AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053169


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053169.t1 MTR_4g007910 95.423 284 12 1 14 297 17 299 0.0 532
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053169.t1 AT1G16080 71.864 295 83 0 3 297 19 313 4.53e-154 433

Find 88 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTATGGCAAGTGGTCTT+TGG 0.280904 4.2:-92028875 MS.gene053169:CDS
TTTCTAGTACAAACCAAAAT+AGG 0.303632 4.2:+92029798 None:intergenic
GACTCTGAATCTGAAATTCT+TGG 0.306101 4.2:+92029974 None:intergenic
TTTCAACTCTTTAAGCCATT+TGG 0.333255 4.2:+92026755 None:intergenic
TGGAAAAGCTTTAGAAGGTA+TGG 0.356993 4.2:-92029880 MS.gene053169:CDS
AAACCACTCCTCTTTCTAGA+TGG 0.363477 4.2:-92029752 MS.gene053169:CDS
CTGATGCTAGTTCTGCTATC+AGG 0.381223 4.2:+92027358 None:intergenic
ATTTGTTCTGTCATGCTTGT+TGG 0.385378 4.2:-92028133 MS.gene053169:CDS
TAAGCAGCTGTCAATCCTTC+AGG 0.391739 4.2:+92028892 None:intergenic
AGAGTTGGAAAAGCTTTAGA+AGG 0.394622 4.2:-92029885 MS.gene053169:CDS
GAAGGATTGACAGCTGCTTA+TGG 0.394793 4.2:-92028889 MS.gene053169:CDS
TTCTGTTGGTGTTGTGGAAA+AGG 0.395942 4.2:-92028092 MS.gene053169:CDS
TCACTTTCCCACGGCAGTTA+AGG 0.401542 4.2:-92027259 MS.gene053169:CDS
AGGGGTTTCTGTTGGTGTTG+TGG 0.406514 4.2:-92028098 MS.gene053169:CDS
GTATCAGTCTTACCATCAAT+AGG 0.407023 4.2:+92028919 None:intergenic
ATCAGCAGCAGCTAGTGAAA+AGG 0.412413 4.2:-92027340 MS.gene053169:CDS
TATCAGTCTTACCATCAATA+GGG 0.414325 4.2:+92028920 None:intergenic
TCAGCAGCAGCTAGTGAAAA+GGG 0.417729 4.2:-92027339 MS.gene053169:CDS
GAGAGTAAAGGTTTGAAAGA+TGG 0.424292 4.2:-92028988 MS.gene053169:CDS
CTTGGAGAGTCCCCTATTGA+TGG 0.426493 4.2:-92028931 MS.gene053169:CDS
GGTCATGTTTGCAGTTCAAA+TGG 0.443722 4.2:-92026851 MS.gene053169:intron
ACGGTTCCAACATTCCATTC+TGG 0.447867 4.2:+92029016 None:intergenic
GACATGGATCCTGCTTGCCT+TGG 0.448950 4.2:+92026787 None:intergenic
AGAGTAAAGGTTTGAAAGAT+GGG 0.455581 4.2:-92028987 MS.gene053169:CDS
CCGGCCGTCATTGTCGGCGG+TGG 0.458905 4.2:-92029909 MS.gene053169:CDS
GTTGCTCCGGCCGTCATTGT+CGG 0.460579 4.2:-92029915 MS.gene053169:CDS
TTGTTGGAGCGCGTCATGGA+GGG 0.466204 4.2:-92028117 MS.gene053169:CDS
ACTCTGAATCTGAAATTCTT+GGG 0.469018 4.2:+92029975 None:intergenic
AGATGTTAGAGAAGCTCATA+TGG 0.474520 4.2:-92028156 MS.gene053169:CDS
GGAAAAGCTTTAGAAGGTAT+GGG 0.482710 4.2:-92029879 MS.gene053169:CDS
ATAGGACCTTCAAAATCAAC+GGG 0.484016 4.2:+92029816 None:intergenic
TATTTCGCAGTGTCAAAACT+TGG 0.486806 4.2:-92028949 MS.gene053169:CDS
CGTCATGGAGGGGTTTCTGT+TGG 0.491161 4.2:-92028106 MS.gene053169:CDS
ACATGGATCCTGCTTGCCTT+GGG 0.493651 4.2:+92026788 None:intergenic
GGCTATTGCCCAAGGCAAGC+AGG 0.503997 4.2:-92026796 MS.gene053169:CDS
AGTTCAAATGGAGGAATGGT+TGG 0.513675 4.2:-92026839 MS.gene053169:CDS
TGTTGGAGCGCGTCATGGAG+GGG 0.514554 4.2:-92028116 MS.gene053169:CDS
CTTGTTGGAGCGCGTCATGG+AGG 0.518604 4.2:-92028118 MS.gene053169:CDS
ATTGTCGGCGGTGGAAGAGT+TGG 0.520026 4.2:-92029900 MS.gene053169:CDS
ATGCTTGTTGGAGCGCGTCA+TGG 0.522740 4.2:-92028121 MS.gene053169:CDS
GACGGCCGGAGCAACTTTAG+TGG 0.529509 4.2:+92029923 None:intergenic
CTTTACCTCCTTAACTGCCG+TGG 0.529569 4.2:+92027251 None:intergenic
CTCGGGAGTACGCACACAAA+CGG 0.530423 4.2:+92027289 None:intergenic
CACCACCACTAAAGTTGCTC+CGG 0.536001 4.2:-92029928 MS.gene053169:CDS
AGCTGTCAATCCTTCAGGAT+TGG 0.538382 4.2:+92028897 None:intergenic
GTTTCTGAAAGATTGAAAGC+TGG 0.541448 4.2:-92028850 MS.gene053169:CDS
CTGCGAAATATGCCAACACT+TGG 0.541538 4.2:+92028962 None:intergenic
CATGTCCTATGCATACCAAA+TGG 0.544512 4.2:-92026770 MS.gene053169:CDS
GGGAAAGTGAGCAACAGCTC+GGG 0.545271 4.2:+92027272 None:intergenic
TGGGAAAGTGAGCAACAGCT+CGG 0.549510 4.2:+92027271 None:intergenic
GAACCGTGGCTTGAGAGTAA+AGG 0.552420 4.2:-92029000 MS.gene053169:CDS
ATACCGTTCCATCTAGAAAG+AGG 0.554081 4.2:+92029744 None:intergenic
AATAGGACCTTCAAAATCAA+CGG 0.556089 4.2:+92029815 None:intergenic
TTAAGCCATTTGGTATGCAT+AGG 0.559098 4.2:+92026765 None:intergenic
CGCACACAAACGGTCTTCCA+TGG 0.562813 4.2:+92027299 None:intergenic
GTTAAAGTTTGAAGAAGCCA+TGG 0.564615 4.2:-92027316 MS.gene053169:CDS
TGAATACTACCTTGCAAGAG+AGG 0.565186 4.2:+92028824 None:intergenic
GCTTTAGAAGGTATGGGAGA+TGG 0.570273 4.2:-92029873 MS.gene053169:CDS
TCTTCCACCGCCGACAATGA+CGG 0.573890 4.2:+92029905 None:intergenic
TTTACCTCCTTAACTGCCGT+GGG 0.574195 4.2:+92027252 None:intergenic
AGCTGGAGGCCTCTCTTGCA+AGG 0.574480 4.2:-92028833 MS.gene053169:intron
ATTCAGAGTCTCTTCCGCCA+TGG 0.580472 4.2:-92029961 MS.gene053169:CDS
GAAAGATGGGAACCAAGTGT+TGG 0.583229 4.2:-92028974 MS.gene053169:CDS
CGCTGTTGCTGTAAGAGTGG+AGG 0.583827 4.2:+92030001 None:intergenic
CTTTCCCACGGCAGTTAAGG+AGG 0.584441 4.2:-92027256 MS.gene053169:intron
TCTGAGAAGGCTATTGCCCA+AGG 0.586147 4.2:-92026804 MS.gene053169:CDS
GGTGGTGACGGTAGAAGCCA+TGG 0.587494 4.2:+92029944 None:intergenic
TTGCAGTTCAAATGGAGGAA+TGG 0.597693 4.2:-92026843 MS.gene053169:intron
ATCAGTCTTACCATCAATAG+GGG 0.599930 4.2:+92028921 None:intergenic
TCTGAAAGATTGAAAGCTGG+AGG 0.599953 4.2:-92028847 MS.gene053169:CDS
CCACCGCCGACAATGACGGC+CGG 0.601720 4.2:+92029909 None:intergenic
AGCTGTTGCTCACTTTCCCA+CGG 0.605457 4.2:-92027268 MS.gene053169:CDS
CATGTTTGCAGTTCAAATGG+AGG 0.608904 4.2:-92026848 MS.gene053169:intron
AGCAACTTTAGTGGTGGTGA+CGG 0.613469 4.2:+92029932 None:intergenic
TGACAGCTGCTTATGGCAAG+TGG 0.617113 4.2:-92028882 MS.gene053169:CDS
AAGACTGATACCAATCCTGA+AGG 0.623096 4.2:-92028907 MS.gene053169:CDS
GGCCGGAGCAACTTTAGTGG+TGG 0.623121 4.2:+92029926 None:intergenic
CATTTGGTATGCATAGGACA+TGG 0.629892 4.2:+92026771 None:intergenic
GCTCCGGCCGTCATTGTCGG+CGG 0.635181 4.2:-92029912 MS.gene053169:CDS
AAGCGCTGTTGCTGTAAGAG+TGG 0.643492 4.2:+92029998 None:intergenic
AGAATGGAATGTTGGAACCG+TGG 0.644899 4.2:-92029014 MS.gene053169:CDS
ACTCCTCTTTCTAGATGGAA+CGG 0.645963 4.2:-92029747 MS.gene053169:intron
AAACCTTTACTCTCAAGCCA+CGG 0.646640 4.2:+92028997 None:intergenic
CAGCAGCAGCTAGTGAAAAG+GGG 0.664557 4.2:-92027338 MS.gene053169:CDS
AAAGCTTACTTACGTCAAGG+TGG 0.684327 4.2:+92028065 None:intergenic
GTTCCATCTAGAAAGAGGAG+TGG 0.697057 4.2:+92029749 None:intergenic
AAAGATCTTGTTGTGAAACG+TGG 0.716380 4.2:-92029849 MS.gene053169:CDS
GGTGACGGTAGAAGCCATGG+CGG 0.761423 4.2:+92029947 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CCATTTAAAAATTAAAAATA+TGG + chr4.2:92029090-92029109 None:intergenic 10.0%
!!! CCATATTTTTAATTTTTAAA+TGG - chr4.2:92029087-92029106 MS.gene053169:intron 10.0%
!!! TTAATAAAAACATATTTTAC+GGG - chr4.2:92028023-92028042 MS.gene053169:intron 10.0%
!! AATTATGAATGTATTCTAAT+TGG + chr4.2:92029836-92029855 None:intergenic 15.0%
!! ATTATGAATGTATTCTAATT+GGG + chr4.2:92029835-92029854 None:intergenic 15.0%
!! GTTTATAATGAATTATTAAG+CGG - chr4.2:92028888-92028907 MS.gene053169:CDS 15.0%
!!! GAACATATTTAATTTTAACT+TGG + chr4.2:92029179-92029198 None:intergenic 15.0%
!! ATAACATGAGAATAAATTAG+AGG - chr4.2:92029609-92029628 MS.gene053169:intron 20.0%
!! TTAGTGTTTAATCAATATCT+TGG - chr4.2:92029900-92029919 MS.gene053169:CDS 20.0%
!!! ATCATTTTAGTATTGCTATA+TGG - chr4.2:92029063-92029082 MS.gene053169:intron 20.0%
!!! TAGAAGAAAATTAATGGATA+TGG + chr4.2:92028326-92028345 None:intergenic 20.0%
!!! TCATTTTAGTATTGCTATAT+GGG - chr4.2:92029064-92029083 MS.gene053169:intron 20.0%
!!! TTTTAATGACATAAAAGAGA+GGG - chr4.2:92027625-92027644 MS.gene053169:intron 20.0%
!!! TTTTTAATGACATAAAAGAG+AGG - chr4.2:92027624-92027643 MS.gene053169:intron 20.0%
! AAGTTTATGAATTTCAAGCA+CGG - chr4.2:92028407-92028426 MS.gene053169:intron 25.0%
! ATCTTTAGATGAAAATCAGA+AGG - chr4.2:92028170-92028189 MS.gene053169:CDS 25.0%
! ATTTGTATATATAGAGAGAG+CGG + chr4.2:92028954-92028973 None:intergenic 25.0%
! CAATCTATTTATTCAGTTGT+TGG - chr4.2:92029205-92029224 MS.gene053169:intron 25.0%
! CGAAGATAGAAGAAAATTAA+TGG + chr4.2:92028332-92028351 None:intergenic 25.0%
! CTAAAGATTGTGATACTTAT+GGG + chr4.2:92027132-92027151 None:intergenic 25.0%
! GTTTGATATTTGTACAATAC+CGG - chr4.2:92027476-92027495 MS.gene053169:intron 25.0%
! TTAAGAAGTTTACCCAAAAA+AGG + chr4.2:92027156-92027175 None:intergenic 25.0%
! TTATTCTCATGTTATCAGTA+TGG + chr4.2:92029604-92029623 None:intergenic 25.0%
! TTTGTTACTATTTCAAGCTT+AGG + chr4.2:92028365-92028384 None:intergenic 25.0%
!! GCATATTAACTTTGAGAAAA+TGG + chr4.2:92028740-92028759 None:intergenic 25.0%
!! TTTCTAGTACAAACCAAAAT+AGG + chr4.2:92026977-92026996 None:intergenic 25.0%
!!! AGTTGGATTATTTTTTGGTT+AGG + chr4.2:92029786-92029805 None:intergenic 25.0%
!!! GATTTTTGAGGAACTAATTA+TGG - chr4.2:92027647-92027666 MS.gene053169:intron 25.0%
!!! TGATGAGTTGGATTATTTTT+TGG + chr4.2:92029791-92029810 None:intergenic 25.0%
!!! TTCACGTTTATTTTCCAAAT+CGG + chr4.2:92028219-92028238 None:intergenic 25.0%
AAATCTTAGTAAGTCCGATT+TGG - chr4.2:92028202-92028221 MS.gene053169:intron 30.0%
AAATTGATTACCTATGTGTC+TGG - chr4.2:92029274-92029293 MS.gene053169:intron 30.0%
AATAGGACCTTCAAAATCAA+CGG + chr4.2:92026960-92026979 None:intergenic 30.0%
AATGAGTTGTTACTATCGTT+TGG - chr4.2:92027712-92027731 MS.gene053169:intron 30.0%
AATTAAACCCCTCTAATCTT+AGG + chr4.2:92028439-92028458 None:intergenic 30.0%
AATTGATTACCTATGTGTCT+GGG - chr4.2:92029275-92029294 MS.gene053169:intron 30.0%
AGAGTAAAGGTTTGAAAGAT+GGG - chr4.2:92027785-92027804 MS.gene053169:intron 30.0%
ATGAATGAAATGTGATGAGT+TGG + chr4.2:92029803-92029822 None:intergenic 30.0%
CCATAAGTATCACAATCTTT+AGG - chr4.2:92027130-92027149 MS.gene053169:intron 30.0%
CCATAAGTTTCACATTCTTT+AGG - chr4.2:92027069-92027088 MS.gene053169:intron 30.0%
CCTAAAGAATGTGAAACTTA+TGG + chr4.2:92027072-92027091 None:intergenic 30.0%
CCTAAAGATTGTGATACTTA+TGG + chr4.2:92027133-92027152 None:intergenic 30.0%
GAAAATTCCTAAGATTAGAG+GGG - chr4.2:92028429-92028448 MS.gene053169:intron 30.0%
GGAAAATTCCTAAGATTAGA+GGG - chr4.2:92028428-92028447 MS.gene053169:intron 30.0%
GTAACCAAAACAAGAAAACT+TGG + chr4.2:92028002-92028021 None:intergenic 30.0%
GTCATTCTATCTTCATTCAA+CGG - chr4.2:92028245-92028264 MS.gene053169:intron 30.0%
GTCTTATATTTCACAGATGA+TGG - chr4.2:92029741-92029760 MS.gene053169:intron 30.0%
TACAAACTGTACACTTCAAA+TGG - chr4.2:92027438-92027457 MS.gene053169:intron 30.0%
TATCAGTCTTACCATCAATA+GGG + chr4.2:92027855-92027874 None:intergenic 30.0%
TCAATTTCATAGTTGCAACA+TGG + chr4.2:92029335-92029354 None:intergenic 30.0%
TCATCTGTGAAATATAAGAC+TGG + chr4.2:92029741-92029760 None:intergenic 30.0%
TTTCAACTCTTTAAGCCATT+TGG + chr4.2:92030020-92030039 None:intergenic 30.0%
TTTGTCAATCAACATTTGCT+TGG - chr4.2:92028766-92028785 MS.gene053169:intron 30.0%
! AACTTTGAGAAAATGGCAAT+AGG + chr4.2:92028733-92028752 None:intergenic 30.0%
! AATTGTGTCGTTAAGATAGT+TGG - chr4.2:92028828-92028847 MS.gene053169:intron 30.0%
! ACTCTGAATCTGAAATTCTT+GGG + chr4.2:92026800-92026819 None:intergenic 30.0%
! ATAAAAGAGAGGGATTTTTG+AGG - chr4.2:92027635-92027654 MS.gene053169:intron 30.0%
! GGATTGCTTAACAAATTTTC+TGG - chr4.2:92028107-92028126 MS.gene053169:CDS 30.0%
! TTTTCTTCTATCTTCGATGT+TGG - chr4.2:92028336-92028355 MS.gene053169:intron 30.0%
!! CTCACGTGTTATTGTATTTT+TGG - chr4.2:92028086-92028105 MS.gene053169:CDS 30.0%
!! TGATTTTGAAGGTCCTATTT+TGG - chr4.2:92026961-92026980 MS.gene053169:intron 30.0%
!!! ACAATCTTTAGGCCTTTTTT+GGG - chr4.2:92027141-92027160 MS.gene053169:intron 30.0%
AAACAAGAAAACTTGGCTAC+TGG + chr4.2:92027995-92028014 None:intergenic 35.0%
AATACGCTGAAACCATCTTA+CGG - chr4.2:92027320-92027339 MS.gene053169:CDS 35.0%
AGAGAATTTCGTTCTTTGTC+TGG - chr4.2:92029698-92029717 MS.gene053169:intron 35.0%
AGATATTATCCCAGACACAT+AGG + chr4.2:92029287-92029306 None:intergenic 35.0%
AGATGTTAGAGAAGCTCATA+TGG - chr4.2:92028616-92028635 MS.gene053169:intron 35.0%
ATAGGACCTTCAAAATCAAC+GGG + chr4.2:92026959-92026978 None:intergenic 35.0%
ATCAATTCCTGTGTGCAAAT+AGG - chr4.2:92029127-92029146 MS.gene053169:intron 35.0%
ATCAGTCTTACCATCAATAG+GGG + chr4.2:92027854-92027873 None:intergenic 35.0%
ATTCTGATTCAACTGAACTC+TGG + chr4.2:92028152-92028171 None:intergenic 35.0%
ATTTGTTCTGTCATGCTTGT+TGG - chr4.2:92028639-92028658 MS.gene053169:intron 35.0%
CGGAAAATTCCTAAGATTAG+AGG - chr4.2:92028427-92028446 MS.gene053169:intron 35.0%
CTAACTTGAAAAAGTGACAG+TGG + chr4.2:92027521-92027540 None:intergenic 35.0%
CTCAAATCTGCAATCTAAAG+AGG - chr4.2:92027397-92027416 MS.gene053169:intron 35.0%
GAGAGTAAAGGTTTGAAAGA+TGG - chr4.2:92027784-92027803 MS.gene053169:intron 35.0%
GGTTTCGATATATACAGTGA+TGG - chr4.2:92028266-92028285 MS.gene053169:intron 35.0%
GTACAGTTTGTAACACATCA+TGG + chr4.2:92027430-92027449 None:intergenic 35.0%
GTATCAGTCTTACCATCAAT+AGG + chr4.2:92027856-92027875 None:intergenic 35.0%
GTTAAAGTTTGAAGAAGCCA+TGG - chr4.2:92029456-92029475 MS.gene053169:intron 35.0%
TATTTCGCAGTGTCAAAACT+TGG - chr4.2:92027823-92027842 MS.gene053169:intron 35.0%
TCTCCCAAAAAGAAAACAAC+AGG + chr4.2:92028050-92028069 None:intergenic 35.0%
TGTGATACTTATGGGACTAA+TGG + chr4.2:92027124-92027143 None:intergenic 35.0%
TGTGTCAGTGTTATCATGTA+TGG - chr4.2:92028976-92028995 MS.gene053169:CDS 35.0%
TTAAGCCATTTGGTATGCAT+AGG + chr4.2:92030010-92030029 None:intergenic 35.0%
TTGTAACACATCATGGATTC+AGG + chr4.2:92027423-92027442 None:intergenic 35.0%
! AAAGATCTTGTTGTGAAACG+TGG - chr4.2:92026923-92026942 MS.gene053169:intron 35.0%
! GACTCTGAATCTGAAATTCT+TGG + chr4.2:92026801-92026820 None:intergenic 35.0%
! GTTTCTGAAAGATTGAAAGC+TGG - chr4.2:92027922-92027941 MS.gene053169:intron 35.0%
! GTTTTTCCAGAATGGAATGT+TGG - chr4.2:92027750-92027769 MS.gene053169:intron 35.0%
! TCACATTCTTTAGGCTTGTT+TGG - chr4.2:92027078-92027097 MS.gene053169:intron 35.0%
! TTTTATACAACCACATGTGC+CGG + chr4.2:92027498-92027517 None:intergenic 35.0%
!! AGAGTTGGAAAAGCTTTAGA+AGG - chr4.2:92026887-92026906 MS.gene053169:intron 35.0%
!! GGAAAAGCTTTAGAAGGTAT+GGG - chr4.2:92026893-92026912 MS.gene053169:intron 35.0%
!! GTAGCCAAGTTTTCTTGTTT+TGG - chr4.2:92027995-92028014 MS.gene053169:intron 35.0%
!! GTTTTATGCTCTTTCTGAGA+AGG - chr4.2:92029955-92029974 MS.gene053169:CDS 35.0%
!! TGGAAAAGCTTTAGAAGGTA+TGG - chr4.2:92026892-92026911 MS.gene053169:intron 35.0%
!!! CACAATCTTTAGGCCTTTTT+TGG - chr4.2:92027140-92027159 MS.gene053169:intron 35.0%
!!! GATTTGGTGTTTTTCCAGAA+TGG - chr4.2:92027742-92027761 MS.gene053169:intron 35.0%
!!! GGACCTGTTGTTTTCTTTTT+GGG - chr4.2:92028044-92028063 MS.gene053169:intron 35.0%
!!! TCAATTCCCGTTGATTTTGA+AGG - chr4.2:92026950-92026969 MS.gene053169:intron 35.0%
AAACCACTCCTCTTTCTAGA+TGG - chr4.2:92027020-92027039 MS.gene053169:intron 40.0%
AAACCTTTACTCTCAAGCCA+CGG + chr4.2:92027778-92027797 None:intergenic 40.0%
AAAGCTTACTTACGTCAAGG+TGG + chr4.2:92028710-92028729 None:intergenic 40.0%
AAGACTGATACCAATCCTGA+AGG - chr4.2:92027865-92027884 MS.gene053169:intron 40.0%
ACTCCTCTTTCTAGATGGAA+CGG - chr4.2:92027025-92027044 MS.gene053169:intron 40.0%
AGGAAAGCTTACTTACGTCA+AGG + chr4.2:92028713-92028732 None:intergenic 40.0%
AGTTCAAATGGAGGAATGGT+TGG - chr4.2:92029933-92029952 MS.gene053169:CDS 40.0%
ATACCGTTCCATCTAGAAAG+AGG + chr4.2:92027031-92027050 None:intergenic 40.0%
ATGCTTCCTTATCCAAAACC+TGG + chr4.2:92028587-92028606 None:intergenic 40.0%
ATTTCGTTCTTTGTCTGGTG+AGG - chr4.2:92029703-92029722 MS.gene053169:intron 40.0%
CATGTCCTATGCATACCAAA+TGG - chr4.2:92030002-92030021 MS.gene053169:CDS 40.0%
CATGTTTGCAGTTCAAATGG+AGG - chr4.2:92029924-92029943 MS.gene053169:CDS 40.0%
CATTTGGTATGCATAGGACA+TGG + chr4.2:92030004-92030023 None:intergenic 40.0%
CCATAGTCGTATGATGATCT+AGG - chr4.2:92029642-92029661 MS.gene053169:intron 40.0%
CCTAGATCATCATACGACTA+TGG + chr4.2:92029645-92029664 None:intergenic 40.0%
CTTATGACATGTCCGTAAGA+TGG + chr4.2:92027335-92027354 None:intergenic 40.0%
GGATATTGCAATCAGTGAGT+TGG - chr4.2:92028849-92028868 MS.gene053169:CDS 40.0%
GGTCATGTTTGCAGTTCAAA+TGG - chr4.2:92029921-92029940 MS.gene053169:CDS 40.0%
TCTGAAAGATTGAAAGCTGG+AGG - chr4.2:92027925-92027944 MS.gene053169:intron 40.0%
TGAATACTACCTTGCAAGAG+AGG + chr4.2:92027951-92027970 None:intergenic 40.0%
TTGCACACAGGAATTGATGT+AGG + chr4.2:92029125-92029144 None:intergenic 40.0%
TTGCAGTTCAAATGGAGGAA+TGG - chr4.2:92029929-92029948 MS.gene053169:CDS 40.0%
! GCAATCAGTGAGTTGGATTA+GGG - chr4.2:92028856-92028875 MS.gene053169:CDS 40.0%
! GTTGTTACTATCGTTTGGTG+TGG - chr4.2:92027717-92027736 MS.gene053169:intron 40.0%
! TGCAATCAGTGAGTTGGATT+AGG - chr4.2:92028855-92028874 MS.gene053169:CDS 40.0%
!! TTCTGTTGGTGTTGTGGAAA+AGG - chr4.2:92028680-92028699 MS.gene053169:intron 40.0%
!!! GGGACCTGTTGTTTTCTTTT+TGG - chr4.2:92028043-92028062 MS.gene053169:intron 40.0%
AAGCACTTGTGAGACTGTGT+AGG + chr4.2:92027362-92027381 None:intergenic 45.0%
ACGGTTCCAACATTCCATTC+TGG + chr4.2:92027759-92027778 None:intergenic 45.0%
AGAATGGAATGTTGGAACCG+TGG - chr4.2:92027758-92027777 MS.gene053169:intron 45.0%
AGCGGCAATACATTGACAGT+AGG + chr4.2:92028936-92028955 None:intergenic 45.0%
AGCTGTCAATCCTTCAGGAT+TGG + chr4.2:92027878-92027897 None:intergenic 45.0%
ATCAGCAGCAGCTAGTGAAA+AGG - chr4.2:92029432-92029451 MS.gene053169:intron 45.0%
CCTGTGTGCAAATAGGTTGT+GGG - chr4.2:92029134-92029153 MS.gene053169:intron 45.0%
CTGCGAAATATGCCAACACT+TGG + chr4.2:92027813-92027832 None:intergenic 45.0%
GAAAGATGGGAACCAAGTGT+TGG - chr4.2:92027798-92027817 MS.gene053169:intron 45.0%
GAAGGATTGACAGCTGCTTA+TGG - chr4.2:92027883-92027902 MS.gene053169:intron 45.0%
GATCATCATACGACTATGGC+AGG + chr4.2:92029641-92029660 None:intergenic 45.0%
GTTCCATCTAGAAAGAGGAG+TGG + chr4.2:92027026-92027045 None:intergenic 45.0%
TAAGCAGCTGTCAATCCTTC+AGG + chr4.2:92027883-92027902 None:intergenic 45.0%
TCAGCAGCAGCTAGTGAAAA+GGG - chr4.2:92029433-92029452 MS.gene053169:intron 45.0%
TCCTGTGTGCAAATAGGTTG+TGG - chr4.2:92029133-92029152 MS.gene053169:intron 45.0%
TGCTTATGGCAAGTGGTCTT+TGG - chr4.2:92027897-92027916 MS.gene053169:intron 45.0%
TTGTACAATACCGGCACATG+TGG - chr4.2:92027485-92027504 MS.gene053169:intron 45.0%
TTTACCTCCTTAACTGCCGT+GGG + chr4.2:92029523-92029542 None:intergenic 45.0%
! AGCAACTTTAGTGGTGGTGA+CGG + chr4.2:92026843-92026862 None:intergenic 45.0%
!! ATCGTTTGGTGTGGCAGATT+TGG - chr4.2:92027726-92027745 MS.gene053169:intron 45.0%
!! CTGATGCTAGTTCTGCTATC+AGG + chr4.2:92029417-92029436 None:intergenic 45.0%
!! GCTTTAGAAGGTATGGGAGA+TGG - chr4.2:92026899-92026918 MS.gene053169:intron 45.0%
!!! TGAACGCCAGGTTTTGGATA+AGG - chr4.2:92028578-92028597 MS.gene053169:intron 45.0%
!!! TTTTTGGTTAGGCTGCTACG+AGG + chr4.2:92029775-92029794 None:intergenic 45.0%
!!! ATTAATAAAAACATATTTTA+CGG - chr4.2:92028022-92028041 MS.gene053169:intron 5.0%
!!! TAATTTTTATTATTTATTGT+TGG - chr4.2:92027679-92027698 MS.gene053169:intron 5.0%
ACATGGATCCTGCTTGCCTT+GGG + chr4.2:92029987-92030006 None:intergenic 50.0%
AGCTGTTGCTCACTTTCCCA+CGG - chr4.2:92029504-92029523 MS.gene053169:intron 50.0%
ATTCAGAGTCTCTTCCGCCA+TGG - chr4.2:92026811-92026830 MS.gene053169:CDS 50.0%
CAAAACCTGGCGTTCAAGAC+GGG + chr4.2:92028574-92028593 None:intergenic 50.0%
CACCACCACTAAAGTTGCTC+CGG - chr4.2:92026844-92026863 MS.gene053169:intron 50.0%
CAGCAGCAGCTAGTGAAAAG+GGG - chr4.2:92029434-92029453 MS.gene053169:intron 50.0%
CCAAAACCTGGCGTTCAAGA+CGG + chr4.2:92028575-92028594 None:intergenic 50.0%
CCCACAACCTATTTGCACAC+AGG + chr4.2:92029137-92029156 None:intergenic 50.0%
CGTTCTTTGTCTGGTGAGGT+AGG - chr4.2:92029707-92029726 MS.gene053169:intron 50.0%
CTTGGAGAGTCCCCTATTGA+TGG - chr4.2:92027841-92027860 MS.gene053169:intron 50.0%
CTTTACCTCCTTAACTGCCG+TGG + chr4.2:92029524-92029543 None:intergenic 50.0%
GAACCGTGGCTTGAGAGTAA+AGG - chr4.2:92027772-92027791 MS.gene053169:intron 50.0%
TCACTTTCCCACGGCAGTTA+AGG - chr4.2:92029513-92029532 MS.gene053169:intron 50.0%
TCTGAGAAGGCTATTGCCCA+AGG - chr4.2:92029968-92029987 MS.gene053169:CDS 50.0%
TCTTTGTCTGGTGAGGTAGG+TGG - chr4.2:92029710-92029729 MS.gene053169:intron 50.0%
TGACAGCTGCTTATGGCAAG+TGG - chr4.2:92027890-92027909 MS.gene053169:intron 50.0%
TGGGAAAGTGAGCAACAGCT+CGG + chr4.2:92029504-92029523 None:intergenic 50.0%
! AAGCGCTGTTGCTGTAAGAG+TGG + chr4.2:92026777-92026796 None:intergenic 50.0%
!! AGGGGTTTCTGTTGGTGTTG+TGG - chr4.2:92028674-92028693 MS.gene053169:intron 50.0%
!! AGGTTGTGGGCTCTGACTTT+TGG - chr4.2:92029147-92029166 MS.gene053169:intron 50.0%
!! GGTTGTGGGCTCTGACTTTT+GGG - chr4.2:92029148-92029167 MS.gene053169:intron 50.0%
ATTGTCGGCGGTGGAAGAGT+TGG - chr4.2:92026872-92026891 MS.gene053169:intron 55.0%
CGCACACAAACGGTCTTCCA+TGG + chr4.2:92029476-92029495 None:intergenic 55.0%
CGCTGTTGCTGTAAGAGTGG+AGG + chr4.2:92026774-92026793 None:intergenic 55.0%
CGTCATGGAGGGGTTTCTGT+TGG - chr4.2:92028666-92028685 MS.gene053169:intron 55.0%
CTTTCCCACGGCAGTTAAGG+AGG - chr4.2:92029516-92029535 MS.gene053169:intron 55.0%
GACATGGATCCTGCTTGCCT+TGG + chr4.2:92029988-92030007 None:intergenic 55.0%
GGGAAAGTGAGCAACAGCTC+GGG + chr4.2:92029503-92029522 None:intergenic 55.0%
TCTTCCACCGCCGACAATGA+CGG + chr4.2:92026870-92026889 None:intergenic 55.0%
TTGTTGGAGCGCGTCATGGA+GGG - chr4.2:92028655-92028674 MS.gene053169:intron 55.0%
! ATGCTTGTTGGAGCGCGTCA+TGG - chr4.2:92028651-92028670 MS.gene053169:intron 55.0%
! CCGTCTTGAACGCCAGGTTT+TGG - chr4.2:92028572-92028591 MS.gene053169:intron 55.0%
! CTCGGGAGTACGCACACAAA+CGG + chr4.2:92029486-92029505 None:intergenic 55.0%
AGCTGGAGGCCTCTCTTGCA+AGG - chr4.2:92027939-92027958 MS.gene053169:intron 60.0%
CTTGTTGGAGCGCGTCATGG+AGG - chr4.2:92028654-92028673 MS.gene053169:intron 60.0%
GACGGCCGGAGCAACTTTAG+TGG + chr4.2:92026852-92026871 None:intergenic 60.0%
GGCCGGAGCAACTTTAGTGG+TGG + chr4.2:92026849-92026868 None:intergenic 60.0%
GGCTATTGCCCAAGGCAAGC+AGG - chr4.2:92029976-92029995 MS.gene053169:CDS 60.0%
GTCTGGTGAGGTAGGTGGCT+AGG - chr4.2:92029715-92029734 MS.gene053169:intron 60.0%
GTTGCTCCGGCCGTCATTGT+CGG - chr4.2:92026857-92026876 MS.gene053169:intron 60.0%
TCTGACCCGTCTTGAACGCC+AGG - chr4.2:92028566-92028585 MS.gene053169:intron 60.0%
TGTTGGAGCGCGTCATGGAG+GGG - chr4.2:92028656-92028675 MS.gene053169:intron 60.0%
! GGTGACGGTAGAAGCCATGG+CGG + chr4.2:92026828-92026847 None:intergenic 60.0%
!! GGTGGTGACGGTAGAAGCCA+TGG + chr4.2:92026831-92026850 None:intergenic 60.0%
CCACCGCCGACAATGACGGC+CGG + chr4.2:92026866-92026885 None:intergenic 70.0%
GCTCCGGCCGTCATTGTCGG+CGG - chr4.2:92026860-92026879 MS.gene053169:intron 70.0%
CCGGCCGTCATTGTCGGCGG+TGG - chr4.2:92026863-92026882 MS.gene053169:intron 75.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 92026746 92030048 92026746 ID=MS.gene053169
chr4.2 mRNA 92026746 92030048 92026746 ID=MS.gene053169.t1;Parent=MS.gene053169
chr4.2 exon 92029748 92030048 92029748 ID=MS.gene053169.t1.exon1;Parent=MS.gene053169.t1
chr4.2 CDS 92029748 92030048 92029748 ID=cds.MS.gene053169.t1;Parent=MS.gene053169.t1
chr4.2 exon 92028834 92029051 92028834 ID=MS.gene053169.t1.exon2;Parent=MS.gene053169.t1
chr4.2 CDS 92028834 92029051 92028834 ID=cds.MS.gene053169.t1;Parent=MS.gene053169.t1
chr4.2 exon 92028078 92028206 92028078 ID=MS.gene053169.t1.exon3;Parent=MS.gene053169.t1
chr4.2 CDS 92028078 92028206 92028078 ID=cds.MS.gene053169.t1;Parent=MS.gene053169.t1
chr4.2 exon 92027257 92027388 92027257 ID=MS.gene053169.t1.exon4;Parent=MS.gene053169.t1
chr4.2 CDS 92027257 92027388 92027257 ID=cds.MS.gene053169.t1;Parent=MS.gene053169.t1
chr4.2 exon 92026746 92026859 92026746 ID=MS.gene053169.t1.exon5;Parent=MS.gene053169.t1
chr4.2 CDS 92026746 92026859 92026746 ID=cds.MS.gene053169.t1;Parent=MS.gene053169.t1
Gene Sequence

>MS.gene053169

ATGTCTTTCTCTCTCTGTAGCTTTTCCTCCACTCTTACAGCAACAGCGCTTCCCAAGAATTTCAGATTCAGAGTCTCTTCCGCCATGGCTTCTACCGTCACCACCACTAAAGTTGCTCCGGCCGTCATTGTCGGCGGTGGAAGAGTTGGAAAAGCTTTAGAAGGTATGGGAGATGGTAAAGATCTTGTTGTGAAACGTGGTGATTCAATTCCCGTTGATTTTGAAGGTCCTATTTTGGTTTGTACTAGAAATGATGATCTTGATTCTGTTCTTCAAACCACTCCTCTTTCTAGATGGAACGGTATGTAAATGCTCATTTACTTCCATAAGTTTCACATTCTTTAGGCTTGTTTGGATAGAAACAACTTAATTAAGCCATTAGTCCCATAAGTATCACAATCTTTAGGCCTTTTTTGGGTAAACTTCTTAATTAAGCACTTAAAACATAATTGTTTATCATATAAGTGCTTACATGTAAGCTATTTCTATAGCAAAAGATAAAATAAAGTCAAATTGTTTTTATGCGTTGAAAGTTATAAGCTTTTTTCATAAGCAATCTTAGAGAGCTTTTGAAAATACGCTGAAACCATCTTACGGACATGTCATAAGATTTCCTACACAGTCTCACAAGTGCTTATGCGAGTAGATAAGCTCAAATCTGCAATCTAAAGAGGCCTGAATCCATGATGTGTTACAAACTGTACACTTCAAATGGAAGTTCTATATGAGTGTTTGATATTTGTACAATACCGGCACATGTGGTTGTATAAAACCACTGTCACTTTTTCAAGTTAGTATCTGCGTTGATGTTTCTGTCTTTTCTCGTGTCAACACTTGACAAAACTACGAATTAGCACTTCTTAAAATGTTGTTTATTATTTTTAATGACATAAAAGAGAGGGATTTTTGAGGAACTAATTATGGATTTAGTTTTAATTTTTATTATTTATTGTTGGAAAAAGTACTAATGAGTTGTTACTATCGTTTGGTGTGGCAGATTTGGTGTTTTTCCAGAATGGAATGTTGGAACCGTGGCTTGAGAGTAAAGGTTTGAAAGATGGGAACCAAGTGTTGGCATATTTCGCAGTGTCAAAACTTGGAGAGTCCCCTATTGATGGTAAGACTGATACCAATCCTGAAGGATTGACAGCTGCTTATGGCAAGTGGTCTTTGGCTGTTTCTGAAAGATTGAAAGCTGGAGGCCTCTCTTGCAAGGTAGTATTCATATTTAATTAATCATATCTTGCCAGTAGCCAAGTTTTCTTGTTTTGGTTACATTAATAAAAACATATTTTACGGGACCTGTTGTTTTCTTTTTGGGAGATATTAGTGTTTTAATTCTCACGTGTTATTGTATTTTTGGATTGCTTAACAAATTTTCTGGTTTGATTACTCGACTATCACCAGAGTTCAGTTGAATCAGAATCTTTAGATGAAAATCAGAAGGCTCATGATTAAATCTTAGTAAGTCCGATTTGGAAAATAAACGTGAATTATGAGTCATTCTATCTTCATTCAACGGTTTCGATATATACAGTGATGGCATGAAATGAGTGTTTTCTCTGACTGCTGAAAATCCATATCCATTAATTTTCTTCTATCTTCGATGTTGGTTTCCTAAGCTTGAAATAGTAACAAATCTTTAGCATGTGAGAAAGTCTAAGTTTATGAATTTCAAGCACGGAAAATTCCTAAGATTAGAGGGGTTTAATTTAACAGAAAAAGCTATTATTTAAAGAACTCGCATTTTATAAATGTTCATTTTTATCAGTGTTTGTTGAGAATTTTTTCATAATTAACTTGAAATAGATAAATCATGTTCTGACCCGTCTTGAACGCCAGGTTTTGGATAAGGAAGCATTTCAAAAGCAGATGTTAGAGAAGCTCATATGGATTTGTTCTGTCATGCTTGTTGGAGCGCGTCATGGAGGGGTTTCTGTTGGTGTTGTGGAAAAGGAATTCCACCTTGACGTAAGTAAGCTTTCCTATTGCCATTTTCTCAAAGTTAATATGCACTTATTTTGTCAATCAACATTTGCTTGGAGTAAAGAAAATTTTATAGCATTCACATGCATGTATTGAAATTGTGTCGTTAAGATAGTTGGATATTGCAATCAGTGAGTTGGATTAGGGAAATTCAATGTTTATAATGAATTATTAAGCGGAGTATCTCATCTCAGAGTTACTCCTACTGTCAATGTATTGCCGCTCTCTCTATATATACAAATATTGTGTCAGTGTTATCATGTATGGACAGATGCATGTAATTATGTACATTTTTCTTCTTTTGTCTAAAATTAAAAATTCAGTGTTCTTTATCATTTTAGTATTGCTATATGGGCCATATTTTTAATTTTTAAATGGTTTTTACTTTGTCCTACATCAATTCCTGTGTGCAAATAGGTTGTGGGCTCTGACTTTTGGGTGAAACCAAGTTAAAATTAAATATGTTCAAAGTTCAATCTATTTATTCAGTTGTTGGTATCTGTTTGAAGTGTTTGATCTTGTATATAATGAGCTTGTGTTAAAAATTGATTACCTATGTGTCTGGGATAATATCTAAAAACTTTAGAGAACACAGATGAACCATGTTGCAACTATGAAATTGAACATAATGAAAAACACAATCAGAACTGAACTAACTGATTTTGCACTTTCAGTTATGTAGCCTGATAGCAGAACTAGCATCAGCAGCAGCTAGTGAAAAGGGGTTAAAGTTTGAAGAAGCCATGGAAGACCGTTTGTGTGCGTACTCCCGAGCTGTTGCTCACTTTCCCACGGCAGTTAAGGAGGTAAAGATGAAACATTTATAATATTTGCAAATTGCAGACATAGATTCAATAAGTTGCATATAACCATACTGATAACATGAGAATAAATTAGAGGTGTGTACCTGCCATAGTCGTATGATGATCTAGGATCTTTAGTCGACACAAAGAAGAAAAGACTGTGAGAGAATTTCGTTCTTTGTCTGGTGAGGTAGGTGGCTAGGCCAGTCTTATATTTCACAGATGATGGTAGAGAGACCTCGTAGCAGCCTAACCAAAAAATAATCCAACTCATCACATTTCATTCATTAAATAAAGCCCAATTAGAATACATTCATAATTTAGTGCATTATTATAAGTAAGAATTTATAAAGTTCAAAAAAATATTAGTGTTTAATCAATATCTTGGTCATGTTTGCAGTTCAAATGGAGGAATGGTTGGTTTTATGCTCTTTCTGAGAAGGCTATTGCCCAAGGCAAGCAGGATCCATGTCCTATGCATACCAAATGGCTTAAAGAGTTGAAAATTGTATAA

Protein sequence

>MS.gene053169.t1

MSFSLCSFSSTLTATALPKNFRFRVSSAMASTVTTTKVAPAVIVGGGRVGKALEGMGDGKDLVVKRGDSIPVDFEGPILVCTRNDDLDSVLQTTPLSRWNDLVFFQNGMLEPWLESKGLKDGNQVLAYFAVSKLGESPIDGKTDTNPEGLTAAYGKWSLAVSERLKAGGLSCKVLDKEAFQKQMLEKLIWICSVMLVGARHGGVSVGVVEKEFHLDLCSLIAELASAAASEKGLKFEEAMEDRLCAYSRAVAHFPTAVKEFKWRNGWFYALSEKAIAQGKQDPCPMHTKWLKELKIV