Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71989.t1 | XP_003608655.2 | 98 | 300 | 6 | 0 | 1 | 300 | 1 | 300 | 1.80E-158 | 568.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71989.t1 | F4JML5 | 69.6 | 273 | 83 | 0 | 27 | 299 | 28 | 300 | 8.8e-106 | 384.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71989.t1 | G7JHN1 | 98.0 | 300 | 6 | 0 | 1 | 300 | 1 | 300 | 1.3e-158 | 568.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene71989 | MS.gene022937 | PPI |
| MS.gene029856 | MS.gene71989 | PPI |
| MS.gene97486 | MS.gene71989 | PPI |
| MS.gene71989 | MS.gene97484 | PPI |
| MS.gene71989 | MS.gene071145 | PPI |
| MS.gene71989 | MS.gene071146 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71989.t1 | MTR_4g100350 | 98.000 | 300 | 6 | 0 | 1 | 300 | 1 | 300 | 0.0 | 601 |
| MS.gene71989.t1 | MTR_3g085700 | 29.412 | 255 | 171 | 3 | 52 | 298 | 17 | 270 | 8.31e-28 | 108 |
| MS.gene71989.t1 | MTR_4g120130 | 34.536 | 194 | 122 | 4 | 48 | 239 | 12 | 202 | 5.15e-25 | 105 |
| MS.gene71989.t1 | MTR_4g122220 | 28.049 | 246 | 171 | 3 | 53 | 296 | 15 | 256 | 1.09e-23 | 97.8 |
| MS.gene71989.t1 | MTR_8g064990 | 27.309 | 249 | 175 | 4 | 53 | 298 | 3 | 248 | 5.08e-22 | 93.2 |
| MS.gene71989.t1 | MTR_8g064990 | 25.170 | 294 | 212 | 5 | 10 | 298 | 32 | 322 | 4.15e-21 | 92.0 |
| MS.gene71989.t1 | MTR_2027s0010 | 28.509 | 228 | 150 | 4 | 57 | 276 | 13 | 235 | 7.20e-21 | 89.7 |
| MS.gene71989.t1 | MTR_0837s0020 | 44.762 | 105 | 55 | 1 | 102 | 206 | 206 | 307 | 2.23e-19 | 89.0 |
| MS.gene71989.t1 | MTR_6g087670 | 35.821 | 201 | 120 | 5 | 42 | 236 | 4 | 201 | 1.99e-17 | 82.8 |
| MS.gene71989.t1 | MTR_2g436300 | 33.816 | 207 | 131 | 5 | 48 | 251 | 10 | 213 | 4.87e-17 | 81.6 |
| MS.gene71989.t1 | MTR_1535s0020 | 33.913 | 115 | 74 | 2 | 50 | 163 | 14 | 127 | 1.19e-12 | 64.3 |
| MS.gene71989.t1 | MTR_8g010580 | 26.163 | 172 | 119 | 4 | 57 | 223 | 23 | 191 | 1.22e-12 | 67.8 |
| MS.gene71989.t1 | MTR_8g010580 | 26.163 | 172 | 119 | 4 | 57 | 223 | 23 | 191 | 1.32e-12 | 67.8 |
| MS.gene71989.t1 | MTR_8g010580 | 25.862 | 174 | 117 | 5 | 57 | 223 | 23 | 191 | 1.54e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71989.t1 | AT4G16800 | 69.597 | 273 | 83 | 0 | 27 | 299 | 28 | 300 | 3.53e-141 | 400 |
| MS.gene71989.t1 | AT5G43280 | 29.278 | 263 | 168 | 4 | 50 | 297 | 16 | 275 | 9.05e-29 | 111 |
| MS.gene71989.t1 | AT4G16210 | 30.667 | 225 | 140 | 6 | 53 | 271 | 18 | 232 | 8.07e-25 | 100 |
| MS.gene71989.t1 | AT5G43280 | 30.811 | 185 | 111 | 3 | 50 | 220 | 16 | 197 | 1.48e-23 | 96.3 |
| MS.gene71989.t1 | AT1G60550 | 26.690 | 281 | 199 | 5 | 22 | 298 | 54 | 331 | 1.26e-22 | 96.3 |
| MS.gene71989.t1 | AT3G06860 | 37.173 | 191 | 113 | 4 | 53 | 239 | 17 | 204 | 1.98e-17 | 83.2 |
| MS.gene71989.t1 | AT4G29010 | 33.505 | 194 | 123 | 4 | 51 | 241 | 13 | 203 | 2.50e-16 | 79.7 |
| MS.gene71989.t1 | AT4G31810 | 28.488 | 172 | 116 | 5 | 59 | 225 | 56 | 225 | 2.39e-14 | 73.2 |
| MS.gene71989.t1 | AT3G24360 | 22.846 | 267 | 193 | 6 | 33 | 291 | 38 | 299 | 7.09e-13 | 68.9 |
| MS.gene71989.t1 | AT2G30660 | 24.194 | 186 | 129 | 5 | 47 | 225 | 8 | 188 | 3.07e-12 | 67.0 |
| MS.gene71989.t1 | AT5G65940 | 24.878 | 205 | 141 | 7 | 47 | 244 | 12 | 210 | 7.47e-12 | 65.5 |
| MS.gene71989.t1 | AT5G65940 | 24.878 | 205 | 141 | 7 | 47 | 244 | 12 | 210 | 8.59e-12 | 65.5 |
| MS.gene71989.t1 | AT5G65940 | 24.878 | 205 | 141 | 7 | 47 | 244 | 12 | 210 | 8.59e-12 | 65.5 |
| MS.gene71989.t1 | AT5G65940 | 25.128 | 195 | 133 | 7 | 57 | 244 | 22 | 210 | 8.81e-12 | 65.5 |
| MS.gene71989.t1 | AT2G30650 | 25.532 | 188 | 124 | 7 | 47 | 225 | 8 | 188 | 9.10e-11 | 62.4 |
Find 74 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGTTCCACATTGACATTTC+TGG | 0.129778 | 8.1:-22745476 | MS.gene71989:CDS |
| TTTACTGGTCGAAAGATTAA+TGG | 0.241785 | 8.1:-22744416 | MS.gene71989:CDS |
| ATGGGTTTGGTGCTGATGAT+AGG | 0.313045 | 8.1:+22746372 | None:intergenic |
| CAAGCCTTCCAGTCGATCTT+TGG | 0.317010 | 8.1:+22743245 | None:intergenic |
| AGTCCAAGATAAGTGTTCTA+TGG | 0.332255 | 8.1:+22746353 | None:intergenic |
| TGTACCCACTATTGCTGTTA+TGG | 0.336211 | 8.1:-22745158 | MS.gene71989:CDS |
| TCTAACATCAGCTTTGGTTT+TGG | 0.336452 | 8.1:-22743298 | MS.gene71989:CDS |
| TTGATCCGCAGTTTAGTTCC+CGG | 0.347590 | 8.1:-22745990 | MS.gene71989:CDS |
| TTAGCCATCCTTACTGCTAC+AGG | 0.361179 | 8.1:+22743351 | None:intergenic |
| CGTAGGAGCAAATGCTTTGA+TGG | 0.365191 | 8.1:-22744957 | MS.gene71989:intron |
| GTCAATTACTGTGTTGCTGC+TGG | 0.380310 | 8.1:-22743981 | MS.gene71989:CDS |
| GACTGATCTAACATCAGCTT+TGG | 0.400861 | 8.1:-22743304 | MS.gene71989:CDS |
| TCTTGGTGGTGGACTTGAAA+TGG | 0.419511 | 8.1:-22745125 | MS.gene71989:CDS |
| GGAAGAAGATTGCTATGATC+AGG | 0.420947 | 8.1:-22743277 | MS.gene71989:CDS |
| AACCCATAGAACACTTATCT+TGG | 0.425465 | 8.1:-22746356 | MS.gene71989:CDS |
| TCCTTCCATAACAGCAATAG+TGG | 0.426484 | 8.1:+22745153 | None:intergenic |
| AGATAAGTGTTCTATGGGTT+TGG | 0.434008 | 8.1:+22746359 | None:intergenic |
| TTGTGCTGGGGCTGATCTAA+AGG | 0.436607 | 8.1:-22745961 | MS.gene71989:intron |
| TTGATGGGTTTGCCAGAGAC+AGG | 0.439262 | 8.1:-22744941 | MS.gene71989:CDS |
| AATCTCACTGGCTCAGATTC+CGG | 0.440580 | 8.1:-22746301 | MS.gene71989:intron |
| AATTTCAAGTGCCTTGGAAT+GGG | 0.444417 | 8.1:+22743953 | None:intergenic |
| TGGTGGACTTGAAATGGCTT+TGG | 0.450397 | 8.1:-22745119 | MS.gene71989:CDS |
| TGGCATTGAGGCGCTATCAA+TGG | 0.451098 | 8.1:-22744396 | MS.gene71989:CDS |
| CCGAGCAATTTCAAGTGCCT+TGG | 0.455064 | 8.1:+22743947 | None:intergenic |
| AGGGATTATTGAAGTTAGCT+TGG | 0.460766 | 8.1:-22746111 | MS.gene71989:CDS |
| CCAAGGCACTTGAAATTGCT+CGG | 0.465476 | 8.1:-22743947 | MS.gene71989:CDS |
| GGCATTGAGGCGCTATCAAT+GGG | 0.465523 | 8.1:-22744395 | MS.gene71989:intron |
| TGCTCGGGATATCAATCAAA+AGG | 0.472234 | 8.1:-22743931 | MS.gene71989:intron |
| CAATTTCAAGTGCCTTGGAA+TGG | 0.474872 | 8.1:+22743952 | None:intergenic |
| ACAGGACTTGCTATAATCCC+TGG | 0.491046 | 8.1:-22744923 | MS.gene71989:CDS |
| TGGGTTTGGTGCTGATGATA+GGG | 0.491563 | 8.1:+22746373 | None:intergenic |
| TGATCCGCAGTTTAGTTCCC+GGG | 0.494453 | 8.1:-22745989 | MS.gene71989:CDS |
| TTTCACTCGCCAGTGTACCT+TGG | 0.495193 | 8.1:+22743198 | None:intergenic |
| GTCCAAGATAAGTGTTCTAT+GGG | 0.506385 | 8.1:+22746354 | None:intergenic |
| AATAGGGCCCTGTAGCAGTA+AGG | 0.507132 | 8.1:-22743359 | MS.gene71989:intron |
| CAAGGCACTTGAAATTGCTC+GGG | 0.509246 | 8.1:-22743946 | MS.gene71989:CDS |
| TAGCCATCCTTACTGCTACA+GGG | 0.516527 | 8.1:+22743352 | None:intergenic |
| CAAAGATCGACTGGAAGGCT+TGG | 0.520217 | 8.1:-22743244 | MS.gene71989:CDS |
| GAAGGAGTAGCTCTTGGTGG+TGG | 0.527355 | 8.1:-22745136 | MS.gene71989:CDS |
| GTCAAGCTTCACAATCTCAC+TGG | 0.527894 | 8.1:-22746313 | MS.gene71989:CDS |
| ATTATAGCAAGTCCTGTCTC+TGG | 0.532014 | 8.1:+22744929 | None:intergenic |
| AAGAGCTATTAACGAGGGAG+TGG | 0.534208 | 8.1:-22743328 | MS.gene71989:CDS |
| GCATGTGATATTCGAATATG+TGG | 0.548943 | 8.1:-22745097 | MS.gene71989:intron |
| AACACAGCGACTACCTAGAT+TGG | 0.556542 | 8.1:-22744468 | MS.gene71989:CDS |
| CTTGTCATGCACAGGGCAGG+TGG | 0.558617 | 8.1:-22744491 | MS.gene71989:intron |
| GTTGAATACCAAAGATCGAC+TGG | 0.559419 | 8.1:-22743253 | MS.gene71989:CDS |
| GTAGGAGCAAATGCTTTGAT+GGG | 0.562937 | 8.1:-22744956 | MS.gene71989:intron |
| GTTATGGAAGGAGTAGCTCT+TGG | 0.563981 | 8.1:-22745142 | MS.gene71989:CDS |
| GGTAGGAAAATCAGTAGCAA+AGG | 0.575856 | 8.1:-22744447 | MS.gene71989:CDS |
| ATGGAAGGAGTAGCTCTTGG+TGG | 0.578725 | 8.1:-22745139 | MS.gene71989:CDS |
| ATCACAGGAACGCAGGACCA+TGG | 0.578834 | 8.1:-22745533 | MS.gene71989:intron |
| TGGCTGCATTTGCTGAAAAG+CGG | 0.579686 | 8.1:-22743224 | MS.gene71989:CDS |
| CTTAGCCTCGGATTGATCCA+TGG | 0.588003 | 8.1:+22745516 | None:intergenic |
| TGCTGGTGAAGCCCATTCCA+AGG | 0.590084 | 8.1:-22743964 | MS.gene71989:CDS |
| CAGGACTTGCTATAATCCCT+GGG | 0.590587 | 8.1:-22744922 | MS.gene71989:intron |
| CCCACTATTGCTGTTATGGA+AGG | 0.594271 | 8.1:-22745154 | MS.gene71989:CDS |
| GCCCCAGCACAAAATACCCC+GGG | 0.600202 | 8.1:+22745972 | None:intergenic |
| AGCCCCAGCACAAAATACCC+CGG | 0.602391 | 8.1:+22745971 | None:intergenic |
| CAGCGACTACCTAGATTGGT+AGG | 0.605465 | 8.1:-22744464 | MS.gene71989:CDS |
| TTCCACATTGACATTTCTGG+AGG | 0.607707 | 8.1:-22745473 | MS.gene71989:intron |
| GGGCCCTGTAGCAGTAAGGA+TGG | 0.608076 | 8.1:-22743355 | MS.gene71989:CDS |
| AAGCGGAAACCAAGGTACAC+TGG | 0.609624 | 8.1:-22743207 | MS.gene71989:CDS |
| AATACCAAAGATCGACTGGA+AGG | 0.626742 | 8.1:-22743249 | MS.gene71989:CDS |
| TTGCTGAAAAGCGGAAACCA+AGG | 0.638227 | 8.1:-22743215 | MS.gene71989:CDS |
| TCGAAAGATTAATGGCATTG+AGG | 0.647855 | 8.1:-22744408 | MS.gene71989:CDS |
| TTATCTGATCACAGGAACGC+AGG | 0.649519 | 8.1:-22745540 | MS.gene71989:intron |
| CCTTCCATAACAGCAATAGT+GGG | 0.670324 | 8.1:+22745154 | None:intergenic |
| GATCCGCAGTTTAGTTCCCG+GGG | 0.677040 | 8.1:-22745988 | MS.gene71989:CDS |
| GCTAAAAGAGCTATTAACGA+GGG | 0.677278 | 8.1:-22743333 | MS.gene71989:CDS |
| CAGGACCATGGATCAATCCG+AGG | 0.692671 | 8.1:-22745521 | MS.gene71989:CDS |
| GGCTAAAAGAGCTATTAACG+AGG | 0.701626 | 8.1:-22743334 | MS.gene71989:CDS |
| AACCTCCAGAAATGTCAATG+TGG | 0.701845 | 8.1:+22745471 | None:intergenic |
| ATACCCCGGGAACTAAACTG+CGG | 0.727381 | 8.1:+22745985 | None:intergenic |
| ATAGGGAAAGAGATGCTGCG+TGG | 0.727860 | 8.1:-22746065 | MS.gene71989:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCTAATTAAAAGTAATTT+CGG | + | chr8.1:22746044-22746063 | None:intergenic | 10.0% |
| !!! | AAAAAATATAGTTTTTGTTA+TGG | + | chr8.1:22745507-22745526 | None:intergenic | 10.0% |
| !!! | AAGAATTTAGTAATTTTTTT+GGG | + | chr8.1:22745534-22745553 | None:intergenic | 10.0% |
| !!! | CTTTTAATTAGAATATATTT+TGG | - | chr8.1:22746050-22746069 | MS.gene71989:CDS | 10.0% |
| !! | AAAACATTAATTCAAACTAA+TGG | - | chr8.1:22744063-22744082 | MS.gene71989:intron | 15.0% |
| !! | AAAATAAAAAAATACTATGC+TGG | + | chr8.1:22744442-22744461 | None:intergenic | 15.0% |
| !! | ACTCTATGAAAATTAATTAT+AGG | + | chr8.1:22746120-22746139 | None:intergenic | 15.0% |
| !!! | ATCTACCTATTATTTTATTT+TGG | + | chr8.1:22744806-22744825 | None:intergenic | 15.0% |
| !!! | CAAGAATTTAGTAATTTTTT+TGG | + | chr8.1:22745535-22745554 | None:intergenic | 15.0% |
| !!! | TGTCAAATTTTCAATTAAAA+AGG | + | chr8.1:22746202-22746221 | None:intergenic | 15.0% |
| !!! | TTGATTTTTCATTTTTCAAA+GGG | - | chr8.1:22745861-22745880 | MS.gene71989:intron | 15.0% |
| !! | AAATAAACTGAAATGCTTAA+AGG | - | chr8.1:22743806-22743825 | MS.gene71989:intron | 20.0% |
| !! | ACATACTTTAATGATTCAAT+TGG | - | chr8.1:22745964-22745983 | MS.gene71989:CDS | 20.0% |
| !! | AGCTACCAAAATAAAATAAT+AGG | - | chr8.1:22744798-22744817 | MS.gene71989:intron | 20.0% |
| !! | ATTACAAGTCCATATATAAA+TGG | - | chr8.1:22745813-22745832 | MS.gene71989:intron | 20.0% |
| !! | ATTTATATATGGACTTGTAA+TGG | + | chr8.1:22745814-22745833 | None:intergenic | 20.0% |
| !! | TATAAAGAGAAAATACTTGT+AGG | - | chr8.1:22746151-22746170 | MS.gene71989:intron | 20.0% |
| !! | TTATGACATTTAGAAATGTA+GGG | - | chr8.1:22745773-22745792 | MS.gene71989:intron | 20.0% |
| !! | TTTATGACATTTAGAAATGT+AGG | - | chr8.1:22745772-22745791 | MS.gene71989:intron | 20.0% |
| !!! | AAAATTTGACATTTGAGATA+AGG | - | chr8.1:22746211-22746230 | MS.gene71989:intron | 20.0% |
| !!! | AAATATAGTTTTTGTTATGG+TGG | + | chr8.1:22745504-22745523 | None:intergenic | 20.0% |
| !!! | AGTTAGAGTAAACTTTTAAT+AGG | - | chr8.1:22746260-22746279 | MS.gene71989:intron | 20.0% |
| !!! | GTTAGAGTAAACTTTTAATA+GGG | - | chr8.1:22746261-22746280 | MS.gene71989:intron | 20.0% |
| !!! | GTTGATTTTTCATTTTTCAA+AGG | - | chr8.1:22745860-22745879 | MS.gene71989:intron | 20.0% |
| !!! | TAAATTTTCCAGATACATAA+TGG | - | chr8.1:22744827-22744846 | MS.gene71989:intron | 20.0% |
| !!! | TGATTTTTCATTTTTCAAAG+GGG | - | chr8.1:22745862-22745881 | MS.gene71989:intron | 20.0% |
| !!! | TTAATTTTCATAGAGTTGTT+TGG | - | chr8.1:22746124-22746143 | MS.gene71989:intron | 20.0% |
| !!! | TTGAATTTTGTTTGTTTACA+GGG | - | chr8.1:22743506-22743525 | MS.gene71989:intron | 20.0% |
| !!! | TTTGAATTTTGTTTGTTTAC+AGG | - | chr8.1:22743505-22743524 | MS.gene71989:intron | 20.0% |
| ! | AATTCGTTCAAAATCTACTA+CGG | + | chr8.1:22743922-22743941 | None:intergenic | 25.0% |
| ! | ATAAATAACCAACTTGTGTT+TGG | - | chr8.1:22745058-22745077 | MS.gene71989:intron | 25.0% |
| ! | TCAACTAATTCTAACAAAAC+TGG | + | chr8.1:22743409-22743428 | None:intergenic | 25.0% |
| ! | TTGTACTAAATTGTGTATCA+TGG | + | chr8.1:22743954-22743973 | None:intergenic | 25.0% |
| !! | AATTGCATCAATTTGTTTGT+AGG | - | chr8.1:22744587-22744606 | MS.gene71989:intron | 25.0% |
| !! | AATTTGTTTGTAGGATAGTT+TGG | - | chr8.1:22744596-22744615 | MS.gene71989:intron | 25.0% |
| !!! | CTACTATTGTTTCTTTTTGT+GGG | - | chr8.1:22744313-22744332 | MS.gene71989:intron | 25.0% |
| !!! | GCAAAGGATATTATTTTTAC+TGG | - | chr8.1:22745205-22745224 | MS.gene71989:intron | 25.0% |
| !!! | TACTATTGTTTCTTTTTGTG+GGG | - | chr8.1:22744314-22744333 | MS.gene71989:intron | 25.0% |
| AAAATAGAGAGAGAAGTTAC+CGG | + | chr8.1:22743357-22743376 | None:intergenic | 30.0% | |
| AAACCAGTGTTGTCAAATAA+CGG | - | chr8.1:22743881-22743900 | MS.gene71989:intron | 30.0% | |
| AATTTGTAAACATCATACCC+AGG | + | chr8.1:22744734-22744753 | None:intergenic | 30.0% | |
| ACACAGCAAATGAATATGAA+AGG | + | chr8.1:22744370-22744389 | None:intergenic | 30.0% | |
| ATGACGACAAGAATCTATTA+CGG | + | chr8.1:22743859-22743878 | None:intergenic | 30.0% | |
| ATTCACAAAAAACTTAGCCT+CGG | + | chr8.1:22744135-22744154 | None:intergenic | 30.0% | |
| ATTTGTAAACATCATACCCA+GGG | + | chr8.1:22744733-22744752 | None:intergenic | 30.0% | |
| CTGAAGCTAAAAATGCTATA+GGG | - | chr8.1:22743554-22743573 | MS.gene71989:intron | 30.0% | |
| TATACTCTCCATTATGTATC+TGG | + | chr8.1:22744838-22744857 | None:intergenic | 30.0% | |
| TGATCACTATGTAAAGTGAT+CGG | - | chr8.1:22743467-22743486 | MS.gene71989:intron | 30.0% | |
| TTTACTGGTCGAAAGATTAA+TGG | - | chr8.1:22745220-22745239 | MS.gene71989:intron | 30.0% | |
| ! | ATTCTTGTTTATCTGATCAC+AGG | - | chr8.1:22744088-22744107 | MS.gene71989:intron | 30.0% |
| ! | GGACTACTTTATTTGTGAAA+CGG | + | chr8.1:22745563-22745582 | None:intergenic | 30.0% |
| !! | GCTACTATTGTTTCTTTTTG+TGG | - | chr8.1:22744312-22744331 | MS.gene71989:intron | 30.0% |
| !! | TACAAAGTGTTGTCAAATAG+CGG | - | chr8.1:22743969-22743988 | MS.gene71989:CDS | 30.0% |
| !!! | CTTTTTGTTTGAGTTGAGAA+TGG | - | chr8.1:22744974-22744993 | MS.gene71989:intron | 30.0% |
| !!! | TGTTTCTTTTTTCATTGCGT+AGG | - | chr8.1:22744662-22744681 | MS.gene71989:intron | 30.0% |
| AACCCATAGAACACTTATCT+TGG | - | chr8.1:22743280-22743299 | MS.gene71989:CDS | 35.0% | |
| ACAACTTTCCAAACACAAGT+TGG | + | chr8.1:22745069-22745088 | None:intergenic | 35.0% | |
| AGATAAGTGTTCTATGGGTT+TGG | + | chr8.1:22743280-22743299 | None:intergenic | 35.0% | |
| AGGGATTATTGAAGTTAGCT+TGG | - | chr8.1:22743525-22743544 | MS.gene71989:intron | 35.0% | |
| AGTCCAAGATAAGTGTTCTA+TGG | + | chr8.1:22743286-22743305 | None:intergenic | 35.0% | |
| ATACTCTATTGAGTCTTGAC+TGG | + | chr8.1:22746018-22746037 | None:intergenic | 35.0% | |
| ATCACTATGTAAAGTGATCG+GGG | - | chr8.1:22743469-22743488 | MS.gene71989:intron | 35.0% | |
| ATGAAGCGCAAAGATATAAG+AGG | - | chr8.1:22745315-22745334 | MS.gene71989:intron | 35.0% | |
| ATGTAATCTTGTCATGCACA+GGG | - | chr8.1:22745138-22745157 | MS.gene71989:CDS | 35.0% | |
| CATTTAGAAATGTAGGGATC+AGG | - | chr8.1:22745779-22745798 | MS.gene71989:intron | 35.0% | |
| CCTGAAGCTAAAAATGCTAT+AGG | - | chr8.1:22743553-22743572 | MS.gene71989:intron | 35.0% | |
| CTATCAATGGGTATGTTGAT+TGG | - | chr8.1:22745253-22745272 | MS.gene71989:intron | 35.0% | |
| GATCACTATGTAAAGTGATC+GGG | - | chr8.1:22743468-22743487 | MS.gene71989:intron | 35.0% | |
| GCATGTGATATTCGAATATG+TGG | - | chr8.1:22744539-22744558 | MS.gene71989:intron | 35.0% | |
| GCTAAAAGAGCTATTAACGA+GGG | - | chr8.1:22746303-22746322 | MS.gene71989:CDS | 35.0% | |
| GTCCAAGATAAGTGTTCTAT+GGG | + | chr8.1:22743285-22743304 | None:intergenic | 35.0% | |
| TCAAACAAAAAGCAAGTCAC+TGG | + | chr8.1:22744966-22744985 | None:intergenic | 35.0% | |
| TCGAAAGATTAATGGCATTG+AGG | - | chr8.1:22745228-22745247 | MS.gene71989:intron | 35.0% | |
| TGGTTATTTATGCTCATTGC+AGG | + | chr8.1:22745049-22745068 | None:intergenic | 35.0% | |
| TTGTCAAATAGCGGTTATAG+TGG | - | chr8.1:22743978-22743997 | MS.gene71989:CDS | 35.0% | |
| ! | AATTTCAAGTGCCTTGGAAT+GGG | + | chr8.1:22745686-22745705 | None:intergenic | 35.0% |
| ! | CAGTCACTGCCATTTATATA+TGG | + | chr8.1:22745825-22745844 | None:intergenic | 35.0% |
| ! | TTGACATTTGAGATAAGGCA+TGG | - | chr8.1:22746216-22746235 | MS.gene71989:intron | 35.0% |
| !! | ACTGATTTTCCTACCAATCT+AGG | + | chr8.1:22745184-22745203 | None:intergenic | 35.0% |
| !! | ATTGTTTCTTTTTGTGGGGA+AGG | - | chr8.1:22744318-22744337 | MS.gene71989:intron | 35.0% |
| !! | TCTAACATCAGCTTTGGTTT+TGG | - | chr8.1:22746338-22746357 | MS.gene71989:CDS | 35.0% |
| !! | TTGTTTCTTTTTGTGGGGAA+GGG | - | chr8.1:22744319-22744338 | MS.gene71989:intron | 35.0% |
| !!! | CCTATAGCATTTTTAGCTTC+AGG | + | chr8.1:22743556-22743575 | None:intergenic | 35.0% |
| !!! | GGATTTTTTCTTTGCTTTCC+TGG | + | chr8.1:22745483-22745502 | None:intergenic | 35.0% |
| !!! | TTTCGAAGTTTTGAAGTAGG+AGG | + | chr8.1:22743243-22743262 | None:intergenic | 35.0% |
| AAAGGGGTCTATTGTGAAAG+AGG | - | chr8.1:22745878-22745897 | MS.gene71989:intron | 40.0% | |
| AACCTCCAGAAATGTCAATG+TGG | + | chr8.1:22744168-22744187 | None:intergenic | 40.0% | |
| AATACCAAAGATCGACTGGA+AGG | - | chr8.1:22746387-22746406 | MS.gene71989:CDS | 40.0% | |
| ACTGGCATATTCAGATTACC+AGG | + | chr8.1:22746000-22746019 | None:intergenic | 40.0% | |
| ATTATAGCAAGTCCTGTCTC+TGG | + | chr8.1:22744710-22744729 | None:intergenic | 40.0% | |
| CAAACTTCCATTGTCTTGGA+GGG | - | chr8.1:22745405-22745424 | MS.gene71989:intron | 40.0% | |
| CATGTAATCTTGTCATGCAC+AGG | - | chr8.1:22745137-22745156 | MS.gene71989:CDS | 40.0% | |
| CCTTCCATAACAGCAATAGT+GGG | + | chr8.1:22744485-22744504 | None:intergenic | 40.0% | |
| CTGGCATATTCAGATTACCA+GGG | + | chr8.1:22745999-22746018 | None:intergenic | 40.0% | |
| CTGTCAAACTTCCATTGTCT+TGG | - | chr8.1:22745401-22745420 | MS.gene71989:intron | 40.0% | |
| GAAAGATCATATGTTCTCGC+AGG | - | chr8.1:22745628-22745647 | MS.gene71989:intron | 40.0% | |
| GACTGATCTAACATCAGCTT+TGG | - | chr8.1:22746332-22746351 | MS.gene71989:CDS | 40.0% | |
| GGAAGAAGATTGCTATGATC+AGG | - | chr8.1:22746359-22746378 | MS.gene71989:CDS | 40.0% | |
| GGCTAAAAGAGCTATTAACG+AGG | - | chr8.1:22746302-22746321 | MS.gene71989:CDS | 40.0% | |
| GGTAGGAAAATCAGTAGCAA+AGG | - | chr8.1:22745189-22745208 | MS.gene71989:intron | 40.0% | |
| GTAGGAGCAAATGCTTTGAT+GGG | - | chr8.1:22744680-22744699 | MS.gene71989:intron | 40.0% | |
| GTTATAGCATTACAGCGTTG+TGG | - | chr8.1:22744002-22744021 | MS.gene71989:intron | 40.0% | |
| GTTGAATACCAAAGATCGAC+TGG | - | chr8.1:22746383-22746402 | MS.gene71989:CDS | 40.0% | |
| TATGCTCATTGCAGGCTTTA+GGG | + | chr8.1:22745041-22745060 | None:intergenic | 40.0% | |
| TCAAACTTCCATTGTCTTGG+AGG | - | chr8.1:22745404-22745423 | MS.gene71989:intron | 40.0% | |
| TCCTTCCATAACAGCAATAG+TGG | + | chr8.1:22744486-22744505 | None:intergenic | 40.0% | |
| TCGTTCCACATTGACATTTC+TGG | - | chr8.1:22744160-22744179 | MS.gene71989:intron | 40.0% | |
| TGCTCGGGATATCAATCAAA+AGG | - | chr8.1:22745705-22745724 | MS.gene71989:intron | 40.0% | |
| TTATGCTCATTGCAGGCTTT+AGG | + | chr8.1:22745042-22745061 | None:intergenic | 40.0% | |
| ! | AATGTAGGGATCAGGCTTTT+TGG | - | chr8.1:22745787-22745806 | MS.gene71989:intron | 40.0% |
| ! | ATGTAGGGATCAGGCTTTTT+GGG | - | chr8.1:22745788-22745807 | MS.gene71989:intron | 40.0% |
| ! | CAATTTCAAGTGCCTTGGAA+TGG | + | chr8.1:22745687-22745706 | None:intergenic | 40.0% |
| ! | GATGCTTAGCGTAATTTGTC+AGG | - | chr8.1:22743749-22743768 | MS.gene71989:intron | 40.0% |
| ! | TGTACCCACTATTGCTGTTA+TGG | - | chr8.1:22744478-22744497 | MS.gene71989:CDS | 40.0% |
| ! | TGTTTCTTTTTGTGGGGAAG+GGG | - | chr8.1:22744320-22744339 | MS.gene71989:intron | 40.0% |
| ! | TTCCACATTGACATTTCTGG+AGG | - | chr8.1:22744163-22744182 | MS.gene71989:intron | 40.0% |
| !! | ACTATGCTGGTTTCAAAGCT+CGG | + | chr8.1:22744429-22744448 | None:intergenic | 40.0% |
| !! | GTGTCGACTGTCAACAAAAT+GGG | + | chr8.1:22744407-22744426 | None:intergenic | 40.0% |
| !!! | GGGTTTCGAAGTTTTGAAGT+AGG | + | chr8.1:22743246-22743265 | None:intergenic | 40.0% |
| AACACAGCGACTACCTAGAT+TGG | - | chr8.1:22745168-22745187 | MS.gene71989:CDS | 45.0% | |
| AAGAGCTATTAACGAGGGAG+TGG | - | chr8.1:22746308-22746327 | MS.gene71989:CDS | 45.0% | |
| AAGTGAACCCTCCAAGACAA+TGG | + | chr8.1:22745415-22745434 | None:intergenic | 45.0% | |
| ATTGTCTTGGAGGGTTCACT+TGG | - | chr8.1:22745414-22745433 | MS.gene71989:intron | 45.0% | |
| CGTAGGAGCAAATGCTTTGA+TGG | - | chr8.1:22744679-22744698 | MS.gene71989:intron | 45.0% | |
| GGGAAAAGCAGAGAGATGAT+TGG | + | chr8.1:22745584-22745603 | None:intergenic | 45.0% | |
| GTCAAGCTTCACAATCTCAC+TGG | - | chr8.1:22743323-22743342 | MS.gene71989:CDS | 45.0% | |
| GTCATCTCATGTTGAACTCC+AGG | - | chr8.1:22745462-22745481 | MS.gene71989:intron | 45.0% | |
| GTTATGGAAGGAGTAGCTCT+TGG | - | chr8.1:22744494-22744513 | MS.gene71989:intron | 45.0% | |
| TAAGCATCATCGCCGTTAGT+CGG | + | chr8.1:22745605-22745624 | None:intergenic | 45.0% | |
| TAGCCATCCTTACTGCTACA+GGG | + | chr8.1:22746287-22746306 | None:intergenic | 45.0% | |
| TTAGCCATCCTTACTGCTAC+AGG | + | chr8.1:22746288-22746307 | None:intergenic | 45.0% | |
| TTATCTGATCACAGGAACGC+AGG | - | chr8.1:22744096-22744115 | MS.gene71989:intron | 45.0% | |
| TTGCTGAAAAGCGGAAACCA+AGG | - | chr8.1:22746421-22746440 | MS.gene71989:CDS | 45.0% | |
| ! | ATGCTCATTGCAGGCTTTAG+GGG | + | chr8.1:22745040-22745059 | None:intergenic | 45.0% |
| ! | CAAGGCACTTGAAATTGCTC+GGG | - | chr8.1:22745690-22745709 | MS.gene71989:intron | 45.0% |
| ! | CCAAGGCACTTGAAATTGCT+CGG | - | chr8.1:22745689-22745708 | MS.gene71989:intron | 45.0% |
| ! | CCCACTATTGCTGTTATGGA+AGG | - | chr8.1:22744482-22744501 | MS.gene71989:intron | 45.0% |
| ! | GTCAATTACTGTGTTGCTGC+TGG | - | chr8.1:22745655-22745674 | MS.gene71989:intron | 45.0% |
| ! | GTGCCGTTATTTGACAACAC+TGG | + | chr8.1:22743887-22743906 | None:intergenic | 45.0% |
| ! | TGGCTGCATTTGCTGAAAAG+CGG | - | chr8.1:22746412-22746431 | MS.gene71989:CDS | 45.0% |
| ! | TTGATCCGCAGTTTAGTTCC+CGG | - | chr8.1:22743646-22743665 | MS.gene71989:intron | 45.0% |
| !! | AATCTCACTGGCTCAGATTC+CGG | - | chr8.1:22743335-22743354 | MS.gene71989:CDS | 45.0% |
| !! | ACAGGACTTGCTATAATCCC+TGG | - | chr8.1:22744713-22744732 | MS.gene71989:intron | 45.0% |
| !! | ATGGGTTTGGTGCTGATGAT+AGG | + | chr8.1:22743267-22743286 | None:intergenic | 45.0% |
| !! | CAGGACTTGCTATAATCCCT+GGG | - | chr8.1:22744714-22744733 | MS.gene71989:intron | 45.0% |
| !! | GGTGTCGACTGTCAACAAAA+TGG | + | chr8.1:22744408-22744427 | None:intergenic | 45.0% |
| !! | TCTCTGCTTTTCCCGACTAA+CGG | - | chr8.1:22745590-22745609 | MS.gene71989:intron | 45.0% |
| !! | TCTTGGTGGTGGACTTGAAA+TGG | - | chr8.1:22744511-22744530 | MS.gene71989:intron | 45.0% |
| !! | TGGGTTTGGTGCTGATGATA+GGG | + | chr8.1:22743266-22743285 | None:intergenic | 45.0% |
| !! | TGGTGGACTTGAAATGGCTT+TGG | - | chr8.1:22744517-22744536 | MS.gene71989:intron | 45.0% |
| !! | TAATAACAAAAAAAAAAAAA+AGG | + | chr8.1:22743707-22743726 | None:intergenic | 5.0% |
| !!! | TATTTTTTTATTTTTTATTC+AGG | - | chr8.1:22744448-22744467 | MS.gene71989:CDS | 5.0% |
| AAGCATCATCGCCGTTAGTC+GGG | + | chr8.1:22745604-22745623 | None:intergenic | 50.0% | |
| AAGCGGAAACCAAGGTACAC+TGG | - | chr8.1:22746429-22746448 | MS.gene71989:CDS | 50.0% | |
| AATAGGGCCCTGTAGCAGTA+AGG | - | chr8.1:22746277-22746296 | MS.gene71989:intron | 50.0% | |
| AATCTTGTCATGCACAGGGC+AGG | - | chr8.1:22745142-22745161 | MS.gene71989:CDS | 50.0% | |
| ATACCCCGGGAACTAAACTG+CGG | + | chr8.1:22743654-22743673 | None:intergenic | 50.0% | |
| ATAGGGAAAGAGATGCTGCG+TGG | - | chr8.1:22743571-22743590 | MS.gene71989:intron | 50.0% | |
| ATGGAAGGAGTAGCTCTTGG+TGG | - | chr8.1:22744497-22744516 | MS.gene71989:intron | 50.0% | |
| CAAAGATCGACTGGAAGGCT+TGG | - | chr8.1:22746392-22746411 | MS.gene71989:CDS | 50.0% | |
| CAAGCCTTCCAGTCGATCTT+TGG | + | chr8.1:22746394-22746413 | None:intergenic | 50.0% | |
| CAGCGACTACCTAGATTGGT+AGG | - | chr8.1:22745172-22745191 | MS.gene71989:intron | 50.0% | |
| CTTAGCCTCGGATTGATCCA+TGG | + | chr8.1:22744123-22744142 | None:intergenic | 50.0% | |
| TCAATTGGCGCAATTGACCC+TGG | - | chr8.1:22745979-22745998 | MS.gene71989:CDS | 50.0% | |
| TTGTGCTGGGGCTGATCTAA+AGG | - | chr8.1:22743675-22743694 | MS.gene71989:intron | 50.0% | |
| ! | CCGAGCAATTTCAAGTGCCT+TGG | + | chr8.1:22745692-22745711 | None:intergenic | 50.0% |
| ! | GGCATTGAGGCGCTATCAAT+GGG | - | chr8.1:22745241-22745260 | MS.gene71989:intron | 50.0% |
| ! | TCTTTTTGTGGGGAAGGGGT+TGG | - | chr8.1:22744324-22744343 | MS.gene71989:intron | 50.0% |
| ! | TGATCCGCAGTTTAGTTCCC+GGG | - | chr8.1:22743647-22743666 | MS.gene71989:intron | 50.0% |
| ! | TGGCATTGAGGCGCTATCAA+TGG | - | chr8.1:22745240-22745259 | MS.gene71989:intron | 50.0% |
| !! | TTCCCGGGGTATTTTGTGCT+GGG | - | chr8.1:22743662-22743681 | MS.gene71989:intron | 50.0% |
| !! | TTGATGGGTTTGCCAGAGAC+AGG | - | chr8.1:22744695-22744714 | MS.gene71989:intron | 50.0% |
| AGCCCCAGCACAAAATACCC+CGG | + | chr8.1:22743668-22743687 | None:intergenic | 55.0% | |
| AGCTGAACGAAAGAGACGCG+TGG | + | chr8.1:22744782-22744801 | None:intergenic | 55.0% | |
| ATCACAGGAACGCAGGACCA+TGG | - | chr8.1:22744103-22744122 | MS.gene71989:intron | 55.0% | |
| CAGGACCATGGATCAATCCG+AGG | - | chr8.1:22744115-22744134 | MS.gene71989:intron | 55.0% | |
| GAAGGAGTAGCTCTTGGTGG+TGG | - | chr8.1:22744500-22744519 | MS.gene71989:intron | 55.0% | |
| TGCTGGTGAAGCCCATTCCA+AGG | - | chr8.1:22745672-22745691 | MS.gene71989:intron | 55.0% | |
| ! | GATCCGCAGTTTAGTTCCCG+GGG | - | chr8.1:22743648-22743667 | MS.gene71989:intron | 55.0% |
| !! | GTTCCCGGGGTATTTTGTGC+TGG | - | chr8.1:22743661-22743680 | MS.gene71989:intron | 55.0% |
| !! | TCCCGGGGTATTTTGTGCTG+GGG | - | chr8.1:22743663-22743682 | MS.gene71989:intron | 55.0% |
| CTTGTCATGCACAGGGCAGG+TGG | - | chr8.1:22745145-22745164 | MS.gene71989:CDS | 60.0% | |
| GCCCCAGCACAAAATACCCC+GGG | + | chr8.1:22743667-22743686 | None:intergenic | 60.0% | |
| GGGCCCTGTAGCAGTAAGGA+TGG | - | chr8.1:22746281-22746300 | MS.gene71989:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 22743200 | 22746458 | 22743200 | ID=MS.gene71989 |
| chr8.1 | mRNA | 22743200 | 22746458 | 22743200 | ID=MS.gene71989.t1;Parent=MS.gene71989 |
| chr8.1 | exon | 22746302 | 22746458 | 22746302 | ID=MS.gene71989.t1.exon1;Parent=MS.gene71989.t1 |
| chr8.1 | CDS | 22746302 | 22746458 | 22746302 | ID=cds.MS.gene71989.t1;Parent=MS.gene71989.t1 |
| chr8.1 | exon | 22745962 | 22746131 | 22745962 | ID=MS.gene71989.t1.exon2;Parent=MS.gene71989.t1 |
| chr8.1 | CDS | 22745962 | 22746131 | 22745962 | ID=cds.MS.gene71989.t1;Parent=MS.gene71989.t1 |
| chr8.1 | exon | 22745474 | 22745548 | 22745474 | ID=MS.gene71989.t1.exon3;Parent=MS.gene71989.t1 |
| chr8.1 | CDS | 22745474 | 22745548 | 22745474 | ID=cds.MS.gene71989.t1;Parent=MS.gene71989.t1 |
| chr8.1 | exon | 22745098 | 22745188 | 22745098 | ID=MS.gene71989.t1.exon4;Parent=MS.gene71989.t1 |
| chr8.1 | CDS | 22745098 | 22745188 | 22745098 | ID=cds.MS.gene71989.t1;Parent=MS.gene71989.t1 |
| chr8.1 | exon | 22744923 | 22744974 | 22744923 | ID=MS.gene71989.t1.exon5;Parent=MS.gene71989.t1 |
| chr8.1 | CDS | 22744923 | 22744974 | 22744923 | ID=cds.MS.gene71989.t1;Parent=MS.gene71989.t1 |
| chr8.1 | exon | 22744396 | 22744499 | 22744396 | ID=MS.gene71989.t1.exon6;Parent=MS.gene71989.t1 |
| chr8.1 | CDS | 22744396 | 22744499 | 22744396 | ID=cds.MS.gene71989.t1;Parent=MS.gene71989.t1 |
| chr8.1 | exon | 22743932 | 22744008 | 22743932 | ID=MS.gene71989.t1.exon7;Parent=MS.gene71989.t1 |
| chr8.1 | CDS | 22743932 | 22744008 | 22743932 | ID=cds.MS.gene71989.t1;Parent=MS.gene71989.t1 |
| chr8.1 | exon | 22743200 | 22743376 | 22743200 | ID=MS.gene71989.t1.exon8;Parent=MS.gene71989.t1 |
| chr8.1 | CDS | 22743200 | 22743376 | 22743200 | ID=cds.MS.gene71989.t1;Parent=MS.gene71989.t1 |
| Gene Sequence |
| Protein sequence |
