Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71716.t1 | XP_003592549.1 | 97.8 | 463 | 7 | 1 | 1 | 463 | 1 | 460 | 1.40E-247 | 865.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71716.t1 | Q9C999 | 67.5 | 453 | 136 | 4 | 8 | 459 | 5 | 447 | 9.0e-166 | 584.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71716.t1 | G7IAS9 | 97.8 | 463 | 7 | 1 | 1 | 463 | 1 | 460 | 1.0e-247 | 865.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051525 | MS.gene71716 | 0.808754 | 2.65E-50 | -1.69E-46 |
| MS.gene052999 | MS.gene71716 | 0.809156 | 2.18E-50 | -1.69E-46 |
| MS.gene053169 | MS.gene71716 | 0.802596 | 5.21E-49 | -1.69E-46 |
| MS.gene05556 | MS.gene71716 | 0.817232 | 3.67E-52 | -1.69E-46 |
| MS.gene055741 | MS.gene71716 | 0.817513 | 3.17E-52 | -1.69E-46 |
| MS.gene055744 | MS.gene71716 | 0.81796 | 2.52E-52 | -1.69E-46 |
| MS.gene057019 | MS.gene71716 | 0.809595 | 1.75E-50 | -1.69E-46 |
| MS.gene059674 | MS.gene71716 | 0.801531 | 8.62E-49 | -1.69E-46 |
| MS.gene061154 | MS.gene71716 | 0.807853 | 4.13E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71716.t1 | MTR_1g108390 | 97.840 | 463 | 7 | 1 | 1 | 463 | 1 | 460 | 0.0 | 918 |
| MS.gene71716.t1 | MTR_5g054950 | 75.810 | 463 | 102 | 2 | 1 | 463 | 1 | 453 | 0.0 | 699 |
| MS.gene71716.t1 | MTR_7g074190 | 38.528 | 462 | 232 | 5 | 2 | 460 | 9 | 421 | 1.22e-105 | 320 |
| MS.gene71716.t1 | MTR_5g024970 | 28.140 | 430 | 273 | 6 | 25 | 452 | 13 | 408 | 5.39e-56 | 191 |
| MS.gene71716.t1 | MTR_5g024660 | 28.604 | 437 | 277 | 9 | 19 | 452 | 7 | 411 | 1.63e-54 | 187 |
| MS.gene71716.t1 | MTR_8g072560 | 29.099 | 433 | 252 | 9 | 25 | 452 | 13 | 395 | 6.30e-54 | 186 |
| MS.gene71716.t1 | MTR_5g024640 | 27.069 | 447 | 291 | 9 | 19 | 462 | 7 | 421 | 1.41e-51 | 180 |
| MS.gene71716.t1 | MTR_5g024970 | 26.477 | 457 | 273 | 7 | 25 | 452 | 13 | 435 | 9.80e-51 | 178 |
| MS.gene71716.t1 | MTR_5g024970 | 27.820 | 399 | 252 | 6 | 25 | 421 | 13 | 377 | 5.16e-49 | 172 |
| MS.gene71716.t1 | MTR_5g024640 | 27.792 | 403 | 256 | 9 | 19 | 418 | 7 | 377 | 3.32e-47 | 167 |
| MS.gene71716.t1 | MTR_5g024970 | 27.027 | 370 | 234 | 6 | 85 | 452 | 9 | 344 | 4.10e-46 | 164 |
| MS.gene71716.t1 | MTR_8g006775 | 25.734 | 443 | 288 | 7 | 22 | 460 | 10 | 415 | 6.87e-46 | 164 |
| MS.gene71716.t1 | MTR_8g073160 | 26.185 | 443 | 249 | 11 | 14 | 452 | 2 | 370 | 1.47e-43 | 157 |
| MS.gene71716.t1 | MTR_8g006780 | 28.375 | 437 | 262 | 9 | 22 | 452 | 10 | 401 | 3.12e-40 | 149 |
| MS.gene71716.t1 | MTR_5g024970 | 25.298 | 336 | 216 | 5 | 25 | 358 | 13 | 315 | 6.95e-36 | 135 |
| MS.gene71716.t1 | MTR_5g024970 | 24.528 | 318 | 205 | 5 | 25 | 340 | 13 | 297 | 1.19e-30 | 121 |
| MS.gene71716.t1 | MTR_5g024640 | 24.615 | 325 | 211 | 8 | 19 | 340 | 7 | 300 | 8.00e-29 | 115 |
| MS.gene71716.t1 | MTR_5g024970 | 35.032 | 157 | 100 | 1 | 25 | 179 | 13 | 169 | 7.02e-26 | 106 |
| MS.gene71716.t1 | MTR_5g024970 | 35.032 | 157 | 100 | 1 | 25 | 179 | 13 | 169 | 1.23e-25 | 106 |
| MS.gene71716.t1 | MTR_5g024560 | 24.746 | 295 | 190 | 7 | 168 | 462 | 38 | 300 | 9.17e-23 | 98.6 |
| MS.gene71716.t1 | MTR_5g024580 | 28.750 | 160 | 111 | 2 | 19 | 175 | 7 | 166 | 1.24e-18 | 83.6 |
| MS.gene71716.t1 | MTR_5g024520 | 35.915 | 142 | 90 | 1 | 311 | 452 | 205 | 345 | 1.26e-18 | 87.4 |
| MS.gene71716.t1 | MTR_8g006780 | 34.459 | 148 | 94 | 2 | 22 | 166 | 10 | 157 | 1.40e-18 | 87.0 |
| MS.gene71716.t1 | MTR_8g006780 | 29.952 | 207 | 140 | 2 | 250 | 452 | 126 | 331 | 2.32e-13 | 71.6 |
| MS.gene71716.t1 | MTR_5g024960 | 42.353 | 85 | 48 | 1 | 368 | 452 | 62 | 145 | 5.81e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71716.t1 | AT1G71090 | 67.257 | 452 | 139 | 3 | 8 | 459 | 5 | 447 | 0.0 | 600 |
| MS.gene71716.t1 | AT5G01990 | 39.551 | 445 | 224 | 9 | 19 | 460 | 28 | 430 | 2.26e-106 | 323 |
| MS.gene71716.t1 | AT1G76520 | 29.724 | 434 | 241 | 9 | 21 | 452 | 10 | 381 | 3.50e-59 | 199 |
| MS.gene71716.t1 | AT1G76520 | 29.724 | 434 | 241 | 9 | 21 | 452 | 10 | 381 | 3.50e-59 | 199 |
| MS.gene71716.t1 | AT2G17500 | 26.682 | 446 | 266 | 5 | 19 | 460 | 7 | 395 | 9.91e-56 | 190 |
| MS.gene71716.t1 | AT2G17500 | 26.682 | 446 | 266 | 5 | 19 | 460 | 7 | 395 | 9.91e-56 | 190 |
| MS.gene71716.t1 | AT2G17500 | 26.682 | 446 | 266 | 5 | 19 | 460 | 7 | 395 | 9.91e-56 | 190 |
| MS.gene71716.t1 | AT2G17500 | 26.682 | 446 | 266 | 5 | 19 | 460 | 7 | 395 | 9.91e-56 | 190 |
| MS.gene71716.t1 | AT5G65980 | 25.721 | 451 | 269 | 7 | 17 | 461 | 5 | 395 | 1.28e-53 | 185 |
| MS.gene71716.t1 | AT5G65980 | 26.225 | 408 | 235 | 7 | 17 | 418 | 5 | 352 | 1.14e-47 | 168 |
| MS.gene71716.t1 | AT1G20925 | 37.791 | 172 | 106 | 1 | 281 | 452 | 293 | 463 | 1.01e-28 | 118 |
| MS.gene71716.t1 | AT1G20925 | 32.919 | 161 | 106 | 1 | 21 | 179 | 97 | 257 | 9.16e-24 | 103 |
| MS.gene71716.t1 | AT1G76530 | 34.667 | 150 | 96 | 1 | 24 | 171 | 12 | 161 | 1.17e-20 | 93.2 |
| MS.gene71716.t1 | AT1G76530 | 34.667 | 150 | 96 | 1 | 24 | 171 | 12 | 161 | 2.25e-20 | 93.6 |
| MS.gene71716.t1 | AT1G76530 | 36.913 | 149 | 88 | 2 | 309 | 452 | 259 | 406 | 8.97e-18 | 85.5 |
| MS.gene71716.t1 | AT1G76530 | 34.667 | 150 | 96 | 1 | 24 | 171 | 12 | 161 | 2.25e-20 | 93.6 |
| MS.gene71716.t1 | AT1G76530 | 36.913 | 149 | 88 | 2 | 309 | 452 | 259 | 406 | 8.97e-18 | 85.5 |
Find 76 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAGATAGTTTGGAAATTT+TGG | 0.137457 | 1.1:+77487306 | MS.gene71716:CDS |
| CCTGATTTCGATTCATTATC+AGG | 0.203290 | 1.1:+77487058 | MS.gene71716:CDS |
| CCTTGTGTAATGCTTATATT+AGG | 0.218422 | 1.1:+77487343 | MS.gene71716:CDS |
| CTTAAAGATTCTAGCAATAA+AGG | 0.231812 | 1.1:-77486999 | None:intergenic |
| CTTGTTGTGCTTCCTGTTAT+AGG | 0.233061 | 1.1:+77487439 | MS.gene71716:CDS |
| CATACTCAAAATACTCCTTT+TGG | 0.244311 | 1.1:+77486731 | MS.gene71716:CDS |
| AAGCTTCAGCAGTTCTATTC+TGG | 0.272470 | 1.1:+77487608 | MS.gene71716:CDS |
| TTAGGAATTAATTTCATTCT+TGG | 0.273011 | 1.1:-77486434 | None:intergenic |
| ACAATCATAATGACAGGATT+TGG | 0.274474 | 1.1:+77486665 | MS.gene71716:CDS |
| GTGCTTCCTGTTATAGGAAT+TGG | 0.292331 | 1.1:+77487445 | MS.gene71716:CDS |
| AACCAAGTTCACTAAATATT+AGG | 0.305263 | 1.1:-77486508 | None:intergenic |
| CTTGGAATTAAAACTACAAT+TGG | 0.314458 | 1.1:+77487400 | MS.gene71716:CDS |
| TGCTTCCTGTTATAGGAATT+GGG | 0.320264 | 1.1:+77487446 | MS.gene71716:CDS |
| AAAATAATCATATGTCTATT+AGG | 0.320538 | 1.1:+77487113 | MS.gene71716:CDS |
| AGGAGTTTAAATGTGGCTTT+AGG | 0.328503 | 1.1:-77486452 | None:intergenic |
| TCTTTGTTGGCTATTATCAT+TGG | 0.349134 | 1.1:+77487226 | MS.gene71716:CDS |
| CTTGTGTAATGCTTATATTA+GGG | 0.353196 | 1.1:+77487344 | MS.gene71716:CDS |
| GTTTCTTTATCTTCAATTCC+AGG | 0.358521 | 1.1:-77486959 | None:intergenic |
| CTTATGTTTCTTTATCTCAA+TGG | 0.364572 | 1.1:+77486780 | MS.gene71716:CDS |
| TCATATGTCTATTAGGTGTT+TGG | 0.365120 | 1.1:+77487120 | MS.gene71716:CDS |
| ATTCCAAGTGTTGACTCATT+TGG | 0.365792 | 1.1:-77487385 | None:intergenic |
| TAGGAATTAATTTCATTCTT+GGG | 0.365940 | 1.1:-77486433 | None:intergenic |
| TGGCTGAGCCTAGAGTTGTT+AGG | 0.375993 | 1.1:+77487140 | MS.gene71716:CDS |
| ACCAACAATTGCATCTTTGT+TGG | 0.380059 | 1.1:+77487213 | MS.gene71716:CDS |
| GGTTGAAGTATGTGATGAAT+TGG | 0.402240 | 1.1:-77487190 | None:intergenic |
| GAAATCAGGATCAGGAATAA+TGG | 0.402945 | 1.1:-77487044 | None:intergenic |
| ACAATCCCAATTCCTATAAC+AGG | 0.408237 | 1.1:-77487451 | None:intergenic |
| AATCTTCTCATTGCTGTAGT+TGG | 0.414891 | 1.1:+77486698 | MS.gene71716:CDS |
| GGGAGCAATTGCTAGCTTGA+GGG | 0.420113 | 1.1:+77487570 | MS.gene71716:CDS |
| GTACTAAGAAGCACATTAAC+TGG | 0.420568 | 1.1:-77486572 | None:intergenic |
| GTGAATCTATTAAACCTTTG+AGG | 0.420872 | 1.1:-77486644 | None:intergenic |
| TTAAAGATTCTAGCAATAAA+GGG | 0.426630 | 1.1:-77486998 | None:intergenic |
| TGCCTAATATTTAGTGAACT+TGG | 0.428326 | 1.1:+77486506 | MS.gene71716:CDS |
| CCTGATAATGAATCGAAATC+AGG | 0.429636 | 1.1:-77487058 | None:intergenic |
| TACAGCAATGAGAAGATTAC+CGG | 0.449081 | 1.1:-77486693 | None:intergenic |
| TTAATCTGCCTTCCACTCAT+AGG | 0.452296 | 1.1:+77486395 | MS.gene71716:CDS |
| AGGAATTGGGATTGTTGTGT+TGG | 0.466637 | 1.1:+77487459 | MS.gene71716:CDS |
| GTGCAAATACAAGTTTACTT+AGG | 0.473864 | 1.1:-77486472 | None:intergenic |
| TTGGAATTAAAACTACAATT+GGG | 0.477581 | 1.1:+77487401 | MS.gene71716:CDS |
| TGGGAGCAATTGCTAGCTTG+AGG | 0.481846 | 1.1:+77487569 | MS.gene71716:CDS |
| ACAATCTCATAATACTCAAA+AGG | 0.487804 | 1.1:-77486851 | None:intergenic |
| CTTGTAGAAGCTGAGTGGCC+TGG | 0.487906 | 1.1:+77486941 | MS.gene71716:CDS |
| GCCAACAAAGATGCAATTGT+TGG | 0.492975 | 1.1:-77487214 | None:intergenic |
| CTTATCCTCCTAACAACTCT+AGG | 0.497949 | 1.1:-77487148 | None:intergenic |
| AATAATGGACGAGGAAATAC+CGG | 0.501207 | 1.1:-77487029 | None:intergenic |
| AATGAATCGAAATCAGGATC+AGG | 0.507261 | 1.1:-77487052 | None:intergenic |
| ATGCTTACTTGGATTCATAG+TGG | 0.542583 | 1.1:+77486604 | MS.gene71716:CDS |
| AACTACAATTGGGATAATTG+TGG | 0.546358 | 1.1:+77487411 | MS.gene71716:CDS |
| TTCATTATCAGGATCAGTAA+TGG | 0.546971 | 1.1:+77487069 | MS.gene71716:CDS |
| GAAGTAGTCCTATGAGTGGA+AGG | 0.554590 | 1.1:-77486403 | None:intergenic |
| ATCTATTAAACCTTTGAGGT+GGG | 0.559127 | 1.1:-77486640 | None:intergenic |
| GGAGCAATTGCTAGCTTGAG+GGG | 0.563569 | 1.1:+77487571 | MS.gene71716:CDS |
| AGATTCACAATCATAATGAC+AGG | 0.565619 | 1.1:+77486659 | MS.gene71716:CDS |
| CTATATGTCACCCACCTCAA+AGG | 0.567998 | 1.1:+77486630 | MS.gene71716:CDS |
| TTGTGTAATGCTTATATTAG+GGG | 0.572998 | 1.1:+77487345 | MS.gene71716:CDS |
| CTATCTGTCATAAAAGACAT+TGG | 0.574241 | 1.1:-77487292 | None:intergenic |
| TTTACTTAGGAGTTTAAATG+TGG | 0.575857 | 1.1:-77486459 | None:intergenic |
| GGACCAAATGAGTCAACACT+TGG | 0.581085 | 1.1:+77487382 | MS.gene71716:CDS |
| CACTCAGCTTCTACAAGAAG+CGG | 0.586574 | 1.1:-77486935 | None:intergenic |
| ATGAAAATAATGATAAAATG+AGG | 0.590735 | 1.1:+77486327 | MS.gene71716:CDS |
| AGGCAGATTAACTTCAACAA+AGG | 0.594814 | 1.1:-77486383 | None:intergenic |
| AACAAAGATGCAATTGTTGG+TGG | 0.598573 | 1.1:-77487211 | None:intergenic |
| GGAAAACAATGCAATGCAAG+AGG | 0.599070 | 1.1:+77486752 | MS.gene71716:CDS |
| AATCTATTAAACCTTTGAGG+TGG | 0.609661 | 1.1:-77486641 | None:intergenic |
| TGTGTAATGCTTATATTAGG+GGG | 0.611243 | 1.1:+77487346 | MS.gene71716:CDS |
| CTGAGCCTAGAGTTGTTAGG+AGG | 0.617408 | 1.1:+77487143 | MS.gene71716:CDS |
| GCTCCCAACAAAATAGCACT+TGG | 0.619409 | 1.1:-77487553 | None:intergenic |
| AGGATCAGTAATGGAGGACG+AGG | 0.622249 | 1.1:+77487078 | MS.gene71716:CDS |
| ATCTCATAATACTCAAAAGG+AGG | 0.634016 | 1.1:-77486848 | None:intergenic |
| ATGACAGGATTTGGAAACAC+CGG | 0.646503 | 1.1:+77486674 | MS.gene71716:CDS |
| AGGATCAGGAATAATGGACG+AGG | 0.649375 | 1.1:-77487038 | None:intergenic |
| CGCTTCTTGTAGAAGCTGAG+TGG | 0.653516 | 1.1:+77486936 | MS.gene71716:CDS |
| AGTTCACTAAATATTAGGCA+AGG | 0.654744 | 1.1:-77486503 | None:intergenic |
| ATTATCAGGATCAGTAATGG+AGG | 0.655209 | 1.1:+77487072 | MS.gene71716:CDS |
| GCAAGAAGTAGTCCTATGAG+TGG | 0.663281 | 1.1:-77486407 | None:intergenic |
| CCTAATATAAGCATTACACA+AGG | 0.709180 | 1.1:-77487343 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATCATATGTCTATT+AGG | + | chr1.1:77487113-77487132 | MS.gene71716:CDS | 15.0% |
| !! | ATGAAAATAATGATAAAATG+AGG | + | chr1.1:77486327-77486346 | MS.gene71716:CDS | 15.0% |
| !! | TAGGAATTAATTTCATTCTT+GGG | - | chr1.1:77486436-77486455 | None:intergenic | 20.0% |
| !! | TTAAAGATTCTAGCAATAAA+GGG | - | chr1.1:77487001-77487020 | None:intergenic | 20.0% |
| !! | TTAGGAATTAATTTCATTCT+TGG | - | chr1.1:77486437-77486456 | None:intergenic | 20.0% |
| !! | TTGGAATTAAAACTACAATT+GGG | + | chr1.1:77487401-77487420 | MS.gene71716:CDS | 20.0% |
| !!! | AAAGAAAAATGTTTTCAACT+GGG | - | chr1.1:77487260-77487279 | None:intergenic | 20.0% |
| ! | AACCAAGTTCACTAAATATT+AGG | - | chr1.1:77486511-77486530 | None:intergenic | 25.0% |
| ! | ACAATCTCATAATACTCAAA+AGG | - | chr1.1:77486854-77486873 | None:intergenic | 25.0% |
| ! | CTTAAAGATTCTAGCAATAA+AGG | - | chr1.1:77487002-77487021 | None:intergenic | 25.0% |
| ! | CTTATGTTTCTTTATCTCAA+TGG | + | chr1.1:77486780-77486799 | MS.gene71716:CDS | 25.0% |
| ! | CTTGGAATTAAAACTACAAT+TGG | + | chr1.1:77487400-77487419 | MS.gene71716:CDS | 25.0% |
| ! | CTTGTGTAATGCTTATATTA+GGG | + | chr1.1:77487344-77487363 | MS.gene71716:CDS | 25.0% |
| ! | TTGTGTAATGCTTATATTAG+GGG | + | chr1.1:77487345-77487364 | MS.gene71716:CDS | 25.0% |
| ! | TTTACTTAGGAGTTTAAATG+TGG | - | chr1.1:77486462-77486481 | None:intergenic | 25.0% |
| !! | AAGAAAAATGTTTTCAACTG+GGG | - | chr1.1:77487259-77487278 | None:intergenic | 25.0% |
| !! | CAAAGAAAAATGTTTTCAAC+TGG | - | chr1.1:77487261-77487280 | None:intergenic | 25.0% |
| !! | CAGTTGAAAACATTTTTCTT+TGG | + | chr1.1:77487259-77487278 | MS.gene71716:CDS | 25.0% |
| !! | CATTACTCTTGAGAATTTTA+AGG | + | chr1.1:77486535-77486554 | MS.gene71716:CDS | 25.0% |
| AACTACAATTGGGATAATTG+TGG | + | chr1.1:77487411-77487430 | MS.gene71716:CDS | 30.0% | |
| ACAATCATAATGACAGGATT+TGG | + | chr1.1:77486665-77486684 | MS.gene71716:CDS | 30.0% | |
| AGATTCACAATCATAATGAC+AGG | + | chr1.1:77486659-77486678 | MS.gene71716:CDS | 30.0% | |
| AGTTCACTAAATATTAGGCA+AGG | - | chr1.1:77486506-77486525 | None:intergenic | 30.0% | |
| ATCTCATAATACTCAAAAGG+AGG | - | chr1.1:77486851-77486870 | None:intergenic | 30.0% | |
| CCTAATATAAGCATTACACA+AGG | - | chr1.1:77487346-77487365 | None:intergenic | 30.0% | |
| CCTTGTGTAATGCTTATATT+AGG | + | chr1.1:77487343-77487362 | MS.gene71716:CDS | 30.0% | |
| CTATCTGTCATAAAAGACAT+TGG | - | chr1.1:77487295-77487314 | None:intergenic | 30.0% | |
| GTGAATCTATTAAACCTTTG+AGG | - | chr1.1:77486647-77486666 | None:intergenic | 30.0% | |
| GTGCAAATACAAGTTTACTT+AGG | - | chr1.1:77486475-77486494 | None:intergenic | 30.0% | |
| GTTTCTTTATCTTCAATTCC+AGG | - | chr1.1:77486962-77486981 | None:intergenic | 30.0% | |
| TCATATGTCTATTAGGTGTT+TGG | + | chr1.1:77487120-77487139 | MS.gene71716:CDS | 30.0% | |
| TGCCTAATATTTAGTGAACT+TGG | + | chr1.1:77486506-77486525 | MS.gene71716:CDS | 30.0% | |
| TGTGTAATGCTTATATTAGG+GGG | + | chr1.1:77487346-77487365 | MS.gene71716:CDS | 30.0% | |
| TTCATTATCAGGATCAGTAA+TGG | + | chr1.1:77487069-77487088 | MS.gene71716:CDS | 30.0% | |
| ! | AATCTATTAAACCTTTGAGG+TGG | - | chr1.1:77486644-77486663 | None:intergenic | 30.0% |
| ! | CATACTCAAAATACTCCTTT+TGG | + | chr1.1:77486731-77486750 | MS.gene71716:CDS | 30.0% |
| ! | GACAGATAGTTTGGAAATTT+TGG | + | chr1.1:77487306-77487325 | MS.gene71716:CDS | 30.0% |
| ! | GTCTTTTATGACAGATAGTT+TGG | + | chr1.1:77487297-77487316 | MS.gene71716:CDS | 30.0% |
| ! | TCTTTGTTGGCTATTATCAT+TGG | + | chr1.1:77487226-77487245 | MS.gene71716:CDS | 30.0% |
| !! | AGAATCTTTAAGAGCTTTTC+CGG | + | chr1.1:77487010-77487029 | MS.gene71716:CDS | 30.0% |
| !! | ATCTATTAAACCTTTGAGGT+GGG | - | chr1.1:77486643-77486662 | None:intergenic | 30.0% |
| !! | CACTTTTGTTTATCACATGA+TGG | + | chr1.1:77486823-77486842 | MS.gene71716:CDS | 30.0% |
| !! | CTCTTGAGAATTTTAAGGAA+TGG | + | chr1.1:77486540-77486559 | MS.gene71716:CDS | 30.0% |
| !! | TTGAGAATTTTAAGGAATGG+TGG | + | chr1.1:77486543-77486562 | MS.gene71716:CDS | 30.0% |
| !!! | ACATTTTTTGGATGCTTACT+TGG | + | chr1.1:77486593-77486612 | MS.gene71716:CDS | 30.0% |
| !!! | GGCTGATAAGTTGAATTTTT+TGG | + | chr1.1:77487480-77487499 | MS.gene71716:CDS | 30.0% |
| !!! | GTGCTTCTTAGTACATTTTT+TGG | + | chr1.1:77486581-77486600 | MS.gene71716:CDS | 30.0% |
| AACAAAGATGCAATTGTTGG+TGG | - | chr1.1:77487214-77487233 | None:intergenic | 35.0% | |
| AATCTTCTCATTGCTGTAGT+TGG | + | chr1.1:77486698-77486717 | MS.gene71716:CDS | 35.0% | |
| AATGAATCGAAATCAGGATC+AGG | - | chr1.1:77487055-77487074 | None:intergenic | 35.0% | |
| ACAATCCCAATTCCTATAAC+AGG | - | chr1.1:77487454-77487473 | None:intergenic | 35.0% | |
| ACCAACAATTGCATCTTTGT+TGG | + | chr1.1:77487213-77487232 | MS.gene71716:CDS | 35.0% | |
| AGGAGTTTAAATGTGGCTTT+AGG | - | chr1.1:77486455-77486474 | None:intergenic | 35.0% | |
| AGGCAGATTAACTTCAACAA+AGG | - | chr1.1:77486386-77486405 | None:intergenic | 35.0% | |
| ATGCTTACTTGGATTCATAG+TGG | + | chr1.1:77486604-77486623 | MS.gene71716:CDS | 35.0% | |
| ATTATCAGGATCAGTAATGG+AGG | + | chr1.1:77487072-77487091 | MS.gene71716:CDS | 35.0% | |
| CCTGATTTCGATTCATTATC+AGG | + | chr1.1:77487058-77487077 | MS.gene71716:CDS | 35.0% | |
| GAAATCAGGATCAGGAATAA+TGG | - | chr1.1:77487047-77487066 | None:intergenic | 35.0% | |
| GGTTGAAGTATGTGATGAAT+TGG | - | chr1.1:77487193-77487212 | None:intergenic | 35.0% | |
| TACAGCAATGAGAAGATTAC+CGG | - | chr1.1:77486696-77486715 | None:intergenic | 35.0% | |
| TGCTTCCTGTTATAGGAATT+GGG | + | chr1.1:77487446-77487465 | MS.gene71716:CDS | 35.0% | |
| ! | CCTGATAATGAATCGAAATC+AGG | - | chr1.1:77487061-77487080 | None:intergenic | 35.0% |
| ! | GCATTGCATTGTTTTCCAAA+AGG | - | chr1.1:77486749-77486768 | None:intergenic | 35.0% |
| ! | GTACTAAGAAGCACATTAAC+TGG | - | chr1.1:77486575-77486594 | None:intergenic | 35.0% |
| !! | AATAATGGACGAGGAAATAC+CGG | - | chr1.1:77487032-77487051 | None:intergenic | 35.0% |
| !! | ATTCCAAGTGTTGACTCATT+TGG | - | chr1.1:77487388-77487407 | None:intergenic | 35.0% |
| !! | GATAGTTTGGAAATTTTGGC+TGG | + | chr1.1:77487310-77487329 | MS.gene71716:CDS | 35.0% |
| !!! | AACACCAAGTGCTATTTTGT+TGG | + | chr1.1:77487549-77487568 | MS.gene71716:CDS | 35.0% |
| !!! | ACACCAAGTGCTATTTTGTT+GGG | + | chr1.1:77487550-77487569 | MS.gene71716:CDS | 35.0% |
| AAGCTTCAGCAGTTCTATTC+TGG | + | chr1.1:77487608-77487627 | MS.gene71716:CDS | 40.0% | |
| AGGAATTGGGATTGTTGTGT+TGG | + | chr1.1:77487459-77487478 | MS.gene71716:CDS | 40.0% | |
| ATGACAGGATTTGGAAACAC+CGG | + | chr1.1:77486674-77486693 | MS.gene71716:CDS | 40.0% | |
| CTTATCCTCCTAACAACTCT+AGG | - | chr1.1:77487151-77487170 | None:intergenic | 40.0% | |
| GCCAACAAAGATGCAATTGT+TGG | - | chr1.1:77487217-77487236 | None:intergenic | 40.0% | |
| GGAAAACAATGCAATGCAAG+AGG | + | chr1.1:77486752-77486771 | MS.gene71716:CDS | 40.0% | |
| GTGCTTCCTGTTATAGGAAT+TGG | + | chr1.1:77487445-77487464 | MS.gene71716:CDS | 40.0% | |
| TTAATCTGCCTTCCACTCAT+AGG | + | chr1.1:77486395-77486414 | MS.gene71716:CDS | 40.0% | |
| ! | CTTGTTGTGCTTCCTGTTAT+AGG | + | chr1.1:77487439-77487458 | MS.gene71716:CDS | 40.0% |
| CACTCAGCTTCTACAAGAAG+CGG | - | chr1.1:77486938-77486957 | None:intergenic | 45.0% | |
| CTATATGTCACCCACCTCAA+AGG | + | chr1.1:77486630-77486649 | MS.gene71716:CDS | 45.0% | |
| GAAGTAGTCCTATGAGTGGA+AGG | - | chr1.1:77486406-77486425 | None:intergenic | 45.0% | |
| GCAAGAAGTAGTCCTATGAG+TGG | - | chr1.1:77486410-77486429 | None:intergenic | 45.0% | |
| GCTCCCAACAAAATAGCACT+TGG | - | chr1.1:77487556-77487575 | None:intergenic | 45.0% | |
| GGACCAAATGAGTCAACACT+TGG | + | chr1.1:77487382-77487401 | MS.gene71716:CDS | 45.0% | |
| !! | AGGATCAGGAATAATGGACG+AGG | - | chr1.1:77487041-77487060 | None:intergenic | 45.0% |
| !!! | GGAAATTTTGGCTGGTGCAA+TGG | + | chr1.1:77487318-77487337 | MS.gene71716:CDS | 45.0% |
| CGCTTCTTGTAGAAGCTGAG+TGG | + | chr1.1:77486936-77486955 | MS.gene71716:CDS | 50.0% | |
| CTGAGCCTAGAGTTGTTAGG+AGG | + | chr1.1:77487143-77487162 | MS.gene71716:CDS | 50.0% | |
| TGGCTGAGCCTAGAGTTGTT+AGG | + | chr1.1:77487140-77487159 | MS.gene71716:CDS | 50.0% | |
| ! | AGGATCAGTAATGGAGGACG+AGG | + | chr1.1:77487078-77487097 | MS.gene71716:CDS | 50.0% |
| ! | GGAGCAATTGCTAGCTTGAG+GGG | + | chr1.1:77487571-77487590 | MS.gene71716:CDS | 50.0% |
| ! | GGGAGCAATTGCTAGCTTGA+GGG | + | chr1.1:77487570-77487589 | MS.gene71716:CDS | 50.0% |
| ! | TGGGAGCAATTGCTAGCTTG+AGG | + | chr1.1:77487569-77487588 | MS.gene71716:CDS | 50.0% |
| ! | TTAGGGGGTATGCTAGCTGA+AGG | + | chr1.1:77487361-77487380 | MS.gene71716:CDS | 50.0% |
| CTTGTAGAAGCTGAGTGGCC+TGG | + | chr1.1:77486941-77486960 | MS.gene71716:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 77486311 | 77487702 | 77486311 | ID=MS.gene71716 |
| chr1.1 | mRNA | 77486311 | 77487702 | 77486311 | ID=MS.gene71716.t1;Parent=MS.gene71716 |
| chr1.1 | exon | 77486311 | 77487702 | 77486311 | ID=MS.gene71716.t1.exon1;Parent=MS.gene71716.t1 |
| chr1.1 | CDS | 77486311 | 77487702 | 77486311 | ID=cds.MS.gene71716.t1;Parent=MS.gene71716.t1 |
| Gene Sequence |
| Protein sequence |
