AlfalfaGEDB | MS.gene059402

M. sativa cultivar XinJiangDaYe / MS.gene059402

KEGG: -
GO: -
PFAM: PF16720.8

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059402.t1	XP_013452188.1	87.1	116	15	0	1	116	22	137	1.80E-53	218.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059402.t1	P62929	39.7	116	62	5	2	116	22	130	6.8e-14	78.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059402.t1	A0A072U9W9	87.1	116	15	0	1	116	22	137	1.3e-53	218.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04932	MS.gene059402	0.813494	2.49E-51	-1.69E-46
MS.gene049549	MS.gene059402	0.829795	4.21E-55	-1.69E-46
MS.gene050971	MS.gene059402	-0.819399	1.19E-52	-1.69E-46
MS.gene051131	MS.gene059402	0.805991	1.02E-49	-1.69E-46
MS.gene05240	MS.gene059402	0.826202	3.09E-54	-1.69E-46
MS.gene052702	MS.gene059402	0.822685	2.08E-53	-1.69E-46
MS.gene053031	MS.gene059402	0.813484	2.50E-51	-1.69E-46
MS.gene053449	MS.gene059402	-0.814758	1.31E-51	-1.69E-46
MS.gene053912	MS.gene059402	-0.801285	9.68E-49	-1.69E-46
MS.gene054146	MS.gene059402	0.811263	7.64E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059402.t1	MTR_6g047880	87.069	116	15	0	1	116	22	137	2.06e-72	212
MS.gene059402.t1	MTR_6g047900	75.424	118	22	3	1	116	22	134	3.82e-56	171
MS.gene059402.t1	MTR_7g029540	62.376	101	34	2	1	100	24	121	1.31e-37	123
MS.gene059402.t1	MTR_3g463570	50.000	112	52	3	1	111	23	131	3.41e-25	92.8
MS.gene059402.t1	MTR_3g463570	50.000	112	52	3	1	111	43	151	6.15e-25	92.4
MS.gene059402.t1	MTR_3g067280	43.750	112	60	2	1	112	22	130	5.39e-23	87.0
MS.gene059402.t1	MTR_3g067500	39.823	113	64	3	1	112	1	110	2.11e-22	84.7
MS.gene059402.t1	MTR_7g056817	43.590	117	58	5	1	112	22	135	3.06e-22	85.1
MS.gene059402.t1	MTR_3g067437	41.964	112	58	3	1	109	22	129	5.75e-22	84.3
MS.gene059402.t1	MTR_7g056803	43.519	108	48	2	18	112	27	134	6.16e-22	84.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 29 sgRNAs with CRISPR-Local

Find 33 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATCTTGTGAAGATACC+TGG	0.482787	6.3:-42576429	MS.gene059402:CDS
AACAAACAACCATATAACAA+CGG	0.645913	6.3:+42576541	None:intergenic
AAGATCTTGTGAAGATACCT+GGG	0.596931	6.3:-42576428	MS.gene059402:CDS
AATGCAAAGAGAAGGGACGT+GGG	0.703464	6.3:-42576374	MS.gene059402:CDS
ACAACCTTCACCGCACGTTT+GGG	0.398282	6.3:+42576509	None:intergenic
ACAAGATCTTTATATGATGC+AGG	0.450360	6.3:+42576441	None:intergenic
ACATCCCAAACGTGCGGTGA+AGG	0.531716	6.3:-42576513	MS.gene059402:CDS
AGAAGCAAGCCGTTGTTATA+TGG	0.349746	6.3:-42576550	MS.gene059402:CDS
AGCATCTTCAAGAAGTCTTT+TGG	0.221192	6.3:+42576246	None:intergenic
ATCTTCTGCCTCAGATAAAG+AGG	0.487203	6.3:+42576299	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAGATCTTTATATGATGC+AGG	+	chr6.3:42576356-42576375	None:intergenic	30.0%
CACAAACCATAATCAACATT+AGG	+	chr6.3:42576470-42576489	None:intergenic	30.0%
AAAGATCTTGTGAAGATACC+TGG	-	chr6.3:42576365-42576384	MS.gene059402:CDS	35.0%
AAGATCTTGTGAAGATACCT+GGG	-	chr6.3:42576366-42576385	MS.gene059402:CDS	35.0%
CCATAATCAACATTAGGACT+AGG	+	chr6.3:42576464-42576483	None:intergenic	35.0%
GATCTTTATATGATGCAGGT+TGG	+	chr6.3:42576352-42576371	None:intergenic	35.0%
AGAAGCAAGCCGTTGTTATA+TGG	-	chr6.3:42576244-42576263	MS.gene059402:CDS	40.0%
ATCTTCTGCCTCAGATAAAG+AGG	+	chr6.3:42576498-42576517	None:intergenic	40.0%
CATGTGGAATGCAAAGAGAA+GGG	-	chr6.3:42576413-42576432	MS.gene059402:CDS	40.0%
CTTCTTGAAGATGCTTGAGA+TGG	-	chr6.3:42576556-42576575	MS.gene059402:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	42576233	42576583	42576233	ID=MS.gene059402
chr6.3	mRNA	42576233	42576583	42576233	ID=MS.gene059402.t1;Parent=MS.gene059402
chr6.3	exon	42576233	42576583	42576233	ID=MS.gene059402.t1.exon1;Parent=MS.gene059402.t1
chr6.3	CDS	42576233	42576583	42576233	ID=cds.MS.gene059402.t1;Parent=MS.gene059402.t1

Gene Sequence	>MS.gene059402 ATGGAAAAAGTAGAAGCAAGCCGTTGTTATATGGTTGTTTGTTCAGCGACATCCCAAACGTGCGGTGAAGGTTGTGTTTGTTTCCCCACTGATCCATGGGCGGGTGAATATGATTGCCAACCTGCATCATATAAAGATCTTGTGAAGATACCTGGGAAAAATACTAACTTTTGTCAGTCTCATGTGGAATGCAAAGAGAAGGGACGTGGGAGCTTCTGCGCTCGTTATCCTAGTCCTAATGTTGATTATGGTTTGTGTGTTGCCTCTTTATCTGAGGCAGAAGATTTCTTCAAGATTGCCTCTAAATCTACAGTCCCAAAAGACTTCTTGAAGATGCTTGAGATGGCTTGA
Protein sequence	>MS.gene059402.t1 MEKVEASRCYMVVCSATSQTCGEGCVCFPTDPWAGEYDCQPASYKDLVKIPGKNTNFCQSHVECKEKGRGSFCARYPSPNVDYGLCVASLSEAEDFFKIASKSTVPKDFLKMLEMA