AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene72107

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72107.t1 MTR_4g101990 98.010 201 4 0 13 213 132 332 2.41e-142 400
MS.gene72107.t1 MTR_7g074935 62.264 212 59 4 20 211 122 332 5.28e-67 209
MS.gene72107.t1 MTR_8g036160 53.744 227 76 2 13 211 130 355 5.62e-62 197
MS.gene72107.t1 MTR_1g076710 66.447 152 48 3 13 163 122 271 2.31e-53 174
MS.gene72107.t1 MTR_1g061530 55.844 154 65 3 13 165 129 280 4.06e-51 169
MS.gene72107.t1 MTR_5g011680 60.000 150 54 3 20 165 137 284 1.06e-49 163
MS.gene72107.t1 MTR_5g011610 60.000 150 52 2 25 172 56 199 5.83e-48 160
MS.gene72107.t1 MTR_5g011610 54.717 106 44 1 15 120 202 303 2.68e-27 106
MS.gene72107.t1 MTR_6g061670 60.584 137 50 2 21 157 121 253 4.08e-46 155
MS.gene72107.t1 MTR_6g061670 60.584 137 50 2 21 157 126 258 4.46e-46 155
MS.gene72107.t1 MTR_5g011620 58.170 153 58 1 20 172 110 256 2.83e-44 157
MS.gene72107.t1 MTR_5g010330 52.381 147 65 3 13 159 122 263 3.78e-42 145
MS.gene72107.t1 MTR_8g031100 55.072 138 61 1 17 154 147 283 4.22e-40 140
MS.gene72107.t1 MTR_8g098390 52.113 142 66 2 13 154 154 293 5.67e-40 140
MS.gene72107.t1 MTR_4g098460 60.331 121 46 2 22 142 78 196 2.21e-38 134
MS.gene72107.t1 MTR_7g077120 47.712 153 78 2 13 164 145 296 9.27e-38 134
MS.gene72107.t1 MTR_4g098460 57.937 126 46 3 22 142 78 201 6.09e-36 128
MS.gene72107.t1 MTR_4g055803 50.735 136 61 4 20 150 120 254 1.42e-34 127
MS.gene72107.t1 MTR_4g055813 51.163 129 57 3 25 150 19 144 1.41e-33 122
MS.gene72107.t1 MTR_4g055833 50.735 136 61 4 20 150 117 251 8.08e-33 121
MS.gene72107.t1 MTR_1g079780 52.542 118 51 2 25 141 109 222 4.64e-32 119
MS.gene72107.t1 MTR_7g116320 51.163 129 59 1 20 148 138 262 1.17e-30 115
MS.gene72107.t1 MTR_7g116320 52.101 119 53 1 20 138 138 252 1.78e-28 108
MS.gene72107.t1 MTR_4g055705 43.357 143 78 3 1 140 112 254 5.93e-28 107
MS.gene72107.t1 MTR_6g060670 48.092 131 62 3 20 150 172 296 1.28e-24 98.6
MS.gene72107.t1 MTR_1g038960 47.934 121 58 3 22 141 147 263 2.52e-24 98.6
MS.gene72107.t1 MTR_5g041430 43.548 124 65 3 16 137 102 222 1.53e-23 95.9
MS.gene72107.t1 MTR_5g011600 43.548 124 60 2 77 199 3 117 1.94e-23 90.9
MS.gene72107.t1 MTR_3g023560 41.985 131 66 4 17 141 51 177 3.53e-21 88.6
MS.gene72107.t1 MTR_5g014360 44.628 121 62 3 22 141 187 303 4.60e-21 90.1
MS.gene72107.t1 MTR_3g068035 43.548 124 65 2 28 151 109 227 2.90e-20 87.0
MS.gene72107.t1 MTR_3g100470 38.400 125 75 2 25 148 101 224 6.28e-20 85.9
MS.gene72107.t1 MTR_5g066020 39.200 125 71 3 26 148 81 202 7.40e-19 82.4
MS.gene72107.t1 MTR_5g013390 40.496 121 67 3 22 141 145 261 7.45e-19 83.6
MS.gene72107.t1 MTR_1g038990 42.400 125 66 4 18 141 124 243 1.10e-18 82.8
MS.gene72107.t1 MTR_3g116100 43.363 113 59 3 36 148 154 261 1.57e-18 82.4
MS.gene72107.t1 MTR_5g091630 37.162 148 72 2 28 158 77 220 1.03e-16 76.6
MS.gene72107.t1 MTR_4g098450 43.860 114 60 1 28 141 106 215 1.09e-16 77.0
MS.gene72107.t1 MTR_1g044155 41.129 124 68 2 28 151 156 274 2.23e-16 77.0
MS.gene72107.t1 MTR_7g080980 45.614 114 58 1 28 141 87 196 2.93e-16 75.5
MS.gene72107.t1 MTR_5g011700 43.925 107 55 3 36 141 10 112 3.42e-16 73.9
MS.gene72107.t1 MTR_1g073860 42.105 114 62 1 28 141 124 233 1.07e-15 74.7
MS.gene72107.t1 MTR_5g011520 42.105 114 62 1 28 141 130 239 1.04e-14 72.0
MS.gene72107.t1 MTR_8g036060 43.860 114 60 1 28 141 116 225 2.04e-14 70.9
MS.gene72107.t1 MTR_1g079810 40.351 114 64 1 28 141 104 213 1.17e-13 68.6
MS.gene72107.t1 MTR_5g080580 39.024 123 70 2 29 151 120 237 1.27e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72107.t1 AT4G12080 70.792 202 51 6 13 210 158 355 1.31e-89 268
MS.gene72107.t1 AT4G22770 61.307 199 73 3 13 210 138 333 1.71e-65 205
MS.gene72107.t1 AT4G22770 61.307 199 73 3 13 210 138 333 1.71e-65 205
MS.gene72107.t1 AT4G25320 72.868 129 34 1 21 149 162 289 1.74e-60 194
MS.gene72107.t1 AT5G51590 75.000 124 30 1 21 144 174 296 4.10e-57 186
MS.gene72107.t1 AT5G62260 66.667 138 41 2 19 152 154 290 2.21e-56 184
MS.gene72107.t1 AT5G62260 66.667 138 41 2 19 152 154 290 2.21e-56 184
MS.gene72107.t1 AT4G00200 76.866 134 29 2 23 155 121 253 5.24e-56 181
MS.gene72107.t1 AT4G00200 76.866 134 29 2 23 155 121 253 5.24e-56 181
MS.gene72107.t1 AT5G62260 66.935 124 40 1 19 142 154 276 1.85e-52 171
MS.gene72107.t1 AT2G33620 56.364 165 64 3 20 184 158 314 4.56e-50 166
MS.gene72107.t1 AT2G33620 56.364 165 64 3 20 184 158 314 4.56e-50 166
MS.gene72107.t1 AT2G33620 56.364 165 64 3 20 184 158 314 4.56e-50 166
MS.gene72107.t1 AT2G33620 56.364 165 64 3 20 184 158 314 4.56e-50 166
MS.gene72107.t1 AT2G45850 58.594 128 52 1 15 142 152 278 7.93e-45 152
MS.gene72107.t1 AT2G45850 58.594 128 52 1 15 142 152 278 7.93e-45 152
MS.gene72107.t1 AT1G63470 56.818 132 55 2 13 144 165 294 2.15e-43 149
MS.gene72107.t1 AT1G63480 53.147 143 65 2 13 155 142 282 1.71e-42 147
MS.gene72107.t1 AT1G63480 53.147 143 65 2 13 155 142 282 1.71e-42 147
MS.gene72107.t1 AT1G63480 53.147 143 65 2 13 155 142 282 1.71e-42 147
MS.gene72107.t1 AT1G63480 53.147 143 65 2 13 155 142 282 1.71e-42 147
MS.gene72107.t1 AT1G63480 53.147 143 65 2 13 155 142 282 1.71e-42 147
MS.gene72107.t1 AT1G63480 53.147 143 65 2 13 155 148 288 2.21e-42 146
MS.gene72107.t1 AT1G63480 53.147 143 65 2 13 155 148 288 2.21e-42 146
MS.gene72107.t1 AT2G45850 58.197 122 50 1 15 136 152 272 1.44e-41 142
MS.gene72107.t1 AT4G17950 49.660 147 71 2 22 166 218 363 1.64e-39 140
MS.gene72107.t1 AT3G61310 56.923 130 55 1 13 142 152 280 1.77e-39 139
MS.gene72107.t1 AT3G04590 50.000 122 57 1 21 142 167 284 3.43e-36 129
MS.gene72107.t1 AT3G04590 50.000 122 57 1 21 142 167 284 4.26e-35 128
MS.gene72107.t1 AT5G46640 55.725 131 54 2 22 152 177 303 7.01e-33 122
MS.gene72107.t1 AT2G36560 42.975 121 68 1 22 141 102 222 8.46e-26 104
MS.gene72107.t1 AT3G60870 41.026 117 63 2 25 141 86 196 5.17e-19 83.2
MS.gene72107.t1 AT5G49700 36.765 136 82 3 25 156 83 218 1.12e-18 82.4
MS.gene72107.t1 AT2G42940 41.667 132 69 2 11 142 70 193 2.85e-17 78.2
MS.gene72107.t1 AT1G14490 38.235 136 76 3 26 153 31 166 3.35e-17 77.0
MS.gene72107.t1 AT1G14490 38.235 136 76 3 26 153 50 185 4.14e-17 77.0
MS.gene72107.t1 AT4G17800 42.982 114 61 1 28 141 112 221 2.30e-15 73.6
MS.gene72107.t1 AT5G28590 41.322 121 46 3 21 141 26 121 3.06e-15 72.0
MS.gene72107.t1 AT4G14465 39.231 130 74 2 28 157 97 221 4.01e-15 72.8
MS.gene72107.t1 AT2G35270 38.462 130 75 2 28 157 108 232 5.48e-15 72.4
MS.gene72107.t1 AT3G55560 38.168 131 74 2 11 141 105 228 6.91e-15 72.4
MS.gene72107.t1 AT3G04570 39.344 122 62 2 28 141 110 227 7.32e-14 69.3
MS.gene72107.t1 AT1G76500 36.585 123 65 2 28 141 102 220 2.30e-13 67.8
MS.gene72107.t1 AT4G22810 40.171 117 63 2 28 141 135 247 1.08e-11 63.2
MS.gene72107.t1 AT2G45430 40.678 118 62 2 28 141 119 232 1.44e-11 62.8
MS.gene72107.t1 AT4G12050 39.130 115 65 2 28 141 148 258 8.87e-11 60.8

Find 60 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCGTCAGCCCGATTCTTC+TGG 0.153062 8.1:-21709299 MS.gene72107:CDS
ACATCATGCTTCTGATTTCT+TGG 0.217240 8.1:+21708458 None:intergenic
TTTGAAATTCTGTCTTTATC+TGG 0.274522 8.1:-21709072 MS.gene72107:CDS
TTCGTCAGCCCGATTCTTCT+GGG 0.316075 8.1:-21709298 MS.gene72107:CDS
GATATTAATGTGTCTCTTCC+TGG 0.316878 8.1:-21708296 MS.gene72107:CDS
CTTCCTTCCGTGGAGATAAT+TGG 0.333200 8.1:-21708361 MS.gene72107:CDS
GTTCCTCCTCCACTTTCATT+TGG 0.347793 8.1:+21709039 None:intergenic
AGGCGGCATGAGTGTGTCTT+TGG 0.382271 8.1:-21709004 MS.gene72107:CDS
CGGAGGAGTAGCTGGTTTGT+TGG 0.386323 8.1:-21708956 MS.gene72107:CDS
AGAAAATGAAATAACCTTCA+TGG 0.401967 8.1:+21709382 None:intergenic
GAATGGGTCCCTTGCTCTGT+TGG 0.411486 8.1:-21709719 MS.gene72107:CDS
TTATCCTTTGCATCCGATGC+TGG 0.421865 8.1:+21708329 None:intergenic
GGAGGAACACGAAGCAGATC+AGG 0.444348 8.1:-21709024 MS.gene72107:CDS
GTTGTTGGCGGAGGAGTAGC+TGG 0.461135 8.1:-21708964 MS.gene72107:CDS
GTATGCATTCTTTCAGCAAA+TGG 0.463040 8.1:-21709341 MS.gene72107:CDS
AGTCCTGATGGACGTGTTGT+TGG 0.477746 8.1:-21708979 MS.gene72107:CDS
TTCTTGGCTTCTGCTCATGT+TGG 0.484881 8.1:+21708474 None:intergenic
CCGCCAACAACACGTCCATC+AGG 0.492937 8.1:+21708976 None:intergenic
GTAGGGATGGGAACAACAGC+AGG 0.496848 8.1:+21708416 None:intergenic
CACATCATCACTGTTAATGC+TGG 0.504861 8.1:-21709680 MS.gene72107:CDS
GATAGAATAAATACCTGCAC+TGG 0.507918 8.1:+21708922 None:intergenic
GAAGTTACTGATGATAGAAT+AGG 0.508118 8.1:+21708380 None:intergenic
TACTGGATCAAGAGTAGGGA+TGG 0.511973 8.1:+21708403 None:intergenic
TCCTTATGAAATTAGCCTCC+AGG 0.516288 8.1:+21708278 None:intergenic
ATGTTAGGATGTTACCATGA+AGG 0.517184 8.1:-21709396 MS.gene72107:intron
CTTACTTAGAATTATAGTGT+TGG 0.517478 8.1:+21710810 None:intergenic
ACTGATGATAGAATAGGTAC+TGG 0.519373 8.1:+21708386 None:intergenic
TCGTCAGCCCGATTCTTCTG+GGG 0.541650 8.1:-21709297 MS.gene72107:CDS
CAGCATTAACAGTGATGATG+TGG 0.544475 8.1:+21709681 None:intergenic
AGGAGTAGCTGGTTTGTTGG+TGG 0.545177 8.1:-21708953 MS.gene72107:CDS
ATAGGTACTGGATCAAGAGT+AGG 0.547053 8.1:+21708398 None:intergenic
CCTGATGGACGTGTTGTTGG+CGG 0.547329 8.1:-21708976 MS.gene72107:CDS
GGTGGCTGCAAGTCCAGTGC+AGG 0.550883 8.1:-21708935 MS.gene72107:intron
ATGCCAAATGAAAGTGGAGG+AGG 0.551611 8.1:-21709042 MS.gene72107:CDS
GTGTCTTTGGCAAGTCCTGA+TGG 0.556787 8.1:-21708991 MS.gene72107:CDS
TCGTTCATGCCAAATGAAAG+TGG 0.559940 8.1:-21709048 MS.gene72107:CDS
AAATTTGAACCAACAGAGCA+AGG 0.567744 8.1:+21709710 None:intergenic
TAGGTACTGGATCAAGAGTA+GGG 0.580504 8.1:+21708399 None:intergenic
CGTCAGCCCGATTCTTCTGG+GGG 0.586127 8.1:-21709296 MS.gene72107:CDS
GACACATTAATATCAGCAGC+GGG 0.589557 8.1:+21708305 None:intergenic
CATCACTGTTAATGCTGGAG+AGG 0.596487 8.1:-21709675 MS.gene72107:intron
AATTTGAACCAACAGAGCAA+GGG 0.597677 8.1:+21709711 None:intergenic
TTGGTCTGCTGTGCCAGCAT+CGG 0.597910 8.1:-21708342 MS.gene72107:CDS
GATGGACGTGTTGTTGGCGG+AGG 0.605100 8.1:-21708973 MS.gene72107:CDS
TGTGCCAGCATCGGATGCAA+AGG 0.609579 8.1:-21708333 MS.gene72107:CDS
TCATCAGTAACTTCCTTCCG+TGG 0.610671 8.1:-21708371 MS.gene72107:CDS
GAAAGAATGCATACCGCTCG+AGG 0.613852 8.1:+21709350 None:intergenic
TGTATCTACCAGGTAGTGGT+TGG 0.624215 8.1:-21708515 MS.gene72107:intron
AGACCAATTATCTCCACGGA+AGG 0.635192 8.1:+21708358 None:intergenic
TTCTCAGCAAGGACCTCGAG+CGG 0.641808 8.1:-21709363 MS.gene72107:CDS
AGCATTAACAGTGATGATGT+GGG 0.643782 8.1:+21709682 None:intergenic
ACTGGATCAAGAGTAGGGAT+GGG 0.644029 8.1:+21708404 None:intergenic
CAGCAGACCAATTATCTCCA+CGG 0.646524 8.1:+21708354 None:intergenic
AGACACATTAATATCAGCAG+CGG 0.659162 8.1:+21708304 None:intergenic
AACAACAGCAGGAGATGACA+CGG 0.660123 8.1:+21708427 None:intergenic
GGAACACGAAGCAGATCAGG+CGG 0.674892 8.1:-21709021 MS.gene72107:CDS
AAGAAATCAGAAGCATGATG+TGG 0.682976 8.1:-21708456 MS.gene72107:CDS
ATTAATGTGTCTCTTCCTGG+AGG 0.686956 8.1:-21708293 MS.gene72107:CDS
TTCATGCCAAATGAAAGTGG+AGG 0.721594 8.1:-21709045 MS.gene72107:CDS
GCATTAACAGTGATGATGTG+GGG 0.743775 8.1:+21709683 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTCAAATTCTTAATT+TGG - chr8.1:21709286-21709305 MS.gene72107:CDS 10.0%
!! AATTAAAAGTTAAACAAAAA+GGG + chr8.1:21708873-21708892 None:intergenic 10.0%
!!! TCTATTTTATATTTTACTAA+TGG - chr8.1:21708615-21708634 MS.gene72107:intron 10.0%
!! GAATTAAAAGTTAAACAAAA+AGG + chr8.1:21708874-21708893 None:intergenic 15.0%
!!! TGTTAACATTTACATTTTTT+AGG - chr8.1:21709378-21709397 MS.gene72107:CDS 15.0%
!!! TTTGTAATTCTCTAAAAATT+TGG - chr8.1:21708980-21708999 MS.gene72107:CDS 15.0%
!! AATGAAGTGATGATAAAATT+AGG - chr8.1:21709555-21709574 MS.gene72107:intron 20.0%
!! AATTAACTCAAAACAATGTA+TGG + chr8.1:21708837-21708856 None:intergenic 20.0%
!! ACTATTTCAATATCTTAGTT+TGG - chr8.1:21708531-21708550 MS.gene72107:intron 20.0%
!! ATATGTAAAAGCAGAAATTT+GGG + chr8.1:21708937-21708956 None:intergenic 20.0%
!! ATGAAGTGATGATAAAATTA+GGG - chr8.1:21709556-21709575 MS.gene72107:intron 20.0%
!! ATTGAAAATGATAAAAGTCT+CGG + chr8.1:21709343-21709362 None:intergenic 20.0%
!!! ATTTACATTTTTTAGGTGAA+TGG - chr8.1:21709385-21709404 MS.gene72107:CDS 20.0%
!!! GCATTTAGTTTCATATTAAA+TGG - chr8.1:21709073-21709092 MS.gene72107:CDS 20.0%
!!! TTGAATGAACCTTTTTAATT+TGG - chr8.1:21710286-21710305 MS.gene72107:intron 20.0%
!!! TTTACATTTTTTAGGTGAAT+GGG - chr8.1:21709386-21709405 MS.gene72107:CDS 20.0%
! AGAAAATGAAATAACCTTCA+TGG + chr8.1:21709742-21709761 None:intergenic 25.0%
! ATAAACAGAATAAAAGTGAG+AGG - chr8.1:21709586-21709605 MS.gene72107:intron 25.0%
! CATATGTAAAAGCAGAAATT+TGG + chr8.1:21708938-21708957 None:intergenic 25.0%
! CGTCATTCATTGAAAATTAT+AGG + chr8.1:21708719-21708738 None:intergenic 25.0%
! CTTACTTAGAATTATAGTGT+TGG + chr8.1:21708314-21708333 None:intergenic 25.0%
! TAAACAGAATAAAAGTGAGA+GGG - chr8.1:21709587-21709606 MS.gene72107:intron 25.0%
! TAAGAGTTATCTTTCTCAAA+TGG + chr8.1:21710393-21710412 None:intergenic 25.0%
! TATAGAAGAGAACTTTCATT+TGG - chr8.1:21709902-21709921 MS.gene72107:intron 25.0%
! TCTATGCTGTCTTATATATT+AGG - chr8.1:21709156-21709175 MS.gene72107:intron 25.0%
! TCTTAGAATCTTATTCTCTT+AGG - chr8.1:21709225-21709244 MS.gene72107:intron 25.0%
!! ACTCATTTGTTGAGAATTTA+TGG - chr8.1:21708413-21708432 MS.gene72107:CDS 25.0%
!! TTTGAAATTCTGTCTTTATC+TGG - chr8.1:21710049-21710068 MS.gene72107:intron 25.0%
!!! AAGCTTCTAAATTTGCTAAT+TGG - chr8.1:21708898-21708917 MS.gene72107:intron 25.0%
!!! ACAAAGCTAAAGTTTTAAGT+TGG + chr8.1:21708965-21708984 None:intergenic 25.0%
!!! TTATAAGGCGTCTATAATTT+TGG + chr8.1:21709312-21709331 None:intergenic 25.0%
!!! TTTTTAATTCCCCAAATAAC+AGG + chr8.1:21709507-21709526 None:intergenic 25.0%
ACAAAATTGCTGACAATCAT+CGG + chr8.1:21709695-21709714 None:intergenic 30.0%
AGGTATTTATTCTATCCGTA+AGG - chr8.1:21710206-21710225 MS.gene72107:intron 30.0%
ATTTCAAACATGTATCTACC+AGG - chr8.1:21710596-21710615 MS.gene72107:intron 30.0%
ATTTGCAAAATTCTCCCTTA+CGG + chr8.1:21710224-21710243 None:intergenic 30.0%
GAAAGTTCTCTTCTATAAGA+TGG + chr8.1:21709899-21709918 None:intergenic 30.0%
GAAGTTACTGATGATAGAAT+AGG + chr8.1:21710744-21710763 None:intergenic 30.0%
GAGGGTAAATATCTTATATC+AGG + chr8.1:21709112-21709131 None:intergenic 30.0%
GGTATTTATTCTATCCGTAA+GGG - chr8.1:21710207-21710226 MS.gene72107:intron 30.0%
GTAGATCATTAAATGCATTG+TGG + chr8.1:21709930-21709949 None:intergenic 30.0%
TAGTAAGAACTTACTGACAT+AGG + chr8.1:21708383-21708402 None:intergenic 30.0%
TATCTTATATCAGGTAGTCA+AGG + chr8.1:21709103-21709122 None:intergenic 30.0%
TATGCTGTAATCCTGTTATT+TGG - chr8.1:21709493-21709512 MS.gene72107:intron 30.0%
TGAATCACGCCAAATTAAAA+AGG + chr8.1:21710298-21710317 None:intergenic 30.0%
TTATAGCAACATGAATAAGC+TGG - chr8.1:21710524-21710543 MS.gene72107:intron 30.0%
TTTGTGTGTATGGTTATGTT+AGG - chr8.1:21709710-21709729 MS.gene72107:CDS 30.0%
! AAAAACTGTGTACTGAGTTT+TGG - chr8.1:21708573-21708592 MS.gene72107:intron 30.0%
! ATGCTGTAATCCTGTTATTT+GGG - chr8.1:21709494-21709513 MS.gene72107:intron 30.0%
! GGTAGATACATGTTTGAAAT+TGG + chr8.1:21710596-21710615 None:intergenic 30.0%
! TCAGTACACAGTTTTTAACA+TGG + chr8.1:21708569-21708588 None:intergenic 30.0%
! TGATATAAAGCATCTTGAGA+TGG - chr8.1:21709186-21709205 MS.gene72107:intron 30.0%
!! GTTATTTCATTTTCTCAGCA+AGG - chr8.1:21709747-21709766 MS.gene72107:intron 30.0%
!!! ACTTCTTTTTCAGTGATAAC+TGG - chr8.1:21709657-21709676 MS.gene72107:intron 30.0%
AAATTTGAACCAACAGAGCA+AGG + chr8.1:21709414-21709433 None:intergenic 35.0%
AATTTGAACCAACAGAGCAA+GGG + chr8.1:21709413-21709432 None:intergenic 35.0%
ACATCATGCTTCTGATTTCT+TGG + chr8.1:21710666-21710685 None:intergenic 35.0%
ACTGATGATAGAATAGGTAC+TGG + chr8.1:21710738-21710757 None:intergenic 35.0%
AGACACATTAATATCAGCAG+CGG + chr8.1:21710820-21710839 None:intergenic 35.0%
ATCCCACTATATGCTCAAAA+AGG + chr8.1:21709979-21709998 None:intergenic 35.0%
ATGTTAGGATGTTACCATGA+AGG - chr8.1:21709725-21709744 MS.gene72107:intron 35.0%
GAAATGGAGTTGTCATTGTA+AGG + chr8.1:21710475-21710494 None:intergenic 35.0%
GAATGTTTGTTCGCTAGAAA+TGG + chr8.1:21710491-21710510 None:intergenic 35.0%
GATACAATACACATCCGATA+CGG + chr8.1:21708747-21708766 None:intergenic 35.0%
GATAGAATAAATACCTGCAC+TGG + chr8.1:21710202-21710221 None:intergenic 35.0%
GATATTAATGTGTCTCTTCC+TGG - chr8.1:21710825-21710844 MS.gene72107:CDS 35.0%
GTATGCATTCTTTCAGCAAA+TGG - chr8.1:21709780-21709799 MS.gene72107:intron 35.0%
GTTTCTTGTCTGTGATTCAT+AGG - chr8.1:21708775-21708794 MS.gene72107:intron 35.0%
TCTAGCGAACAAACATTCAA+TGG - chr8.1:21710493-21710512 MS.gene72107:intron 35.0%
! AAGAAATCAGAAGCATGATG+TGG - chr8.1:21710665-21710684 MS.gene72107:intron 35.0%
! AAGATGATAATGCTCCTCTT+TGG - chr8.1:21708356-21708375 MS.gene72107:CDS 35.0%
! AGATGATAATGCTCCTCTTT+GGG - chr8.1:21708357-21708376 MS.gene72107:CDS 35.0%
! AGCATTAACAGTGATGATGT+GGG + chr8.1:21709442-21709461 None:intergenic 35.0%
! TGCTGTAATCCTGTTATTTG+GGG - chr8.1:21709495-21709514 MS.gene72107:intron 35.0%
! TGTCAGCAATTTTGTGTGTA+TGG - chr8.1:21709700-21709719 MS.gene72107:CDS 35.0%
! TTAATTTGGCGTGATTCAAG+TGG - chr8.1:21710300-21710319 MS.gene72107:intron 35.0%
!! TGCCTTTTTGAGCATATAGT+GGG - chr8.1:21709974-21709993 MS.gene72107:intron 35.0%
!! TTTTGAGCATATAGTGGGAT+TGG - chr8.1:21709979-21709998 MS.gene72107:intron 35.0%
AACATGTATCTACCAGGTAG+TGG - chr8.1:21710602-21710621 MS.gene72107:intron 40.0%
AGTGATCACACAGATATGAC+AGG + chr8.1:21709636-21709655 None:intergenic 40.0%
ATTAATGTGTCTCTTCCTGG+AGG - chr8.1:21710828-21710847 MS.gene72107:CDS 40.0%
CACATCATCACTGTTAATGC+TGG - chr8.1:21709441-21709460 MS.gene72107:intron 40.0%
GACACATTAATATCAGCAGC+GGG + chr8.1:21710819-21710838 None:intergenic 40.0%
GTCTCGGCGTTTCAATTATA+AGG + chr8.1:21709327-21709346 None:intergenic 40.0%
GTTTGAGTCTCTTAAGCATG+TGG - chr8.1:21710329-21710348 MS.gene72107:intron 40.0%
TAAAACTACCAACCACTACC+TGG + chr8.1:21710617-21710636 None:intergenic 40.0%
TCGTTCATGCCAAATGAAAG+TGG - chr8.1:21710073-21710092 MS.gene72107:intron 40.0%
TTCATGCCAAATGAAAGTGG+AGG - chr8.1:21710076-21710095 MS.gene72107:intron 40.0%
! CAGCATTAACAGTGATGATG+TGG + chr8.1:21709443-21709462 None:intergenic 40.0%
! GCATTAACAGTGATGATGTG+GGG + chr8.1:21709441-21709460 None:intergenic 40.0%
!! ACTTATCTCGGTGTTTCTAC+AGG - chr8.1:21710021-21710040 MS.gene72107:intron 40.0%
!! ATAGGTACTGGATCAAGAGT+AGG + chr8.1:21710726-21710745 None:intergenic 40.0%
!! CTTATCTCGGTGTTTCTACA+GGG - chr8.1:21710022-21710041 MS.gene72107:intron 40.0%
!! GTGCCTTTTTGAGCATATAG+TGG - chr8.1:21709973-21709992 MS.gene72107:intron 40.0%
!! TAGGTACTGGATCAAGAGTA+GGG + chr8.1:21710725-21710744 None:intergenic 40.0%
!!! GGTAGTGGTTGGTAGTTTTA+TGG - chr8.1:21710617-21710636 MS.gene72107:intron 40.0%
AACAACAGCAGGAGATGACA+CGG + chr8.1:21710697-21710716 None:intergenic 45.0%
ACTGGATCAAGAGTAGGGAT+GGG + chr8.1:21710720-21710739 None:intergenic 45.0%
AGACCAATTATCTCCACGGA+AGG + chr8.1:21710766-21710785 None:intergenic 45.0%
ATGCCAAATGAAAGTGGAGG+AGG - chr8.1:21710079-21710098 MS.gene72107:intron 45.0%
CAGCAGACCAATTATCTCCA+CGG + chr8.1:21710770-21710789 None:intergenic 45.0%
CATCACTGTTAATGCTGGAG+AGG - chr8.1:21709446-21709465 MS.gene72107:intron 45.0%
CTGAGTTGCATGCAATCTAC+CGG - chr8.1:21708480-21708499 MS.gene72107:CDS 45.0%
CTTCCTTCCGTGGAGATAAT+TGG - chr8.1:21710760-21710779 MS.gene72107:intron 45.0%
GCACGCACAGTTACTTATCT+CGG - chr8.1:21710009-21710028 MS.gene72107:intron 45.0%
GTCTCTTAAGCATGTGGTCA+TGG - chr8.1:21710335-21710354 MS.gene72107:intron 45.0%
GTTCCTCCTCCACTTTCATT+TGG + chr8.1:21710085-21710104 None:intergenic 45.0%
TACTGGATCAAGAGTAGGGA+TGG + chr8.1:21710721-21710740 None:intergenic 45.0%
TCATCAGTAACTTCCTTCCG+TGG - chr8.1:21710750-21710769 MS.gene72107:intron 45.0%
TGAATGACGAATCGCCGTAT+CGG - chr8.1:21708730-21708749 MS.gene72107:intron 45.0%
TTACTGACATAGGCCCAAAG+AGG + chr8.1:21708373-21708392 None:intergenic 45.0%
TTATCCTTTGCATCCGATGC+TGG + chr8.1:21710795-21710814 None:intergenic 45.0%
TTCTTGGCTTCTGCTCATGT+TGG + chr8.1:21710650-21710669 None:intergenic 45.0%
TTTGGCGTGATTCAAGTGGT+CGG - chr8.1:21710304-21710323 MS.gene72107:intron 45.0%
! TGTATCTACCAGGTAGTGGT+TGG - chr8.1:21710606-21710625 MS.gene72107:intron 45.0%
!!! GTGGTTGGTAGTTTTATGGC+AGG - chr8.1:21710621-21710640 MS.gene72107:intron 45.0%
AATGTGCCCCCAGAAGAATC+GGG + chr8.1:21709834-21709853 None:intergenic 50.0%
AGTGCAGCAGCAATCTGAGA+GGG + chr8.1:21709130-21709149 None:intergenic 50.0%
ATCTCCTCCTTCACCAACAC+CGG + chr8.1:21708502-21708521 None:intergenic 50.0%
CAATGTGCCCCCAGAAGAAT+CGG + chr8.1:21709835-21709854 None:intergenic 50.0%
GAAAGAATGCATACCGCTCG+AGG + chr8.1:21709774-21709793 None:intergenic 50.0%
GTGTCTTTGGCAAGTCCTGA+TGG - chr8.1:21710130-21710149 MS.gene72107:intron 50.0%
TGCATGCAATCTACCGGTGT+TGG - chr8.1:21708486-21708505 MS.gene72107:CDS 50.0%
TTCGTCAGCCCGATTCTTCT+GGG - chr8.1:21709823-21709842 MS.gene72107:intron 50.0%
! AGTCCTGATGGACGTGTTGT+TGG - chr8.1:21710142-21710161 MS.gene72107:intron 50.0%
! TGGGGGCACATTGACATATG+AGG - chr8.1:21709842-21709861 MS.gene72107:intron 50.0%
!! AGGAGTAGCTGGTTTGTTGG+TGG - chr8.1:21710168-21710187 MS.gene72107:intron 50.0%
!! CAATCTACCGGTGTTGGTGA+AGG - chr8.1:21708492-21708511 MS.gene72107:CDS 50.0%
AGGCGGCATGAGTGTGTCTT+TGG - chr8.1:21710117-21710136 MS.gene72107:intron 55.0%
CAGTGCAGCAGCAATCTGAG+AGG + chr8.1:21709131-21709150 None:intergenic 55.0%
CTTCGTCAGCCCGATTCTTC+TGG - chr8.1:21709822-21709841 MS.gene72107:intron 55.0%
GAATGGGTCCCTTGCTCTGT+TGG - chr8.1:21709402-21709421 MS.gene72107:intron 55.0%
GGAACACGAAGCAGATCAGG+CGG - chr8.1:21710100-21710119 MS.gene72107:intron 55.0%
GGAGGAACACGAAGCAGATC+AGG - chr8.1:21710097-21710116 MS.gene72107:intron 55.0%
GTAGGGATGGGAACAACAGC+AGG + chr8.1:21710708-21710727 None:intergenic 55.0%
TCGTCAGCCCGATTCTTCTG+GGG - chr8.1:21709824-21709843 MS.gene72107:intron 55.0%
TTCTCAGCAAGGACCTCGAG+CGG - chr8.1:21709758-21709777 MS.gene72107:intron 55.0%
TTGGTCTGCTGTGCCAGCAT+CGG - chr8.1:21710779-21710798 MS.gene72107:intron 55.0%
! CCTGATGGACGTGTTGTTGG+CGG - chr8.1:21710145-21710164 MS.gene72107:intron 55.0%
! TGTGCCAGCATCGGATGCAA+AGG - chr8.1:21710788-21710807 MS.gene72107:intron 55.0%
!! CGGAGGAGTAGCTGGTTTGT+TGG - chr8.1:21710165-21710184 MS.gene72107:intron 55.0%
!! TCTACCGGTGTTGGTGAAGG+AGG - chr8.1:21708495-21708514 MS.gene72107:CDS 55.0%
CCGCCAACAACACGTCCATC+AGG + chr8.1:21710148-21710167 None:intergenic 60.0%
CGTCAGCCCGATTCTTCTGG+GGG - chr8.1:21709825-21709844 MS.gene72107:intron 60.0%
GGCGTGATTCAAGTGGTCGG+TGG - chr8.1:21710307-21710326 MS.gene72107:intron 60.0%
GTTGTTGGCGGAGGAGTAGC+TGG - chr8.1:21710157-21710176 MS.gene72107:intron 60.0%
! GATGGACGTGTTGTTGGCGG+AGG - chr8.1:21710148-21710167 MS.gene72107:intron 60.0%
GGTGGCTGCAAGTCCAGTGC+AGG - chr8.1:21710186-21710205 MS.gene72107:intron 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 21708289 21710854 21708289 ID=MS.gene72107
chr8.1 mRNA 21708289 21710854 21708289 ID=MS.gene72107.t1;Parent=MS.gene72107
chr8.1 exon 21710815 21710854 21710815 ID=MS.gene72107.t1.exon1;Parent=MS.gene72107.t1
chr8.1 CDS 21710815 21710854 21710815 ID=cds.MS.gene72107.t1;Parent=MS.gene72107.t1
chr8.1 exon 21709676 21709743 21709676 ID=MS.gene72107.t1.exon2;Parent=MS.gene72107.t1
chr8.1 CDS 21709676 21709743 21709676 ID=cds.MS.gene72107.t1;Parent=MS.gene72107.t1
chr8.1 exon 21709280 21709411 21709280 ID=MS.gene72107.t1.exon3;Parent=MS.gene72107.t1
chr8.1 CDS 21709280 21709411 21709280 ID=cds.MS.gene72107.t1;Parent=MS.gene72107.t1
chr8.1 exon 21708936 21709100 21708936 ID=MS.gene72107.t1.exon4;Parent=MS.gene72107.t1
chr8.1 CDS 21708936 21709100 21708936 ID=cds.MS.gene72107.t1;Parent=MS.gene72107.t1
chr8.1 exon 21708289 21708525 21708289 ID=MS.gene72107.t1.exon5;Parent=MS.gene72107.t1
chr8.1 CDS 21708289 21708525 21708289 ID=cds.MS.gene72107.t1;Parent=MS.gene72107.t1
Gene Sequence

>MS.gene72107

ATGTCAGAAGCAACTTCAAATTCCAACACTATAATTCTAAGTAAGTTTCTTTATGAAAATGTTTTACAAGATGATAATGCTCCTCTTTGGGCCTATGTCAGTAAGTTCTTACTATAAAGTAAAAACTCATTTGTTGAGAATTTATGGAACTGAAACTTCTGTGTGTCTTAATGTAAATGATGAGTATTTGTCTGAGTTGCATGCAATCTACCGGTGTTGGTGAAGGAGGAGATGAAATTAATACTATTTCAATATCTTAGTTTGGATTTTTCGAAGACCATGTTAAAAACTGTGTACTGAGTTTTGGAAGATAATGATTTGCAATTTCTATTTTATATTTTACTAATGGTTAAGAGCTATGTTTTTAATTTAATTTTCTTAAGTTGAAATATTATATTTATTAGTATATTTTATATATGTATCGTATCCTATAATTTTCAATGAATGACGAATCGCCGTATCGGATGTGTATTGTATCTGATACTCGTTTCTTGTCTGTGATTCATAGGTAGTATTGTTATTTTGAATCTATAATTTCTTTTTTTCCATACATTGTTTTGAGTTAATTCAAATATGATCTTCCCTTTTTGTTTAACTTTTAATTCTCGTAAGCTTCTAAATTTGCTAATTGGATGAAGCTTATTTCCCAAATTTCTGCTTTTACATATGTGCACCAACTTAAAACTTTAGCTTTGTAATTCTCTAAAAATTTGGTTGATGTCTGAGTCTGACATATATGATATGATGTAGAATTTTGAAACACTTATTTACAAATAATAAAATAGCATTTAGTTTCATATTAAATGGTTTTCCTTGACTACCTGATATAAGATATTTACCCTCTCAGATTGCTGCTGCACTGTACATTCTATGCTGTCTTATATATTAGGACTAAAATGATATAAAGCATCTTGAGATGGACTTAAAAGATTATTCTCTTAGAATCTTATTCTCTTAGGACAAAAGCATAGTGATGTTTCAACTTTTTATTAGATCTAAATATTCAAATTCTTAATTTGGCCAAAATTATAGACGCCTTATAATTGAAACGCCGAGACTTTTATCATTTTCAATTTGATTATTAATTATTGTTAACATTTACATTTTTTAGGTGAATGGGTCCCTTGCTCTGTTGGTTCAAATTTTACACCCCACATCATCACTGTTAATGCTGGAGAGGTAATTTTCAGAAATATCTATTGACTATGCTGTAATCCTGTTATTTGGGGAATTAAAAAGTCTTATTTACATGCATGTTTTTTGTAGAATGAAGTGATGATAAAATTAGGGACTAATTATAAACAGAATAAAAGTGAGAGGGAGCATTTAGTAACATGTTAATTTCCTGTCATATCTGTGTGATCACTTACTTCTTTTTCAGTGATAACTGGAAAATAGTCTAACCGATGATTGTCAGCAATTTTGTGTGTATGGTTATGTTAGGATGTTACCATGAAGGTTATTTCATTTTCTCAGCAAGGACCTCGAGCGGTATGCATTCTTTCAGCAAATGGTGTCATAAAAAGTGTCACACTTCGTCAGCCCGATTCTTCTGGGGGCACATTGACATATGAGGTGAAGCATTTGTGCAAATTTTTATTATCATTCCATCTTATAGAAGAGAACTTTCATTTGGTTCCACAATGCATTTAATGATCTACACAGTTCAAGAATGTTGTTTCTCGTGCCTTTTTGAGCATATAGTGGGATTGGATTATTTGCACGCACAGTTACTTATCTCGGTGTTTCTACAGGGACTGTTTGAAATTCTGTCTTTATCTGGTTCGTTCATGCCAAATGAAAGTGGAGGAGGAACACGAAGCAGATCAGGCGGCATGAGTGTGTCTTTGGCAAGTCCTGATGGACGTGTTGTTGGCGGAGGAGTAGCTGGTTTGTTGGTGGCTGCAAGTCCAGTGCAGGTATTTATTCTATCCGTAAGGGAGAATTTTGCAAATTAAAAGTGAAATAATAAATAAAAACAAAAACATTATTTCAAATTGAATGAACCTTTTTAATTTGGCGTGATTCAAGTGGTCGGTGGTTTGAGTCTCTTAAGCATGTGGTCATGGTTCAATCTCTAACTCATTTGTATTAAAATTCACCATTTGAGAAAGATAACTCTTAACTGCGCTTCGAATTTTCGAATAAATTAGATGCAGTTGCACGCATTTCTAGAAAACAAACCTTACAATGACAACTCCATTTCTAGCGAACAAACATTCAATGGCAACTCAATTATAGCAACATGAATAAGCTGGTGATTTAGTATTTACTCGATAACAAGTTTGTTTGATTCTGATCATTCCAATTTCAAACATGTATCTACCAGGTAGTGGTTGGTAGTTTTATGGCAGGAAACCAACATGAGCAGAAGCCAAGAAATCAGAAGCATGATGTGGTATCAACCGTGTCATCTCCTGCTGTTGTTCCCATCCCTACTCTTGATCCAGTACCTATTCTATCATCAGTAACTTCCTTCCGTGGAGATAATTGGTCTGCTGTGCCAGCATCGGATGCAAAGGATAAGCCCGCTGCTGATATTAATGTGTCTCTTCCTGGAGGCTAA
Protein sequence

>MS.gene72107.t1

MSEATSNSNTIILSEWVPCSVGSNFTPHIITVNAGEDVTMKVISFSQQGPRAVCILSANGVIKSVTLRQPDSSGGTLTYEGLFEILSLSGSFMPNESGGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFMAGNQHEQKPRNQKHDVVSTVSSPAVVPIPTLDPVPILSSVTSFRGDNWSAVPASDAKDKPAADINVSLPGG