Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71896.t1 | XP_003608787.1 | 98.9 | 441 | 5 | 0 | 1 | 441 | 1 | 441 | 3.60E-248 | 867.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71896.t1 | Q9LNA5 | 68.6 | 436 | 133 | 2 | 8 | 441 | 8 | 441 | 8.5e-166 | 584.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71896.t1 | G7JK72 | 98.9 | 441 | 5 | 0 | 1 | 441 | 1 | 441 | 2.6e-248 | 867.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054343 | MS.gene71896 | -0.810899 | 9.16E-51 | -1.69E-46 |
| MS.gene056266 | MS.gene71896 | -0.848107 | 7.57E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71896.t1 | MTR_4g101950 | 98.866 | 441 | 5 | 0 | 1 | 441 | 1 | 441 | 0.0 | 909 |
| MS.gene71896.t1 | MTR_5g011580 | 76.644 | 441 | 103 | 0 | 1 | 441 | 1 | 441 | 0.0 | 717 |
| MS.gene71896.t1 | MTR_5g047260 | 52.036 | 442 | 195 | 5 | 8 | 441 | 19 | 451 | 4.35e-151 | 437 |
| MS.gene71896.t1 | MTR_7g022470 | 50.109 | 459 | 198 | 6 | 3 | 441 | 4 | 451 | 1.41e-150 | 435 |
| MS.gene71896.t1 | MTR_7g028050 | 49.330 | 448 | 205 | 5 | 8 | 441 | 3 | 442 | 3.15e-146 | 424 |
| MS.gene71896.t1 | MTR_3g088885 | 47.439 | 449 | 209 | 9 | 3 | 431 | 6 | 447 | 2.50e-132 | 389 |
| MS.gene71896.t1 | MTR_1g029520 | 46.829 | 410 | 178 | 7 | 22 | 399 | 254 | 655 | 8.86e-122 | 370 |
| MS.gene71896.t1 | MTR_5g047260 | 53.614 | 332 | 146 | 3 | 8 | 331 | 19 | 350 | 1.54e-118 | 350 |
| MS.gene71896.t1 | MTR_5g015170 | 41.627 | 418 | 207 | 6 | 9 | 391 | 12 | 427 | 8.00e-105 | 320 |
| MS.gene71896.t1 | MTR_5g047260 | 53.265 | 291 | 128 | 3 | 8 | 290 | 19 | 309 | 4.53e-100 | 301 |
| MS.gene71896.t1 | MTR_7g028050 | 48.204 | 334 | 159 | 4 | 114 | 441 | 14 | 339 | 1.18e-99 | 301 |
| MS.gene71896.t1 | MTR_4g097380 | 39.618 | 419 | 226 | 5 | 9 | 400 | 31 | 449 | 5.49e-98 | 302 |
| MS.gene71896.t1 | MTR_1g012740 | 31.538 | 130 | 82 | 2 | 234 | 362 | 30 | 153 | 3.71e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71896.t1 | AT1G12420 | 68.578 | 436 | 133 | 2 | 8 | 441 | 8 | 441 | 0.0 | 604 |
| MS.gene71896.t1 | AT4G22780 | 62.306 | 451 | 154 | 7 | 1 | 439 | 1 | 447 | 0.0 | 554 |
| MS.gene71896.t1 | AT4G22780 | 62.306 | 451 | 154 | 7 | 1 | 439 | 1 | 447 | 0.0 | 554 |
| MS.gene71896.t1 | AT1G12420 | 66.846 | 371 | 119 | 2 | 73 | 441 | 1 | 369 | 7.25e-177 | 499 |
| MS.gene71896.t1 | AT1G69040 | 50.559 | 447 | 204 | 5 | 8 | 441 | 13 | 455 | 7.17e-154 | 444 |
| MS.gene71896.t1 | AT1G69040 | 50.559 | 447 | 204 | 5 | 8 | 441 | 9 | 451 | 9.37e-154 | 444 |
| MS.gene71896.t1 | AT2G03730 | 49.558 | 452 | 200 | 7 | 8 | 439 | 13 | 456 | 8.61e-143 | 416 |
| MS.gene71896.t1 | AT2G03730 | 49.558 | 452 | 200 | 7 | 8 | 439 | 13 | 456 | 8.61e-143 | 416 |
| MS.gene71896.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 18 | 409 | 1.59e-137 | 402 |
| MS.gene71896.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 18 | 409 | 1.59e-137 | 402 |
| MS.gene71896.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 4 | 395 | 1.72e-137 | 401 |
| MS.gene71896.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 18 | 409 | 1.87e-137 | 402 |
| MS.gene71896.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 4 | 395 | 2.24e-137 | 401 |
| MS.gene71896.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 4 | 395 | 2.24e-137 | 401 |
| MS.gene71896.t1 | AT1G76990 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.15e-133 | 392 |
| MS.gene71896.t1 | AT1G76990 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.15e-133 | 392 |
| MS.gene71896.t1 | AT1G76990 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.15e-133 | 392 |
| MS.gene71896.t1 | AT1G76990 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.15e-133 | 392 |
| MS.gene71896.t1 | AT1G76990 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.15e-133 | 392 |
| MS.gene71896.t1 | AT5G25320 | 40.632 | 443 | 214 | 6 | 3 | 396 | 6 | 448 | 3.22e-113 | 342 |
| MS.gene71896.t1 | AT3G01990 | 50.453 | 331 | 148 | 3 | 8 | 326 | 4 | 330 | 1.99e-108 | 324 |
| MS.gene71896.t1 | AT3G01990 | 50.453 | 331 | 148 | 3 | 8 | 326 | 18 | 344 | 2.05e-108 | 324 |
| MS.gene71896.t1 | AT5G25320 | 41.320 | 409 | 193 | 5 | 35 | 396 | 1 | 409 | 2.91e-108 | 328 |
| MS.gene71896.t1 | AT3G01990 | 50.920 | 326 | 144 | 3 | 8 | 321 | 18 | 339 | 3.44e-108 | 323 |
| MS.gene71896.t1 | AT5G65890 | 40.385 | 416 | 211 | 6 | 9 | 389 | 13 | 426 | 9.27e-101 | 309 |
| MS.gene71896.t1 | AT5G65890 | 40.385 | 416 | 211 | 6 | 9 | 389 | 13 | 426 | 9.27e-101 | 309 |
| MS.gene71896.t1 | AT3G01990 | 48.621 | 290 | 133 | 3 | 8 | 285 | 18 | 303 | 3.00e-87 | 269 |
| MS.gene71896.t1 | AT5G65890 | 39.467 | 375 | 190 | 6 | 50 | 389 | 2 | 374 | 3.15e-87 | 273 |
| MS.gene71896.t1 | AT5G65890 | 39.467 | 375 | 190 | 6 | 50 | 389 | 2 | 374 | 3.15e-87 | 273 |
| MS.gene71896.t1 | AT3G01990 | 48.621 | 290 | 133 | 3 | 8 | 285 | 4 | 289 | 3.97e-87 | 268 |
| MS.gene71896.t1 | AT5G25320 | 39.402 | 368 | 174 | 6 | 3 | 321 | 6 | 373 | 4.82e-87 | 270 |
| MS.gene71896.t1 | AT5G65890 | 37.500 | 296 | 163 | 4 | 114 | 389 | 19 | 312 | 1.02e-62 | 207 |
| MS.gene71896.t1 | AT2G39570 | 24.126 | 286 | 197 | 10 | 28 | 298 | 16 | 296 | 2.57e-11 | 65.5 |
Find 92 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGAATTCCATGCTTTC+TGG | 0.070129 | 8.3:+19461212 | None:intergenic |
| CATATGCTTTCTTAATAAAA+AGG | 0.188552 | 8.3:+19461160 | None:intergenic |
| TCAGAACTAAACTTGAAAAT+TGG | 0.205980 | 8.3:+19460496 | None:intergenic |
| GAGAAGGAATCTGTACAATT+TGG | 0.211853 | 8.3:-19459680 | MS.gene71896:CDS |
| ATTTGGTGGAGCCTTCTTTC+AGG | 0.258400 | 8.3:+19460550 | None:intergenic |
| TTCTGAGGTGTTTGCTGTAT+TGG | 0.260105 | 8.3:-19460782 | MS.gene71896:CDS |
| CAGAAAGCATGGAATTCTTT+TGG | 0.281447 | 8.3:-19461211 | MS.gene71896:CDS |
| TACCTTGACTATAGTTGAAT+TGG | 0.284936 | 8.3:+19461337 | None:intergenic |
| TTTCATGTTACCGATCAAAA+TGG | 0.291087 | 8.3:-19461024 | MS.gene71896:CDS |
| CGCTCCGGTTCTGAACTAAT+TGG | 0.301964 | 8.3:+19460176 | None:intergenic |
| GCTCCGGTTCTGAACTAATT+GGG | 0.318294 | 8.3:+19460177 | None:intergenic |
| TTTCTTGAATGCAGGGTGTT+AGG | 0.338412 | 8.3:-19460011 | MS.gene71896:intron |
| AGAAGGAATCTGTACAATTT+GGG | 0.351653 | 8.3:-19459679 | MS.gene71896:CDS |
| CGGTAGTGACTGTACAGAAT+TGG | 0.353447 | 8.3:-19460468 | MS.gene71896:CDS |
| TACAAGGAGATAGTGATATT+AGG | 0.356042 | 8.3:-19460609 | MS.gene71896:CDS |
| TATGTTAAAGACAGCATCTC+TGG | 0.364796 | 8.3:-19460691 | MS.gene71896:CDS |
| GCTGTCTTTAACATAAATTA+AGG | 0.381361 | 8.3:+19460699 | None:intergenic |
| AGGATTCTCAGAAAATTAAT+CGG | 0.384316 | 8.3:-19460657 | MS.gene71896:CDS |
| CACGGTCTGCAAACATCATT+TGG | 0.388010 | 8.3:+19460533 | None:intergenic |
| ATCTGATGGAAGATGGTTCA+TGG | 0.410749 | 8.3:-19461133 | MS.gene71896:CDS |
| GGGGCAGTGTTATTGTCTCT+TGG | 0.420031 | 8.3:-19459712 | MS.gene71896:CDS |
| GTTAAGCAATTTAAAAGTAA+AGG | 0.442529 | 8.3:-19459794 | MS.gene71896:CDS |
| TGTACAGAATTGGGCAGAAA+GGG | 0.454717 | 8.3:-19460458 | MS.gene71896:CDS |
| TCTCACTGCCTTGGAATTGA+AGG | 0.460594 | 8.3:-19460827 | MS.gene71896:CDS |
| AAAGCATATGTTTCATCTGA+TGG | 0.461288 | 8.3:-19461147 | MS.gene71896:CDS |
| GGTAGTGACTGTACAGAATT+GGG | 0.466583 | 8.3:-19460467 | MS.gene71896:CDS |
| CATAACTACCACCGGAGACT+TGG | 0.467944 | 8.3:-19459899 | MS.gene71896:CDS |
| CATAAATTAAGGAGGCTGTT+CGG | 0.469802 | 8.3:+19460710 | None:intergenic |
| TTACATTCAACCCGTTCTCT+CGG | 0.476911 | 8.3:+19459932 | None:intergenic |
| TATAGTTGAATTGGAACAAA+CGG | 0.479069 | 8.3:+19461346 | None:intergenic |
| TAGAAATGGTCTCACTGCCT+TGG | 0.483190 | 8.3:-19460836 | MS.gene71896:CDS |
| AACCCCAATTAGTTCAGAAC+CGG | 0.487755 | 8.3:-19460180 | MS.gene71896:CDS |
| GATCAATCAGTTGGAGTTGG+AGG | 0.489723 | 8.3:-19459733 | MS.gene71896:CDS |
| TTCTATGCAACAGATGCCAT+TGG | 0.489734 | 8.3:-19459865 | MS.gene71896:CDS |
| ATGTGGTGGAGGCTAAAGTA+TGG | 0.495423 | 8.3:-19460744 | MS.gene71896:CDS |
| AACATTTGCAGCCAAGTCTC+CGG | 0.500842 | 8.3:+19459888 | None:intergenic |
| CTGTACAGAATTGGGCAGAA+AGG | 0.501383 | 8.3:-19460459 | MS.gene71896:CDS |
| TTGGTCAGCTGGGTATCCAA+TGG | 0.501529 | 8.3:+19459849 | None:intergenic |
| ATGTTTCATCTGATGGAAGA+TGG | 0.504319 | 8.3:-19461140 | MS.gene71896:CDS |
| TGAGAACATTCCGAGAGAAC+GGG | 0.510017 | 8.3:-19459942 | MS.gene71896:CDS |
| TTCCAATTCAACTATAGTCA+AGG | 0.517688 | 8.3:-19461339 | MS.gene71896:intron |
| TGAATCACACGATGGCGCTC+CGG | 0.519655 | 8.3:+19460161 | None:intergenic |
| ATGAGAACATTCCGAGAGAA+CGG | 0.522763 | 8.3:-19459943 | MS.gene71896:CDS |
| GAAGATCAATCAGTTGGAGT+TGG | 0.523868 | 8.3:-19459736 | MS.gene71896:CDS |
| TGTACAGATTCCTTCTCACT+AGG | 0.528667 | 8.3:+19459686 | None:intergenic |
| TTTGATAGTGCCAGAAAGCA+TGG | 0.529161 | 8.3:-19461222 | MS.gene71896:CDS |
| TCGCGTTGGTCTTCTTTCTG+AGG | 0.530642 | 8.3:-19460797 | MS.gene71896:CDS |
| CTCCGGTTCTGAACTAATTG+GGG | 0.530984 | 8.3:+19460178 | None:intergenic |
| TGTTGTTAATGTTCAGTGCA+AGG | 0.531806 | 8.3:-19460428 | MS.gene71896:CDS |
| GTCTCCGGTGGTAGTTATGT+CGG | 0.542647 | 8.3:+19459903 | None:intergenic |
| GAGAGGGAAGATCAATCAGT+TGG | 0.543799 | 8.3:-19459742 | MS.gene71896:CDS |
| CTGTTATACATCCTGAAAGA+AGG | 0.544238 | 8.3:-19460561 | MS.gene71896:CDS |
| GATGGAATGGTCTTCATGTA+CGG | 0.550387 | 8.3:-19461880 | MS.gene71896:CDS |
| ATCAATCAGTTGGAGTTGGA+GGG | 0.550430 | 8.3:-19459732 | MS.gene71896:CDS |
| ATCTGTGCCCTTCAATTCCA+AGG | 0.552997 | 8.3:+19460819 | None:intergenic |
| AAGGGTTGACCAAGCATACA+TGG | 0.554392 | 8.3:-19460326 | MS.gene71896:intron |
| CATCTCTGGGACATCTATTG+AGG | 0.555516 | 8.3:-19460677 | MS.gene71896:CDS |
| CAAGTTTAGTTCTGAAACGC+CGG | 0.562418 | 8.3:-19460488 | MS.gene71896:CDS |
| ATGTTAAAGACAGCATCTCT+GGG | 0.565140 | 8.3:-19460690 | MS.gene71896:CDS |
| CACCACATCACATTGCAGCT+CGG | 0.565793 | 8.3:+19460759 | None:intergenic |
| GCTACTAAGATAAGATGGAA+TGG | 0.566013 | 8.3:-19461893 | None:intergenic |
| AAGTAACTACCATGTATGCT+TGG | 0.571806 | 8.3:+19460317 | None:intergenic |
| CAATTCTGTACAGTCACTAC+CGG | 0.573952 | 8.3:+19460469 | None:intergenic |
| ATGTATAACAGCATCAGAGA+TGG | 0.579130 | 8.3:+19460573 | None:intergenic |
| AAGTCATCAAAAGGTAGAGA+GGG | 0.580764 | 8.3:-19459758 | MS.gene71896:CDS |
| CAAGTCATCAAAAGGTAGAG+AGG | 0.580801 | 8.3:-19459759 | MS.gene71896:CDS |
| TCAATCAGTTGGAGTTGGAG+GGG | 0.591152 | 8.3:-19459731 | MS.gene71896:CDS |
| CTCTTGGAAGCCTAGTGAGA+AGG | 0.591708 | 8.3:-19459696 | MS.gene71896:CDS |
| GCTGCAATGTGATGTGGTGG+AGG | 0.598200 | 8.3:-19460755 | MS.gene71896:CDS |
| CTCACTGCCTTGGAATTGAA+GGG | 0.602145 | 8.3:-19460826 | MS.gene71896:CDS |
| GTCTTTAACATAAATTAAGG+AGG | 0.602985 | 8.3:+19460702 | None:intergenic |
| CCCTTGTGTTGATAGTTGCA+TGG | 0.605571 | 8.3:+19460344 | None:intergenic |
| TCACTTAGTAGCATTTACAA+TGG | 0.611593 | 8.3:-19460871 | MS.gene71896:CDS |
| GGTCTGCAAACATCATTTGG+TGG | 0.620069 | 8.3:+19460536 | None:intergenic |
| TTGGATTCATCTGATAATCA+CGG | 0.620667 | 8.3:+19460515 | None:intergenic |
| TTGAAGGGCACAGATCGCGT+TGG | 0.633204 | 8.3:-19460811 | MS.gene71896:CDS |
| TGTGTGCAATTTAACAGACA+TGG | 0.633650 | 8.3:-19460380 | MS.gene71896:CDS |
| CGAGCTGCAATGTGATGTGG+TGG | 0.634692 | 8.3:-19460758 | MS.gene71896:CDS |
| CTATGCACTGAAGACAGACA+AGG | 0.636939 | 8.3:-19459982 | MS.gene71896:CDS |
| GGCCGAGCTGCAATGTGATG+TGG | 0.638970 | 8.3:-19460761 | MS.gene71896:CDS |
| CGTGCCGACATAACTACCAC+CGG | 0.642054 | 8.3:-19459907 | MS.gene71896:CDS |
| TCCATGCAACTATCAACACA+AGG | 0.643713 | 8.3:-19460345 | MS.gene71896:CDS |
| CAGACAAGGGCTTCTCGCCG+AGG | 0.655196 | 8.3:-19459968 | MS.gene71896:CDS |
| GTACAGAATTGGGCAGAAAG+GGG | 0.660005 | 8.3:-19460457 | MS.gene71896:CDS |
| GCAAGCATTGAATCACACGA+TGG | 0.664874 | 8.3:+19460153 | None:intergenic |
| GATGGAAGATGGTTCATGGA+TGG | 0.664920 | 8.3:-19461129 | MS.gene71896:intron |
| TCGGAATGTTCTCATCACCT+CGG | 0.665865 | 8.3:+19459951 | None:intergenic |
| ATTTGCAGCCAAGTCTCCGG+TGG | 0.688653 | 8.3:+19459891 | None:intergenic |
| GCTAAAGTATGGACTCACAA+TGG | 0.689830 | 8.3:-19460733 | MS.gene71896:CDS |
| TATGCACTGAAGACAGACAA+GGG | 0.701710 | 8.3:-19459981 | MS.gene71896:CDS |
| AGTAGAGAGAAGATCATGCG+AGG | 0.712972 | 8.3:-19460123 | MS.gene71896:intron |
| CCATGCAACTATCAACACAA+GGG | 0.731496 | 8.3:-19460344 | MS.gene71896:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGTTAAAAATAATTTTGT+CGG | + | chr8.3:19460112-19460131 | None:intergenic | 10.0% |
| !!! | GTAAAAATTATTTTTATTTC+AGG | - | chr8.3:19461308-19461327 | MS.gene71896:intron | 10.0% |
| !!! | TAATTTTTACATCATTAATT+AGG | + | chr8.3:19461298-19461317 | None:intergenic | 10.0% |
| !! | AAACAAAGAATTTAGATTTA+TGG | + | chr8.3:19460633-19460652 | None:intergenic | 15.0% |
| !! | AAATCAATTATAGAAAAAGT+TGG | + | chr8.3:19460086-19460105 | None:intergenic | 15.0% |
| !! | ACATTAAACAACAAAAAATT+AGG | + | chr8.3:19460486-19460505 | None:intergenic | 15.0% |
| !! | AGAAAATTCCTTAATTAATT+TGG | - | chr8.3:19460231-19460250 | MS.gene71896:intron | 15.0% |
| !! | ATCTTAATATATTCATATCA+CGG | + | chr8.3:19461491-19461510 | None:intergenic | 15.0% |
| !! | CATTAAACAACAAAAAATTA+GGG | + | chr8.3:19460485-19460504 | None:intergenic | 15.0% |
| !! | GAAAATTCCTTAATTAATTT+GGG | - | chr8.3:19460232-19460251 | MS.gene71896:intron | 15.0% |
| !!! | ATTTGCATTTAACTTTTTTA+TGG | - | chr8.3:19459795-19459814 | MS.gene71896:CDS | 15.0% |
| !!! | TAATGCAATGTTTTTTTTTT+TGG | - | chr8.3:19461254-19461273 | MS.gene71896:intron | 15.0% |
| !! | AAACCAGATATTAATTTCAA+GGG | - | chr8.3:19459890-19459909 | MS.gene71896:CDS | 20.0% |
| !! | ATTCAGAAAAATTTGATTGA+AGG | + | chr8.3:19459842-19459861 | None:intergenic | 20.0% |
| !! | CATATGCTTTCTTAATAAAA+AGG | + | chr8.3:19460379-19460398 | None:intergenic | 20.0% |
| !! | GTTAAGCAATTTAAAAGTAA+AGG | - | chr8.3:19461742-19461761 | MS.gene71896:intron | 20.0% |
| !!! | AATTTTTCAATCTTGTTCAT+TGG | - | chr8.3:19460436-19460455 | MS.gene71896:CDS | 20.0% |
| !!! | CGTTTTAAAATATATTGAAC+AGG | - | chr8.3:19460556-19460575 | MS.gene71896:CDS | 20.0% |
| ! | AAACATTGAAAAGAGAAAGA+AGG | + | chr8.3:19459733-19459752 | None:intergenic | 25.0% |
| ! | AAACCCTTGAAATTAATATC+TGG | + | chr8.3:19459896-19459915 | None:intergenic | 25.0% |
| ! | AAGTTAAATGCAAATGAATC+AGG | + | chr8.3:19459790-19459809 | None:intergenic | 25.0% |
| ! | AATCAGTTCGTCAAAAAATT+GGG | - | chr8.3:19461720-19461739 | MS.gene71896:intron | 25.0% |
| ! | AGGATTCTCAGAAAATTAAT+CGG | - | chr8.3:19460879-19460898 | MS.gene71896:intron | 25.0% |
| ! | ATATATTGAACAGGTACTAA+TGG | - | chr8.3:19460565-19460584 | MS.gene71896:CDS | 25.0% |
| ! | ATTGTTAATTTCTTGAATGC+AGG | - | chr8.3:19461517-19461536 | MS.gene71896:intron | 25.0% |
| ! | GAAACCAGATATTAATTTCA+AGG | - | chr8.3:19459889-19459908 | MS.gene71896:CDS | 25.0% |
| ! | GCTGTCTTTAACATAAATTA+AGG | + | chr8.3:19460840-19460859 | None:intergenic | 25.0% |
| ! | GGAAAAACAAATCATAGAAA+TGG | - | chr8.3:19460686-19460705 | MS.gene71896:CDS | 25.0% |
| ! | GTCTTTAACATAAATTAAGG+AGG | + | chr8.3:19460837-19460856 | None:intergenic | 25.0% |
| ! | GTGTAAACCCAAATTAATTA+AGG | + | chr8.3:19460242-19460261 | None:intergenic | 25.0% |
| ! | TATAGTTGAATTGGAACAAA+CGG | + | chr8.3:19460193-19460212 | None:intergenic | 25.0% |
| ! | TCAATTATAGAAAAAGTTGG+TGG | + | chr8.3:19460083-19460102 | None:intergenic | 25.0% |
| ! | TCAGAACTAAACTTGAAAAT+TGG | + | chr8.3:19461043-19461062 | None:intergenic | 25.0% |
| ! | TTGTTAATTTCTTGAATGCA+GGG | - | chr8.3:19461518-19461537 | MS.gene71896:intron | 25.0% |
| ! | TTTCGTGTTTGAAAAAAACA+GGG | - | chr8.3:19460152-19460171 | MS.gene71896:CDS | 25.0% |
| !! | AATATCTGGTTTCAAAACTA+AGG | + | chr8.3:19459882-19459901 | None:intergenic | 25.0% |
| !! | ATATCTGGTTTCAAAACTAA+GGG | + | chr8.3:19459881-19459900 | None:intergenic | 25.0% |
| !! | TTTTACATTAGACATAAGGA+TGG | - | chr8.3:19461333-19461352 | MS.gene71896:intron | 25.0% |
| !! | TTTTCGTGTTTGAAAAAAAC+AGG | - | chr8.3:19460151-19460170 | MS.gene71896:CDS | 25.0% |
| !!! | CGTTTAAGATATGTTTTACA+AGG | - | chr8.3:19460911-19460930 | MS.gene71896:intron | 25.0% |
| !!! | TAACTTGTTTCCATTTTGAT+CGG | + | chr8.3:19460525-19460544 | None:intergenic | 25.0% |
| AAAGCATATGTTTCATCTGA+TGG | - | chr8.3:19460389-19460408 | MS.gene71896:CDS | 30.0% | |
| AAGCAAAAAGAGGTTTGAAT+CGG | + | chr8.3:19459963-19459982 | None:intergenic | 30.0% | |
| AGAAGGAATCTGTACAATTT+GGG | - | chr8.3:19461857-19461876 | MS.gene71896:CDS | 30.0% | |
| GAATCAGTTCGTCAAAAAAT+TGG | - | chr8.3:19461719-19461738 | MS.gene71896:intron | 30.0% | |
| TACAAGGAGATAGTGATATT+AGG | - | chr8.3:19460927-19460946 | MS.gene71896:intron | 30.0% | |
| TACCTTGACTATAGTTGAAT+TGG | + | chr8.3:19460202-19460221 | None:intergenic | 30.0% | |
| TCACTTAGTAGCATTTACAA+TGG | - | chr8.3:19460665-19460684 | MS.gene71896:CDS | 30.0% | |
| TGATTGAAGGATGAAGAAAA+TGG | + | chr8.3:19459829-19459848 | None:intergenic | 30.0% | |
| TTCCAATTCAACTATAGTCA+AGG | - | chr8.3:19460197-19460216 | MS.gene71896:CDS | 30.0% | |
| TTCTCTTGAGATTTCTTCTA+AGG | - | chr8.3:19459935-19459954 | MS.gene71896:CDS | 30.0% | |
| TTGGATTCATCTGATAATCA+CGG | + | chr8.3:19461024-19461043 | None:intergenic | 30.0% | |
| TTTCATGTTACCGATCAAAA+TGG | - | chr8.3:19460512-19460531 | MS.gene71896:CDS | 30.0% | |
| ! | GGAGTTTTACATTAGACATA+AGG | - | chr8.3:19461329-19461348 | MS.gene71896:intron | 30.0% |
| !! | AGAAAAAGTTGGTGGAAATT+AGG | + | chr8.3:19460075-19460094 | None:intergenic | 30.0% |
| !!! | GAACTGATTCGATGATTTTT+TGG | + | chr8.3:19461709-19461728 | None:intergenic | 30.0% |
| AAGTAACTACCATGTATGCT+TGG | + | chr8.3:19461222-19461241 | None:intergenic | 35.0% | |
| AAGTCATCAAAAGGTAGAGA+GGG | - | chr8.3:19461778-19461797 | MS.gene71896:intron | 35.0% | |
| ATGTATAACAGCATCAGAGA+TGG | + | chr8.3:19460966-19460985 | None:intergenic | 35.0% | |
| ATGTTAAAGACAGCATCTCT+GGG | - | chr8.3:19460846-19460865 | MS.gene71896:CDS | 35.0% | |
| ATGTTTCATCTGATGGAAGA+TGG | - | chr8.3:19460396-19460415 | MS.gene71896:CDS | 35.0% | |
| CAAAAGAATTCCATGCTTTC+TGG | + | chr8.3:19460327-19460346 | None:intergenic | 35.0% | |
| CATAAATTAAGGAGGCTGTT+CGG | + | chr8.3:19460829-19460848 | None:intergenic | 35.0% | |
| CTGTTATACATCCTGAAAGA+AGG | - | chr8.3:19460975-19460994 | MS.gene71896:intron | 35.0% | |
| GAGAAGGAATCTGTACAATT+TGG | - | chr8.3:19461856-19461875 | MS.gene71896:CDS | 35.0% | |
| TATGTTAAAGACAGCATCTC+TGG | - | chr8.3:19460845-19460864 | MS.gene71896:CDS | 35.0% | |
| TGTGTGCAATTTAACAGACA+TGG | - | chr8.3:19461156-19461175 | MS.gene71896:CDS | 35.0% | |
| TGTTGTTAATGTTCAGTGCA+AGG | - | chr8.3:19461108-19461127 | MS.gene71896:intron | 35.0% | |
| !! | ACCTTTTGATGACTTGCAAA+AGG | + | chr8.3:19461773-19461792 | None:intergenic | 35.0% |
| !! | CAGAAAGCATGGAATTCTTT+TGG | - | chr8.3:19460325-19460344 | MS.gene71896:intron | 35.0% |
| AACCCCAATTAGTTCAGAAC+CGG | - | chr8.3:19461356-19461375 | MS.gene71896:CDS | 40.0% | |
| ATCAATCAGTTGGAGTTGGA+GGG | - | chr8.3:19461804-19461823 | MS.gene71896:intron | 40.0% | |
| ATCTGATGGAAGATGGTTCA+TGG | - | chr8.3:19460403-19460422 | MS.gene71896:CDS | 40.0% | |
| ATGAGAACATTCCGAGAGAA+CGG | - | chr8.3:19461593-19461612 | MS.gene71896:intron | 40.0% | |
| CAAGTCATCAAAAGGTAGAG+AGG | - | chr8.3:19461777-19461796 | MS.gene71896:intron | 40.0% | |
| CAATTCTGTACAGTCACTAC+CGG | + | chr8.3:19461070-19461089 | None:intergenic | 40.0% | |
| CCATGCAACTATCAACACAA+GGG | - | chr8.3:19461192-19461211 | MS.gene71896:CDS | 40.0% | |
| GAAGATCAATCAGTTGGAGT+TGG | - | chr8.3:19461800-19461819 | MS.gene71896:intron | 40.0% | |
| GCTAAAGTATGGACTCACAA+TGG | - | chr8.3:19460803-19460822 | MS.gene71896:CDS | 40.0% | |
| GGTAGTGACTGTACAGAATT+GGG | - | chr8.3:19461069-19461088 | MS.gene71896:intron | 40.0% | |
| GGTTTCAAAACTAAGGGATC+TGG | + | chr8.3:19459875-19459894 | None:intergenic | 40.0% | |
| TATGCACTGAAGACAGACAA+GGG | - | chr8.3:19461555-19461574 | MS.gene71896:intron | 40.0% | |
| TCCATGCAACTATCAACACA+AGG | - | chr8.3:19461191-19461210 | MS.gene71896:CDS | 40.0% | |
| TGTACAGAATTGGGCAGAAA+GGG | - | chr8.3:19461078-19461097 | MS.gene71896:intron | 40.0% | |
| TGTACAGATTCCTTCTCACT+AGG | + | chr8.3:19461853-19461872 | None:intergenic | 40.0% | |
| TTACATTCAACCCGTTCTCT+CGG | + | chr8.3:19461607-19461626 | None:intergenic | 40.0% | |
| TTCTATGCAACAGATGCCAT+TGG | - | chr8.3:19461671-19461690 | MS.gene71896:intron | 40.0% | |
| ! | GCCTTTTGCAAGTCATCAAA+AGG | - | chr8.3:19461769-19461788 | MS.gene71896:intron | 40.0% |
| ! | TTTCTTGAATGCAGGGTGTT+AGG | - | chr8.3:19461525-19461544 | MS.gene71896:intron | 40.0% |
| !! | CAAGTTTAGTTCTGAAACGC+CGG | - | chr8.3:19461048-19461067 | MS.gene71896:intron | 40.0% |
| !! | TTCTGAGGTGTTTGCTGTAT+TGG | - | chr8.3:19460754-19460773 | MS.gene71896:CDS | 40.0% |
| !! | TTTGATAGTGCCAGAAAGCA+TGG | - | chr8.3:19460314-19460333 | MS.gene71896:intron | 40.0% |
| !!! | CGATGATTTTTTGGTCAGCT+GGG | + | chr8.3:19461700-19461719 | None:intergenic | 40.0% |
| !!! | TCGATGATTTTTTGGTCAGC+TGG | + | chr8.3:19461701-19461720 | None:intergenic | 40.0% |
| AACATTTGCAGCCAAGTCTC+CGG | + | chr8.3:19461651-19461670 | None:intergenic | 45.0% | |
| AAGAAGGAAGACACGAACCT+AGG | + | chr8.3:19459717-19459736 | None:intergenic | 45.0% | |
| AAGGGTTGACCAAGCATACA+TGG | - | chr8.3:19461210-19461229 | MS.gene71896:CDS | 45.0% | |
| AGAGAAGATCATGCGAGGTA+TGG | - | chr8.3:19461418-19461437 | MS.gene71896:intron | 45.0% | |
| AGTAGAGAGAAGATCATGCG+AGG | - | chr8.3:19461413-19461432 | MS.gene71896:intron | 45.0% | |
| ATCTGTGCCCTTCAATTCCA+AGG | + | chr8.3:19460720-19460739 | None:intergenic | 45.0% | |
| CACGGTCTGCAAACATCATT+TGG | + | chr8.3:19461006-19461025 | None:intergenic | 45.0% | |
| CGGTAGTGACTGTACAGAAT+TGG | - | chr8.3:19461068-19461087 | MS.gene71896:intron | 45.0% | |
| CTATGCACTGAAGACAGACA+AGG | - | chr8.3:19461554-19461573 | MS.gene71896:intron | 45.0% | |
| CTCACTGCCTTGGAATTGAA+GGG | - | chr8.3:19460710-19460729 | MS.gene71896:CDS | 45.0% | |
| CTGTACAGAATTGGGCAGAA+AGG | - | chr8.3:19461077-19461096 | MS.gene71896:intron | 45.0% | |
| GAGAGGGAAGATCAATCAGT+TGG | - | chr8.3:19461794-19461813 | MS.gene71896:intron | 45.0% | |
| GATCAATCAGTTGGAGTTGG+AGG | - | chr8.3:19461803-19461822 | MS.gene71896:intron | 45.0% | |
| GATGGAAGATGGTTCATGGA+TGG | - | chr8.3:19460407-19460426 | MS.gene71896:CDS | 45.0% | |
| GGTCTGCAAACATCATTTGG+TGG | + | chr8.3:19461003-19461022 | None:intergenic | 45.0% | |
| GTACAGAATTGGGCAGAAAG+GGG | - | chr8.3:19461079-19461098 | MS.gene71896:intron | 45.0% | |
| TAGAAATGGTCTCACTGCCT+TGG | - | chr8.3:19460700-19460719 | MS.gene71896:CDS | 45.0% | |
| TCAATCAGTTGGAGTTGGAG+GGG | - | chr8.3:19461805-19461824 | MS.gene71896:intron | 45.0% | |
| TCGGAATGTTCTCATCACCT+CGG | + | chr8.3:19461588-19461607 | None:intergenic | 45.0% | |
| TCTCACTGCCTTGGAATTGA+AGG | - | chr8.3:19460709-19460728 | MS.gene71896:CDS | 45.0% | |
| TGAGAACATTCCGAGAGAAC+GGG | - | chr8.3:19461594-19461613 | MS.gene71896:intron | 45.0% | |
| TGAGGTACGCAAGCAAAAAG+AGG | + | chr8.3:19459973-19459992 | None:intergenic | 45.0% | |
| ! | ATGTGGTGGAGGCTAAAGTA+TGG | - | chr8.3:19460792-19460811 | MS.gene71896:CDS | 45.0% |
| ! | ATTTGGTGGAGCCTTCTTTC+AGG | + | chr8.3:19460989-19461008 | None:intergenic | 45.0% |
| ! | TTTTTCGCATGAGCACTCCT+AGG | - | chr8.3:19459697-19459716 | MS.gene71896:CDS | 45.0% |
| !! | CATCTCTGGGACATCTATTG+AGG | - | chr8.3:19460859-19460878 | MS.gene71896:CDS | 45.0% |
| !! | CCCTTGTGTTGATAGTTGCA+TGG | + | chr8.3:19461195-19461214 | None:intergenic | 45.0% |
| !! | CTCCGGTTCTGAACTAATTG+GGG | + | chr8.3:19461361-19461380 | None:intergenic | 45.0% |
| !! | GCAAGCATTGAATCACACGA+TGG | + | chr8.3:19461386-19461405 | None:intergenic | 45.0% |
| !! | GCTCCGGTTCTGAACTAATT+GGG | + | chr8.3:19461362-19461381 | None:intergenic | 45.0% |
| !! | TTTAAATTAATTAAAATTTG+AGG | + | chr8.3:19459991-19460010 | None:intergenic | 5.0% |
| CACCACATCACATTGCAGCT+CGG | + | chr8.3:19460780-19460799 | None:intergenic | 50.0% | |
| CATAACTACCACCGGAGACT+TGG | - | chr8.3:19461637-19461656 | MS.gene71896:intron | 50.0% | |
| CTCTTGGAAGCCTAGTGAGA+AGG | - | chr8.3:19461840-19461859 | MS.gene71896:CDS | 50.0% | |
| GTCTCCGGTGGTAGTTATGT+CGG | + | chr8.3:19461636-19461655 | None:intergenic | 50.0% | |
| TTGGTCAGCTGGGTATCCAA+TGG | + | chr8.3:19461690-19461709 | None:intergenic | 50.0% | |
| ! | GGGGCAGTGTTATTGTCTCT+TGG | - | chr8.3:19461824-19461843 | MS.gene71896:intron | 50.0% |
| !! | CGCTCCGGTTCTGAACTAAT+TGG | + | chr8.3:19461363-19461382 | None:intergenic | 50.0% |
| !! | TCGCGTTGGTCTTCTTTCTG+AGG | - | chr8.3:19460739-19460758 | MS.gene71896:CDS | 50.0% |
| ATTTGCAGCCAAGTCTCCGG+TGG | + | chr8.3:19461648-19461667 | None:intergenic | 55.0% | |
| CGAGCTGCAATGTGATGTGG+TGG | - | chr8.3:19460778-19460797 | MS.gene71896:CDS | 55.0% | |
| GCTGCAATGTGATGTGGTGG+AGG | - | chr8.3:19460781-19460800 | MS.gene71896:CDS | 55.0% | |
| TGAATCACACGATGGCGCTC+CGG | + | chr8.3:19461378-19461397 | None:intergenic | 55.0% | |
| ! | CGTGCCGACATAACTACCAC+CGG | - | chr8.3:19461629-19461648 | MS.gene71896:intron | 55.0% |
| ! | TTGAAGGGCACAGATCGCGT+TGG | - | chr8.3:19460725-19460744 | MS.gene71896:CDS | 55.0% |
| GGCCGAGCTGCAATGTGATG+TGG | - | chr8.3:19460775-19460794 | MS.gene71896:CDS | 60.0% | |
| CAGACAAGGGCTTCTCGCCG+AGG | - | chr8.3:19461568-19461587 | MS.gene71896:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 19459657 | 19461901 | 19459657 | ID=MS.gene71896 |
| chr8.3 | mRNA | 19459657 | 19461901 | 19459657 | ID=MS.gene71896.t1;Parent=MS.gene71896 |
| chr8.3 | exon | 19461840 | 19461901 | 19461840 | ID=MS.gene71896.t1.exon1;Parent=MS.gene71896.t1 |
| chr8.3 | CDS | 19461840 | 19461901 | 19461840 | ID=cds.MS.gene71896.t1;Parent=MS.gene71896.t1 |
| chr8.3 | exon | 19461340 | 19461385 | 19461340 | ID=MS.gene71896.t1.exon2;Parent=MS.gene71896.t1 |
| chr8.3 | CDS | 19461340 | 19461385 | 19461340 | ID=cds.MS.gene71896.t1;Parent=MS.gene71896.t1 |
| chr8.3 | exon | 19461130 | 19461244 | 19461130 | ID=MS.gene71896.t1.exon3;Parent=MS.gene71896.t1 |
| chr8.3 | CDS | 19461130 | 19461244 | 19461130 | ID=cds.MS.gene71896.t1;Parent=MS.gene71896.t1 |
| chr8.3 | exon | 19460981 | 19461048 | 19460981 | ID=MS.gene71896.t1.exon4;Parent=MS.gene71896.t1 |
| chr8.3 | CDS | 19460981 | 19461048 | 19460981 | ID=cds.MS.gene71896.t1;Parent=MS.gene71896.t1 |
| chr8.3 | exon | 19460327 | 19460893 | 19460327 | ID=MS.gene71896.t1.exon5;Parent=MS.gene71896.t1 |
| chr8.3 | CDS | 19460327 | 19460893 | 19460327 | ID=cds.MS.gene71896.t1;Parent=MS.gene71896.t1 |
| chr8.3 | exon | 19460124 | 19460228 | 19460124 | ID=MS.gene71896.t1.exon6;Parent=MS.gene71896.t1 |
| chr8.3 | CDS | 19460124 | 19460228 | 19460124 | ID=cds.MS.gene71896.t1;Parent=MS.gene71896.t1 |
| chr8.3 | exon | 19459657 | 19460019 | 19459657 | ID=MS.gene71896.t1.exon7;Parent=MS.gene71896.t1 |
| chr8.3 | CDS | 19459657 | 19460019 | 19459657 | ID=cds.MS.gene71896.t1;Parent=MS.gene71896.t1 |
| Gene Sequence |
| Protein sequence |
