AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene72010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72010.t1 MTR_2g043370 90.517 232 12 2 1 222 1 232 1.67e-141 396
MS.gene72010.t1 MTR_7g076600 36.066 244 133 4 2 222 17 260 3.88e-47 157
MS.gene72010.t1 MTR_1g047620 34.831 178 95 3 2 176 17 176 1.60e-33 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 47 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAAATGCTATTGTTTATA+AGG 0.183643 2.3:-46612505 MS.gene72010:intron
TTGATATTAGCTTGGGGAAT+TGG 0.256716 2.3:-46612606 MS.gene72010:CDS
TACCTTAGAGAAGGGTTTAT+TGG 0.262362 2.3:-46612736 MS.gene72010:CDS
CCGGTACCGTTTCCATGTTT+TGG 0.290443 2.3:-46611614 MS.gene72010:CDS
TTCCAATAAACCCTTCTCTA+AGG 0.300083 2.3:+46612734 None:intergenic
TCTCATTTCTCATGTTTGAT+AGG 0.309735 2.3:+46610769 None:intergenic
AATACCTTCTTGAAAGCATT+AGG 0.326852 2.3:+46610912 None:intergenic
TTGAAAATGTTGGAGTTAGA+AGG 0.334068 2.3:-46610974 MS.gene72010:CDS
TGATATTAGCTTGGGGAATT+GGG 0.340131 2.3:-46612605 MS.gene72010:CDS
TGCAGCATCGTTTCAAGAAA+TGG 0.345990 2.3:-46612682 MS.gene72010:CDS
TGCTTTATGTACCAGTTAGA+AGG 0.346663 2.3:-46612572 MS.gene72010:CDS
AAACAATAGCATTTGGAGTA+AGG 0.358216 2.3:+46612511 None:intergenic
CTAAGTATAAACCTTCTAAC+TGG 0.364571 2.3:+46612561 None:intergenic
AGAAGATGGTTCGCATTTGA+TGG 0.375797 2.3:-46610721 MS.gene72010:intron
CTCTGTTATTGATATTAGCT+TGG 0.381718 2.3:-46612614 MS.gene72010:CDS
TCTGTTATTGATATTAGCTT+GGG 0.384025 2.3:-46612613 MS.gene72010:CDS
ACCTTATAAACAATAGCATT+TGG 0.387126 2.3:+46612504 None:intergenic
CAGTGACGATGTTAAAATCT+TGG 0.391514 2.3:-46610946 MS.gene72010:CDS
TCTCTTAGAATTGAAAATGT+TGG 0.435318 2.3:-46610984 MS.gene72010:CDS
TAAGAGAATATACACCGAAA+AGG 0.449056 2.3:+46611000 None:intergenic
GGAAGTTGGAAGCTCTGTTA+AGG 0.468716 2.3:-46610417 MS.gene72010:CDS
AGAAAGTAAACGCTGCATAT+AGG 0.471749 2.3:-46610393 None:intergenic
AGTGACGATGTTAAAATCTT+GGG 0.484992 2.3:-46610945 MS.gene72010:CDS
AAAGTACCCACTGTACTGTT+TGG 0.489475 2.3:+46612640 None:intergenic
TTGCAGAAGCTGGAGGAAGT+TGG 0.490194 2.3:-46610431 MS.gene72010:CDS
AAGAGAATATACACCGAAAA+GGG 0.491442 2.3:+46611001 None:intergenic
TCTGCTACTATTGCAGAAGC+TGG 0.525441 2.3:-46610441 MS.gene72010:CDS
TCATATCTCAATGACTTGGA+TGG 0.539115 2.3:+46610482 None:intergenic
CCAAAACATGGAAACGGTAC+CGG 0.543194 2.3:+46611614 None:intergenic
GGAAATAGATACCTTAGAGA+AGG 0.551779 2.3:-46612745 MS.gene72010:CDS
GAAATAGATACCTTAGAGAA+GGG 0.553643 2.3:-46612744 MS.gene72010:CDS
AAATCCTAATGCTTTCAAGA+AGG 0.556507 2.3:-46610916 MS.gene72010:intron
CATGTGTCTACATTAGAAGA+TGG 0.559672 2.3:-46610735 MS.gene72010:CDS
TTATGCAGCACTCCAAAACA+TGG 0.560395 2.3:+46611602 None:intergenic
CTGTTATTGATATTAGCTTG+GGG 0.569273 2.3:-46612612 MS.gene72010:CDS
TCTAGCTCAGGTCACAAGGC+CGG 0.575112 2.3:-46611633 MS.gene72010:intron
CAAGTACCAAACAGTACAGT+GGG 0.576403 2.3:-46612646 MS.gene72010:CDS
AGAATCATATCTCAATGACT+TGG 0.577202 2.3:+46610478 None:intergenic
AACAACAATGGATGAAGTAG+TGG 0.577356 2.3:-46612766 None:intergenic
AGCACTCCAAAACATGGAAA+CGG 0.586314 2.3:+46611608 None:intergenic
TATATCTAGCTCAGGTCACA+AGG 0.589332 2.3:-46611637 MS.gene72010:intron
GCATTCTGTGGCTGATGTCG+TGG 0.596159 2.3:-46611561 MS.gene72010:CDS
GCTGATGTCGTGGTTGAACA+AGG 0.624287 2.3:-46611551 MS.gene72010:intron
GCATGTCTTATTGCATTCTG+TGG 0.631218 2.3:-46611573 MS.gene72010:CDS
ATATGATTCTACTCATTCTG+AGG 0.633241 2.3:-46610465 MS.gene72010:CDS
GCTACTATTGCAGAAGCTGG+AGG 0.634604 2.3:-46610438 MS.gene72010:CDS
TCAAGTACCAAACAGTACAG+TGG 0.671926 2.3:-46612647 MS.gene72010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTGAAAAAAATAAAAAAA+GGG + chr2.3:46611674-46611693 None:intergenic 10.0%
!! TACTTGAAAAAAATAAAAAA+AGG + chr2.3:46611675-46611694 None:intergenic 10.0%
!!! ATTTTTTTATTTTTTTCTGT+TGG - chr2.3:46610711-46610730 MS.gene72010:intron 10.0%
!!! TTTTTTTATTTTTTTCTGTT+GGG - chr2.3:46610712-46610731 MS.gene72010:intron 10.0%
!! AATACATTAATATGTATAAG+AGG - chr2.3:46610824-46610843 MS.gene72010:intron 15.0%
!! CATAATTATATAATTACATG+AGG + chr2.3:46611753-46611772 None:intergenic 15.0%
!! CTCATGTAATTATATAATTA+TGG - chr2.3:46611751-46611770 MS.gene72010:intron 15.0%
!! GATATAATTAATCATATACT+AGG + chr2.3:46611793-46611812 None:intergenic 15.0%
!! GTATATTATTACTGAATATT+GGG - chr2.3:46611141-46611160 MS.gene72010:intron 15.0%
!! TATAAATTGAAAGAAATAGT+AGG + chr2.3:46610692-46610711 None:intergenic 15.0%
!!! AGAAATCATAGTTTTAAATT+AGG + chr2.3:46612019-46612038 None:intergenic 15.0%
!!! ATAAACTATGAATTTGTTAT+TGG - chr2.3:46611003-46611022 MS.gene72010:CDS 15.0%
!!! GAAATCATAGTTTTAAATTA+GGG + chr2.3:46612018-46612037 None:intergenic 15.0%
!! AAGTAAACGACTTATATTAT+TGG + chr2.3:46612529-46612548 None:intergenic 20.0%
!! ATAATTTATCAAGAAAGTGA+AGG + chr2.3:46610933-46610952 None:intergenic 20.0%
!! ATGTATTATATTTGCATGTA+TGG - chr2.3:46611465-46611484 MS.gene72010:intron 20.0%
!! GGTATATTATTACTGAATAT+TGG - chr2.3:46611140-46611159 MS.gene72010:intron 20.0%
!! TAGAAATTAAACTACAAAAC+CGG + chr2.3:46612092-46612111 None:intergenic 20.0%
!!! AAATGGCATTAAACTTTTAA+GGG - chr2.3:46611276-46611295 MS.gene72010:intron 20.0%
!!! ATGCTATTTACAATAGTTAT+GGG - chr2.3:46611820-46611839 MS.gene72010:intron 20.0%
!!! CAATTTTTTCCTCTATATTT+TGG - chr2.3:46612483-46612502 MS.gene72010:intron 20.0%
!!! CTATATTAACATCTTTTACT+AGG + chr2.3:46611090-46611109 None:intergenic 20.0%
!!! TATGCTATTTACAATAGTTA+TGG - chr2.3:46611819-46611838 MS.gene72010:intron 20.0%
!!! TGAATTTTTGTTGTTGAAAT+TGG - chr2.3:46610779-46610798 MS.gene72010:CDS 20.0%
!!! TTAAAAGTTTAATGCCATTT+GGG + chr2.3:46611276-46611295 None:intergenic 20.0%
! AAGAAAATCACAATTTGATC+AGG + chr2.3:46612275-46612294 None:intergenic 25.0%
! AATCAATATCCTTTCTATTG+TGG - chr2.3:46611973-46611992 MS.gene72010:intron 25.0%
! ACCTTATAAACAATAGCATT+TGG + chr2.3:46610652-46610671 None:intergenic 25.0%
! ATTAATGATACTTGCTCATA+GGG - chr2.3:46612119-46612138 MS.gene72010:intron 25.0%
! ATTATATAATTACATGAGGC+TGG + chr2.3:46611749-46611768 None:intergenic 25.0%
! CTTAAAAGTTTAATGCCATT+TGG + chr2.3:46611277-46611296 None:intergenic 25.0%
! GGAAAAAATTGAATACTTCT+CGG + chr2.3:46612474-46612493 None:intergenic 25.0%
! TAGTTTCATGCTATAAGATT+TGG - chr2.3:46611696-46611715 MS.gene72010:intron 25.0%
! TCCAAATGCTATTGTTTATA+AGG - chr2.3:46610648-46610667 MS.gene72010:intron 25.0%
! TCTCTTAGAATTGAAAATGT+TGG - chr2.3:46612169-46612188 MS.gene72010:intron 25.0%
! TTTACTAGGATTTAAACATG+AGG + chr2.3:46611076-46611095 None:intergenic 25.0%
!! CAAATGGCATTAAACTTTTA+AGG - chr2.3:46611275-46611294 MS.gene72010:intron 25.0%
!! TCTGTTATTGATATTAGCTT+GGG - chr2.3:46610540-46610559 MS.gene72010:intron 25.0%
!! TGCTATTTACAATAGTTATG+GGG - chr2.3:46611821-46611840 MS.gene72010:intron 25.0%
AAATCCTAATGCTTTCAAGA+AGG - chr2.3:46612237-46612256 MS.gene72010:intron 30.0%
AAATTGAATACTTCTCGGAT+TGG + chr2.3:46612469-46612488 None:intergenic 30.0%
AAGAGAATATACACCGAAAA+GGG + chr2.3:46612155-46612174 None:intergenic 30.0%
AGAATCATATCTCAATGACT+TGG + chr2.3:46612678-46612697 None:intergenic 30.0%
AGTGACGATGTTAAAATCTT+GGG - chr2.3:46612208-46612227 MS.gene72010:intron 30.0%
AGTGAGTGATGTATCATAAA+AGG + chr2.3:46611392-46611411 None:intergenic 30.0%
ATACCTGGTCTATATTCAAA+AGG - chr2.3:46611360-46611379 MS.gene72010:intron 30.0%
ATATGATTCTACTCATTCTG+AGG - chr2.3:46612688-46612707 MS.gene72010:CDS 30.0%
ATTATATAATTATGGCCCTC+TGG - chr2.3:46611759-46611778 MS.gene72010:intron 30.0%
CAAAAGTGACCAAAATATAG+AGG + chr2.3:46612495-46612514 None:intergenic 30.0%
CATTAATTGTACCTGTTCAT+AGG - chr2.3:46612046-46612065 MS.gene72010:intron 30.0%
CTAAGTATAAACCTTCTAAC+TGG + chr2.3:46610595-46610614 None:intergenic 30.0%
CTCTGTTATTGATATTAGCT+TGG - chr2.3:46610539-46610558 MS.gene72010:intron 30.0%
GAAATAGATACCTTAGAGAA+GGG - chr2.3:46610409-46610428 MS.gene72010:CDS 30.0%
GATTAATGATACTTGCTCAT+AGG - chr2.3:46612118-46612137 MS.gene72010:intron 30.0%
TAAGAGAATATACACCGAAA+AGG + chr2.3:46612156-46612175 None:intergenic 30.0%
TATAAGTCGTTTACTTATCC+CGG - chr2.3:46612533-46612552 MS.gene72010:CDS 30.0%
TCTCATTTCTCATGTTTGAT+AGG + chr2.3:46612387-46612406 None:intergenic 30.0%
TGTCTAAATTGTGGTTTCAA+TGG - chr2.3:46611939-46611958 MS.gene72010:intron 30.0%
TTGAAAATGTTGGAGTTAGA+AGG - chr2.3:46612179-46612198 MS.gene72010:intron 30.0%
! AAACAATAGCATTTGGAGTA+AGG + chr2.3:46610645-46610664 None:intergenic 30.0%
! ACTCACTTTAGACATGATTT+TGG - chr2.3:46611405-46611424 MS.gene72010:intron 30.0%
! CTCACTTTAGACATGATTTT+GGG - chr2.3:46611406-46611425 MS.gene72010:intron 30.0%
! CTGTTATTGATATTAGCTTG+GGG - chr2.3:46610541-46610560 MS.gene72010:intron 30.0%
! GAATGAGTTGAGAAGTTAAA+GGG - chr2.3:46611050-46611069 MS.gene72010:intron 30.0%
! TGAATGAGTTGAGAAGTTAA+AGG - chr2.3:46611049-46611068 MS.gene72010:intron 30.0%
! TTACCTTTTGAATATAGACC+AGG + chr2.3:46611366-46611385 None:intergenic 30.0%
! TTCTGTGTTCTTTAAGCTTT+TGG - chr2.3:46611644-46611663 MS.gene72010:intron 30.0%
! TTTCATTTTCCTACATGTTG+CGG + chr2.3:46611912-46611931 None:intergenic 30.0%
! TTTTCTGTTGGGAATATTAC+TGG - chr2.3:46610723-46610742 MS.gene72010:CDS 30.0%
!! AAGATTTTAACATCGTCACT+GGG + chr2.3:46612208-46612227 None:intergenic 30.0%
!! AATACCTTCTTGAAAGCATT+AGG + chr2.3:46612244-46612263 None:intergenic 30.0%
!! ATGAATTTGTTATTGGAGCT+GGG - chr2.3:46611010-46611029 MS.gene72010:CDS 30.0%
!! CTGTCTTGTTTGTAATCAAA+GGG + chr2.3:46611174-46611193 None:intergenic 30.0%
!! TATGAATTTGTTATTGGAGC+TGG - chr2.3:46611009-46611028 MS.gene72010:CDS 30.0%
!! TGTCTTGTTTGTAATCAAAG+GGG + chr2.3:46611173-46611192 None:intergenic 30.0%
!!! AAACTTCTTTTTTCTTTGCC+TGG - chr2.3:46612336-46612355 MS.gene72010:intron 30.0%
AAACCACAATTTAGACAGCA+AGG + chr2.3:46611936-46611955 None:intergenic 35.0%
AGGCTGGAAGAATAAAAGTA+AGG + chr2.3:46611733-46611752 None:intergenic 35.0%
ATACTAGGAATTACAACCAG+AGG + chr2.3:46611778-46611797 None:intergenic 35.0%
ATAGTAACATTTAGCGTTCG+TGG - chr2.3:46611106-46611125 MS.gene72010:intron 35.0%
ATCAAGAAAGTGAAGGCAAA+CGG + chr2.3:46610926-46610945 None:intergenic 35.0%
CAAAACCAATCCTCTTCAAT+AGG + chr2.3:46610869-46610888 None:intergenic 35.0%
CAGTGACGATGTTAAAATCT+TGG - chr2.3:46612207-46612226 MS.gene72010:intron 35.0%
CATGTGTCTACATTAGAAGA+TGG - chr2.3:46612418-46612437 MS.gene72010:intron 35.0%
CATTGTTTAAATTGCGACTG+TGG - chr2.3:46611857-46611876 MS.gene72010:intron 35.0%
CTCTAATCAAAACTCCCAAA+TGG - chr2.3:46611259-46611278 MS.gene72010:intron 35.0%
GGAAATAGATACCTTAGAGA+AGG - chr2.3:46610408-46610427 MS.gene72010:CDS 35.0%
TAACAGCCTAAAAAGAAACC+AGG + chr2.3:46612357-46612376 None:intergenic 35.0%
TACATGTTGCGGCAATATAA+AGG + chr2.3:46611901-46611920 None:intergenic 35.0%
TACCTTAGAGAAGGGTTTAT+TGG - chr2.3:46610417-46610436 MS.gene72010:CDS 35.0%
TACTAGGAATTACAACCAGA+GGG + chr2.3:46611777-46611796 None:intergenic 35.0%
TGCTTTATGTACCAGTTAGA+AGG - chr2.3:46610581-46610600 MS.gene72010:intron 35.0%
TGTTGGGAATATTACTGGTA+TGG - chr2.3:46610728-46610747 MS.gene72010:CDS 35.0%
TTAACTGCTGTTGTTCATGT+TGG - chr2.3:46612595-46612614 MS.gene72010:CDS 35.0%
TTCCAATAAACCCTTCTCTA+AGG + chr2.3:46610422-46610441 None:intergenic 35.0%
TTTATATTGCCGCAACATGT+AGG - chr2.3:46611900-46611919 MS.gene72010:intron 35.0%
TTTCTATTGTGGCTGCAATT+GGG - chr2.3:46611984-46612003 MS.gene72010:intron 35.0%
! AATCCTTGCTGTCTAAATTG+TGG - chr2.3:46611930-46611949 MS.gene72010:intron 35.0%
! ACTTTAGACATGATTTTGGG+TGG - chr2.3:46611409-46611428 MS.gene72010:intron 35.0%
! ATCTGTGTTATATCTAGCTC+AGG - chr2.3:46611508-46611527 MS.gene72010:intron 35.0%
! TCATATCTCAATGACTTGGA+TGG + chr2.3:46612674-46612693 None:intergenic 35.0%
! TCTTTGCCTGGTTTCTTTTT+AGG - chr2.3:46612348-46612367 MS.gene72010:intron 35.0%
! TGATATTAGCTTGGGGAATT+GGG - chr2.3:46610548-46610567 MS.gene72010:intron 35.0%
! TTGATATTAGCTTGGGGAAT+TGG - chr2.3:46610547-46610566 MS.gene72010:intron 35.0%
!! CAAGATTTTAACATCGTCAC+TGG + chr2.3:46612209-46612228 None:intergenic 35.0%
!! GCTGTCTTGTTTGTAATCAA+AGG + chr2.3:46611175-46611194 None:intergenic 35.0%
!!! AGAGGATTTGTTTTGTCTTC+TGG - chr2.3:46610842-46610861 MS.gene72010:intron 35.0%
!!! GAGGATTTGTTTTGTCTTCT+GGG - chr2.3:46610843-46610862 MS.gene72010:intron 35.0%
!!! TTGGGAGTTTTGATTAGAGA+GGG + chr2.3:46611258-46611277 None:intergenic 35.0%
!!! TTTGGGAGTTTTGATTAGAG+AGG + chr2.3:46611259-46611278 None:intergenic 35.0%
AGAAGATGGTTCGCATTTGA+TGG - chr2.3:46612432-46612451 MS.gene72010:intron 40.0%
AGCACTCCAAAACATGGAAA+CGG + chr2.3:46611548-46611567 None:intergenic 40.0%
AGGAATAGAGCCTTTGTCAT+CGG + chr2.3:46611216-46611235 None:intergenic 40.0%
CAAGTACCAAACAGTACAGT+GGG - chr2.3:46610507-46610526 MS.gene72010:intron 40.0%
CAATTGCAGCCACAATAGAA+AGG + chr2.3:46611985-46612004 None:intergenic 40.0%
CTTTCTATTGTGGCTGCAAT+TGG - chr2.3:46611983-46612002 MS.gene72010:intron 40.0%
GTGAGTAGTATCCTATGAAC+AGG + chr2.3:46612060-46612079 None:intergenic 40.0%
TACTACTCACAAAGTTGCAC+CGG - chr2.3:46612070-46612089 MS.gene72010:intron 40.0%
TCAAGAAAGTGAAGGCAAAC+GGG + chr2.3:46610925-46610944 None:intergenic 40.0%
TCAAGTACCAAACAGTACAG+TGG - chr2.3:46610506-46610525 MS.gene72010:intron 40.0%
TGCAGCATCGTTTCAAGAAA+TGG - chr2.3:46610471-46610490 MS.gene72010:CDS 40.0%
TTAAATTGCGACTGTGGTTG+CGG - chr2.3:46611863-46611882 MS.gene72010:intron 40.0%
TTATGCAGCACTCCAAAACA+TGG + chr2.3:46611554-46611573 None:intergenic 40.0%
TTCTATTGTGGCTGCAATTG+GGG - chr2.3:46611985-46612004 MS.gene72010:intron 40.0%
! AAAGTACCCACTGTACTGTT+TGG + chr2.3:46610516-46610535 None:intergenic 40.0%
! AGGGCAACATCTTGTCATTT+GGG + chr2.3:46611239-46611258 None:intergenic 40.0%
! GCATGTCTTATTGCATTCTG+TGG - chr2.3:46611580-46611599 MS.gene72010:CDS 40.0%
! TATATCTAGCTCAGGTCACA+AGG - chr2.3:46611516-46611535 MS.gene72010:intron 40.0%
!! ATTTTAACATCGTCACTGGG+TGG + chr2.3:46612205-46612224 None:intergenic 40.0%
!! GACATGATTTTGGGTGGTTT+TGG - chr2.3:46611415-46611434 MS.gene72010:intron 40.0%
!! TGTCATCCAGAAAGTGTTAG+CGG - chr2.3:46610887-46610906 MS.gene72010:intron 40.0%
!!! TGGTCACTTTTGCTTCTAAG+TGG - chr2.3:46612503-46612522 MS.gene72010:intron 40.0%
ACAAACAAGACAGCACTTCG+AGG - chr2.3:46611181-46611200 MS.gene72010:intron 45.0%
ACCCTCAACTTGAGATTTCC+GGG + chr2.3:46612554-46612573 None:intergenic 45.0%
CAAACAAGACAGCACTTCGA+GGG - chr2.3:46611182-46611201 MS.gene72010:intron 45.0%
CACCCTCAACTTGAGATTTC+CGG + chr2.3:46612555-46612574 None:intergenic 45.0%
CCAAAACATGGAAACGGTAC+CGG + chr2.3:46611542-46611561 None:intergenic 45.0%
GAGGGCAACATCTTGTCATT+TGG + chr2.3:46611240-46611259 None:intergenic 45.0%
GGAAGTTGGAAGCTCTGTTA+AGG - chr2.3:46612736-46612755 MS.gene72010:CDS 45.0%
GGAATAGAGCCTTTGTCATC+GGG + chr2.3:46611215-46611234 None:intergenic 45.0%
TCTGCTACTATTGCAGAAGC+TGG - chr2.3:46612712-46612731 MS.gene72010:CDS 45.0%
! ATCCCGGAAATCTCAAGTTG+AGG - chr2.3:46612549-46612568 MS.gene72010:CDS 45.0%
! GCAACATCTTGTCATTTGGG+AGG + chr2.3:46611236-46611255 None:intergenic 45.0%
! GGGTACTTGCAATCCCTTTT+CGG - chr2.3:46612139-46612158 MS.gene72010:intron 45.0%
! GTTGCTCATGTGGTTCTATC+TGG - chr2.3:46611305-46611324 MS.gene72010:intron 45.0%
!! TCCCGGAAATCTCAAGTTGA+GGG - chr2.3:46612550-46612569 MS.gene72010:CDS 45.0%
!!! AGGGAGTTTTGTTGCTCATG+TGG - chr2.3:46611295-46611314 MS.gene72010:intron 45.0%
CTGGGCCTATTGAAGAGGAT+TGG - chr2.3:46610861-46610880 MS.gene72010:intron 50.0%
GCGTTCGTGGTAGAACAAAC+TGG - chr2.3:46611119-46611138 MS.gene72010:intron 50.0%
GCTACTATTGCAGAAGCTGG+AGG - chr2.3:46612715-46612734 MS.gene72010:CDS 50.0%
GCTGATGTCGTGGTTGAACA+AGG - chr2.3:46611602-46611621 MS.gene72010:CDS 50.0%
GTCTTCTGGGCCTATTGAAG+AGG - chr2.3:46610856-46610875 MS.gene72010:intron 50.0%
TTGCAGAAGCTGGAGGAAGT+TGG - chr2.3:46612722-46612741 MS.gene72010:CDS 50.0%
TTGTGGTTTCAATGGCGTCG+CGG - chr2.3:46611947-46611966 MS.gene72010:intron 50.0%
! CCGGTACCGTTTCCATGTTT+TGG - chr2.3:46611539-46611558 MS.gene72010:intron 50.0%
CTAGTTGCGCGCAAGATACC+TGG - chr2.3:46611345-46611364 MS.gene72010:intron 55.0%
GCATTCTGTGGCTGATGTCG+TGG - chr2.3:46611592-46611611 MS.gene72010:CDS 55.0%
GGTCTGCTTCCCGATGACAA+AGG - chr2.3:46611203-46611222 MS.gene72010:intron 55.0%
! TCTAGCTCAGGTCACAAGGC+CGG - chr2.3:46611520-46611539 MS.gene72010:intron 55.0%
GCTGCGCCGCTAACACTTTC+TGG + chr2.3:46610896-46610915 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 46610394 46612781 46610394 ID=MS.gene72010
chr2.3 mRNA 46610394 46612781 46610394 ID=MS.gene72010.t1;Parent=MS.gene72010
chr2.3 exon 46612506 46612781 46612506 ID=MS.gene72010.t1.exon1;Parent=MS.gene72010.t1
chr2.3 CDS 46612506 46612781 46612506 ID=cds.MS.gene72010.t1;Parent=MS.gene72010.t1
chr2.3 exon 46611552 46611645 46611552 ID=MS.gene72010.t1.exon2;Parent=MS.gene72010.t1
chr2.3 CDS 46611552 46611645 46611552 ID=cds.MS.gene72010.t1;Parent=MS.gene72010.t1
chr2.3 exon 46610917 46611035 46610917 ID=MS.gene72010.t1.exon3;Parent=MS.gene72010.t1
chr2.3 CDS 46610917 46611035 46610917 ID=cds.MS.gene72010.t1;Parent=MS.gene72010.t1
chr2.3 exon 46610722 46610805 46610722 ID=MS.gene72010.t1.exon4;Parent=MS.gene72010.t1
chr2.3 CDS 46610722 46610805 46610722 ID=cds.MS.gene72010.t1;Parent=MS.gene72010.t1
chr2.3 exon 46610394 46610510 46610394 ID=MS.gene72010.t1.exon5;Parent=MS.gene72010.t1
chr2.3 CDS 46610394 46610510 46610394 ID=cds.MS.gene72010.t1;Parent=MS.gene72010.t1
Gene Sequence

>MS.gene72010

ATGGATGAAGTAGTGGAAATAGATACCTTAGAGAAGGGTTTATTGGAAGAAAATGAAGAAAACGAAGAAGTGTTATATGCAGCATCGTTTCAAGAAATGGAGAAGAATTTCATCAAGTACCAAACAGTACAGTGGGTACTTTACTCTCTGTTATTGATATTAGCTTGGGGAATTGGGTTACTCATGTTGCTTTATGTACCAGTTAGAAGGTTTATACTTAGAAAAGATATTCGTTCTAGAAGTCTTTACCTTACTCCAAATGCTATTGTTTATAAGGTATTCTTTTCTTCACTTTCCTACTATTTCTTTCAATTTATATTTTTTTATTTTTTTCTGTTGGGAATATTACTGGTATGGATTTGAGAGATTGTTAGTATAAGTTATATGAATTTTTGTTGTTGAAATTGGAAATTTGTTGTGATTATGATAAAATACATTAATATGTATAAGAGGATTTGTTTTGTCTTCTGGGCCTATTGAAGAGGATTGGTTTTGTCATCCAGAAAGTGTTAGCGGCGCAGCTTGTTGCCCGTTTGCCTTCACTTTCTTGATAAATTATTATAAATTATATATAAAAGAATTAAGCTCATTAAAAAGTTAATATGTATAATAAACTATGAATTTGTTATTGGAGCTGGGAGTTTGAACTTTGAGTTGAATGAGTTGAGAAGTTAAAGGGCCTCATGTTTAAATCCTAGTAAAAGATGTTAATATAGTAACATTTAGCGTTCGTGGTAGAACAAACTGGTATATTATTACTGAATATTGGGAACAATCCCCTTTGATTACAAACAAGACAGCACTTCGAGGGTCTGCTTCCCGATGACAAAGGCTCTATTCCTCCCAAATGACAAGATGTTGCCCTCTCTAATCAAAACTCCCAAATGGCATTAAACTTTTAAGGGAGTTTTGTTGCTCATGTGGTTCTATCTGGTTAGAGTGATAGTCTTTCTAGTTGCGCGCAAGATACCTGGTCTATATTCAAAAGGTAACTGCCTTTTATGATACATCACTCACTTTAGACATGATTTTGGGTGGTTTTGGCTTTGTACTGATTTTGATAACTTATGAATGTATTATATTTGCATGTATGGATCTCTTGACATGTAATAAGATCTGTGTTATATCTAGCTCAGGTCACAAGGCCGGTACCGTTTCCATGTTTTGGAGTGCTGCATAAAGAGAAGCATGTCTTATTGCATTCTGTGGCTGATGTCGTGGTTGAACAAGGTGCACTATTTGCTGTTTTCTTCTGTGTTCTTTAAGCTTTTGGACAACCCTTTTTTTATTTTTTTCAAGTACTAGTTTCATGCTATAAGATTTGGTAGATTTTATGCCTTACTTTTATTCTTCCAGCCTCATGTAATTATATAATTATGGCCCTCTGGTTGTAATTCCTAGTATATGATTAATTATATCTGTTCGTATGCTATTTACAATAGTTATGGGGTTTTAATTTCTAGCATTGTTTAAATTGCGACTGTGGTTGCGGTTACGTTGTGAACCTTTATATTGCCGCAACATGTAGGAAAATGAAATCCTTGCTGTCTAAATTGTGGTTTCAATGGCGTCGCGGAAAAATCAATATCCTTTCTATTGTGGCTGCAATTGGGGTTGCAAACCCTAATTTAAAACTATGATTTCTAGTATCTCATTAATTGTACCTGTTCATAGGATACTACTCACAAAGTTGCACCGGTTTTGTAGTTTAATTTCTAGTATCTGATTAATGATACTTGCTCATAGGGTACTTGCAATCCCTTTTCGGTGTATATTCTCTTAGAATTGAAAATGTTGGAGTTAGAAGGCCACCCAGTGACGATGTTAAAATCTTGGGAATTGCAAATCCTAATGCTTTCAAGAAGGTATTTGATTGTGCCTGATCAAATTGTGATTTTCTTTCTGTATTTCTTCATTCACTTTTGAATTGATGATATATGTTAAACTTCTTTTTTCTTTGCCTGGTTTCTTTTTAGGCTGTTATGATGCACCTATCAAACATGAGAAATGAGATTGTTTCAAGACATGTGTCTACATTAGAAGATGGTTCGCATTTGATGGTAAATCATTCGCCAATCCGAGAAGTATTCAATTTTTTCCTCTATATTTTGGTCACTTTTGCTTCTAAGTGGCCAATAATATAAGTCGTTTACTTATCCCGGAAATCTCAAGTTGAGGGTGTTGTCGTGTCGAGTATATTTTTAACTGCTGTTGTTCATGTTGGTTACTTATGATCTTTATCTTCTCGCTCACATTGTTTTGTCATTGTAGATGTCTCCATCCAAGTCATTGAGATATGATTCTACTCATTCTGAGGATCTGCTACTATTGCAGAAGCTGGAGGAAGTTGGAAGCTCTGTTAAGGTAGAAAGTAAACGCTGCATATAG
Protein sequence

>MS.gene72010.t1

MDEVVEIDTLEKGLLEENEENEEVLYAASFQEMEKNFIKYQTVQWVLYSLLLILAWGIGLLMLLYVPVRRFILRKDIRSRSLYLTPNAIVYKVTRPVPFPCFGVLHKEKHVLLHSVADVVVEQGYLQSLFGVYSLRIENVGVRRPPSDDVKILGIANPNAFKKAVMMHLSNMRNEIVSRHVSTLEDGSHLMMSPSKSLRYDSTHSEDLLLLQKLEEVGSSVKVESKRCI