intergenic
GTTCAATTTAAGAGGGAGTG+AGG 0.594846 1.1:+77154852 None:intergenic
TGTTCGGGGAAGACGAGGGA+CGG 0.600639 1.1:+77154897 None:intergenic
GCTATATTCGCCTCTCTGAG+AGG 0.604639 1.1:-77154393 MS.gene71686:CDS
GAAATGGCTGAGATTGAGAG+TGG 0.616067 1.1:+77154919 None:intergenic
GCGAGAACAGGACTTGAACC+AGG 0.619241 1.1:+77153908 None:intergenic
CCAGCGAGAAAAGAAGCCCA+AGG 0.620312 1.1:+77153127 None:intergenic
GGAAGGAGTGAAAGCTGCAG+AGG 0.633093 1.1:+77154750 None:intergenic
TCAATTTAAGAGGGAGTGAG+GGG 0.636040 1.1:+77154854 None:intergenic
GATTCCCTGATAATATGGGT+TGG 0.640688 1.1:+77153934 None:intergenic
AGAAATGGAAGAGCTTCTGA+CGG 0.648983 1.1:+77153078 None:intergenic
TCTGCCAACCCATATTATCA+GGG 0.650984 1.1:-77153938 MS.gene71686:CDS
TACCGGAAAAGTGACATCGC+CGG 0.662744 1.1:-77154479 MS.gene71686:CDS
AGAGAGGCGAATATAGCCAA+AGG 0.665331 1.1:+77154399 None:intergenic
GAATTGTTCGGGGAAGACGA+GGG 0.667717 1.1:+77154893 None:intergenic
TGCAACTAAGAATCCAACTG+TGG 0.672275 1.1:+77153976 None:intergenic
AATGGAAGAGCTTCTGACGG+CGG 0.675113 1.1:+77153081 None:intergenic
AACTGCAAATGATCCTACCA+AGG 0.682014 1.1:-77154362 MS.gene71686:intron
TTCTACGAAGCCTCTCAGAG+AGG 0.714642 1.1:+77154383 None:intergenic
AATGCAAACTCTTCTAACGC+CGG 0.716376 1.1:-77154971 MS.gene71686:CDS
TTAACTACATCAGATCGAGG+GGG 0.724482 1.1:+77154064 None:intergenic
AGAGATTGGAGAAAACTGCG+AGG 0.729408 1.1:-77154591 MS.gene71686:CDS
GTGTTCCGGCAGGTTCACGG+CGG 0.774246 1.1:-77154944 MS.gene71686:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGTTAAATAAGAAATT+AGG - chr1.1:77154421-77154440 MS.gene71686:CDS 10.0%
!! AATTGTTAAATAAGAAATTA+GGG - chr1.1:77154422-77154441 MS.gene71686:CDS 10.0%
!!! TCAATTTTTTTTAATAGAAA+TGG - chr1.1:77154621-77154640 MS.gene71686:intron 10.0%
!! ATTGTTAAATAAGAAATTAG+GGG - chr1.1:77154423-77154442 MS.gene71686:CDS 15.0%
!! TTAGTTATTATTTACAATGT+TGG - chr1.1:77153921-77153940 MS.gene71686:CDS 15.0%
!! AATATTATTCTTTCCTTTAC+AGG - chr1.1:77154857-77154876 MS.gene71686:CDS 20.0%
!! ATTAACATTATTAGCAAAGA+AGG + chr1.1:77154283-77154302 None:intergenic 20.0%
!! GAAATTGAATTCAATTTCTA+GGG - chr1.1:77153376-77153395 MS.gene71686:intron 20.0%
!! TGAAATTGAATTCAATTTCT+AGG - chr1.1:77153375-77153394 MS.gene71686:intron 20.0%
!!! ATGAATAATTGAATTTGCTT+AGG - chr1.1:77153720-77153739 MS.gene71686:intron 20.0%
! AAGAACTGTTCAATTTAAGA+GGG + chr1.1:77153193-77153212 None:intergenic 25.0%
! ACAACTTAATTAAACGCTTA+TGG - chr1.1:77153801-77153820 MS.gene71686:intron 25.0%
! CAATGGTAAACTATGTATAA+GGG - chr1.1:77154321-77154340 MS.gene71686:intron 25.0%
! GTAGTTAAAAGCTTACAAAA+TGG - chr1.1:77153986-77154005 MS.gene71686:CDS 25.0%
! TAGGAAATAGAACAAAAACT+AGG - chr1.1:77154692-77154711 MS.gene71686:intron 25.0%
! TATAAAATTGCCTTCAATAG+AGG - chr1.1:77154194-77154213 MS.gene71686:intron 25.0%
! TGTTAATTGTTCTAACTGTT+TGG - chr1.1:77153753-77153772 MS.gene71686:intron 25.0%
! TTTAAACAAACTATCGACAA+TGG + chr1.1:77154403-77154422 None:intergenic 25.0%
!! AATTTTGCTTCAGAATTGTT+CGG + chr1.1:77153157-77153176 None:intergenic 25.0%
!! ATGATTAGACTGTTGTTATT+TGG - chr1.1:77154447-77154466 MS.gene71686:CDS 25.0%
!! TTAAGTTGTTTATCTAAGCA+TGG + chr1.1:77153790-77153809 None:intergenic 25.0%
!! TTTTGTTGAATCATGAAACT+AGG - chr1.1:77154673-77154692 MS.gene71686:intron 25.0%
!!! TAAACGTTTTAATCATCCAA+TGG - chr1.1:77154304-77154323 MS.gene71686:intron 25.0%
!!! TGATTAGACTGTTGTTATTT+GGG - chr1.1:77154448-77154467 MS.gene71686:CDS 25.0%
ACTGAAATTTCCTCTATTGA+AGG + chr1.1:77154207-77154226 None:intergenic 30.0%
ATTACAAACCTTCCAACAAA+AGG - chr1.1:77154541-77154560 MS.gene71686:CDS 30.0%
ATTGTGTTGGATAGAATCTA+TGG - chr1.1:77154804-77154823 MS.gene71686:CDS 30.0%
CAAACAGTGATTTCACATTA+AGG + chr1.1:77153883-77153902 None:intergenic 30.0%
CCAATGGTAAACTATGTATA+AGG - chr1.1:77154320-77154339 MS.gene71686:intron 30.0%
CCTTATACATAGTTTACCAT+TGG + chr1.1:77154323-77154342 None:intergenic 30.0%
CTTCCAACAAAAGGAAAAAT+CGG - chr1.1:77154550-77154569 MS.gene71686:CDS 30.0%
GAAGAACTGTTCAATTTAAG+AGG + chr1.1:77153194-77153213 None:intergenic 30.0%
GTGAGTAACATTAATTGTGT+TGG - chr1.1:77154791-77154810 MS.gene71686:CDS 30.0%
TCAAATGAACCAATTCAAAC+AGG - chr1.1:77153857-77153876 MS.gene71686:intron 30.0%
TCATGATTCAACAAAAGCAA+TGG + chr1.1:77154669-77154688 None:intergenic 30.0%
TGAACTAAAAACAAGTACCT+TGG + chr1.1:77153693-77153712 None:intergenic 30.0%
TGTTGGAAGGTTTGTAATAT+GGG + chr1.1:77154539-77154558 None:intergenic 30.0%
TTGTTGGAAGGTTTGTAATA+TGG + chr1.1:77154540-77154559 None:intergenic 30.0%
! ATTTTGCTTCAGAATTGTTC+GGG + chr1.1:77153156-77153175 None:intergenic 30.0%
! TGACAATGTTGTTATTGTGT+AGG - chr1.1:77153415-77153434 MS.gene71686:intron 30.0%
!! ATTAGACTGTTGTTATTTGG+GGG - chr1.1:77154450-77154469 MS.gene71686:CDS 30.0%
!! GATTAGACTGTTGTTATTTG+GGG - chr1.1:77154449-77154468 MS.gene71686:CDS 30.0%
!! TTTTAACTACATCAGATCGA+GGG + chr1.1:77153976-77153995 None:intergenic 30.0%
ACAATCCTTTCTCATTTCCT+TGG - chr1.1:77154891-77154910 MS.gene71686:CDS 35.0%
ACATTAAGGCCTGTTTGAAT+TGG + chr1.1:77153869-77153888 None:intergenic 35.0%
AGAAATGAAGGAACTGAAAG+AGG + chr1.1:77153219-77153238 None:intergenic 35.0%
AGGTCAAATTTGCAAAACAC+AGG + chr1.1:77154263-77154282 None:intergenic 35.0%
AGTTGGATTCTTAGTTGCAA+AGG - chr1.1:77154063-77154082 MS.gene71686:CDS 35.0%
ATGCCAGAAAACAATACAGA+TGG + chr1.1:77154375-77154394 None:intergenic 35.0%
ATTCTTTCCTTTACAGGCTT+CGG - chr1.1:77154863-77154882 MS.gene71686:CDS 35.0%
CAATCCTTTCTCATTTCCTT+GGG - chr1.1:77154892-77154911 MS.gene71686:CDS 35.0%
CTAAAAACAAGTACCTTGGT+AGG + chr1.1:77153689-77153708 None:intergenic 35.0%
GAAATGAAGGAACTGAAAGA+GGG + chr1.1:77153218-77153237 None:intergenic 35.0%
TTCAATTTAAGAGGGAGTGA+GGG + chr1.1:77153185-77153204 None:intergenic 35.0%
TTGGTGCAGGTAAAACTTAT+TGG - chr1.1:77154163-77154182 MS.gene71686:intron 35.0%
TTTAACTACATCAGATCGAG+GGG + chr1.1:77153975-77153994 None:intergenic 35.0%
! ACTCCATCTGTATTGTTTTC+TGG - chr1.1:77154369-77154388 MS.gene71686:CDS 35.0%
! ATTAGGTAGCTTAGGGTTTT+GGG - chr1.1:77153478-77153497 MS.gene71686:intron 35.0%
! CAATGTTGTTATTGTGTAGG+TGG - chr1.1:77153418-77153437 MS.gene71686:intron 35.0%
! CGATTTTTCCTTTTGTTGGA+AGG + chr1.1:77154552-77154571 None:intergenic 35.0%
! CTGCATTCATTTCAGTGTTT+TGG - chr1.1:77153612-77153631 MS.gene71686:intron 35.0%
! TCTCGCATTAGATGTCTTTT+TGG - chr1.1:77154144-77154163 MS.gene71686:intron 35.0%
! TTTTGCTTCAGAATTGTTCG+GGG + chr1.1:77153155-77153174 None:intergenic 35.0%
!! ACTCACATTAGTTTGTTGCT+TGG + chr1.1:77154777-77154796 None:intergenic 35.0%
!! ATTAGATGTCTTTTTGGTGC+AGG - chr1.1:77154150-77154169 MS.gene71686:intron 35.0%
!! CTTTTAACTACATCAGATCG+AGG + chr1.1:77153977-77153996 None:intergenic 35.0%
!! GGTATAGCATTGAACCTTTT+GGG - chr1.1:77154007-77154026 MS.gene71686:CDS 35.0%
!! GTATAGCATTGAACCTTTTG+GGG - chr1.1:77154008-77154027 MS.gene71686:CDS 35.0%
!! TGGTATAGCATTGAACCTTT+TGG - chr1.1:77154006-77154025 MS.gene71686:CDS 35.0%
!!! ACACCGATTTTTCCTTTTGT+TGG + chr1.1:77154556-77154575 None:intergenic 35.0%
!!! ATTTCAGTGTTTTGGTCCTT+TGG - chr1.1:77153620-77153639 MS.gene71686:intron 35.0%
AACTGCAAATGATCCTACCA+AGG - chr1.1:77153673-77153692 MS.gene71686:intron 40.0%
AAGACATCTAATGCGAGAAC+AGG + chr1.1:77154142-77154161 None:intergenic 40.0%
AGAAATGGAAGAGCTTCTGA+CGG + chr1.1:77154960-77154979 None:intergenic 40.0%
ATGGAGTTGTTCTCCAGAAT+AGG + chr1.1:77154356-77154375 None:intergenic 40.0%
CCATTGACGATGAGAAATGA+AGG + chr1.1:77153231-77153250 None:intergenic 40.0%
CCTTCATTTCTCATCGTCAA+TGG - chr1.1:77153228-77153247 MS.gene71686:intron 40.0%
GAGCGATTCCCTGATAATAT+GGG + chr1.1:77154108-77154127 None:intergenic 40.0%
GATTCCCTGATAATATGGGT+TGG + chr1.1:77154104-77154123 None:intergenic 40.0%
GTTCAATTTAAGAGGGAGTG+AGG + chr1.1:77153186-77153205 None:intergenic 40.0%
TCAAGCGATTAGGTAGCTTA+GGG - chr1.1:77153471-77153490 MS.gene71686:intron 40.0%
TCAATTTAAGAGGGAGTGAG+GGG + chr1.1:77153184-77153203 None:intergenic 40.0%
TCTGCCAACCCATATTATCA+GGG - chr1.1:77154097-77154116 MS.gene71686:intron 40.0%
TGCAACTAAGAATCCAACTG+TGG + chr1.1:77154062-77154081 None:intergenic 40.0%
TTAACTACATCAGATCGAGG+GGG + chr1.1:77153974-77153993 None:intergenic 40.0%
TTCAAGCGATTAGGTAGCTT+AGG - chr1.1:77153470-77153489 MS.gene71686:intron 40.0%
! CACTTTTCCGGTAACAACAA+CGG + chr1.1:77153549-77153568 None:intergenic 40.0%
! GATTAGGTAGCTTAGGGTTT+TGG - chr1.1:77153477-77153496 MS.gene71686:intron 40.0%
! TTAGGTAGCTTAGGGTTTTG+GGG - chr1.1:77153479-77153498 MS.gene71686:intron 40.0%
! TTTTCCGATTCTTCGTTGGA+AGG + chr1.1:77153305-77153324 None:intergenic 40.0%
!! AGGGCATCATTTTCCTATTC+TGG - chr1.1:77154340-77154359 MS.gene71686:intron 40.0%
!! GAGCTTTTAGTTGTGGTTTC+AGG - chr1.1:77153946-77153965 MS.gene71686:CDS 40.0%
!! GTTGGTTGAGCTTTTAGTTG+TGG - chr1.1:77153939-77153958 MS.gene71686:CDS 40.0%
!! TCGTTTTCCGTTGTTGTTAC+CGG - chr1.1:77153539-77153558 MS.gene71686:intron 40.0%
AGAAGAAGCGGTTACTGTGA+AGG + chr1.1:77153261-77153280 None:intergenic 45.0%
AGAGAGGCGAATATAGCCAA+AGG + chr1.1:77153639-77153658 None:intergenic 45.0%
AGAGATTGGAGAAAACTGCG+AGG - chr1.1:77153444-77153463 MS.gene71686:intron 45.0%
CACTCCTTCCAACGAAGAAT+CGG - chr1.1:77153298-77153317 MS.gene71686:intron 45.0%
CTCTGCCAACCCATATTATC+AGG - chr1.1:77154096-77154115 MS.gene71686:intron 45.0%
GAAATGGCTGAGATTGAGAG+TGG + chr1.1:77153119-77153138 None:intergenic 45.0%
GAAGAAGCGGTTACTGTGAA+GGG + chr1.1:77153260-77153279 None:intergenic 45.0%
GAAGCCCAAGGAAATGAGAA+AGG + chr1.1:77154899-77154918 None:intergenic 45.0%
GCTGTAGCATAAAACGTTGC+CGG + chr1.1:77153578-77153597 None:intergenic 45.0%
GGAAAAAGCGAAACTCGATC+AGG - chr1.1:77153319-77153338 MS.gene71686:intron 45.0%
GGAGCGATTCCCTGATAATA+TGG + chr1.1:77154109-77154128 None:intergenic 45.0%
GGATGGGATCTGCTATTCTT+GGG - chr1.1:77154029-77154048 MS.gene71686:CDS 45.0%
TATTATCAGGGAATCGCTCC+TGG - chr1.1:77154109-77154128 MS.gene71686:intron 45.0%
TGCAGAGGATTGAGAAGAAG+CGG + chr1.1:77153273-77153292 None:intergenic 45.0%
TTACTTGAAGCCTACCACAG+TGG + chr1.1:77154832-77154851 None:intergenic 45.0%
! ACGTTTTATGCTACAGCTGG+TGG - chr1.1:77153581-77153600 MS.gene71686:intron 45.0%
! GCAACGTTTTATGCTACAGC+TGG - chr1.1:77153578-77153597 MS.gene71686:intron 45.0%
! TGTTATTTGGGGGTGAAGTG+TGG - chr1.1:77154460-77154479 MS.gene71686:CDS 45.0%
!! AGCATTGAACCTTTTGGGGA+TGG - chr1.1:77154012-77154031 MS.gene71686:CDS 45.0%
!! CTGATAATATGGGTTGGCAG+AGG + chr1.1:77154098-77154117 None:intergenic 45.0%
!! GCATTGAACCTTTTGGGGAT+GGG - chr1.1:77154013-77154032 MS.gene71686:CDS 45.0%
!! TAGAATCTATGGTGCCACTG+TGG - chr1.1:77154815-77154834 MS.gene71686:CDS 45.0%
!!! CGCTTTTTCCGATTCTTCGT+TGG + chr1.1:77153309-77153328 None:intergenic 45.0%
AATGGAAGAGCTTCTGACGG+CGG + chr1.1:77154957-77154976 None:intergenic 50.0%
AGAATTGTTCGGGGAAGACG+AGG + chr1.1:77153146-77153165 None:intergenic 50.0%
GAATTGTTCGGGGAAGACGA+GGG + chr1.1:77153145-77153164 None:intergenic 50.0%
GCTATATTCGCCTCTCTGAG+AGG - chr1.1:77153642-77153661 MS.gene71686:intron 50.0%
GGGATGGGATCTGCTATTCT+TGG - chr1.1:77154028-77154047 MS.gene71686:CDS 50.0%
GTGTTTGCCGAAGCCTGTAA+AGG + chr1.1:77154873-77154892 None:intergenic 50.0%
TACCGGAAAAGTGACATCGC+CGG - chr1.1:77153556-77153575 MS.gene71686:intron 50.0%
TAGCAGATCCCATCCCCAAA+AGG + chr1.1:77154024-77154043 None:intergenic 50.0%
TGTGTAGGTGGCGAAGAGAT+TGG - chr1.1:77153430-77153449 MS.gene71686:intron 50.0%
TTCTACGAAGCCTCTCAGAG+AGG + chr1.1:77153655-77153674 None:intergenic 50.0%
TTTGGGGGTGAAGTGTGGAT+TGG - chr1.1:77154465-77154484 MS.gene71686:CDS 50.0%
! GCGAGGCATTTCAAGCGATT+AGG - chr1.1:77153461-77153480 MS.gene71686:intron 50.0%
!! ATCTATGGTGCCACTGTGGT+AGG - chr1.1:77154819-77154838 MS.gene71686:CDS 50.0%
CCAGCGAGAAAAGAAGCCCA+AGG + chr1.1:77154911-77154930 None:intergenic 55.0%
CTTGGGATGCAAGCCACAGT+TGG - chr1.1:77154046-77154065 MS.gene71686:CDS 55.0%
GCGAGAACAGGACTTGAACC+AGG + chr1.1:77154130-77154149 None:intergenic 55.0%
GGAAGGAGTGAAAGCTGCAG+AGG + chr1.1:77153288-77153307 None:intergenic 55.0%
! CCTTGGGCTTCTTTTCTCGC+TGG - chr1.1:77154908-77154927 MS.gene71686:CDS 55.0%
!!! TGCCGGCGATGTCACTTTTC+CGG + chr1.1:77153561-77153580 None:intergenic 55.0%
ACCGTGTTCCGGCAGGTTCA+CGG - chr1.1:77153088-77153107 MS.gene71686:CDS 60.0%
GGGAAGACGAGGGACGGAAA+TGG + chr1.1:77153135-77153154 None:intergenic 60.0%
TGTTCGGGGAAGACGAGGGA+CGG + chr1.1:77153141-77153160 None:intergenic 60.0%
!! GGGGGTGAAGTGTGGATTGG+TGG - chr1.1:77154468-77154487 MS.gene71686:CDS 60.0%
AACCTGCCGGAACACGGTGC+CGG + chr1.1:77153086-77153105 None:intergenic 65.0%
CTAACGCCGGCACCGTGTTC+CGG - chr1.1:77153077-77153096 MS.gene71686:CDS 65.0%
GCCGTGAACCTGCCGGAACA+CGG + chr1.1:77153092-77153111 None:intergenic 65.0%
GTGTTCCGGCAGGTTCACGG+CGG - chr1.1:77153091-77153110 MS.gene71686:CDS 65.0%
TGGCGCCGCCGTGAACCTGC+CGG + chr1.1:77153099-77153118 None:intergenic 75.0%
! CGCCGGCACCGTGTTCCGGC+AGG - chr1.1:77153081-77153100 MS.gene71686:CDS 80.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 77153065 77154992 77153065 ID=MS.gene71686
chr1.1 mRNA 77153065 77154992 77153065 ID=MS.gene71686.t1;Parent=MS.gene71686
chr1.1 exon 77154717 77154992 77154717 ID=MS.gene71686.t1.exon1;Parent=MS.gene71686.t1
chr1.1 CDS 77154717 77154992 77154717 ID=cds.MS.gene71686.t1;Parent=MS.gene71686.t1
chr1.1 exon 77154363 77154620 77154363 ID=MS.gene71686.t1.exon2;Parent=MS.gene71686.t1
chr1.1 CDS 77154363 77154620 77154363 ID=cds.MS.gene71686.t1;Parent=MS.gene71686.t1
chr1.1 exon 77153886 77154089 77153886 ID=MS.gene71686.t1.exon3;Parent=MS.gene71686.t1
chr1.1 CDS 77153886 77154089 77153886 ID=cds.MS.gene71686.t1;Parent=MS.gene71686.t1
chr1.1 exon 77153065 77153178 77153065 ID=MS.gene71686.t1.exon4;Parent=MS.gene71686.t1
chr1.1 CDS 77153065 77153178 77153065 ID=cds.MS.gene71686.t1;Parent=MS.gene71686.t1
Gene Sequence

>MS.gene71686

ATGCAAACTCTTCTAACGCCGGCACCGTGTTCCGGCAGGTTCACGGCGGCGCCACTCTCAATCTCAGCCATTTCCGTCCCTCGTCTTCCCCGAACAATTCTGAAGCAAAATTCTATCCCCTCACTCCCTCTTAAATTGAACAGTTCTTCTCCCTCTTTCAGTTCCTTCATTTCTCATCGTCAATGGAAGCTTCCCTTCACAGTAACCGCTTCTTCTCAATCCTCTGCAGCTTTCACTCCTTCCAACGAAGAATCGGAAAAAGCGAAACTCGATCAGGTACACACTCTTGTTGTTCTAGACTATTCAATTATGAAATTGAATTCAATTTCTAGGGTTTGAATCTGTGCAATTGACAATGTTGTTATTGTGTAGGTGGCGAAGAGATTGGAGAAAACTGCGAGGCATTTCAAGCGATTAGGTAGCTTAGGGTTTTGGGGTCAGCTAGTGTGCACTGTTGTATCAGCTGTCATACTATCGTTTTCCGTTGTTGTTACCGGAAAAGTGACATCGCCGGCAACGTTTTATGCTACAGCTGGTGGAATAGCAGCTGCATTCATTTCAGTGTTTTGGTCCTTTGGCTATATTCGCCTCTCTGAGAGGCTTCGTAGAACTGCAAATGATCCTACCAAGGTACTTGTTTTTAGTTCATTTAAATATGAATAATTGAATTTGCTTAGGAAGCTAAAGATGTTAATTGTTCTAACTGTTTGGATCACTTTAGACCATGCTTAGATAAACAACTTAATTAAACGCTTATGGCTTAATGTTTATCATATATGAGCTTATGTAAGCTCAAATGAACCAATTCAAACAGGCCTTAATGTGAAATCACTGTTTGTTAACATTGAACACTAATTTAGTTATTATTTACAATGTTGGTTGAGCTTTTAGTTGTGGTTTCAGGCACCCCCTCGATCTGATGTAGTTAAAAGCTTACAAAATGGTATAGCATTGAACCTTTTGGGGATGGGATCTGCTATTCTTGGGATGCAAGCCACAGTTGGATTCTTAGTTGCAAAGGCTCTTACTACCTCTGCCAACCCATATTATCAGGGAATCGCTCCTGGTTCAAGTCCTGTTCTCGCATTAGATGTCTTTTTGGTGCAGGTAAAACTTATTGGTTGTTCAGTATAAAATTGCCTTCAATAGAGGAAATTTCAGTTATTTATCAACATTACTCTCAGCTGTTCTCTTTCCTGTGTTTTGCAAATTTGACCTTCTTTGCTAATAATGTTAATATAAACGTTTTAATCATCCAATGGTAAACTATGTATAAGGGCATCATTTTCCTATTCTGGAGAACAACTCCATCTGTATTGTTTTCTGGCATAATAGCCATTGTCGATAGTTTGTTTAAAATTGTTAAATAAGAAATTAGGGGAATGATTAGACTGTTGTTATTTGGGGGTGAAGTGTGGATTGGTGGAGCTGAACTTGACAATTTTGCTATCAGAGCACAAATAACATATTTCCCATATTACAAACCTTCCAACAAAAGGAAAAATCGGTGTCTGCTTTATTTTATGTTTTCATATTTTGAGTTTTGACTACTGTTTTCAATTTTTTTTAATAGAAATGGTGAAGATGAGAAAATCTTGTTTCCATTGCTTTTGTTGAATCATGAAACTAGGAAATAGAACAAAAACTAGGTGATAGTAGTATTTTTATATTTGTTAATGAGAGCATATCAAAATGAAATGAAAAACTCACCAAGCAACAAACTAATGTGAGTAACATTAATTGTGTTGGATAGAATCTATGGTGCCACTGTGGTAGGCTTCAAGTAATAAGTAATATTATTCTTTCCTTTACAGGCTTCGGCAAACACAATCCTTTCTCATTTCCTTGGGCTTCTTTTCTCGCTGGAGTTGTTGAGATCAGTCACATTACCGCCGTCAGAAGCTCTTCCATTTCTGAAGTTTGCATAA
Protein sequence

>MS.gene71686.t1

MQTLLTPAPCSGRFTAAPLSISAISVPRLPRTILKQNSIPSLPLKLNSSSPSFSSFISHRQWKLPFTVTASSQSSAAFTPSNEESEKAKLDQVAKRLEKTARHFKRLGSLGFWGQLVCTVVSAVILSFSVVVTGKVTSPATFYATAGGIAAAFISVFWSFGYIRLSERLRRTANDPTKAPPRSDVVKSLQNGIALNLLGMGSAILGMQATVGFLVAKALTTSANPYYQGIAPGSSPVLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPSEALPFLKFA