AlfalfaGEDB | MS.gene71851

M. sativa cultivar XinJiangDaYe / MS.gene71851

KEGG: -
GO: GO:0003674 GO:0005488 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0030001 GO:0043167 GO:0043169 GO:0046872 GO:0051179 GO:0051234
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71851.t1	XP_013470200.1	94.3	105	5	1	3	106	20	124	1.20E-40	175.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71851.t1	A0A072VS20	94.3	105	5	1	3	106	20	124	8.6e-41	175.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene053226	MS.gene71851	0.800868	1.18E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71851.t1	MTR_1g111150	94.286	105	5	1	3	106	20	124	2.07e-54	166
MS.gene71851.t1	MTR_5g055200	67.961	103	31	1	2	104	19	119	2.73e-42	135
MS.gene71851.t1	MTR_5g055200	78.846	52	11	0	2	53	19	70	2.47e-22	84.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71851.t1	AT1G68585	49.451	91	38	3	8	92	24	112	4.09e-19	76.3

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Find 20 sgRNAs with CRISPR-Local

Find 47 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGAAGGTGATACTTACATTT+AGG	0.262994	1.3:+75794013	MS.gene71851:CDS
AGCAGAGACAGAGTCAATTG+TGG	0.625282	1.3:+75793975	MS.gene71851:intron
ATAATGGCAAATTTAGGGGA+AGG	0.529849	1.3:-75794096	None:intergenic
CCCAGAAAGAGGAAAACTCT+TGG	0.478273	1.3:-75793162	None:intergenic
CGGATATTCCGCTCATCCAG+TGG	0.579718	1.3:+75794123	MS.gene71851:CDS
CGTTTGATAATGGCAAATTT+AGG	0.131684	1.3:-75794102	None:intergenic
CTAAATTTGCCATTATCAAA+CGG	0.468003	1.3:+75794103	MS.gene71851:CDS
CTAATTAACCACTGGATGAG+CGG	0.609688	1.3:-75794131	None:intergenic
GCAAGACTAGTCCCAGAAAG+AGG	0.539833	1.3:-75793173	None:intergenic
GCGGAATATCCGTTTGATAA+TGG	0.404318	1.3:-75794112	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAGGTGATACTTACATTT+AGG	+	chr1.3:75794013-75794032	MS.gene71851:CDS	30.0%
AGGATATCAAAAACAACTGT+TGG	+	chr1.3:75794033-75794052	MS.gene71851:CDS	30.0%
CTGAAAAATTATAGATACGG+GGG	-	chr1.3:75793957-75793976	None:intergenic	30.0%
GCTGAAAAATTATAGATACG+GGG	-	chr1.3:75793958-75793977	None:intergenic	30.0%
ATAATGGCAAATTTAGGGGA+AGG	-	chr1.3:75794099-75794118	None:intergenic	35.0%
CAAGCTAGAGGAATGTTATA+GGG	+	chr1.3:75793664-75793683	MS.gene71851:intron	35.0%
CAGTAGCAACATAAACAGTA+AGG	-	chr1.3:75793610-75793629	None:intergenic	35.0%
GGTGAATGTATTGGAAAAGA+AGG	+	chr1.3:75793996-75794015	MS.gene71851:CDS	35.0%
GTCAATTGTGGTGAATGTAT+TGG	+	chr1.3:75793987-75794006	MS.gene71851:CDS	35.0%
TCTATTTGCTTTGCAAGAAG+AGG	+	chr1.3:75793552-75793571	MS.gene71851:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	75793158	75794149	75793158	ID=MS.gene71851
chr1.3	mRNA	75793158	75794149	75793158	ID=MS.gene71851.t1;Parent=MS.gene71851
chr1.3	exon	75793158	75793223	75793158	ID=MS.gene71851.t1.exon1;Parent=MS.gene71851.t1
chr1.3	CDS	75793158	75793223	75793158	ID=cds.MS.gene71851.t1;Parent=MS.gene71851.t1
chr1.3	exon	75793322	75793403	75793322	ID=MS.gene71851.t1.exon2;Parent=MS.gene71851.t1
chr1.3	CDS	75793322	75793403	75793322	ID=cds.MS.gene71851.t1;Parent=MS.gene71851.t1
chr1.3	exon	75793977	75794149	75793977	ID=MS.gene71851.t1.exon3;Parent=MS.gene71851.t1
chr1.3	CDS	75793977	75794149	75793977	ID=cds.MS.gene71851.t1;Parent=MS.gene71851.t1

Gene Sequence

>MS.gene71851

ATGTCCAAGAGTTTTCCTCTTTCTGGGACTAGTCTTGCATCTTTGGAGTCTTTGTCACTGCCACTGGTATGTAGTTTTGAACCTTTTACTGTATTTTGAGTTTTGAAATGAGCTTGAATTTCTATATATATAGTGTTTAATGGTGATTGTTTTGTTGAGAACAGGTGCAGGAAGTTGTTCTTTCAGCAGATATGCAATGTGAAACCTGCCAGAAGAGAGTTGCTGACATTATTACAAAAATGAATGGTAGTAAGCTTGTTTCTGTATCATTTTTGTTCTGTTAAATAAGGAGATATCATGTATGGCTGGCTATATGTGTTGCACATGATTGAGAAATTGTTGATTGATTTTAATGCTCTATGTGAAAATTGCTTTCTTCAAATCTCAATATTCCTCTATTTGCTTTGCAAGAAGAGGTTAAAGAAGACAGAGAGGAAAAGAGCTGTGGTCCTTACTGTTTATGTTGCTACTGTATAATTTATAAGCCCTGCATGTGTTTTTGGCTGCAAGCTAGAGGAATGTTATAGGGCTATAGTGCTGATATCTATGACTTAAATTACTGTTATTATTTACCTTACAATTATTGTTATTTACTGTTAAATCTTCTGTTTTTTTTAGAAACTTTATTTATCTTTCACTGATTATATACATGGTATCTTATAAGATATCTGAACTTATGATTCTGATGTGAGTTTAGCAGAACTTAGTATAAAACACATTTTCTGTTTTATACTAAAGTGTAATGAATTTTGTGATGATGTTTATGTTATTTCTCTTGTTAGCTCTAATACATGTTCCCCCGTATCTATAATTTTTCAGCAGAGACAGAGTCAATTGTGGTGAATGTATTGGAAAAGAAGGTGATACTTACATTTAGGATATCAAAAACAACTGTTGGTAAATTAATCTCAAAGAAAGTTACGCCATTAAACAAGACTCCTTCCCCTAAATTTGCCATTATCAAACGGATATTCCGCTCATCCAGTGGTTAA

Protein sequence

>MS.gene71851.t1

MSKSFPLSGTSLASLESLSLPLVQEVVLSADMQCETCQKRVADIITKMNAETESIVVNVLEKKVILTFRISKTTVGKLISKKVTPLNKTPSPKFAIIKRIFRSSSG