Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72045.t1 | XP_013459955.1 | 94.9 | 216 | 9 | 1 | 1 | 214 | 1 | 216 | 7.60E-103 | 383.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72045.t1 | Q9SX38 | 33.2 | 217 | 127 | 5 | 1 | 210 | 1 | 206 | 1.2e-19 | 98.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72045.t1 | A0A072UX30 | 94.9 | 216 | 9 | 1 | 1 | 214 | 1 | 216 | 5.5e-103 | 383.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054930 | MS.gene72045 | 0.802084 | 6.63E-49 | -1.69E-46 |
| MS.gene060084 | MS.gene72045 | 0.805821 | 1.11E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72045.t1 | MTR_3g056585 | 95.370 | 216 | 8 | 1 | 1 | 214 | 1 | 216 | 9.87e-142 | 418 |
| MS.gene72045.t1 | MTR_1g078190 | 66.820 | 217 | 69 | 2 | 1 | 214 | 1 | 217 | 4.65e-90 | 284 |
| MS.gene72045.t1 | MTR_3g456030 | 65.909 | 220 | 69 | 2 | 1 | 214 | 1 | 220 | 2.96e-89 | 282 |
| MS.gene72045.t1 | MTR_3g056635 | 61.712 | 222 | 77 | 3 | 1 | 214 | 1 | 222 | 9.10e-89 | 273 |
| MS.gene72045.t1 | MTR_3g056590 | 66.667 | 222 | 66 | 3 | 1 | 214 | 1 | 222 | 2.56e-88 | 278 |
| MS.gene72045.t1 | MTR_3g455910 | 65.158 | 221 | 66 | 4 | 1 | 214 | 1 | 217 | 2.76e-85 | 269 |
| MS.gene72045.t1 | MTR_3g055720 | 61.818 | 220 | 78 | 2 | 1 | 214 | 1 | 220 | 1.99e-81 | 260 |
| MS.gene72045.t1 | MTR_3g055830 | 60.369 | 217 | 80 | 2 | 4 | 214 | 1 | 217 | 8.65e-79 | 253 |
| MS.gene72045.t1 | MTR_3g055740 | 62.896 | 221 | 71 | 4 | 1 | 214 | 1 | 217 | 1.34e-77 | 249 |
| MS.gene72045.t1 | MTR_3g055870 | 61.927 | 218 | 72 | 4 | 4 | 214 | 1 | 214 | 7.03e-76 | 245 |
| MS.gene72045.t1 | MTR_3g069210 | 63.636 | 220 | 65 | 4 | 1 | 214 | 1 | 211 | 2.72e-73 | 238 |
| MS.gene72045.t1 | MTR_3g452130 | 55.024 | 209 | 84 | 3 | 12 | 214 | 10 | 214 | 4.47e-73 | 221 |
| MS.gene72045.t1 | MTR_1g078160 | 63.743 | 171 | 59 | 2 | 27 | 194 | 7 | 177 | 8.58e-71 | 213 |
| MS.gene72045.t1 | MTR_3g056630 | 53.604 | 222 | 71 | 4 | 1 | 214 | 1 | 198 | 1.48e-66 | 205 |
| MS.gene72045.t1 | MTR_3g011420 | 52.232 | 224 | 95 | 4 | 1 | 214 | 1 | 222 | 9.44e-66 | 218 |
| MS.gene72045.t1 | MTR_3g011270 | 53.812 | 223 | 92 | 5 | 1 | 214 | 1 | 221 | 1.29e-65 | 218 |
| MS.gene72045.t1 | MTR_3g011390 | 52.232 | 224 | 95 | 4 | 1 | 213 | 1 | 223 | 1.61e-64 | 214 |
| MS.gene72045.t1 | MTR_3g011280 | 52.444 | 225 | 93 | 5 | 1 | 214 | 1 | 222 | 2.68e-64 | 214 |
| MS.gene72045.t1 | MTR_3g011280 | 52.444 | 225 | 93 | 5 | 1 | 214 | 1 | 222 | 4.29e-64 | 213 |
| MS.gene72045.t1 | MTR_3g011300 | 50.446 | 224 | 99 | 4 | 1 | 214 | 1 | 222 | 1.36e-63 | 212 |
| MS.gene72045.t1 | MTR_3g011460 | 50.667 | 225 | 97 | 4 | 1 | 214 | 1 | 222 | 2.14e-63 | 211 |
| MS.gene72045.t1 | MTR_3g011480 | 50.446 | 224 | 99 | 4 | 1 | 214 | 1 | 222 | 5.32e-62 | 207 |
| MS.gene72045.t1 | MTR_0691s0020 | 51.556 | 225 | 95 | 6 | 1 | 214 | 1 | 222 | 1.39e-61 | 206 |
| MS.gene72045.t1 | MTR_3g011360 | 52.752 | 218 | 90 | 4 | 1 | 206 | 1 | 217 | 5.73e-61 | 204 |
| MS.gene72045.t1 | MTR_3g011370 | 50.439 | 228 | 93 | 5 | 1 | 214 | 1 | 222 | 4.68e-60 | 202 |
| MS.gene72045.t1 | MTR_3g012090 | 47.945 | 219 | 108 | 4 | 1 | 213 | 1 | 219 | 9.87e-53 | 182 |
| MS.gene72045.t1 | MTR_3g019340 | 54.167 | 192 | 81 | 5 | 27 | 214 | 5 | 193 | 1.02e-52 | 181 |
| MS.gene72045.t1 | MTR_3g012050 | 45.794 | 214 | 112 | 1 | 1 | 214 | 1 | 210 | 7.30e-50 | 174 |
| MS.gene72045.t1 | MTR_1g016210 | 45.374 | 227 | 107 | 8 | 1 | 214 | 1 | 223 | 4.15e-47 | 166 |
| MS.gene72045.t1 | MTR_3g012240 | 47.032 | 219 | 108 | 5 | 1 | 212 | 48 | 265 | 3.48e-46 | 163 |
| MS.gene72045.t1 | MTR_7g006780 | 49.479 | 192 | 66 | 4 | 4 | 189 | 1 | 167 | 5.53e-45 | 155 |
| MS.gene72045.t1 | MTR_3g056615 | 41.423 | 239 | 102 | 9 | 1 | 214 | 5 | 230 | 1.12e-44 | 150 |
| MS.gene72045.t1 | MTR_3g012060 | 43.182 | 220 | 118 | 4 | 1 | 213 | 1 | 220 | 9.16e-44 | 156 |
| MS.gene72045.t1 | MTR_3g012310 | 43.636 | 220 | 117 | 4 | 1 | 213 | 1 | 220 | 4.67e-43 | 154 |
| MS.gene72045.t1 | MTR_3g055930 | 40.086 | 232 | 121 | 5 | 1 | 214 | 1 | 232 | 1.01e-41 | 150 |
| MS.gene72045.t1 | MTR_3g012270 | 42.795 | 229 | 115 | 5 | 1 | 213 | 1 | 229 | 1.43e-40 | 147 |
| MS.gene72045.t1 | MTR_3g056380 | 40.693 | 231 | 110 | 7 | 1 | 214 | 1 | 221 | 4.68e-40 | 145 |
| MS.gene72045.t1 | MTR_3g056310 | 39.640 | 222 | 120 | 5 | 2 | 212 | 4 | 222 | 9.91e-40 | 145 |
| MS.gene72045.t1 | MTR_3g456060 | 69.072 | 97 | 29 | 1 | 4 | 99 | 1 | 97 | 7.10e-39 | 130 |
| MS.gene72045.t1 | MTR_3g056200 | 41.256 | 223 | 106 | 7 | 6 | 214 | 16 | 227 | 1.61e-38 | 141 |
| MS.gene72045.t1 | MTR_3g056620 | 40.991 | 222 | 106 | 8 | 6 | 212 | 16 | 227 | 4.54e-38 | 140 |
| MS.gene72045.t1 | MTR_3g455860 | 72.043 | 93 | 25 | 1 | 1 | 92 | 1 | 93 | 6.03e-38 | 127 |
| MS.gene72045.t1 | MTR_3g056610 | 40.741 | 216 | 94 | 7 | 23 | 214 | 1 | 206 | 7.81e-38 | 139 |
| MS.gene72045.t1 | MTR_3g056320 | 38.397 | 237 | 116 | 7 | 1 | 214 | 1 | 230 | 4.85e-37 | 137 |
| MS.gene72045.t1 | MTR_3g012250 | 40.611 | 229 | 120 | 5 | 1 | 213 | 1 | 229 | 1.97e-35 | 132 |
| MS.gene72045.t1 | MTR_3g056360 | 38.806 | 201 | 106 | 5 | 21 | 214 | 8 | 198 | 1.36e-33 | 127 |
| MS.gene72045.t1 | MTR_3g056190 | 40.000 | 220 | 111 | 8 | 6 | 212 | 16 | 227 | 2.29e-33 | 126 |
| MS.gene72045.t1 | MTR_3g056410 | 38.693 | 199 | 105 | 5 | 23 | 214 | 1 | 189 | 3.96e-33 | 125 |
| MS.gene72045.t1 | MTR_1g078150 | 70.115 | 87 | 26 | 0 | 1 | 87 | 1 | 87 | 5.42e-33 | 125 |
| MS.gene72045.t1 | MTR_5g027870 | 38.426 | 216 | 117 | 7 | 1 | 211 | 1 | 205 | 1.09e-32 | 124 |
| MS.gene72045.t1 | MTR_5g027910 | 38.009 | 221 | 118 | 6 | 1 | 214 | 1 | 209 | 1.41e-32 | 124 |
| MS.gene72045.t1 | MTR_3g455940 | 59.259 | 108 | 38 | 2 | 113 | 214 | 7 | 114 | 2.27e-32 | 123 |
| MS.gene72045.t1 | MTR_5g027810 | 36.321 | 212 | 127 | 4 | 1 | 211 | 1 | 205 | 2.68e-26 | 106 |
| MS.gene72045.t1 | MTR_3g455900 | 62.500 | 88 | 27 | 2 | 133 | 214 | 12 | 99 | 4.01e-26 | 105 |
| MS.gene72045.t1 | MTR_5g027860 | 38.009 | 221 | 110 | 6 | 1 | 211 | 1 | 204 | 1.17e-25 | 104 |
| MS.gene72045.t1 | MTR_5g027900 | 37.156 | 218 | 113 | 6 | 1 | 211 | 1 | 201 | 1.57e-25 | 103 |
| MS.gene72045.t1 | MTR_3g456070 | 51.818 | 110 | 30 | 4 | 111 | 214 | 1 | 93 | 6.10e-22 | 93.6 |
| MS.gene72045.t1 | MTR_1g078490 | 28.000 | 200 | 130 | 5 | 19 | 213 | 23 | 213 | 4.12e-19 | 85.5 |
| MS.gene72045.t1 | MTR_1g093390 | 37.267 | 161 | 70 | 6 | 27 | 179 | 48 | 185 | 4.30e-19 | 81.6 |
| MS.gene72045.t1 | MTR_4g073840 | 30.631 | 222 | 137 | 6 | 1 | 214 | 1 | 213 | 8.05e-19 | 84.7 |
| MS.gene72045.t1 | MTR_7g015770 | 28.037 | 214 | 135 | 4 | 1 | 210 | 3 | 201 | 1.85e-18 | 83.6 |
| MS.gene72045.t1 | MTR_5g071823 | 27.778 | 216 | 135 | 6 | 1 | 211 | 1 | 200 | 4.05e-18 | 82.8 |
| MS.gene72045.t1 | MTR_5g071850 | 27.778 | 216 | 135 | 6 | 1 | 211 | 1 | 200 | 4.05e-18 | 82.8 |
| MS.gene72045.t1 | MTR_2g038510 | 26.047 | 215 | 151 | 3 | 1 | 212 | 1 | 210 | 6.94e-18 | 82.0 |
| MS.gene72045.t1 | MTR_6g046130 | 28.372 | 215 | 141 | 5 | 1 | 213 | 1 | 204 | 3.02e-17 | 80.1 |
| MS.gene72045.t1 | MTR_0230s0010 | 28.241 | 216 | 140 | 5 | 1 | 213 | 1 | 204 | 3.36e-17 | 80.1 |
| MS.gene72045.t1 | MTR_3g055900 | 28.182 | 220 | 136 | 7 | 1 | 214 | 9 | 212 | 3.42e-17 | 79.7 |
| MS.gene72045.t1 | MTR_6g052760 | 28.972 | 214 | 137 | 5 | 1 | 211 | 1 | 202 | 3.76e-17 | 79.7 |
| MS.gene72045.t1 | MTR_7g406780 | 36.517 | 178 | 72 | 7 | 40 | 211 | 9 | 151 | 7.17e-17 | 77.8 |
| MS.gene72045.t1 | MTR_8g036195 | 25.926 | 216 | 145 | 5 | 1 | 213 | 1 | 204 | 7.45e-17 | 79.0 |
| MS.gene72045.t1 | MTR_6g046620 | 27.907 | 215 | 142 | 5 | 1 | 213 | 1 | 204 | 9.39e-17 | 78.6 |
| MS.gene72045.t1 | MTR_0511s0020 | 28.241 | 216 | 140 | 5 | 1 | 213 | 1 | 204 | 1.60e-16 | 78.2 |
| MS.gene72045.t1 | MTR_0144s0060 | 30.415 | 217 | 134 | 9 | 1 | 213 | 1 | 204 | 3.24e-16 | 77.0 |
| MS.gene72045.t1 | MTR_1g023600 | 27.315 | 216 | 133 | 6 | 1 | 211 | 1 | 197 | 5.07e-16 | 76.6 |
| MS.gene72045.t1 | MTR_6g046570 | 25.463 | 216 | 143 | 6 | 1 | 213 | 1 | 201 | 2.06e-15 | 74.7 |
| MS.gene72045.t1 | MTR_6g052750 | 27.962 | 211 | 133 | 6 | 1 | 206 | 1 | 197 | 2.15e-15 | 72.0 |
| MS.gene72045.t1 | MTR_0133s0030 | 29.032 | 217 | 138 | 7 | 1 | 213 | 1 | 205 | 2.27e-15 | 74.7 |
| MS.gene72045.t1 | MTR_3g055710 | 69.231 | 52 | 16 | 0 | 163 | 214 | 7 | 58 | 2.43e-15 | 74.3 |
| MS.gene72045.t1 | MTR_5g071310 | 26.364 | 220 | 129 | 6 | 1 | 211 | 1 | 196 | 2.53e-15 | 74.7 |
| MS.gene72045.t1 | MTR_3g013700 | 43.689 | 103 | 41 | 2 | 111 | 213 | 1 | 86 | 2.55e-15 | 74.3 |
| MS.gene72045.t1 | MTR_6g046440 | 28.169 | 213 | 137 | 7 | 1 | 210 | 1 | 200 | 2.62e-15 | 74.3 |
| MS.gene72045.t1 | MTR_6g046480 | 27.189 | 217 | 142 | 7 | 1 | 213 | 1 | 205 | 3.16e-15 | 74.3 |
| MS.gene72045.t1 | MTR_4g119195 | 26.667 | 210 | 140 | 5 | 10 | 213 | 14 | 215 | 4.91e-15 | 73.6 |
| MS.gene72045.t1 | MTR_0133s0020 | 28.054 | 221 | 133 | 7 | 1 | 213 | 1 | 203 | 4.95e-15 | 73.6 |
| MS.gene72045.t1 | MTR_0256s0050 | 27.778 | 216 | 140 | 7 | 1 | 213 | 1 | 203 | 5.24e-15 | 73.6 |
| MS.gene72045.t1 | MTR_4g119195 | 26.667 | 210 | 140 | 5 | 10 | 213 | 14 | 215 | 5.42e-15 | 73.6 |
| MS.gene72045.t1 | MTR_3g086070 | 25.926 | 216 | 144 | 6 | 1 | 213 | 1 | 203 | 1.12e-14 | 72.8 |
| MS.gene72045.t1 | MTR_5g071470 | 26.754 | 228 | 122 | 6 | 1 | 211 | 1 | 200 | 1.15e-14 | 72.8 |
| MS.gene72045.t1 | MTR_5g037450 | 26.667 | 225 | 143 | 7 | 1 | 211 | 1 | 217 | 1.28e-14 | 72.4 |
| MS.gene72045.t1 | MTR_7g071940 | 26.512 | 215 | 134 | 6 | 1 | 211 | 1 | 195 | 2.18e-14 | 71.6 |
| MS.gene72045.t1 | MTR_5g071780 | 25.229 | 218 | 138 | 6 | 1 | 211 | 1 | 200 | 3.04e-14 | 71.2 |
| MS.gene72045.t1 | MTR_7g491180 | 25.604 | 207 | 132 | 6 | 19 | 213 | 23 | 219 | 3.96e-14 | 70.9 |
| MS.gene72045.t1 | MTR_7g091190 | 25.604 | 207 | 132 | 6 | 19 | 213 | 23 | 219 | 3.96e-14 | 70.9 |
| MS.gene72045.t1 | MTR_5g071670 | 27.064 | 218 | 129 | 7 | 1 | 211 | 1 | 195 | 4.00e-14 | 71.2 |
| MS.gene72045.t1 | MTR_5g034770 | 25.688 | 218 | 142 | 8 | 1 | 207 | 1 | 209 | 4.18e-14 | 70.9 |
| MS.gene72045.t1 | MTR_5g071800 | 26.244 | 221 | 132 | 6 | 1 | 211 | 1 | 200 | 4.79e-14 | 70.9 |
| MS.gene72045.t1 | MTR_5g072250 | 25.792 | 221 | 133 | 6 | 1 | 211 | 1 | 200 | 6.09e-14 | 70.5 |
| MS.gene72045.t1 | MTR_5g021080 | 30.263 | 228 | 125 | 8 | 1 | 211 | 1 | 211 | 6.97e-14 | 70.5 |
| MS.gene72045.t1 | MTR_5g035300 | 26.697 | 221 | 144 | 5 | 1 | 211 | 1 | 213 | 7.32e-14 | 70.1 |
| MS.gene72045.t1 | MTR_3g023320 | 26.267 | 217 | 143 | 6 | 1 | 213 | 1 | 204 | 9.73e-14 | 70.1 |
| MS.gene72045.t1 | MTR_5g076840 | 26.415 | 212 | 138 | 6 | 10 | 213 | 14 | 215 | 1.20e-13 | 69.7 |
| MS.gene72045.t1 | MTR_7g078300 | 27.500 | 200 | 132 | 6 | 19 | 213 | 23 | 214 | 1.61e-13 | 69.3 |
| MS.gene72045.t1 | MTR_7g091200 | 24.747 | 198 | 131 | 5 | 26 | 213 | 30 | 219 | 1.94e-13 | 68.9 |
| MS.gene72045.t1 | MTR_7g078640 | 27.000 | 200 | 133 | 6 | 19 | 213 | 23 | 214 | 2.46e-13 | 68.6 |
| MS.gene72045.t1 | MTR_5g070960 | 25.792 | 221 | 133 | 5 | 1 | 211 | 1 | 200 | 2.47e-13 | 68.6 |
| MS.gene72045.t1 | MTR_7g491190 | 24.747 | 198 | 131 | 5 | 26 | 213 | 30 | 219 | 2.57e-13 | 68.6 |
| MS.gene72045.t1 | MTR_6g047450 | 28.507 | 221 | 129 | 6 | 1 | 211 | 1 | 202 | 3.99e-13 | 68.2 |
| MS.gene72045.t1 | MTR_6g046930 | 26.267 | 217 | 141 | 7 | 1 | 213 | 1 | 202 | 5.15e-13 | 67.8 |
| MS.gene72045.t1 | MTR_5g071220 | 25.463 | 216 | 140 | 6 | 1 | 211 | 1 | 200 | 9.75e-13 | 67.0 |
| MS.gene72045.t1 | MTR_5g071220 | 25.463 | 216 | 140 | 6 | 1 | 211 | 1 | 200 | 9.92e-13 | 67.0 |
| MS.gene72045.t1 | MTR_7g091550 | 24.638 | 207 | 136 | 5 | 19 | 213 | 25 | 223 | 1.90e-12 | 66.2 |
| MS.gene72045.t1 | MTR_5g035240 | 27.149 | 221 | 142 | 9 | 1 | 211 | 1 | 212 | 2.63e-12 | 65.9 |
| MS.gene72045.t1 | MTR_7g091570 | 25.561 | 223 | 145 | 6 | 3 | 213 | 8 | 221 | 2.64e-12 | 64.7 |
| MS.gene72045.t1 | MTR_7g091140 | 23.923 | 209 | 133 | 5 | 19 | 213 | 23 | 219 | 7.43e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72045.t1 | AT1G50180 | 33.641 | 217 | 126 | 5 | 1 | 210 | 1 | 206 | 1.31e-21 | 92.8 |
| MS.gene72045.t1 | AT5G48620 | 31.250 | 224 | 122 | 7 | 1 | 210 | 1 | 206 | 1.40e-19 | 87.0 |
| MS.gene72045.t1 | AT5G48620 | 31.250 | 224 | 122 | 7 | 1 | 210 | 1 | 206 | 1.40e-19 | 87.0 |
| MS.gene72045.t1 | AT5G48620 | 31.250 | 224 | 122 | 7 | 1 | 210 | 1 | 206 | 1.40e-19 | 87.0 |
| MS.gene72045.t1 | AT5G48620 | 31.250 | 224 | 122 | 7 | 1 | 210 | 1 | 206 | 1.40e-19 | 87.0 |
| MS.gene72045.t1 | AT5G48620 | 31.250 | 224 | 122 | 7 | 1 | 210 | 1 | 206 | 1.40e-19 | 87.0 |
| MS.gene72045.t1 | AT5G48620 | 31.250 | 224 | 122 | 7 | 1 | 210 | 1 | 206 | 1.40e-19 | 87.0 |
| MS.gene72045.t1 | AT3G07040 | 32.301 | 226 | 131 | 7 | 1 | 213 | 1 | 217 | 1.69e-18 | 84.0 |
| MS.gene72045.t1 | AT5G43470 | 31.481 | 216 | 132 | 6 | 1 | 210 | 1 | 206 | 6.27e-18 | 82.0 |
| MS.gene72045.t1 | AT5G43470 | 31.481 | 216 | 132 | 6 | 1 | 210 | 1 | 206 | 6.27e-18 | 82.0 |
| MS.gene72045.t1 | AT5G43470 | 31.481 | 216 | 132 | 6 | 1 | 210 | 1 | 206 | 6.27e-18 | 82.0 |
| MS.gene72045.t1 | AT5G43470 | 31.481 | 216 | 132 | 6 | 1 | 210 | 1 | 206 | 6.27e-18 | 82.0 |
| MS.gene72045.t1 | AT5G35450 | 30.841 | 214 | 134 | 6 | 1 | 210 | 1 | 204 | 1.48e-16 | 78.2 |
| MS.gene72045.t1 | AT5G35450 | 30.841 | 214 | 134 | 6 | 1 | 210 | 1 | 204 | 1.48e-16 | 78.2 |
| MS.gene72045.t1 | AT1G58400 | 27.149 | 221 | 142 | 5 | 1 | 214 | 1 | 209 | 1.49e-16 | 78.2 |
| MS.gene72045.t1 | AT1G58400 | 27.149 | 221 | 142 | 5 | 1 | 214 | 1 | 209 | 1.50e-16 | 78.2 |
| MS.gene72045.t1 | AT1G58400 | 27.149 | 221 | 142 | 5 | 1 | 214 | 1 | 209 | 1.50e-16 | 78.2 |
| MS.gene72045.t1 | AT1G58848 | 27.632 | 228 | 131 | 5 | 1 | 214 | 1 | 208 | 6.27e-16 | 76.3 |
| MS.gene72045.t1 | AT1G59218 | 27.632 | 228 | 131 | 5 | 1 | 214 | 1 | 208 | 6.27e-16 | 76.3 |
| MS.gene72045.t1 | AT1G59218 | 27.632 | 228 | 131 | 5 | 1 | 214 | 1 | 208 | 6.27e-16 | 76.3 |
| MS.gene72045.t1 | AT1G59218 | 27.632 | 228 | 131 | 5 | 1 | 214 | 1 | 208 | 6.27e-16 | 76.3 |
| MS.gene72045.t1 | AT1G58848 | 27.632 | 228 | 131 | 5 | 1 | 214 | 1 | 208 | 6.27e-16 | 76.3 |
| MS.gene72045.t1 | AT1G58410 | 25.352 | 213 | 140 | 5 | 6 | 211 | 4 | 204 | 3.84e-15 | 73.9 |
| MS.gene72045.t1 | AT1G58410 | 25.352 | 213 | 140 | 5 | 6 | 211 | 4 | 204 | 4.01e-15 | 73.9 |
| MS.gene72045.t1 | AT1G58410 | 25.352 | 213 | 140 | 5 | 6 | 211 | 4 | 204 | 4.01e-15 | 73.9 |
| MS.gene72045.t1 | AT1G58410 | 25.352 | 213 | 140 | 5 | 6 | 211 | 4 | 204 | 4.01e-15 | 73.9 |
| MS.gene72045.t1 | AT1G53350 | 30.667 | 225 | 120 | 6 | 1 | 210 | 1 | 204 | 4.17e-15 | 73.9 |
| MS.gene72045.t1 | AT1G58807 | 27.193 | 228 | 132 | 6 | 1 | 214 | 1 | 208 | 2.83e-14 | 71.6 |
| MS.gene72045.t1 | AT1G59124 | 27.193 | 228 | 132 | 6 | 1 | 214 | 1 | 208 | 2.83e-14 | 71.6 |
| MS.gene72045.t1 | AT1G58807 | 27.193 | 228 | 132 | 6 | 1 | 214 | 1 | 208 | 3.01e-14 | 71.6 |
| MS.gene72045.t1 | AT1G59124 | 27.193 | 228 | 132 | 6 | 1 | 214 | 1 | 208 | 3.01e-14 | 71.6 |
| MS.gene72045.t1 | AT3G50950 | 23.853 | 218 | 151 | 7 | 1 | 214 | 1 | 207 | 6.40e-14 | 70.5 |
| MS.gene72045.t1 | AT3G50950 | 23.853 | 218 | 151 | 7 | 1 | 214 | 1 | 207 | 6.40e-14 | 70.5 |
| MS.gene72045.t1 | AT3G46530 | 27.149 | 221 | 143 | 7 | 1 | 214 | 1 | 210 | 6.44e-14 | 70.5 |
| MS.gene72045.t1 | AT1G58390 | 27.803 | 223 | 137 | 6 | 1 | 214 | 1 | 208 | 8.67e-13 | 67.0 |
| MS.gene72045.t1 | AT1G58390 | 27.803 | 223 | 137 | 6 | 1 | 214 | 1 | 208 | 8.67e-13 | 67.0 |
| MS.gene72045.t1 | AT1G58602 | 26.339 | 224 | 132 | 7 | 1 | 211 | 1 | 204 | 1.01e-12 | 67.0 |
| MS.gene72045.t1 | AT1G58602 | 26.339 | 224 | 132 | 7 | 1 | 211 | 1 | 204 | 1.01e-12 | 67.0 |
Find 54 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAGTGAATCTGGATATT+TGG | 0.130592 | 3.1:+42864513 | None:intergenic |
| TGATCAATTGAGCAATCTTA+TGG | 0.291285 | 3.1:+42864494 | None:intergenic |
| GTGGATACCTCTAAGCAAAT+TGG | 0.307803 | 3.1:+42864735 | None:intergenic |
| TTGATTCTTGAGGTTGGATT+TGG | 0.311631 | 3.1:+42864377 | None:intergenic |
| GTGGAATACAAAATGCTAAA+TGG | 0.322266 | 3.1:-42864354 | MS.gene72045:CDS |
| GGCTGAAATGGCTGTGAGTT+TGG | 0.333662 | 3.1:-42864794 | MS.gene72045:CDS |
| TCCGTGAAGGGGTCAAAATA+TGG | 0.334545 | 3.1:-42864621 | MS.gene72045:CDS |
| AAAGAAGCCAATTTGCTTAG+AGG | 0.336733 | 3.1:-42864742 | MS.gene72045:CDS |
| TTGATCCCTCGCCATCGAAT+TGG | 0.339273 | 3.1:-42864466 | MS.gene72045:CDS |
| TGTCGTCTCTGTGGTGGGAA+TGG | 0.384738 | 3.1:-42864227 | MS.gene72045:CDS |
| TGGAGTGAATCTGGATATTT+GGG | 0.387623 | 3.1:+42864514 | None:intergenic |
| AGCAACTGCTTCCACTGTTA+AGG | 0.391384 | 3.1:-42864765 | MS.gene72045:CDS |
| TTGATCGGCTGGTTGGTAAA+AGG | 0.399394 | 3.1:-42864265 | MS.gene72045:CDS |
| GCAATCTTATGGAGTGAATC+TGG | 0.409572 | 3.1:+42864505 | None:intergenic |
| TGTGGTGGGAATGGGAGGGC+AGG | 0.410113 | 3.1:-42864218 | MS.gene72045:CDS |
| GTCGTCTCTGTGGTGGGAAT+GGG | 0.416498 | 3.1:-42864226 | MS.gene72045:CDS |
| GTTGACTGCAATGGCTGAAA+TGG | 0.418683 | 3.1:-42864806 | None:intergenic |
| GTCATATGTTTGTATGATCA+AGG | 0.420689 | 3.1:-42864422 | MS.gene72045:CDS |
| TGATCCCTCGCCATCGAATT+GGG | 0.422138 | 3.1:-42864465 | MS.gene72045:CDS |
| TTCCACTTGATTCTTGAGGT+TGG | 0.422871 | 3.1:+42864371 | None:intergenic |
| GTCTCTGTGGTGGGAATGGG+AGG | 0.424705 | 3.1:-42864223 | MS.gene72045:CDS |
| ATATGGGTGAAGCAGGTGAT+AGG | 0.445652 | 3.1:-42864604 | MS.gene72045:CDS |
| CGGCGTCCTTAAGGAATGCT+TGG | 0.453205 | 3.1:+42864674 | None:intergenic |
| AAGCATCCAAGCATTCCTTA+AGG | 0.483827 | 3.1:-42864680 | MS.gene72045:CDS |
| AAGGAAAGAAGTGAAAGATA+TGG | 0.484511 | 3.1:-42864403 | MS.gene72045:CDS |
| TGTATTCCACTTGATTCTTG+AGG | 0.495527 | 3.1:+42864367 | None:intergenic |
| CTAGAGAAAGATTGATCGGC+TGG | 0.496540 | 3.1:-42864276 | MS.gene72045:CDS |
| CCGTGAAGGGGTCAAAATAT+GGG | 0.504344 | 3.1:-42864620 | MS.gene72045:CDS |
| GCGCACTGTCGTCTCTGTGG+TGG | 0.514796 | 3.1:-42864233 | MS.gene72045:CDS |
| CGCACTGTCGTCTCTGTGGT+GGG | 0.518259 | 3.1:-42864232 | MS.gene72045:CDS |
| GGTCAAAATATGGGTGAAGC+AGG | 0.525135 | 3.1:-42864611 | MS.gene72045:CDS |
| ATGGAGGAAATTGATGTTGT+GGG | 0.530838 | 3.1:-42864310 | MS.gene72045:CDS |
| AAGGAGACAACGTCCGTGAA+GGG | 0.540811 | 3.1:-42864633 | MS.gene72045:CDS |
| GTGGTGGGAATGGGAGGGCA+GGG | 0.546309 | 3.1:-42864217 | MS.gene72045:CDS |
| AGAAAGATTGATCGGCTGGT+TGG | 0.547060 | 3.1:-42864272 | MS.gene72045:CDS |
| TCCTCCATGTGAACCAATCG+AGG | 0.564468 | 3.1:+42864325 | None:intergenic |
| ATCCAACCTCAAGAATCAAG+TGG | 0.575801 | 3.1:-42864373 | MS.gene72045:CDS |
| CATGGAGGAAATTGATGTTG+TGG | 0.577832 | 3.1:-42864311 | MS.gene72045:CDS |
| GAGTCTAGAGAAAGATTGAT+CGG | 0.583252 | 3.1:-42864280 | MS.gene72045:CDS |
| GAAGGAGACAACGTCCGTGA+AGG | 0.596110 | 3.1:-42864634 | MS.gene72045:CDS |
| TCTGACCCAATTCGATGGCG+AGG | 0.598036 | 3.1:+42864460 | None:intergenic |
| TTGGCTTCTTTCCTTAACAG+TGG | 0.600303 | 3.1:+42864754 | None:intergenic |
| CTGACCCAATTCGATGGCGA+GGG | 0.605698 | 3.1:+42864461 | None:intergenic |
| CCCTCGATTGGTTCACATGG+AGG | 0.612781 | 3.1:-42864326 | MS.gene72045:CDS |
| GAATCTCTGACCCAATTCGA+TGG | 0.622625 | 3.1:+42864455 | None:intergenic |
| TGACCCTCGATTGGTTCACA+TGG | 0.623455 | 3.1:-42864329 | MS.gene72045:CDS |
| TCTGGATATTTGGGATGACG+AGG | 0.625130 | 3.1:+42864523 | None:intergenic |
| TAAATGGTATGACCCTCGAT+TGG | 0.626326 | 3.1:-42864338 | MS.gene72045:CDS |
| TGATGTATGCAAATTCCTTG+TGG | 0.626853 | 3.1:+42864716 | None:intergenic |
| TCTCTGTGGTGGGAATGGGA+GGG | 0.627084 | 3.1:-42864222 | MS.gene72045:CDS |
| AGGAGACAACGTCCGTGAAG+GGG | 0.632342 | 3.1:-42864632 | MS.gene72045:CDS |
| CCTCCATGTGAACCAATCGA+GGG | 0.658471 | 3.1:+42864326 | None:intergenic |
| AGAGCGCACTGTCGTCTCTG+TGG | 0.675845 | 3.1:-42864236 | MS.gene72045:CDS |
| TTTGCTTAGAGGTATCCACA+AGG | 0.765159 | 3.1:-42864731 | MS.gene72045:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AAGGAAAGAAGTGAAAGATA+TGG | - | chr3.1:42864570-42864589 | MS.gene72045:CDS | 30.0% | |
| GTCATATGTTTGTATGATCA+AGG | - | chr3.1:42864551-42864570 | MS.gene72045:CDS | 30.0% | |
| GTGGAATACAAAATGCTAAA+TGG | - | chr3.1:42864619-42864638 | MS.gene72045:CDS | 30.0% | |
| TGATCAATTGAGCAATCTTA+TGG | + | chr3.1:42864482-42864501 | None:intergenic | 30.0% | |
| ! | CTTGCTATCAAAAACATTCT+TGG | + | chr3.1:42864796-42864815 | None:intergenic | 30.0% |
| !! | CAAGAATGTTTTTGATAGCA+AGG | - | chr3.1:42864794-42864813 | MS.gene72045:CDS | 30.0% |
| AAAAACATTCTTGGCAAGAG+TGG | + | chr3.1:42864787-42864806 | None:intergenic | 35.0% | |
| ATGGAGGAAATTGATGTTGT+GGG | - | chr3.1:42864663-42864682 | MS.gene72045:CDS | 35.0% | |
| ATGGAGTGAATCTGGATATT+TGG | + | chr3.1:42864463-42864482 | None:intergenic | 35.0% | |
| GAGTCTAGAGAAAGATTGAT+CGG | - | chr3.1:42864693-42864712 | MS.gene72045:CDS | 35.0% | |
| TGATGTATGCAAATTCCTTG+TGG | + | chr3.1:42864260-42864279 | None:intergenic | 35.0% | |
| TGGAGTGAATCTGGATATTT+GGG | + | chr3.1:42864462-42864481 | None:intergenic | 35.0% | |
| TGTATTCCACTTGATTCTTG+AGG | + | chr3.1:42864609-42864628 | None:intergenic | 35.0% | |
| TTGATTCTTGAGGTTGGATT+TGG | + | chr3.1:42864599-42864618 | None:intergenic | 35.0% | |
| ! | AAAGAAGCCAATTTGCTTAG+AGG | - | chr3.1:42864231-42864250 | MS.gene72045:CDS | 35.0% |
| !!! | TTCAACTGCAGCTCTTTTTT+CGG | + | chr3.1:42864322-42864341 | None:intergenic | 35.0% |
| AAGCATCCAAGCATTCCTTA+AGG | - | chr3.1:42864293-42864312 | MS.gene72045:CDS | 40.0% | |
| ATCCAACCTCAAGAATCAAG+TGG | - | chr3.1:42864600-42864619 | MS.gene72045:CDS | 40.0% | |
| CATGGAGGAAATTGATGTTG+TGG | - | chr3.1:42864662-42864681 | MS.gene72045:CDS | 40.0% | |
| GAAAAAAGAGCTGCAGTTGA+AGG | - | chr3.1:42864321-42864340 | MS.gene72045:CDS | 40.0% | |
| GCAATCTTATGGAGTGAATC+TGG | + | chr3.1:42864471-42864490 | None:intergenic | 40.0% | |
| GTGGATACCTCTAAGCAAAT+TGG | + | chr3.1:42864241-42864260 | None:intergenic | 40.0% | |
| TAAATGGTATGACCCTCGAT+TGG | - | chr3.1:42864635-42864654 | MS.gene72045:CDS | 40.0% | |
| TTCCACTTGATTCTTGAGGT+TGG | + | chr3.1:42864605-42864624 | None:intergenic | 40.0% | |
| TTGGCTTCTTTCCTTAACAG+TGG | + | chr3.1:42864222-42864241 | None:intergenic | 40.0% | |
| !! | TTTGCTTAGAGGTATCCACA+AGG | - | chr3.1:42864242-42864261 | MS.gene72045:CDS | 40.0% |
| AGAAAGATTGATCGGCTGGT+TGG | - | chr3.1:42864701-42864720 | MS.gene72045:CDS | 45.0% | |
| AGCAACTGCTTCCACTGTTA+AGG | - | chr3.1:42864208-42864227 | MS.gene72045:CDS | 45.0% | |
| ATATGGGTGAAGCAGGTGAT+AGG | - | chr3.1:42864369-42864388 | MS.gene72045:CDS | 45.0% | |
| CCGTGAAGGGGTCAAAATAT+GGG | - | chr3.1:42864353-42864372 | MS.gene72045:CDS | 45.0% | |
| CTAGAGAAAGATTGATCGGC+TGG | - | chr3.1:42864697-42864716 | MS.gene72045:CDS | 45.0% | |
| GAATCTCTGACCCAATTCGA+TGG | + | chr3.1:42864521-42864540 | None:intergenic | 45.0% | |
| GGTCAAAATATGGGTGAAGC+AGG | - | chr3.1:42864362-42864381 | MS.gene72045:CDS | 45.0% | |
| TCCGTGAAGGGGTCAAAATA+TGG | - | chr3.1:42864352-42864371 | MS.gene72045:CDS | 45.0% | |
| ! | TCTGGATATTTGGGATGACG+AGG | + | chr3.1:42864453-42864472 | None:intergenic | 45.0% |
| !! | TTGATCGGCTGGTTGGTAAA+AGG | - | chr3.1:42864708-42864727 | MS.gene72045:CDS | 45.0% |
| !!! | CCCATATTTTGACCCCTTCA+CGG | + | chr3.1:42864356-42864375 | None:intergenic | 45.0% |
| !!! | CTCTTTTTTCGGCGTCCTTA+AGG | + | chr3.1:42864311-42864330 | None:intergenic | 45.0% |
| AAGGAGACAACGTCCGTGAA+GGG | - | chr3.1:42864340-42864359 | MS.gene72045:CDS | 50.0% | |
| CCTCCATGTGAACCAATCGA+GGG | + | chr3.1:42864650-42864669 | None:intergenic | 50.0% | |
| GGCTGAAATGGCTGTGAGTT+TGG | - | chr3.1:42864179-42864198 | MS.gene72045:CDS | 50.0% | |
| TCCTCCATGTGAACCAATCG+AGG | + | chr3.1:42864651-42864670 | None:intergenic | 50.0% | |
| TGATCCCTCGCCATCGAATT+GGG | - | chr3.1:42864508-42864527 | MS.gene72045:CDS | 50.0% | |
| TTGATCCCTCGCCATCGAAT+TGG | - | chr3.1:42864507-42864526 | MS.gene72045:CDS | 50.0% | |
| ! | TGACCCTCGATTGGTTCACA+TGG | - | chr3.1:42864644-42864663 | MS.gene72045:CDS | 50.0% |
| ! | TTGGGATGACGAGGTTTTCG+TGG | + | chr3.1:42864444-42864463 | None:intergenic | 50.0% |
| AGGAGACAACGTCCGTGAAG+GGG | - | chr3.1:42864341-42864360 | MS.gene72045:CDS | 55.0% | |
| CGGCGTCCTTAAGGAATGCT+TGG | + | chr3.1:42864302-42864321 | None:intergenic | 55.0% | |
| CTGACCCAATTCGATGGCGA+GGG | + | chr3.1:42864515-42864534 | None:intergenic | 55.0% | |
| GAAGGAGACAACGTCCGTGA+AGG | - | chr3.1:42864339-42864358 | MS.gene72045:CDS | 55.0% | |
| TCTGACCCAATTCGATGGCG+AGG | + | chr3.1:42864516-42864535 | None:intergenic | 55.0% | |
| ! | CCCTCGATTGGTTCACATGG+AGG | - | chr3.1:42864647-42864666 | MS.gene72045:CDS | 55.0% |
| ! | GTCGTCTCTGTGGTGGGAAT+GGG | - | chr3.1:42864747-42864766 | MS.gene72045:CDS | 55.0% |
| ! | TCTCTGTGGTGGGAATGGGA+GGG | - | chr3.1:42864751-42864770 | MS.gene72045:CDS | 55.0% |
| ! | TGTCGTCTCTGTGGTGGGAA+TGG | - | chr3.1:42864746-42864765 | MS.gene72045:CDS | 55.0% |
| AGAGCGCACTGTCGTCTCTG+TGG | - | chr3.1:42864737-42864756 | MS.gene72045:CDS | 60.0% | |
| CGCACTGTCGTCTCTGTGGT+GGG | - | chr3.1:42864741-42864760 | MS.gene72045:CDS | 60.0% | |
| ! | GTCTCTGTGGTGGGAATGGG+AGG | - | chr3.1:42864750-42864769 | MS.gene72045:CDS | 60.0% |
| GCGCACTGTCGTCTCTGTGG+TGG | - | chr3.1:42864740-42864759 | MS.gene72045:CDS | 65.0% | |
| ! | GTGGTGGGAATGGGAGGGCA+GGG | - | chr3.1:42864756-42864775 | MS.gene72045:CDS | 65.0% |
| ! | TGTGGTGGGAATGGGAGGGC+AGG | - | chr3.1:42864755-42864774 | MS.gene72045:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 42864177 | 42864818 | 42864177 | ID=MS.gene72045 |
| chr3.1 | mRNA | 42864177 | 42864818 | 42864177 | ID=MS.gene72045.t1;Parent=MS.gene72045 |
| chr3.1 | exon | 42864177 | 42864818 | 42864177 | ID=MS.gene72045.t1.exon1;Parent=MS.gene72045.t1 |
| chr3.1 | CDS | 42864177 | 42864818 | 42864177 | ID=cds.MS.gene72045.t1;Parent=MS.gene72045.t1 |
| Gene Sequence |
| Protein sequence |
