AlfalfaGEDB | MS.gene71688

M. sativa cultivar XinJiangDaYe / MS.gene71688

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15 PF12799.10 PF13855.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71688.t1	KEH44107.1	91.1	775	61	6	1	774	1	768	6.60E-306	1059.7

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71688.t1	Q94C77	52.1	793	306	16	4	768	7	753	4.1e-139	496.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71688.t1	A0A072VQM8	91.1	775	61	6	1	774	1	768	4.8e-306	1059.7

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene68882	MS.gene71688	PPI
MS.gene71688	MS.gene073393	PPI
MS.gene71688	MS.gene58620	PPI
MS.gene71688	MS.gene004601	PPI
MS.gene71688	MS.gene00340	PPI

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71688.t1	MTR_1g107460	93.677	775	41	6	1	774	1	768	0.0	1405
MS.gene71688.t1	MTR_4g094958	50.000	770	337	11	22	769	22	765	0.0	697
MS.gene71688.t1	MTR_4g014350	34.660	779	392	18	27	768	23	721	7.71e-131	406
MS.gene71688.t1	MTR_7g070200	34.961	778	398	20	23	768	20	721	3.59e-127	396
MS.gene71688.t1	MTR_1g109580	35.854	767	389	26	23	770	24	706	4.06e-118	372
MS.gene71688.t1	MTR_1g110280	29.086	777	371	24	14	768	19	637	5.45e-77	262
MS.gene71688.t1	MTR_5g083480	30.208	768	411	23	39	768	89	769	1.02e-72	253
MS.gene71688.t1	MTR_5g083480	30.208	768	411	23	39	768	86	766	1.23e-72	253
MS.gene71688.t1	MTR_5g078080	28.681	781	371	23	1	768	3	610	1.43e-66	233
MS.gene71688.t1	MTR_7g073710	30.312	673	311	25	122	768	66	606	4.52e-65	228

Showing 1 to 10 of 1,016 entries

Previous1 2 3 4 5…102Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71688.t1	AT4G34220	51.641	792	317	15	4	771	7	756	0.0	742
MS.gene71688.t1	AT4G37250	50.723	761	353	9	12	768	10	752	0.0	694
MS.gene71688.t1	AT2G15300	50.519	770	307	16	23	768	23	742	0.0	676
MS.gene71688.t1	AT5G67280	47.403	770	364	10	6	770	13	746	0.0	650
MS.gene71688.t1	AT2G23300	51.047	764	324	16	23	770	30	759	0.0	627
MS.gene71688.t1	AT2G01210	35.509	766	408	18	23	772	20	715	2.59e-137	422
MS.gene71688.t1	AT1G25320	36.607	784	390	22	7	768	1	699	6.46e-131	405
MS.gene71688.t1	AT1G67510	34.492	777	403	20	21	768	20	719	8.59e-119	374
MS.gene71688.t1	AT1G66830	34.403	779	400	21	3	768	1	681	8.56e-118	371
MS.gene71688.t1	AT3G57830	30.530	773	371	19	24	768	25	659	2.00e-92	303

Showing 1 to 10 of 907 entries

Previous1 2 3 4 5…91Next

Find 153 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCATTGATTCAGGTAT+TGG	0.397525	1.1:-77169377	None:intergenic
AAATGAATACACATCCCATT+TGG	0.344918	1.1:-77171314	None:intergenic
AAATGGGATGTGTATTCATT+TGG	0.349081	1.1:+77171316	MS.gene71688:CDS
AACAGTATCGTTGTGGACAA+CGG	0.557104	1.1:+77169902	MS.gene71688:CDS
AACGATTCTGGTGCTTGATA+TGG	0.355284	1.1:-77171271	None:intergenic
AACGGGAAGCTTCCGAAAGA+AGG	0.506208	1.1:+77169920	MS.gene71688:CDS
AAGATTCGTGGGTTCTGTTG+GGG	0.529754	1.1:+77170169	MS.gene71688:CDS
AAGGCTTCAGCTTATATACT+TGG	0.394917	1.1:+77169995	MS.gene71688:CDS
AAGTTTCAAAGACTGATAAA+GGG	0.480474	1.1:-77168734	None:intergenic
AATATCAACCATAGAGGAAA+TGG	0.385557	1.1:+77171127	MS.gene71688:CDS

Showing 1 to 10 of 153 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAATACACATCCCATT+TGG	-	chr1.1:77171317-77171336	None:intergenic	30.0%
AAATGGGATGTGTATTCATT+TGG	+	chr1.1:77171316-77171335	MS.gene71688:CDS	30.0%
AAGTCTCAAAGTGTATATGT+TGG	+	chr1.1:77170502-77170521	MS.gene71688:intron	30.0%
AATATCAACCATAGAGGAAA+TGG	+	chr1.1:77171127-77171146	MS.gene71688:CDS	30.0%
AATGAATACACATCCCATTT+GGG	-	chr1.1:77171316-77171335	None:intergenic	30.0%
ACTAGTGATTCTTCTCAAAA+TGG	+	chr1.1:77169596-77169615	MS.gene71688:CDS	30.0%
AGAACAATTAATTCAACACC+AGG	+	chr1.1:77169548-77169567	MS.gene71688:CDS	30.0%
AGAACCATTGAACAAATTTG+AGG	-	chr1.1:77169216-77169235	None:intergenic	30.0%
ATACCAGATGAACTAAATTG+AGG	+	chr1.1:77170830-77170849	MS.gene71688:intron	30.0%
CAAGTTTCAAAGACTGATAA+AGG	-	chr1.1:77168738-77168757	None:intergenic	30.0%

Showing 1 to 10 of 218 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	77168612	77171609	77168612	ID=MS.gene71688
chr1.1	mRNA	77168612	77171609	77168612	ID=MS.gene71688.t1;Parent=MS.gene71688
chr1.1	exon	77168612	77170256	77168612	ID=MS.gene71688.t1.exon1;Parent=MS.gene71688.t1
chr1.1	CDS	77168612	77170256	77168612	ID=cds.MS.gene71688.t1;Parent=MS.gene71688.t1
chr1.1	exon	77170930	77171609	77170930	ID=MS.gene71688.t1.exon2;Parent=MS.gene71688.t1
chr1.1	CDS	77170930	77171609	77170930	ID=cds.MS.gene71688.t1;Parent=MS.gene71688.t1

Gene Sequence

>MS.gene71688

ATGAAGCTTAACACACTCTTGAGAGTTTCATCTTTTCTTTTTCTTCTACTGCTTCAATATTCATATGCACTTAACTCTGATGGAATTTTCTTGCTTAAATTCAGATACTCCATCCTCAGTGACCCTTTATCAGTCTTTGAAACTTGGAACTATGATGATGCAACTCCATGTTCATGGCATGGAGTTGCATGCAGTGAATTAGGATCTCCTGATACTCCTGATTTTCTTAGAGTAACTAGCTTAATCCTTCCAAATAACCAACTTCTTGGTTCCATTGCAGAAGAATTAGGCCTAATCCAAAACCTTCATCACATTGATCTCTCAGACAATTTCCTCAATGGTTCATTACCAAACTCCATCTTCAACTCTTCTCAACTACAATTCCTTTCACTCTCCAACAATAAAATCTCAGGTAAACTACCTGAGTTGATTGGTTTATCTACAAACCTTCAAAGTCTAAACCTTTCCGACAATGCCTTTGTTGGGTCAATCCCAAAAAACCTCACTTCTCTACAGAATCTAACCGTTGTTTCTTTGAAAAGTAACTATTTTTCTGGTGAAATTCCAAATGTGTTGAACTCTGTTCAGATTCTAGATCTTTCCTCAAATTTGTTCAATGGTTCTCTTCCAAGTAGCTTCAATGGTGAAAATCTCCAATACTTGAATCTCTCTTATAATAAAATCTCAGGAGCAATTCCAAAAACATTTGCTAAGCACATTCCTGAAAACTCAACAATTGATCTCTCATTCAACAATCTAACAGGACCAATACCTGAATCAATGGCTTTGCTCAATCAAAAAGCAGAATCACTCTCTGGAAACTCTGATCTATGTGGAAAACCTTTGAAGAATCTTTGTATAATCCCCTCTAGTATCTCTACTCCTCCAGAGAACATCAACAACACATCATCTTCACCAGCAATTGCAGCAATACCAAGAACAATTAATTCAACACCAGGAACAAACACAAACTCAACAACATCAACTAGTGATTCTTCTCAAAATGGTCTAAAACCTACTACAATAGCAGCCATTGTTGTAGGTGACATAGCAGGCATGGGAATTTTAGCTCTTATCATTCTTTGTGTATATCAACAAAGAAAGAAAAGATATCCAAAACCAAACACTGTACTTCAAGAGAAGAAAGTGTTGGAAACTGTAGTGAAACAAGACCAAGAAGCTGTGAAAACACAAACACATTCACTTCAATGTTCTCCATGCTGTTTAACGATTAAACAACAAGACGAGACTTCAGAAGATCCAAGCTCTGATGAGAGTGACCGCGACATTAACAGTATCGTTGTGGACAACGGGAAGCTTCCGAAAGAAGGCACATTGGTAACGGTGGACGGTGAGACGAAGCTGGATTTGGAAACATTGTTGAAGGCTTCAGCTTATATACTTGGAACAAGCCGTGCGAGTATTGTGTATAAAGCAGTTTTACAGGATGGAAGAGTTTTTGCTGTTAGAAGGATTGGTGAGTGTGGTGTTGAAAGAATGAAGGAGTTTGAGAATCAAGTGAGAGCTATTGCTAAGGTTAAGCATCCTAATTTGGTTAAGATTCGTGGGTTCTGTTGGGGTGAAGATGAGAAGCTTGTTATTTCTGATTATGTTCCTAATGGCAGCCTCTCCAGTATTGCTTACAGTAAGTTCACAATATTTTCCTCTGCATTTTGCACAAATTTGTTCAATTATAACAATGCTGATTATGAAGTTAGGGATTAACTTAACATATTAGGGAATAGGGACTATTTATAATATGTTAGGTTGTATTTGGATAAACATTTTAATTAAACATTTACAGTACAAACACTTATTACTCATAAGTTGTTTCCATAAGCTAAGAGCTTATGAAAATAAGCTGAAAATAACTTATGGGCCTATCACAATAAGTCTCAAAGTGTATATGTTGGTTGATAAAGTCAAATATGTCAATTCAAATAGATTTACTTTCATATTTGTTAGGAATCAAGCAAGTAGAAGAGGTAGGTGTTTATATTTGATGCGGTTAGCAATCCACGGATTCATGTAGTTATGAATGTCGATGGTTGTTTGGTCGAAATCAGACGATCTAATATTTCAAGCTCAAAATTTAAGTTATAAAAATCAAAATATACATAAAAATTTGAATCGTTCTATCTCGATCAAACTGTCATGTACTTGACTGCGTGAGTGTCTGGATTGTTAATGTTAGCAAATCCAAATCAAAGAGTTGTTGATACCAGATGAACTAAATTGAGGTTTTTTTAAACCATTTTTTCTGACTAATTTCTTTAGGTTCATGAAAGTTAATAATTGCTTGTGTTAATGATGTTTAGGAAGAGGAGGATCATCCCCTATGAACTTATCCTTGGAAGTGCGGTTGAAGATAGCAAAAGGAGTTGCAAGAGGACTAGCTTATCTTCACGAGAAGAAACACGTGCATGGCAATGTTAAACCAAGCAACATCTTATTAAATTCAGAAATGGAACCCATCATAAGTGATTTTGGAATTGACTTGCTTCTCTTGAATGATAATATCAACCATAGAGGAAATGGTTCATTTAGACAGTTAGTGAACCAGAGAACCCTACAACCACAACAAGACATTCTCACTGGTTCAACTCCTAGCCCCTATGGGACAATGGGGCCATCATCATCTACTAGTGGGGGTCAAGTGCCATATCAAGCACCAGAATCGTTTCAAAACATAAAACCAAACCCCAAATGGGATGTGTATTCATTTGGAGTTATTTTGTTGGAGATTTTAAGTGGGAGGGTTTTCTCGGACCGGGAGTTAGACCAATGGTCTATTCCTGGTTCTGTTGAAGAGGAGAAAAACCGGGTTTTGAGAATGGTTGATGTGGCAATTAAGCATGAGATTGAAGGTGGAGAAAATGTGGTGCTCACGTGTTTTAAGTTGGGGTTAAATTGTGTTTCTCTTGTCCCACAAAAGAGACCGTCCATGAAAGAAGCACTACAAATCTTAGAGAAGATGCCTATATTTGGTATTAATTAA

Protein sequence

>MS.gene71688.t1

MKLNTLLRVSSFLFLLLLQYSYALNSDGIFLLKFRYSILSDPLSVFETWNYDDATPCSWHGVACSELGSPDTPDFLRVTSLILPNNQLLGSIAEELGLIQNLHHIDLSDNFLNGSLPNSIFNSSQLQFLSLSNNKISGKLPELIGLSTNLQSLNLSDNAFVGSIPKNLTSLQNLTVVSLKSNYFSGEIPNVLNSVQILDLSSNLFNGSLPSSFNGENLQYLNLSYNKISGAIPKTFAKHIPENSTIDLSFNNLTGPIPESMALLNQKAESLSGNSDLCGKPLKNLCIIPSSISTPPENINNTSSSPAIAAIPRTINSTPGTNTNSTTSTSDSSQNGLKPTTIAAIVVGDIAGMGILALIILCVYQQRKKRYPKPNTVLQEKKVLETVVKQDQEAVKTQTHSLQCSPCCLTIKQQDETSEDPSSDESDRDINSIVVDNGKLPKEGTLVTVDGETKLDLETLLKASAYILGTSRASIVYKAVLQDGRVFAVRRIGECGVERMKEFENQVRAIAKVKHPNLVKIRGFCWGEDEKLVISDYVPNGSLSSIAYRRGGSSPMNLSLEVRLKIAKGVARGLAYLHEKKHVHGNVKPSNILLNSEMEPIISDFGIDLLLLNDNINHRGNGSFRQLVNQRTLQPQQDILTGSTPSPYGTMGPSSSTSGGQVPYQAPESFQNIKPNPKWDVYSFGVILLEILSGRVFSDRELDQWSIPGSVEEEKNRVLRMVDVAIKHEIEGGENVVLTCFKLGLNCVSLVPQKRPSMKEALQILEKMPIFGIN