AlfalfaGEDB | MS.gene71729

M. sativa cultivar XinJiangDaYe / MS.gene71729

KEGG: -
GO: GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0044212 GO:0045893 GO:0045935 GO:0045944 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71729.t1	XP_003592558.1	94.3	228	13	0	1	228	1	228	3.30E-120	441

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71729.t1	Q9FKK2	53.8	184	78	3	5	181	3	186	5.0e-45	182.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71729.t1	G7IAT8	94.3	228	13	0	1	228	1	228	2.4e-120	441.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene71729.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene71729	MS.gene22094	PPI
MS.gene71729	MS.gene068836	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71729.t1	MTR_1g108510	94.298	228	13	0	1	228	1	228	2.51e-165	455
MS.gene71729.t1	MTR_3g030770	92.544	228	17	0	1	228	1	228	5.44e-161	444
MS.gene71729.t1	MTR_2g093190	89.035	228	25	0	1	228	1	228	1.68e-153	425
MS.gene71729.t1	MTR_1g108580	87.719	228	28	0	1	228	1	228	2.97e-151	419
MS.gene71729.t1	MTR_1g105920	77.828	221	39	2	1	213	1	219	6.44e-120	341
MS.gene71729.t1	MTR_8g043650	74.892	231	48	2	1	223	1	229	8.63e-119	338
MS.gene71729.t1	MTR_1g105910	71.915	235	48	3	1	227	1	225	1.58e-115	330
MS.gene71729.t1	MTR_2g030740	74.208	221	47	2	1	213	1	219	4.00e-114	326
MS.gene71729.t1	MTR_1g012570	73.303	221	49	2	1	213	1	219	1.53e-112	322
MS.gene71729.t1	MTR_3g052920	72.851	221	50	2	1	213	1	219	5.80e-112	320

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71729.t1	AT5G60440	53.514	185	79	3	4	181	2	186	1.19e-58	187
MS.gene71729.t1	AT2G24840	48.193	166	75	4	9	168	63	223	3.29e-43	146
MS.gene71729.t1	AT1G01530	44.565	184	94	4	4	183	2	181	5.54e-40	138
MS.gene71729.t1	AT4G36590	44.767	172	85	4	4	167	2	171	7.88e-39	135
MS.gene71729.t1	AT1G65360	41.530	183	100	4	4	181	2	182	8.42e-39	134
MS.gene71729.t1	AT2G34440	37.162	148	91	2	9	156	2	147	5.26e-27	102
MS.gene71729.t1	AT3G04100	31.579	190	118	3	2	183	7	192	4.10e-25	98.2
MS.gene71729.t1	AT3G66656	40.157	127	72	1	9	131	2	128	2.17e-24	95.5
MS.gene71729.t1	AT4G09960	38.971	136	73	4	9	137	2	134	1.03e-21	89.7
MS.gene71729.t1	AT4G09960	38.971	136	73	4	9	137	3	135	1.45e-21	89.7

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Find 49 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGAAAATACCTTTCCACT+AGG	0.627897	1.1:-77573460	None:intergenic
ACACCATATTATTGAAGCCA+TGG	0.549763	1.1:-77573954	None:intergenic
ACTTTCTCAAAGCGCCGTAA+CGG	0.489334	1.1:+77573370	MS.gene71729:CDS
AGCAGCATCTGCACCACAAA+GGG	0.494828	1.1:-77573422	None:intergenic
AGCATTGAGTTCACGAACGT+TGG	0.603238	1.1:-77573581	None:intergenic
AGGAAACGGAGGCTAAGTTT+TGG	0.457330	1.1:+77573674	MS.gene71729:CDS
AGTGAGCTTTGCACCCTTTG+TGG	0.471832	1.1:+77573409	MS.gene71729:CDS
ATATTATTGAAGCCATGGTG+AGG	0.642989	1.1:-77573949	None:intergenic
ATCAAGATTGGGGTGACCAA+AGG	0.581678	1.1:-77573479	None:intergenic
ATGATGGAGATAAATGTTCG+AGG	0.611297	1.1:-77573830	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGATCCATCAAACAAATG+AGG	-	chr1.1:77573925-77573944	None:intergenic	30.0%
AAGGAAAATACCTTTCCACT+AGG	-	chr1.1:77573463-77573482	None:intergenic	35.0%
ACACCATATTATTGAAGCCA+TGG	-	chr1.1:77573957-77573976	None:intergenic	35.0%
ATATTATTGAAGCCATGGTG+AGG	-	chr1.1:77573952-77573971	None:intergenic	35.0%
TCACCATGGCTTCAATAATA+TGG	+	chr1.1:77573951-77573970	MS.gene71729:CDS	35.0%
TCTATGACCGTATCAAGATT+GGG	-	chr1.1:77573493-77573512	None:intergenic	35.0%
CTATGACCGTATCAAGATTG+GGG	-	chr1.1:77573492-77573511	None:intergenic	40.0%
GTCTATGACCGTATCAAGAT+TGG	-	chr1.1:77573494-77573513	None:intergenic	40.0%
TTGCAGCCTCATTTGTTTGA+TGG	+	chr1.1:77573916-77573935	MS.gene71729:CDS	40.0%
ATCAAGATTGGGGTGACCAA+AGG	-	chr1.1:77573482-77573501	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	77573292	77573978	77573292	ID=MS.gene71729
chr1.1	mRNA	77573292	77573978	77573292	ID=MS.gene71729.t1;Parent=MS.gene71729
chr1.1	exon	77573292	77573978	77573292	ID=MS.gene71729.t1.exon1;Parent=MS.gene71729.t1
chr1.1	CDS	77573292	77573978	77573292	ID=cds.MS.gene71729.t1;Parent=MS.gene71729.t1

Gene Sequence

>MS.gene71729

ATGTCGAGTGCAAGGAAAGGCCGAGGCCGCCAAAAGATTGAGATGAAAAAGATGAGCAACGAGAGCAACTTGCAAGTTACTTTCTCAAAGCGCCGTAACGGGCTCTTCAAGAAGGTCAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTAGTTGTATTCTCGCCTAGTGGAAAGGTATTTTCCTTTGGTCACCCCAATCTTGATACGGTCATAGACCGCTATCTTTCTCTGGTACCACCACAAAACAACGGCACCATGCAACTCATTGAGGCTCACCGCAATGCCAACGTTCGTGAACTCAATGCTCAGATGACTCAAATCAACAACACGCTGGATGCCGAGAAAAAGATTGGCGATGAGCTGAGCCATTTGCTCAAGGAAACGGAGGCTAAGTTTTGGTGGGCTTGTCCGGTTGATGGGATGAATAGGGATCAACTTGAATTATTCAAAAAGGCTTTGGAGGAGCTTAAGAAACTTGTAATTCAGCATGCTGCAACTCAAACTCATCCATTTTTTGTTGGCAACGCTTCTTCCTCGAACATTTATCTCCATCATCAGCCAAATGCTCAACAAGTTGAAATGTTGCCACCACAATTTTTTCAAAACCCTATGTTGCAATTGCAGCCTCATTTGTTTGATGGATCAATGATGCCTCACCATGGCTTCAATAATATGGTGTAA

Protein sequence

>MS.gene71729.t1

MSSARKGRGRQKIEMKKMSNESNLQVTFSKRRNGLFKKVSELCTLCGADAALVVFSPSGKVFSFGHPNLDTVIDRYLSLVPPQNNGTMQLIEAHRNANVRELNAQMTQINNTLDAEKKIGDELSHLLKETEAKFWWACPVDGMNRDQLELFKKALEELKKLVIQHAATQTHPFFVGNASSSNIYLHHQPNAQQVEMLPPQFFQNPMLQLQPHLFDGSMMPHHGFNNMV