Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72279.t1 | ABI37007.2 | 98.9 | 181 | 2 | 0 | 1 | 181 | 83 | 263 | 1.80E-105 | 391.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72279.t1 | Q39857 | 92.8 | 181 | 13 | 0 | 1 | 181 | 85 | 265 | 5.5e-103 | 374.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72279.t1 | Q2HRU5 | 98.9 | 181 | 2 | 0 | 1 | 181 | 83 | 263 | 1.3e-105 | 391.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054343 | MS.gene72279 | -0.810895 | 9.18E-51 | -1.69E-46 |
MS.gene056266 | MS.gene72279 | -0.862297 | 5.60E-64 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72279.t1 | MTR_7g084770 | 98.895 | 181 | 2 | 0 | 1 | 181 | 83 | 263 | 3.17e-134 | 377 |
MS.gene72279.t1 | MTR_7g084760 | 98.343 | 181 | 3 | 0 | 1 | 181 | 83 | 263 | 2.48e-133 | 375 |
MS.gene72279.t1 | MTR_7g084750 | 88.398 | 181 | 21 | 0 | 1 | 181 | 83 | 263 | 5.68e-125 | 353 |
MS.gene72279.t1 | MTR_6g033085 | 86.740 | 181 | 24 | 0 | 1 | 181 | 83 | 263 | 4.66e-121 | 343 |
MS.gene72279.t1 | MTR_6g033055 | 86.740 | 181 | 24 | 0 | 1 | 181 | 83 | 263 | 3.45e-120 | 342 |
MS.gene72279.t1 | MTR_4g045853 | 56.085 | 189 | 75 | 2 | 1 | 181 | 76 | 264 | 8.69e-75 | 226 |
MS.gene72279.t1 | MTR_2g089140 | 56.085 | 189 | 75 | 2 | 1 | 181 | 11 | 199 | 1.39e-74 | 223 |
MS.gene72279.t1 | MTR_4g097640 | 57.143 | 182 | 76 | 2 | 1 | 181 | 83 | 263 | 1.92e-74 | 225 |
MS.gene72279.t1 | MTR_4g097670 | 57.143 | 182 | 76 | 2 | 1 | 181 | 83 | 263 | 1.92e-74 | 225 |
MS.gene72279.t1 | MTR_4g097700 | 57.143 | 182 | 76 | 2 | 1 | 181 | 120 | 300 | 2.07e-74 | 226 |
MS.gene72279.t1 | MTR_4g128410 | 60.656 | 183 | 67 | 2 | 1 | 181 | 76 | 255 | 5.13e-74 | 224 |
MS.gene72279.t1 | MTR_2g089140 | 56.085 | 189 | 75 | 2 | 1 | 181 | 74 | 262 | 1.11e-73 | 223 |
MS.gene72279.t1 | MTR_8g081040 | 59.669 | 181 | 67 | 2 | 1 | 181 | 82 | 256 | 8.82e-73 | 221 |
MS.gene72279.t1 | MTR_1g105900 | 56.044 | 182 | 79 | 1 | 1 | 181 | 85 | 266 | 2.33e-72 | 220 |
MS.gene72279.t1 | MTR_3g084620 | 59.116 | 181 | 67 | 1 | 1 | 181 | 79 | 252 | 7.39e-72 | 218 |
MS.gene72279.t1 | MTR_3g084630 | 59.116 | 181 | 67 | 1 | 1 | 181 | 79 | 252 | 7.89e-72 | 218 |
MS.gene72279.t1 | MTR_6g088320 | 51.087 | 184 | 87 | 2 | 1 | 181 | 75 | 258 | 2.30e-70 | 215 |
MS.gene72279.t1 | MTR_7g093530 | 58.470 | 183 | 71 | 2 | 1 | 181 | 75 | 254 | 1.54e-69 | 213 |
MS.gene72279.t1 | MTR_8g102910 | 53.261 | 184 | 83 | 2 | 1 | 181 | 71 | 254 | 2.07e-69 | 212 |
MS.gene72279.t1 | MTR_4g128590 | 65.068 | 146 | 51 | 0 | 1 | 146 | 66 | 211 | 3.39e-69 | 211 |
MS.gene72279.t1 | MTR_1g105495 | 55.676 | 185 | 78 | 2 | 1 | 181 | 86 | 270 | 4.84e-69 | 212 |
MS.gene72279.t1 | MTR_4g128580 | 57.979 | 188 | 68 | 2 | 1 | 181 | 77 | 260 | 5.12e-69 | 211 |
MS.gene72279.t1 | MTR_4g128570 | 64.667 | 150 | 53 | 0 | 1 | 150 | 82 | 231 | 3.83e-68 | 209 |
MS.gene72279.t1 | MTR_2g038860 | 64.384 | 146 | 52 | 0 | 1 | 146 | 77 | 222 | 2.88e-66 | 204 |
MS.gene72279.t1 | MTR_2g038705 | 64.384 | 146 | 52 | 0 | 1 | 146 | 77 | 222 | 2.88e-66 | 204 |
MS.gene72279.t1 | MTR_4g126920 | 63.014 | 146 | 54 | 0 | 1 | 146 | 76 | 221 | 3.70e-66 | 204 |
MS.gene72279.t1 | MTR_4g128400 | 51.913 | 183 | 83 | 2 | 1 | 181 | 79 | 258 | 7.64e-65 | 201 |
MS.gene72279.t1 | MTR_8g102220 | 53.591 | 181 | 65 | 2 | 1 | 181 | 80 | 241 | 3.40e-64 | 199 |
MS.gene72279.t1 | MTR_8g013055 | 51.685 | 178 | 84 | 2 | 2 | 178 | 82 | 258 | 1.63e-63 | 197 |
MS.gene72279.t1 | MTR_5g091730 | 55.769 | 156 | 68 | 1 | 1 | 156 | 79 | 233 | 2.60e-60 | 189 |
MS.gene72279.t1 | MTR_3g089540 | 48.889 | 180 | 88 | 1 | 1 | 180 | 81 | 256 | 8.44e-60 | 188 |
MS.gene72279.t1 | MTR_7g056090 | 50.575 | 174 | 81 | 4 | 5 | 177 | 87 | 256 | 3.72e-54 | 173 |
MS.gene72279.t1 | MTR_2g049030 | 47.929 | 169 | 81 | 5 | 5 | 172 | 85 | 247 | 8.18e-46 | 152 |
MS.gene72279.t1 | MTR_1g063020 | 44.785 | 163 | 78 | 5 | 1 | 155 | 89 | 247 | 1.49e-43 | 146 |
MS.gene72279.t1 | MTR_7g102260 | 46.795 | 156 | 72 | 4 | 1 | 148 | 86 | 238 | 5.74e-43 | 145 |
MS.gene72279.t1 | MTR_8g090100 | 46.897 | 145 | 72 | 2 | 6 | 146 | 79 | 222 | 1.01e-42 | 145 |
MS.gene72279.t1 | MTR_2g049130 | 44.767 | 172 | 90 | 5 | 5 | 175 | 84 | 251 | 1.66e-42 | 143 |
MS.gene72279.t1 | MTR_4g057450 | 38.860 | 193 | 95 | 6 | 1 | 181 | 99 | 280 | 2.60e-42 | 144 |
MS.gene72279.t1 | MTR_1g033420 | 47.682 | 151 | 72 | 4 | 2 | 146 | 84 | 233 | 2.97e-41 | 141 |
MS.gene72279.t1 | MTR_2g095800 | 44.872 | 156 | 75 | 4 | 1 | 148 | 103 | 255 | 5.57e-41 | 140 |
MS.gene72279.t1 | MTR_5g029100 | 43.836 | 146 | 76 | 3 | 6 | 146 | 67 | 211 | 2.10e-40 | 139 |
MS.gene72279.t1 | MTR_5g029100 | 43.836 | 146 | 76 | 3 | 6 | 146 | 98 | 242 | 5.95e-40 | 139 |
MS.gene72279.t1 | MTR_8g064180 | 34.574 | 188 | 112 | 4 | 4 | 181 | 100 | 286 | 1.91e-36 | 129 |
MS.gene72279.t1 | MTR_8g479340 | 36.301 | 146 | 32 | 3 | 21 | 165 | 10 | 95 | 1.31e-20 | 83.2 |
MS.gene72279.t1 | MTR_8g032640 | 35.211 | 142 | 84 | 4 | 4 | 143 | 65 | 200 | 7.58e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72279.t1 | AT5G13870 | 84.530 | 181 | 28 | 0 | 1 | 181 | 83 | 263 | 7.57e-118 | 335 |
MS.gene72279.t1 | AT5G13870 | 84.530 | 181 | 28 | 0 | 1 | 181 | 83 | 263 | 7.57e-118 | 335 |
MS.gene72279.t1 | AT5G13870 | 84.530 | 181 | 28 | 0 | 1 | 181 | 83 | 263 | 7.57e-118 | 335 |
MS.gene72279.t1 | AT2G06850 | 79.558 | 181 | 37 | 0 | 1 | 181 | 26 | 206 | 1.20e-113 | 323 |
MS.gene72279.t1 | AT2G06850 | 80.899 | 178 | 34 | 0 | 4 | 181 | 89 | 266 | 3.10e-113 | 324 |
MS.gene72279.t1 | AT3G23730 | 60.870 | 184 | 69 | 1 | 1 | 181 | 78 | 261 | 2.73e-78 | 235 |
MS.gene72279.t1 | AT4G14130 | 60.109 | 183 | 69 | 2 | 1 | 181 | 79 | 259 | 1.11e-74 | 226 |
MS.gene72279.t1 | AT4G03210 | 56.831 | 183 | 77 | 1 | 1 | 181 | 50 | 232 | 1.97e-74 | 224 |
MS.gene72279.t1 | AT5G65730 | 56.044 | 182 | 78 | 2 | 1 | 181 | 86 | 266 | 3.03e-74 | 225 |
MS.gene72279.t1 | AT4G03210 | 56.831 | 183 | 77 | 1 | 1 | 181 | 78 | 260 | 3.35e-74 | 225 |
MS.gene72279.t1 | AT4G37800 | 54.945 | 182 | 80 | 2 | 1 | 181 | 85 | 265 | 7.80e-72 | 219 |
MS.gene72279.t1 | AT5G57550 | 59.394 | 165 | 67 | 0 | 1 | 165 | 81 | 245 | 1.09e-71 | 218 |
MS.gene72279.t1 | AT1G11545 | 58.564 | 181 | 69 | 3 | 1 | 175 | 89 | 269 | 4.01e-70 | 215 |
MS.gene72279.t1 | AT5G57540 | 54.891 | 184 | 76 | 3 | 1 | 181 | 77 | 256 | 1.03e-68 | 211 |
MS.gene72279.t1 | AT4G30270 | 56.906 | 181 | 63 | 2 | 1 | 181 | 75 | 240 | 1.14e-68 | 210 |
MS.gene72279.t1 | AT5G57560 | 55.080 | 187 | 74 | 2 | 1 | 181 | 74 | 256 | 1.28e-68 | 210 |
MS.gene72279.t1 | AT5G57530 | 54.891 | 184 | 76 | 3 | 1 | 181 | 78 | 257 | 2.32e-68 | 210 |
MS.gene72279.t1 | AT2G14620 | 52.198 | 182 | 86 | 1 | 1 | 181 | 38 | 219 | 3.55e-67 | 206 |
MS.gene72279.t1 | AT2G14620 | 52.198 | 182 | 86 | 1 | 1 | 181 | 27 | 208 | 3.57e-67 | 205 |
MS.gene72279.t1 | AT2G14620 | 52.198 | 182 | 86 | 1 | 1 | 181 | 88 | 269 | 1.05e-66 | 206 |
MS.gene72279.t1 | AT5G48070 | 52.486 | 181 | 86 | 0 | 1 | 181 | 81 | 261 | 2.93e-66 | 204 |
MS.gene72279.t1 | AT4G30280 | 63.014 | 146 | 54 | 0 | 1 | 146 | 81 | 226 | 1.86e-65 | 202 |
MS.gene72279.t1 | AT4G25810 | 54.301 | 186 | 76 | 3 | 1 | 181 | 77 | 258 | 7.17e-65 | 201 |
MS.gene72279.t1 | AT1G65310 | 63.014 | 146 | 54 | 0 | 1 | 146 | 81 | 226 | 7.92e-65 | 201 |
MS.gene72279.t1 | AT1G65310 | 63.014 | 146 | 54 | 0 | 1 | 146 | 103 | 248 | 8.20e-65 | 201 |
MS.gene72279.t1 | AT2G18800 | 50.510 | 196 | 79 | 3 | 1 | 181 | 79 | 271 | 2.08e-64 | 200 |
MS.gene72279.t1 | AT4G30290 | 53.889 | 180 | 78 | 2 | 1 | 180 | 76 | 250 | 5.05e-64 | 198 |
MS.gene72279.t1 | AT4G28850 | 50.000 | 184 | 88 | 2 | 1 | 180 | 78 | 261 | 4.66e-63 | 196 |
MS.gene72279.t1 | AT4G13090 | 52.198 | 182 | 82 | 3 | 1 | 179 | 83 | 262 | 1.02e-62 | 196 |
MS.gene72279.t1 | AT4G25820 | 62.676 | 142 | 53 | 0 | 1 | 142 | 81 | 222 | 1.62e-62 | 195 |
MS.gene72279.t1 | AT4G13080 | 48.000 | 175 | 88 | 3 | 3 | 177 | 92 | 263 | 9.39e-60 | 188 |
MS.gene72279.t1 | AT3G25050 | 50.000 | 178 | 81 | 5 | 2 | 175 | 86 | 259 | 7.61e-59 | 186 |
MS.gene72279.t1 | AT3G44990 | 50.000 | 156 | 67 | 5 | 1 | 148 | 88 | 240 | 2.69e-45 | 151 |
MS.gene72279.t1 | AT1G32170 | 49.007 | 151 | 70 | 4 | 2 | 146 | 83 | 232 | 1.09e-44 | 150 |
MS.gene72279.t1 | AT2G36870 | 44.720 | 161 | 78 | 4 | 1 | 153 | 92 | 249 | 2.76e-41 | 141 |
MS.gene72279.t1 | AT4G18990 | 45.455 | 154 | 77 | 4 | 2 | 149 | 91 | 243 | 8.96e-41 | 141 |
MS.gene72279.t1 | AT1G14720 | 42.331 | 163 | 87 | 4 | 2 | 158 | 82 | 243 | 1.48e-40 | 140 |
MS.gene72279.t1 | AT2G01850 | 44.371 | 151 | 77 | 4 | 2 | 146 | 82 | 231 | 2.78e-39 | 136 |
MS.gene72279.t1 | AT4G18990 | 43.421 | 152 | 73 | 3 | 10 | 149 | 19 | 169 | 1.90e-38 | 133 |
MS.gene72279.t1 | AT3G48580 | 38.286 | 175 | 96 | 3 | 6 | 180 | 30 | 192 | 2.67e-37 | 128 |
MS.gene72279.t1 | AT3G48580 | 38.286 | 175 | 96 | 3 | 6 | 180 | 89 | 251 | 1.13e-36 | 128 |
MS.gene72279.t1 | AT1G10550 | 37.126 | 167 | 91 | 5 | 4 | 159 | 95 | 258 | 2.56e-34 | 123 |
MS.gene72279.t1 | AT2G36870 | 48.276 | 87 | 37 | 2 | 1 | 79 | 92 | 178 | 1.62e-21 | 86.7 |
MS.gene72279.t1 | AT3G48580 | 30.857 | 175 | 89 | 4 | 6 | 180 | 89 | 231 | 3.06e-21 | 87.8 |
Find 43 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCTTCATTGGTTGGTTAAA+TGG | 0.164613 | 7.1:+20321035 | None:intergenic |
TGAAGATATACAACAGTTTA+TGG | 0.169467 | 7.1:-20321019 | MS.gene72279:CDS |
GCCTTGTGTTGCACAGAATT+TGG | 0.221522 | 7.1:+20320881 | None:intergenic |
TTCACAGATACTCTATTCTA+TGG | 0.260832 | 7.1:-20321618 | MS.gene72279:CDS |
AAGAACAAAGGATCTTTCTT+TGG | 0.288385 | 7.1:-20321660 | MS.gene72279:CDS |
TACAAAAGTTTCCACATTGA+TGG | 0.366093 | 7.1:-20320924 | MS.gene72279:CDS |
GCATCAAGATCACGAAATTC+AGG | 0.366582 | 7.1:+20320840 | None:intergenic |
CTCAATGGCGTAGGCTAAGA+TGG | 0.370855 | 7.1:-20320815 | MS.gene72279:CDS |
AAACTGTTGTATATCTTCAT+TGG | 0.377706 | 7.1:+20321023 | None:intergenic |
TATCTGTGAAACTCCTTTGT+TGG | 0.396635 | 7.1:+20321631 | None:intergenic |
GTTCAAGAACAGCAAGGACT+TGG | 0.401999 | 7.1:-20321069 | MS.gene72279:CDS |
ACCTGCTATGAACGGTGCTT+TGG | 0.403200 | 7.1:+20320947 | None:intergenic |
TTGTAGATGATGTACCAATC+AGG | 0.405806 | 7.1:-20321094 | MS.gene72279:CDS |
ACATTTGTTTGTAAAATGTA+AGG | 0.414616 | 7.1:+20321706 | None:intergenic |
GAGTTCTTGGGGAACAGAAC+AGG | 0.419669 | 7.1:-20321733 | MS.gene72279:CDS |
AGTTAAGTACTTACACAATC+TGG | 0.424003 | 7.1:+20321587 | None:intergenic |
GTTTATGGAATGCTGATGAT+TGG | 0.429689 | 7.1:-20321004 | MS.gene72279:CDS |
CTGTTCTTGAACACCCTGAT+TGG | 0.452101 | 7.1:+20321080 | None:intergenic |
ATGAACATAAAGATGGTTCC+TGG | 0.454098 | 7.1:-20321909 | None:intergenic |
TTACAAACAAATGTGTTCAC+TGG | 0.454841 | 7.1:-20321697 | MS.gene72279:CDS |
GTGATCTTGATGCTGCTCAA+TGG | 0.483264 | 7.1:-20320830 | MS.gene72279:CDS |
TGTTGTATATCTTCATTGGT+TGG | 0.483857 | 7.1:+20321027 | None:intergenic |
ATGGTTCCTGGTGATTCAGC+TGG | 0.504587 | 7.1:-20321897 | MS.gene72279:CDS |
TCCAAAGCACCGTTCATAGC+AGG | 0.508716 | 7.1:-20320948 | MS.gene72279:CDS |
TTTATGGAATGCTGATGATT+GGG | 0.520881 | 7.1:-20321003 | MS.gene72279:CDS |
TGTAGATGATGTACCAATCA+GGG | 0.530316 | 7.1:-20321093 | MS.gene72279:CDS |
GTGCAACACAAGGCAAAAGA+TGG | 0.550413 | 7.1:-20320872 | MS.gene72279:CDS |
CAACACAAGGCAAAAGATGG+TGG | 0.550815 | 7.1:-20320869 | MS.gene72279:CDS |
GCCAAATTCTGTGCAACACA+AGG | 0.551441 | 7.1:-20320882 | MS.gene72279:CDS |
AATGTGTTCACTGGTGGTCA+AGG | 0.560017 | 7.1:-20321688 | MS.gene72279:CDS |
GTGGATTAGAGAAAACTGAT+TGG | 0.562589 | 7.1:-20320971 | MS.gene72279:CDS |
TTCAAGAACAGCAAGGACTT+GGG | 0.586766 | 7.1:-20321068 | MS.gene72279:CDS |
TTGATGCTGCTCAATGGCGT+AGG | 0.593657 | 7.1:-20320824 | MS.gene72279:CDS |
GATGATTGGGCAACAAGAGG+TGG | 0.601731 | 7.1:-20320990 | MS.gene72279:CDS |
TCAATGGCGTAGGCTAAGAT+GGG | 0.614694 | 7.1:-20320814 | None:intergenic |
CAAACAAATGTGTTCACTGG+TGG | 0.617357 | 7.1:-20321694 | MS.gene72279:CDS |
AACACAAGGCAAAAGATGGT+GGG | 0.620136 | 7.1:-20320868 | MS.gene72279:CDS |
TCTTTGGTTTGATCCAACAA+AGG | 0.620801 | 7.1:-20321644 | MS.gene72279:CDS |
GTCAAGGTAACAAAGAACAA+AGG | 0.646155 | 7.1:-20321672 | MS.gene72279:CDS |
ACTGTTCCAGCTGAATCACC+AGG | 0.657325 | 7.1:+20321891 | None:intergenic |
ATGATTCACAACCATCAATG+TGG | 0.677115 | 7.1:+20320913 | None:intergenic |
GCTGATGATTGGGCAACAAG+AGG | 0.682230 | 7.1:-20320993 | MS.gene72279:CDS |
CAGGGTGTTCAAGAACAGCA+AGG | 0.698366 | 7.1:-20321075 | MS.gene72279:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTAAATATGATACAATATA+TGG | + | chr7.1:20321509-20321528 | None:intergenic | 10.0% |
!! | AAAATAAACAAATTAGTTAC+TGG | + | chr7.1:20321544-20321563 | None:intergenic | 15.0% |
!! | TTACTTTATAAATCTAAAAG+AGG | + | chr7.1:20321236-20321255 | None:intergenic | 15.0% |
!! | AATCATATTGAGATATGATT+TGG | + | chr7.1:20321288-20321307 | None:intergenic | 20.0% |
!! | ACATTTGTTTGTAAAATGTA+AGG | + | chr7.1:20321009-20321028 | None:intergenic | 20.0% |
!! | ATTCAAGATTGTTAAAGATT+AGG | + | chr7.1:20321172-20321191 | None:intergenic | 20.0% |
!! | TGTATGTACAAAAACATTTA+AGG | - | chr7.1:20320856-20320875 | MS.gene72279:CDS | 20.0% |
!! | TTACACAAAAATAAATCAGT+TGG | + | chr7.1:20321576-20321595 | None:intergenic | 20.0% |
!!! | TTATTTTTGTGTAACTATGT+TGG | - | chr7.1:20321582-20321601 | MS.gene72279:intron | 20.0% |
! | AAACTGTTGTATATCTTCAT+TGG | + | chr7.1:20321692-20321711 | None:intergenic | 25.0% |
! | CTTACCTAAGAAGAATTAAT+TGG | - | chr7.1:20321422-20321441 | MS.gene72279:intron | 25.0% |
! | TACACCAATTAATTCTTCTT+AGG | + | chr7.1:20321429-20321448 | None:intergenic | 25.0% |
! | TGAAGATATACAACAGTTTA+TGG | - | chr7.1:20321693-20321712 | MS.gene72279:CDS | 25.0% |
!! | ATGATACAATATATGGATTG+TGG | + | chr7.1:20321502-20321521 | None:intergenic | 25.0% |
!!! | AAATAGATTTTGAGTTCTTG+GGG | - | chr7.1:20320968-20320987 | MS.gene72279:CDS | 25.0% |
!!! | GAAATAGATTTTGAGTTCTT+GGG | - | chr7.1:20320967-20320986 | MS.gene72279:CDS | 25.0% |
!!! | TGAAATAGATTTTGAGTTCT+TGG | - | chr7.1:20320966-20320985 | MS.gene72279:CDS | 25.0% |
AAGAACAAAGGATCTTTCTT+TGG | - | chr7.1:20321052-20321071 | MS.gene72279:CDS | 30.0% | |
AGTTAAGTACTTACACAATC+TGG | + | chr7.1:20321128-20321147 | None:intergenic | 30.0% | |
GTTAAAGATTAGGTGACTAT+TGG | + | chr7.1:20321162-20321181 | None:intergenic | 30.0% | |
TACAAAAGTTTCCACATTGA+TGG | - | chr7.1:20321788-20321807 | MS.gene72279:intron | 30.0% | |
TGTTGTATATCTTCATTGGT+TGG | + | chr7.1:20321688-20321707 | None:intergenic | 30.0% | |
TTACAAACAAATGTGTTCAC+TGG | - | chr7.1:20321015-20321034 | MS.gene72279:CDS | 30.0% | |
TTCACAGATACTCTATTCTA+TGG | - | chr7.1:20321094-20321113 | MS.gene72279:CDS | 30.0% | |
TTTATGGAATGCTGATGATT+GGG | - | chr7.1:20321709-20321728 | MS.gene72279:CDS | 30.0% | |
! | ATCTTCATTGGTTGGTTAAA+TGG | + | chr7.1:20321680-20321699 | None:intergenic | 30.0% |
AAAAGAGGAGCTAGATTTAG+TGG | + | chr7.1:20321221-20321240 | None:intergenic | 35.0% | |
AAAGAGGAGCTAGATTTAGT+GGG | + | chr7.1:20321220-20321239 | None:intergenic | 35.0% | |
ATGATTCACAACCATCAATG+TGG | + | chr7.1:20321802-20321821 | None:intergenic | 35.0% | |
GTCAAGGTAACAAAGAACAA+AGG | - | chr7.1:20321040-20321059 | MS.gene72279:CDS | 35.0% | |
GTTTATGGAATGCTGATGAT+TGG | - | chr7.1:20321708-20321727 | MS.gene72279:CDS | 35.0% | |
TATCTGTGAAACTCCTTTGT+TGG | + | chr7.1:20321084-20321103 | None:intergenic | 35.0% | |
TGTAGATGATGTACCAATCA+GGG | - | chr7.1:20321619-20321638 | MS.gene72279:CDS | 35.0% | |
TTGTAGATGATGTACCAATC+AGG | - | chr7.1:20321618-20321637 | MS.gene72279:CDS | 35.0% | |
! | CTTTTGTAACCTGCTATGAA+CGG | + | chr7.1:20321776-20321795 | None:intergenic | 35.0% |
! | GTGTAATGGAATGGTGAAAA+GGG | + | chr7.1:20321196-20321215 | None:intergenic | 35.0% |
! | TAGATTTAGTGGGTGTGTAA+TGG | + | chr7.1:20321210-20321229 | None:intergenic | 35.0% |
! | TGTGTAATGGAATGGTGAAA+AGG | + | chr7.1:20321197-20321216 | None:intergenic | 35.0% |
!! | GTGGATTAGAGAAAACTGAT+TGG | - | chr7.1:20321741-20321760 | MS.gene72279:CDS | 35.0% |
!! | TCTTTGGTTTGATCCAACAA+AGG | - | chr7.1:20321068-20321087 | MS.gene72279:CDS | 35.0% |
!!! | TGTAACTATGTTGGTTTTGC+AGG | - | chr7.1:20321591-20321610 | MS.gene72279:intron | 35.0% |
AACACAAGGCAAAAGATGGT+GGG | - | chr7.1:20321844-20321863 | MS.gene72279:intron | 40.0% | |
CAAACAAATGTGTTCACTGG+TGG | - | chr7.1:20321018-20321037 | MS.gene72279:CDS | 40.0% | |
GCATCAAGATCACGAAATTC+AGG | + | chr7.1:20321875-20321894 | None:intergenic | 40.0% | |
TTCAAGAACAGCAAGGACTT+GGG | - | chr7.1:20321644-20321663 | MS.gene72279:CDS | 40.0% | |
! | TTAGTGGGTGTGTAATGGAA+TGG | + | chr7.1:20321205-20321224 | None:intergenic | 40.0% |
AATGTGTTCACTGGTGGTCA+AGG | - | chr7.1:20321024-20321043 | MS.gene72279:CDS | 45.0% | |
CAACACAAGGCAAAAGATGG+TGG | - | chr7.1:20321843-20321862 | MS.gene72279:intron | 45.0% | |
CTGTTCTTGAACACCCTGAT+TGG | + | chr7.1:20321635-20321654 | None:intergenic | 45.0% | |
GCCAAATTCTGTGCAACACA+AGG | - | chr7.1:20321830-20321849 | MS.gene72279:intron | 45.0% | |
GCCTTGTGTTGCACAGAATT+TGG | + | chr7.1:20321834-20321853 | None:intergenic | 45.0% | |
GTGATCTTGATGCTGCTCAA+TGG | - | chr7.1:20321882-20321901 | MS.gene72279:CDS | 45.0% | |
GTGCAACACAAGGCAAAAGA+TGG | - | chr7.1:20321840-20321859 | MS.gene72279:intron | 45.0% | |
GTTCAAGAACAGCAAGGACT+TGG | - | chr7.1:20321643-20321662 | MS.gene72279:CDS | 45.0% | |
ACCTGCTATGAACGGTGCTT+TGG | + | chr7.1:20321768-20321787 | None:intergenic | 50.0% | |
ACTGTTCCAGCTGAATCACC+AGG | + | chr7.1:20320824-20320843 | None:intergenic | 50.0% | |
ATGGTTCCTGGTGATTCAGC+TGG | - | chr7.1:20320815-20320834 | MS.gene72279:CDS | 50.0% | |
CTCAATGGCGTAGGCTAAGA+TGG | - | chr7.1:20321897-20321916 | MS.gene72279:CDS | 50.0% | |
GAGTTCTTGGGGAACAGAAC+AGG | - | chr7.1:20320979-20320998 | MS.gene72279:CDS | 50.0% | |
GATGATTGGGCAACAAGAGG+TGG | - | chr7.1:20321722-20321741 | MS.gene72279:CDS | 50.0% | |
GCTGATGATTGGGCAACAAG+AGG | - | chr7.1:20321719-20321738 | MS.gene72279:CDS | 50.0% | |
TTGATGCTGCTCAATGGCGT+AGG | - | chr7.1:20321888-20321907 | MS.gene72279:CDS | 50.0% | |
! | CAGGGTGTTCAAGAACAGCA+AGG | - | chr7.1:20321637-20321656 | MS.gene72279:CDS | 50.0% |
!! | TCCAAAGCACCGTTCATAGC+AGG | - | chr7.1:20321764-20321783 | MS.gene72279:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 20320815 | 20321919 | 20320815 | ID=MS.gene72279 |
chr7.1 | mRNA | 20320815 | 20321919 | 20320815 | ID=MS.gene72279.t1;Parent=MS.gene72279 |
chr7.1 | exon | 20321878 | 20321919 | 20321878 | ID=MS.gene72279.t1.exon1;Parent=MS.gene72279.t1 |
chr7.1 | CDS | 20321878 | 20321919 | 20321878 | ID=cds.MS.gene72279.t1;Parent=MS.gene72279.t1 |
chr7.1 | exon | 20321601 | 20321794 | 20321601 | ID=MS.gene72279.t1.exon2;Parent=MS.gene72279.t1 |
chr7.1 | CDS | 20321601 | 20321794 | 20321601 | ID=cds.MS.gene72279.t1;Parent=MS.gene72279.t1 |
chr7.1 | exon | 20320815 | 20321121 | 20320815 | ID=MS.gene72279.t1.exon3;Parent=MS.gene72279.t1 |
chr7.1 | CDS | 20320815 | 20321121 | 20320815 | ID=cds.MS.gene72279.t1;Parent=MS.gene72279.t1 |
Gene Sequence |
Protein sequence |