AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71727

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71727.t1 MTR_1g108510 92.544 228 17 0 1 228 1 228 2.73e-161 445
MS.gene71727.t1 MTR_3g030770 92.105 228 18 0 1 228 1 228 3.44e-159 439
MS.gene71727.t1 MTR_2g093190 89.035 228 25 0 1 228 1 228 1.36e-153 426
MS.gene71727.t1 MTR_1g108580 85.965 228 32 0 1 228 1 228 9.73e-149 413
MS.gene71727.t1 MTR_1g105920 77.376 221 40 2 1 213 1 219 2.80e-120 342
MS.gene71727.t1 MTR_8g043650 74.043 235 43 3 1 227 1 225 5.56e-118 336
MS.gene71727.t1 MTR_1g105910 71.489 235 49 3 1 227 1 225 1.80e-115 329
MS.gene71727.t1 MTR_2g030740 74.208 221 47 2 1 213 1 219 1.20e-114 327
MS.gene71727.t1 MTR_1g012570 72.851 221 50 2 1 213 1 219 1.25e-112 322
MS.gene71727.t1 MTR_3g052920 71.946 221 52 2 1 213 1 219 3.53e-111 318
MS.gene71727.t1 MTR_0121s0080 68.936 235 55 3 1 227 1 225 4.40e-110 316
MS.gene71727.t1 MTR_1g075600 64.681 235 65 3 1 227 1 225 6.97e-102 295
MS.gene71727.t1 MTR_1g077360 63.404 235 68 3 1 227 1 225 8.08e-101 292
MS.gene71727.t1 MTR_3g052870 68.778 221 40 4 1 213 1 200 3.58e-98 285
MS.gene71727.t1 MTR_1g105905 66.972 218 54 3 18 227 1 208 4.00e-98 285
MS.gene71727.t1 MTR_5g053390 62.979 235 69 4 1 227 1 225 9.11e-97 282
MS.gene71727.t1 MTR_5g045560 62.553 235 70 3 1 227 1 225 2.31e-96 281
MS.gene71727.t1 MTR_2g085280 60.426 235 75 3 1 227 1 225 7.80e-95 277
MS.gene71727.t1 MTR_5g055100 60.851 235 74 3 1 227 1 225 2.23e-94 276
MS.gene71727.t1 MTR_2g085250 60.426 235 75 3 1 227 1 225 3.30e-94 276
MS.gene71727.t1 MTR_1g106070 74.176 182 39 1 1 174 1 182 1.13e-93 272
MS.gene71727.t1 MTR_7g062350 62.443 221 64 4 16 227 27 237 2.25e-86 256
MS.gene71727.t1 MTR_0121s0100 84.848 132 20 0 1 132 1 132 1.37e-77 229
MS.gene71727.t1 MTR_3g030780 71.212 132 38 0 1 132 1 132 2.24e-64 196
MS.gene71727.t1 MTR_3g080940 53.143 175 80 1 9 183 9 181 2.57e-61 191
MS.gene71727.t1 MTR_1g075570 57.303 178 54 2 18 187 1 164 4.98e-55 173
MS.gene71727.t1 MTR_8g086290 43.030 165 84 2 5 166 8 165 3.06e-40 136
MS.gene71727.t1 MTR_3g067910 61.765 102 39 0 21 122 2 103 4.33e-40 134
MS.gene71727.t1 MTR_2g105290 39.394 165 90 2 5 166 8 165 6.79e-36 125
MS.gene71727.t1 MTR_1g108500 55.752 113 27 2 8 118 94 185 2.72e-30 114
MS.gene71727.t1 MTR_7g028448 41.176 170 88 3 5 174 8 165 3.47e-30 110
MS.gene71727.t1 MTR_4g036915 41.176 170 88 3 5 174 8 165 3.47e-30 110
MS.gene71727.t1 MTR_4g127140 37.714 175 89 4 5 166 8 175 6.15e-26 99.8
MS.gene71727.t1 MTR_3g067875 78.571 56 12 0 18 73 1 56 1.23e-25 95.5
MS.gene71727.t1 MTR_3g067915 48.936 94 48 0 33 126 3 96 2.02e-24 93.2
MS.gene71727.t1 MTR_1g063160 45.536 112 56 3 9 118 2 110 1.51e-23 93.6
MS.gene71727.t1 MTR_8g079502 56.522 69 30 0 9 77 2 70 1.05e-22 91.3
MS.gene71727.t1 MTR_1g054265 51.948 77 37 0 9 85 2 78 1.06e-22 90.9
MS.gene71727.t1 MTR_1g047550 56.522 69 30 0 9 77 2 70 1.50e-22 90.9
MS.gene71727.t1 MTR_4g131030 40.517 116 54 3 9 109 2 117 1.69e-22 91.7
MS.gene71727.t1 MTR_4g094638 43.396 106 59 1 9 113 2 107 8.63e-22 89.0
MS.gene71727.t1 MTR_8g051580 39.683 126 71 2 9 131 2 125 1.64e-21 88.2
MS.gene71727.t1 MTR_3g067870 63.934 61 22 0 16 76 83 143 1.36e-20 85.1
MS.gene71727.t1 MTR_8g046350 37.692 130 73 3 9 135 2 126 1.46e-20 85.1
MS.gene71727.t1 MTR_4g094632 38.679 106 63 1 9 114 2 105 3.38e-20 84.0
MS.gene71727.t1 MTR_5g066180 34.591 159 79 5 9 164 2 138 4.96e-20 85.5
MS.gene71727.t1 MTR_3g005530 51.471 68 33 0 9 76 2 69 6.93e-20 84.7
MS.gene71727.t1 MTR_8g033220 28.384 229 124 8 10 217 3 212 5.92e-19 82.4
MS.gene71727.t1 MTR_4g102530 52.239 67 32 0 10 76 3 69 6.29e-19 82.0
MS.gene71727.t1 MTR_3g102570 44.118 102 54 3 9 109 2 101 6.64e-19 84.0
MS.gene71727.t1 MTR_8g033220 28.384 229 124 8 10 217 3 212 7.09e-19 82.4
MS.gene71727.t1 MTR_3g452380 44.048 84 47 0 3 86 11 94 1.01e-18 82.0
MS.gene71727.t1 MTR_4g093970 56.061 66 29 0 10 75 29 94 1.19e-18 82.0
MS.gene71727.t1 MTR_1g053070 46.914 81 43 0 9 89 2 82 1.71e-18 81.6
MS.gene71727.t1 MTR_8g033270 38.679 106 63 1 9 112 2 107 1.76e-18 81.6
MS.gene71727.t1 MTR_8g022970 33.333 153 99 2 8 159 17 167 3.21e-18 79.7
MS.gene71727.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 5.51e-18 79.0
MS.gene71727.t1 MTR_4g109830 47.887 71 34 2 7 76 2 70 1.08e-17 79.3
MS.gene71727.t1 MTR_5g032520 47.059 68 36 0 9 76 2 69 1.18e-17 79.0
MS.gene71727.t1 MTR_5g032150 32.258 155 74 6 9 156 2 132 1.21e-17 79.0
MS.gene71727.t1 MTR_2g009890 47.059 68 36 0 9 76 2 69 1.35e-17 79.7
MS.gene71727.t1 MTR_2g017865 39.806 103 61 1 9 111 17 118 1.43e-17 79.3
MS.gene71727.t1 MTR_0003s0590 50.000 68 34 0 9 76 2 69 1.58e-17 79.3
MS.gene71727.t1 MTR_8g087860 48.529 68 35 0 9 76 18 85 1.82e-17 79.0
MS.gene71727.t1 MTR_7g075870 49.254 67 34 0 10 76 3 69 2.31e-17 77.8
MS.gene71727.t1 MTR_6g464720 47.826 69 35 1 9 76 2 70 2.42e-17 78.6
MS.gene71727.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 6.23e-17 77.4
MS.gene71727.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 6.74e-17 77.0
MS.gene71727.t1 MTR_7g016600 49.296 71 33 2 7 76 2 70 1.15e-16 76.6
MS.gene71727.t1 MTR_3g088615 48.571 70 34 1 9 76 2 71 1.37e-16 75.1
MS.gene71727.t1 MTR_6g015975 47.826 69 35 1 9 76 2 70 1.37e-16 76.6
MS.gene71727.t1 MTR_8g066260 44.928 69 37 1 9 76 2 70 3.84e-16 75.1
MS.gene71727.t1 MTR_1g029670 29.412 170 97 5 9 177 2 149 4.05e-16 73.9
MS.gene71727.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 4.24e-16 72.0
MS.gene71727.t1 MTR_7g075870 48.529 68 34 1 10 76 3 70 4.68e-16 74.3
MS.gene71727.t1 MTR_2g461710 53.571 56 26 0 9 64 2 57 5.61e-16 70.1
MS.gene71727.t1 MTR_5g021270 40.187 107 56 3 9 113 2 102 7.48e-16 74.3
MS.gene71727.t1 MTR_5g021270 40.187 107 56 3 9 113 2 102 7.91e-16 73.9
MS.gene71727.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 1.29e-15 73.6
MS.gene71727.t1 MTR_4g084740 47.222 72 37 1 9 79 2 73 1.81e-15 74.3
MS.gene71727.t1 MTR_7g016630 42.029 69 39 1 9 76 2 70 1.96e-15 73.6
MS.gene71727.t1 MTR_5g046790 42.029 69 39 1 9 76 2 70 2.28e-15 72.4
MS.gene71727.t1 MTR_4g109810 51.786 56 27 0 9 64 2 57 4.10e-15 72.4
MS.gene71727.t1 MTR_8g097090 44.928 69 37 1 9 76 2 70 1.02e-14 71.2
MS.gene71727.t1 MTR_3g084980 46.377 69 36 1 9 76 2 70 1.03e-14 71.2
MS.gene71727.t1 MTR_7g075850 45.714 70 36 1 9 76 2 71 1.15e-14 71.2
MS.gene71727.t1 MTR_3g113030 30.588 170 96 7 9 173 2 154 1.43e-14 70.5
MS.gene71727.t1 MTR_3g109930 31.206 141 79 3 27 159 20 150 2.20e-14 68.9
MS.gene71727.t1 MTR_4g108720 29.143 175 110 6 9 171 2 174 2.41e-14 71.2
MS.gene71727.t1 MTR_5g066960 45.614 57 31 0 9 65 2 58 4.39e-14 65.1
MS.gene71727.t1 MTR_3g437790 33.566 143 78 4 26 159 30 164 4.56e-14 68.6
MS.gene71727.t1 MTR_4g093030 30.573 157 74 5 9 135 2 153 8.24e-13 64.3
MS.gene71727.t1 MTR_4g036050 28.571 182 106 7 9 182 2 167 1.09e-12 64.7
MS.gene71727.t1 MTR_4g036050 29.730 185 107 7 9 186 2 170 1.10e-12 65.1
MS.gene71727.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.71e-12 63.5
MS.gene71727.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.84e-12 63.5
MS.gene71727.t1 MTR_4g051538 32.353 136 80 1 5 128 5 140 4.24e-12 63.9
MS.gene71727.t1 MTR_1g041615 34.951 103 58 2 20 121 17 111 5.53e-12 61.6
MS.gene71727.t1 MTR_5g041650 40.541 74 42 1 9 80 39 112 4.45e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71727.t1 AT5G60440 53.804 184 78 3 5 181 3 186 1.87e-58 187
MS.gene71727.t1 AT2G24840 48.193 166 75 4 9 168 63 223 8.86e-44 148
MS.gene71727.t1 AT1G01530 43.478 184 96 4 4 183 2 181 9.48e-40 137
MS.gene71727.t1 AT1G65360 42.308 182 98 4 5 181 3 182 1.07e-39 136
MS.gene71727.t1 AT4G36590 44.444 171 85 4 5 167 3 171 3.64e-39 135
MS.gene71727.t1 AT2G34440 36.486 148 92 2 9 156 2 147 6.84e-28 104
MS.gene71727.t1 AT3G04100 32.105 190 117 3 2 183 7 192 9.62e-26 100
MS.gene71727.t1 AT3G66656 38.583 127 74 1 9 131 2 128 8.36e-24 94.0
MS.gene71727.t1 AT1G72350 34.211 152 67 4 9 160 43 161 1.05e-21 89.7
MS.gene71727.t1 AT4G09960 37.778 135 76 4 9 137 2 134 4.26e-21 87.8
MS.gene71727.t1 AT4G09960 37.778 135 76 4 9 137 3 135 5.38e-21 88.2
MS.gene71727.t1 AT4G09960 37.778 135 76 4 9 137 2 134 5.56e-21 88.2
MS.gene71727.t1 AT4G09960 37.778 135 76 4 9 137 12 144 7.22e-21 87.8
MS.gene71727.t1 AT4G09960 37.778 135 76 4 9 137 28 160 9.21e-21 87.8
MS.gene71727.t1 AT4G24540 36.486 148 77 4 9 156 2 132 3.21e-20 85.9
MS.gene71727.t1 AT4G09960 37.879 132 74 4 9 134 97 226 3.90e-20 87.4
MS.gene71727.t1 AT1G28460 30.178 169 113 3 5 169 4 171 4.56e-20 84.3
MS.gene71727.t1 AT1G29962 29.240 171 115 2 5 169 4 174 5.14e-20 84.3
MS.gene71727.t1 AT2G45660 51.471 68 33 0 10 77 3 70 5.92e-20 83.6
MS.gene71727.t1 AT2G45650 51.471 68 33 0 9 76 2 69 1.54e-19 84.7
MS.gene71727.t1 AT2G45660 51.471 68 33 0 10 77 3 70 2.59e-19 83.2
MS.gene71727.t1 AT5G51870 53.731 67 31 0 10 76 3 69 1.04e-18 80.5
MS.gene71727.t1 AT5G51870 53.731 67 31 0 10 76 3 69 1.52e-18 80.9
MS.gene71727.t1 AT3G57230 45.588 68 37 0 9 76 2 69 1.72e-18 79.3
MS.gene71727.t1 AT2G22540 50.000 68 34 0 9 76 2 69 1.80e-18 81.6
MS.gene71727.t1 AT2G22540 50.000 68 34 0 9 76 2 69 1.80e-18 81.6
MS.gene71727.t1 AT5G10140 52.174 69 32 1 9 76 2 70 2.11e-18 79.7
MS.gene71727.t1 AT4G18960 38.053 113 68 2 2 112 11 123 2.12e-18 81.6
MS.gene71727.t1 AT5G51870 51.389 72 35 0 5 76 21 92 2.15e-18 80.5
MS.gene71727.t1 AT5G51870 53.731 67 31 0 10 76 3 69 2.75e-18 80.5
MS.gene71727.t1 AT5G10140 52.174 69 32 1 9 76 2 70 3.15e-18 79.7
MS.gene71727.t1 AT2G42830 49.333 75 36 1 2 76 12 84 3.35e-18 80.9
MS.gene71727.t1 AT5G51870 53.731 67 31 0 10 76 13 79 3.39e-18 80.5
MS.gene71727.t1 AT2G42830 49.333 75 36 1 2 76 12 84 3.42e-18 80.9
MS.gene71727.t1 AT5G10140 52.174 69 32 1 9 76 2 70 3.57e-18 79.7
MS.gene71727.t1 AT5G10140 52.174 69 32 1 9 76 2 70 3.77e-18 79.3
MS.gene71727.t1 AT4G37940 47.059 68 36 0 9 76 2 69 4.83e-18 80.1
MS.gene71727.t1 AT4G37940 47.059 68 36 0 9 76 2 69 5.50e-18 79.7
MS.gene71727.t1 AT5G62165 49.254 67 34 0 10 76 3 69 5.88e-18 78.2
MS.gene71727.t1 AT5G62165 49.254 67 34 0 10 76 3 69 5.88e-18 78.2
MS.gene71727.t1 AT5G62165 49.254 67 34 0 10 76 3 69 5.88e-18 78.2
MS.gene71727.t1 AT4G22950 50.746 67 33 0 10 76 3 69 6.22e-18 78.6
MS.gene71727.t1 AT3G58780 49.333 75 36 1 2 76 12 84 6.26e-18 80.1
MS.gene71727.t1 AT3G57230 45.588 68 37 0 9 76 2 69 6.56e-18 80.1
MS.gene71727.t1 AT3G57230 45.588 68 37 0 9 76 2 69 6.56e-18 80.1
MS.gene71727.t1 AT5G13790 51.471 68 33 0 9 76 2 69 6.94e-18 80.5
MS.gene71727.t1 AT5G13790 51.471 68 33 0 9 76 2 69 7.09e-18 80.5
MS.gene71727.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.34e-18 77.8
MS.gene71727.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.34e-18 77.8
MS.gene71727.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.34e-18 77.8
MS.gene71727.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.34e-18 77.8
MS.gene71727.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.34e-18 77.8
MS.gene71727.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.90e-18 76.3
MS.gene71727.t1 AT3G58780 49.333 75 36 1 2 76 18 90 8.01e-18 80.1
MS.gene71727.t1 AT4G37940 47.059 68 36 0 9 76 2 69 8.10e-18 78.2
MS.gene71727.t1 AT3G57390 48.529 68 35 0 9 76 2 69 8.11e-18 79.3
MS.gene71727.t1 AT3G58780 49.333 75 36 1 2 76 12 84 1.04e-17 80.1
MS.gene71727.t1 AT3G57390 48.529 68 35 0 9 76 2 69 2.07e-17 79.0
MS.gene71727.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.28e-17 77.8
MS.gene71727.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.28e-17 77.8
MS.gene71727.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.28e-17 77.8
MS.gene71727.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.33e-17 77.4
MS.gene71727.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.33e-17 77.4
MS.gene71727.t1 AT4G22950 50.746 67 33 0 10 76 3 69 2.45e-17 78.2
MS.gene71727.t1 AT4G22950 50.746 67 33 0 10 76 3 69 2.45e-17 78.2
MS.gene71727.t1 AT5G51860 50.746 67 33 0 10 76 3 69 8.25e-17 76.3
MS.gene71727.t1 AT1G26310 47.887 71 34 2 7 76 2 70 9.45e-17 77.0
MS.gene71727.t1 AT5G51860 50.746 67 33 0 10 76 3 69 1.12e-16 76.3
MS.gene71727.t1 AT3G30260 44.928 69 37 1 9 76 2 70 1.13e-16 76.6
MS.gene71727.t1 AT1G69120 47.887 71 34 2 7 76 2 70 1.47e-16 76.3
MS.gene71727.t1 AT3G61120 47.059 68 36 0 9 76 2 69 1.47e-16 76.3
MS.gene71727.t1 AT2G14210 44.928 69 37 1 9 76 2 70 1.93e-16 75.9
MS.gene71727.t1 AT5G65050 47.826 69 35 1 9 76 2 70 2.28e-16 74.3
MS.gene71727.t1 AT1G77980 50.000 72 35 1 9 79 2 73 2.46e-16 77.0
MS.gene71727.t1 AT5G60910 46.377 69 36 1 9 76 2 70 2.59e-16 75.9
MS.gene71727.t1 AT2G14210 44.928 69 37 1 9 76 2 70 2.77e-16 75.5
MS.gene71727.t1 AT5G15800 47.826 69 35 1 9 76 2 70 2.78e-16 75.9
MS.gene71727.t1 AT1G77950 47.222 72 37 1 9 79 2 73 3.22e-16 75.5
MS.gene71727.t1 AT1G77950 47.222 72 37 1 9 79 2 73 3.22e-16 75.5
MS.gene71727.t1 AT1G77950 47.222 72 37 1 9 79 2 73 3.22e-16 75.5
MS.gene71727.t1 AT1G77950 47.222 72 37 1 9 79 2 73 3.22e-16 75.5
MS.gene71727.t1 AT4G11880 48.529 68 34 1 10 76 3 70 3.49e-16 73.9
MS.gene71727.t1 AT4G11880 48.529 68 34 1 10 76 3 70 3.49e-16 73.9
MS.gene71727.t1 AT1G69120 47.887 71 34 2 7 76 2 70 4.25e-16 75.5
MS.gene71727.t1 AT5G20240 45.205 73 38 1 9 79 2 74 4.66e-16 72.8
MS.gene71727.t1 AT5G15800 47.826 69 35 1 9 76 2 70 4.69e-16 75.5
MS.gene71727.t1 AT2G22540 48.529 68 30 1 9 76 2 64 5.83e-16 74.7
MS.gene71727.t1 AT5G65050 47.826 69 35 1 9 76 2 70 6.13e-16 73.6
MS.gene71727.t1 AT5G65060 47.826 69 35 1 9 76 2 70 6.41e-16 73.6
MS.gene71727.t1 AT5G65050 47.826 69 35 1 9 76 2 70 6.49e-16 73.6
MS.gene71727.t1 AT5G20240 45.205 73 38 1 9 79 2 74 6.77e-16 73.9
MS.gene71727.t1 AT4G11880 48.529 68 34 1 10 76 3 70 7.24e-16 73.9
MS.gene71727.t1 AT4G11880 48.529 68 34 1 10 76 3 70 7.24e-16 73.9
MS.gene71727.t1 AT5G65050 47.826 69 35 1 9 76 2 70 7.41e-16 73.2
MS.gene71727.t1 AT1G22130 48.611 72 36 1 9 79 2 73 8.86e-16 75.5
MS.gene71727.t1 AT5G65060 47.826 69 35 1 9 76 2 70 9.86e-16 72.8
MS.gene71727.t1 AT5G23260 49.333 75 36 1 5 77 14 88 1.10e-15 74.3
MS.gene71727.t1 AT5G65060 47.826 69 35 1 9 76 2 70 1.12e-15 73.2
MS.gene71727.t1 AT5G23260 49.333 75 36 1 5 77 14 88 1.23e-15 74.3
MS.gene71727.t1 AT1G28450 28.824 170 113 4 5 167 4 172 1.28e-15 72.8
MS.gene71727.t1 AT3G58780 52.308 65 29 1 2 66 12 74 1.30e-15 73.9
MS.gene71727.t1 AT3G58780 52.308 65 29 1 2 66 12 74 1.76e-15 73.9
MS.gene71727.t1 AT3G02310 46.377 69 36 1 9 76 2 70 1.87e-15 72.4
MS.gene71727.t1 AT3G54340 28.372 215 126 9 9 204 2 207 1.91e-15 73.2
MS.gene71727.t1 AT5G23260 50.704 71 33 1 9 77 2 72 2.38e-15 73.2
MS.gene71727.t1 AT5G23260 50.704 71 33 1 9 77 2 72 2.47e-15 72.8
MS.gene71727.t1 AT2G03710 47.143 70 35 2 9 76 2 71 3.09e-15 71.6
MS.gene71727.t1 AT3G02310 46.377 69 36 1 9 76 2 70 6.35e-15 72.0
MS.gene71727.t1 AT2G22630 42.647 68 39 0 9 76 2 69 8.52e-15 71.2
MS.gene71727.t1 AT2G22630 42.647 68 39 0 9 76 2 69 8.52e-15 71.2
MS.gene71727.t1 AT1G24260 44.928 69 37 1 9 76 2 70 9.59e-15 71.6
MS.gene71727.t1 AT1G24260 44.928 69 37 1 9 76 2 70 9.91e-15 71.6
MS.gene71727.t1 AT5G65070 40.580 69 40 1 9 76 2 70 1.02e-14 69.3
MS.gene71727.t1 AT1G24260 44.928 69 37 1 9 76 2 70 1.06e-14 71.2
MS.gene71727.t1 AT2G03710 47.143 70 35 2 9 76 2 71 1.11e-14 71.6
MS.gene71727.t1 AT2G03710 47.143 70 35 2 9 76 2 71 1.16e-14 71.2
MS.gene71727.t1 AT5G65070 40.580 69 40 1 9 76 2 70 1.89e-14 69.7
MS.gene71727.t1 AT1G17310 50.633 79 37 1 8 86 47 123 1.94e-14 70.1
MS.gene71727.t1 AT1G71692 44.928 69 37 1 10 77 3 71 2.01e-14 70.1
MS.gene71727.t1 AT1G47760 43.284 67 38 0 9 75 2 68 2.03e-14 69.3
MS.gene71727.t1 AT1G17310 50.633 79 37 1 8 86 58 134 2.53e-14 70.1
MS.gene71727.t1 AT1G18750 42.667 75 41 1 9 81 2 76 3.09e-14 71.2
MS.gene71727.t1 AT1G18750 42.667 75 41 1 9 81 2 76 3.41e-14 71.2
MS.gene71727.t1 AT1G18750 42.667 75 41 1 9 81 2 76 3.47e-14 71.2
MS.gene71727.t1 AT5G65070 40.580 69 40 1 9 76 2 70 4.69e-14 69.3
MS.gene71727.t1 AT5G65070 40.580 69 40 1 9 76 2 70 5.40e-14 68.9
MS.gene71727.t1 AT5G65070 45.614 57 31 0 9 65 2 58 3.05e-13 67.0
MS.gene71727.t1 AT2G03060 28.824 170 96 8 9 159 2 165 6.03e-13 67.4
MS.gene71727.t1 AT2G03060 28.824 170 96 8 9 159 2 165 6.06e-13 67.4
MS.gene71727.t1 AT2G03060 28.824 170 96 8 9 159 2 165 6.06e-13 67.4
MS.gene71727.t1 AT2G03060 28.824 170 96 8 9 159 2 165 6.06e-13 67.4
MS.gene71727.t1 AT5G65080 40.580 69 40 1 9 76 9 77 1.01e-12 65.1
MS.gene71727.t1 AT5G65080 46.296 54 29 0 9 62 9 62 4.87e-12 63.2
MS.gene71727.t1 AT1G69540 43.243 74 41 1 9 81 2 75 4.90e-12 64.7
MS.gene71727.t1 AT1G69540 42.105 76 43 1 9 83 2 77 6.52e-12 64.3
MS.gene71727.t1 AT4G37435 39.437 71 42 1 9 78 2 72 7.16e-12 62.4
MS.gene71727.t1 AT1G77080 49.275 69 34 1 9 76 2 70 1.12e-11 61.6
MS.gene71727.t1 AT1G77080 49.275 69 34 1 9 76 2 70 1.26e-11 61.6
MS.gene71727.t1 AT5G49420 36.170 94 53 2 5 91 3 96 1.44e-11 63.5
MS.gene71727.t1 AT1G77080 49.275 69 34 1 9 76 2 70 2.79e-11 61.2
MS.gene71727.t1 AT5G49490 37.500 88 48 2 5 85 41 128 3.59e-11 62.0
MS.gene71727.t1 AT1G77080 49.275 69 34 1 9 76 2 70 7.38e-11 60.5

Find 49 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTTGAATTATTCAAAA+AGG 0.249457 1.1:+77569272 MS.gene71727:CDS
ATTTCAGCTTGTTGAGGATT+TGG 0.288922 1.1:-77569399 None:intergenic
TCGCAGCCTCATTTGTTTGA+TGG 0.301546 1.1:+77569459 MS.gene71727:CDS
TGGTGGGCTTGTCCGGTTGA+TGG 0.317499 1.1:+77569237 MS.gene71727:CDS
CCTCTGTTTCCTTGAGCAAA+TGG 0.356090 1.1:-77569206 None:intergenic
TCACCATGGCTTTAACAATA+TGG 0.358477 1.1:+77569494 MS.gene71727:CDS
CTCATCGCCAATCTTCTTCT+CGG 0.372729 1.1:-77569178 None:intergenic
GTCTATGACCGTATCAAGAT+TGG 0.398383 1.1:-77569034 None:intergenic
TCCGGTTGATGGGATGAATA+GGG 0.429925 1.1:+77569248 MS.gene71727:CDS
GTCCGGTTGATGGGATGAAT+AGG 0.433236 1.1:+77569247 MS.gene71727:CDS
GGTGGGCTTGTCCGGTTGAT+GGG 0.441656 1.1:+77569238 MS.gene71727:CDS
AGTGAGCTTTGCACCCTTTG+TGG 0.441727 1.1:+77568952 MS.gene71727:CDS
TCTATGACCGTATCAAGATT+GGG 0.446553 1.1:-77569033 None:intergenic
AGGAAACAGAGGCTAAGTTT+TGG 0.455034 1.1:+77569217 MS.gene71727:CDS
CATAGACCGCTATCTTTCTC+TGG 0.460785 1.1:+77569050 MS.gene71727:CDS
CTGGATGCCGAGAAGAAGAT+TGG 0.460994 1.1:+77569171 MS.gene71727:CDS
GTTGAGGATTTGGCTGATGA+TGG 0.467757 1.1:-77569389 None:intergenic
CTTTCTCAAAGCGCCGTAGC+GGG 0.471817 1.1:+77568914 MS.gene71727:CDS
TCCCTATTCATCCCATCAAC+CGG 0.481029 1.1:-77569249 None:intergenic
AGCAGCATCTGCACCACAAA+GGG 0.492573 1.1:-77568965 None:intergenic
GCCTTTCTTTCCGCTCGACA+TGG 0.505646 1.1:-77568833 None:intergenic
GCCATGTCGAGCGGAAAGAA+AGG 0.510063 1.1:+77568832 None:intergenic
AGCATTGAGTTCACGAACAT+TGG 0.517207 1.1:-77569124 None:intergenic
ACAAAGGGTGCAAAGCTCAC+TGG 0.525840 1.1:-77568950 None:intergenic
ATCAATCCATCAAACAAATG+AGG 0.538978 1.1:-77569465 None:intergenic
TGGTCACCCCAATCTTGATA+CGG 0.553864 1.1:+77569026 MS.gene71727:CDS
TGTATTCTCACCTAGTGGTA+AGG 0.555867 1.1:+77568993 MS.gene71727:CDS
GGAAACATTTCAGCTTGTTG+AGG 0.562544 1.1:-77569405 None:intergenic
ACACCATATTGTTAAAGCCA+TGG 0.572464 1.1:-77569497 None:intergenic
ATCAAGATTGGGGTGACCAA+AGG 0.581678 1.1:-77569022 None:intergenic
CGAGAAGAAGATTGGCGATG+AGG 0.586593 1.1:+77569179 MS.gene71727:CDS
TGAGGTGAGCCATTTGCTCA+AGG 0.593970 1.1:+77569197 MS.gene71727:CDS
ACTTTCTCAAAGCGCCGTAG+CGG 0.594013 1.1:+77568913 MS.gene71727:CDS
TCGAGCGGAAAGAAAGGCCG+AGG 0.597603 1.1:+77568838 MS.gene71727:CDS
TGGCACCATGCAACTCATTG+AGG 0.610323 1.1:+77569089 MS.gene71727:CDS
ATGATGGAGATAAATGTTCG+AGG 0.611297 1.1:-77569373 None:intergenic
CTCGTTGTATTCTCACCTAG+TGG 0.611491 1.1:+77568988 MS.gene71727:CDS
AAGGAAAATACCTTACCACT+AGG 0.624124 1.1:-77569003 None:intergenic
CTTTCTTGAAGATCCCGCTA+CGG 0.625983 1.1:-77568927 None:intergenic
GAGCAGCATCTGCACCACAA+AGG 0.629318 1.1:-77568966 None:intergenic
GTGAGCCTCAATGAGTTGCA+TGG 0.629855 1.1:-77569094 None:intergenic
TGTGCTTAAGCCATGTCGAG+CGG 0.639376 1.1:+77568823 None:intergenic
CTATGACCGTATCAAGATTG+GGG 0.641126 1.1:-77569032 None:intergenic
GACTCAAATCAACAACACGC+TGG 0.644948 1.1:+77569152 MS.gene71727:CDS
GTTCACGAACATTGGCATTG+TGG 0.649124 1.1:-77569116 None:intergenic
CCATTTGCTCAAGGAAACAG+AGG 0.656067 1.1:+77569206 MS.gene71727:CDS
GGGGTACCAGAGAAAGATAG+CGG 0.705690 1.1:-77569056 None:intergenic
ATATTGTTAAAGCCATGGTG+AGG 0.709548 1.1:-77569492 None:intergenic
GGATTGATGATGCCTCACCA+TGG 0.728509 1.1:+77569480 MS.gene71727:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAACTTGAATTATTCAAAA+AGG + chr1.1:77569272-77569291 MS.gene71727:CDS 20.0%
!!! ATAGAATTTTGAAAAAATCG+TGG - chr1.1:77569432-77569451 None:intergenic 20.0%
! TGAATTATTCAAAAAGGCTT+TGG + chr1.1:77569278-77569297 MS.gene71727:CDS 25.0%
!!! TCTTTTTCATCTCAATCTTT+TGG - chr1.1:77568867-77568886 None:intergenic 25.0%
ATCAATCCATCAAACAAATG+AGG - chr1.1:77569468-77569487 None:intergenic 30.0%
! ATTATTCAAAAAGGCTTTGG+AGG + chr1.1:77569281-77569300 MS.gene71727:CDS 30.0%
!! GAATTTTGAAAAAATCGTGG+TGG - chr1.1:77569429-77569448 None:intergenic 30.0%
!!! CAAACTCATCCATTTTTTGT+TGG + chr1.1:77569339-77569358 MS.gene71727:CDS 30.0%
AAGGAAAATACCTTACCACT+AGG - chr1.1:77569006-77569025 None:intergenic 35.0%
ACACCATATTGTTAAAGCCA+TGG - chr1.1:77569500-77569519 None:intergenic 35.0%
ATATTGTTAAAGCCATGGTG+AGG - chr1.1:77569495-77569514 None:intergenic 35.0%
TCTATGACCGTATCAAGATT+GGG - chr1.1:77569036-77569055 None:intergenic 35.0%
! ATGATGGAGATAAATGTTCG+AGG - chr1.1:77569376-77569395 None:intergenic 35.0%
!! AGTGGTAAGGTATTTTCCTT+TGG + chr1.1:77569006-77569025 MS.gene71727:CDS 35.0%
!! ATTTCAGCTTGTTGAGGATT+TGG - chr1.1:77569402-77569421 None:intergenic 35.0%
!! TCACCATGGCTTTAACAATA+TGG + chr1.1:77569494-77569513 MS.gene71727:CDS 35.0%
CTATGACCGTATCAAGATTG+GGG - chr1.1:77569035-77569054 None:intergenic 40.0%
GTCTATGACCGTATCAAGAT+TGG - chr1.1:77569037-77569056 None:intergenic 40.0%
TGTATTCTCACCTAGTGGTA+AGG + chr1.1:77568993-77569012 MS.gene71727:CDS 40.0%
! AGCATTGAGTTCACGAACAT+TGG - chr1.1:77569127-77569146 None:intergenic 40.0%
! AGGAAACAGAGGCTAAGTTT+TGG + chr1.1:77569217-77569236 MS.gene71727:CDS 40.0%
!! AAACAGAGGCTAAGTTTTGG+TGG + chr1.1:77569220-77569239 MS.gene71727:CDS 40.0%
!! AACAGAGGCTAAGTTTTGGT+GGG + chr1.1:77569221-77569240 MS.gene71727:CDS 40.0%
!! GAAGCGTTGCCAACAAAAAA+TGG - chr1.1:77569351-77569370 None:intergenic 40.0%
!! GGAAACATTTCAGCTTGTTG+AGG - chr1.1:77569408-77569427 None:intergenic 40.0%
ATCAAGATTGGGGTGACCAA+AGG - chr1.1:77569025-77569044 None:intergenic 45.0%
CATAGACCGCTATCTTTCTC+TGG + chr1.1:77569050-77569069 MS.gene71727:CDS 45.0%
CCATTTGCTCAAGGAAACAG+AGG + chr1.1:77569206-77569225 MS.gene71727:CDS 45.0%
CCTCTGTTTCCTTGAGCAAA+TGG - chr1.1:77569209-77569228 None:intergenic 45.0%
CTCATCGCCAATCTTCTTCT+CGG - chr1.1:77569181-77569200 None:intergenic 45.0%
CTCGTTGTATTCTCACCTAG+TGG + chr1.1:77568988-77569007 MS.gene71727:CDS 45.0%
CTTTCTTGAAGATCCCGCTA+CGG - chr1.1:77568930-77568949 None:intergenic 45.0%
GACTCAAATCAACAACACGC+TGG + chr1.1:77569152-77569171 MS.gene71727:CDS 45.0%
GTTCACGAACATTGGCATTG+TGG - chr1.1:77569119-77569138 None:intergenic 45.0%
GTTGAGGATTTGGCTGATGA+TGG - chr1.1:77569392-77569411 None:intergenic 45.0%
TCCCTATTCATCCCATCAAC+CGG - chr1.1:77569252-77569271 None:intergenic 45.0%
TCGCAGCCTCATTTGTTTGA+TGG + chr1.1:77569459-77569478 MS.gene71727:CDS 45.0%
TGGTCACCCCAATCTTGATA+CGG + chr1.1:77569026-77569045 MS.gene71727:CDS 45.0%
! TCTCAATCTTTTGGCGACCT+CGG - chr1.1:77568858-77568877 None:intergenic 45.0%
!! TCCGGTTGATGGGATGAATA+GGG + chr1.1:77569248-77569267 MS.gene71727:CDS 45.0%
!!! ATGGTGCCATTGTTTTGTGG+GGG - chr1.1:77569078-77569097 None:intergenic 45.0%
!!! CATGGTGCCATTGTTTTGTG+GGG - chr1.1:77569079-77569098 None:intergenic 45.0%
!!! GCATGGTGCCATTGTTTTGT+GGG - chr1.1:77569080-77569099 None:intergenic 45.0%
!!! TAAGTTTTGGTGGGCTTGTC+CGG + chr1.1:77569230-77569249 MS.gene71727:CDS 45.0%
!!! TGCATGGTGCCATTGTTTTG+TGG - chr1.1:77569081-77569100 None:intergenic 45.0%
AGCAGCATCTGCACCACAAA+GGG - chr1.1:77568968-77568987 None:intergenic 50.0%
AGTGAGCTTTGCACCCTTTG+TGG + chr1.1:77568952-77568971 MS.gene71727:CDS 50.0%
CGAGAAGAAGATTGGCGATG+AGG + chr1.1:77569179-77569198 MS.gene71727:CDS 50.0%
CTGGATGCCGAGAAGAAGAT+TGG + chr1.1:77569171-77569190 MS.gene71727:CDS 50.0%
CTGGTACCCCCACAAAACAA+TGG + chr1.1:77569069-77569088 MS.gene71727:CDS 50.0%
GTGAGCCTCAATGAGTTGCA+TGG - chr1.1:77569097-77569116 None:intergenic 50.0%
TGAGGTGAGCCATTTGCTCA+AGG + chr1.1:77569197-77569216 MS.gene71727:CDS 50.0%
TGGCACCATGCAACTCATTG+AGG + chr1.1:77569089-77569108 MS.gene71727:CDS 50.0%
! ACAAAGGGTGCAAAGCTCAC+TGG - chr1.1:77568953-77568972 None:intergenic 50.0%
! GGGGTACCAGAGAAAGATAG+CGG - chr1.1:77569059-77569078 None:intergenic 50.0%
!! ACTTTCTCAAAGCGCCGTAG+CGG + chr1.1:77568913-77568932 MS.gene71727:CDS 50.0%
!! GGATTGATGATGCCTCACCA+TGG + chr1.1:77569480-77569499 MS.gene71727:CDS 50.0%
!! GTCCGGTTGATGGGATGAAT+AGG + chr1.1:77569247-77569266 MS.gene71727:CDS 50.0%
GAGCAGCATCTGCACCACAA+AGG - chr1.1:77568969-77568988 None:intergenic 55.0%
!! CTTTCTCAAAGCGCCGTAGC+GGG + chr1.1:77568914-77568933 MS.gene71727:CDS 55.0%
TCGAGCGGAAAGAAAGGCCG+AGG + chr1.1:77568838-77568857 MS.gene71727:CDS 60.0%
! GGTGGGCTTGTCCGGTTGAT+GGG + chr1.1:77569238-77569257 MS.gene71727:CDS 60.0%
!! TGGTGGGCTTGTCCGGTTGA+TGG + chr1.1:77569237-77569256 MS.gene71727:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 77568835 77569521 77568835 ID=MS.gene71727
chr1.1 mRNA 77568835 77569521 77568835 ID=MS.gene71727.t1;Parent=MS.gene71727
chr1.1 exon 77568835 77569521 77568835 ID=MS.gene71727.t1.exon1;Parent=MS.gene71727.t1
chr1.1 CDS 77568835 77569521 77568835 ID=cds.MS.gene71727.t1;Parent=MS.gene71727.t1
Gene Sequence

>MS.gene71727

ATGTCGAGCGGAAAGAAAGGCCGAGGTCGCCAAAAGATTGAGATGAAAAAGATGAGCAACGAGAGCAACTTGCAAGTTACTTTCTCAAAGCGCCGTAGCGGGATCTTCAAGAAAGCCAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTCGTTGTATTCTCACCTAGTGGTAAGGTATTTTCCTTTGGTCACCCCAATCTTGATACGGTCATAGACCGCTATCTTTCTCTGGTACCCCCACAAAACAATGGCACCATGCAACTCATTGAGGCTCACCACAATGCCAATGTTCGTGAACTCAATGCTCAGATGACTCAAATCAACAACACGCTGGATGCCGAGAAGAAGATTGGCGATGAGGTGAGCCATTTGCTCAAGGAAACAGAGGCTAAGTTTTGGTGGGCTTGTCCGGTTGATGGGATGAATAGGGATCAACTTGAATTATTCAAAAAGGCTTTGGAGGAGCTTAAGAAACTTGTAATTCAGCATGCTGCAACTCAAACTCATCCATTTTTTGTTGGCAACGCTTCTTCCTCGAACATTTATCTCCATCATCAGCCAAATCCTCAACAAGCTGAAATGTTTCCACCACGATTTTTTCAAAATTCTATGTTGCAATCGCAGCCTCATTTGTTTGATGGATTGATGATGCCTCACCATGGCTTTAACAATATGGTGTAA
Protein sequence

>MS.gene71727.t1

MSSGKKGRGRQKIEMKKMSNESNLQVTFSKRRSGIFKKASELCTLCGADAALVVFSPSGKVFSFGHPNLDTVIDRYLSLVPPQNNGTMQLIEAHHNANVRELNAQMTQINNTLDAEKKIGDEVSHLLKETEAKFWWACPVDGMNRDQLELFKKALEELKKLVIQHAATQTHPFFVGNASSSNIYLHHQPNPQQAEMFPPRFFQNSMLQSQPHLFDGLMMPHHGFNNMV