Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72348.t1 | XP_003608655.2 | 97.3 | 300 | 8 | 0 | 1 | 300 | 1 | 300 | 2.00E-157 | 565.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72348.t1 | F4JML5 | 68.9 | 273 | 85 | 0 | 27 | 299 | 28 | 300 | 9.7e-105 | 381.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72348.t1 | G7JHN1 | 97.3 | 300 | 8 | 0 | 1 | 300 | 1 | 300 | 1.4e-157 | 565.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029856 | MS.gene72348 | PPI |
| MS.gene97484 | MS.gene72348 | PPI |
| MS.gene97486 | MS.gene72348 | PPI |
| MS.gene071146 | MS.gene72348 | PPI |
| MS.gene022937 | MS.gene72348 | PPI |
| MS.gene071145 | MS.gene72348 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72348.t1 | MTR_4g100350 | 97.333 | 300 | 8 | 0 | 1 | 300 | 1 | 300 | 0.0 | 598 |
| MS.gene72348.t1 | MTR_3g085700 | 30.196 | 255 | 169 | 3 | 52 | 298 | 17 | 270 | 1.30e-28 | 111 |
| MS.gene72348.t1 | MTR_4g120130 | 34.536 | 194 | 122 | 4 | 48 | 239 | 12 | 202 | 5.05e-25 | 105 |
| MS.gene72348.t1 | MTR_4g122220 | 29.224 | 219 | 151 | 2 | 53 | 271 | 15 | 229 | 3.28e-23 | 96.3 |
| MS.gene72348.t1 | MTR_8g064990 | 27.309 | 249 | 175 | 4 | 53 | 298 | 3 | 248 | 7.12e-22 | 92.8 |
| MS.gene72348.t1 | MTR_8g064990 | 25.170 | 294 | 212 | 5 | 10 | 298 | 32 | 322 | 5.17e-21 | 91.7 |
| MS.gene72348.t1 | MTR_2027s0010 | 28.509 | 228 | 150 | 4 | 57 | 276 | 13 | 235 | 6.64e-21 | 89.7 |
| MS.gene72348.t1 | MTR_0837s0020 | 44.762 | 105 | 55 | 1 | 102 | 206 | 206 | 307 | 2.07e-19 | 89.0 |
| MS.gene72348.t1 | MTR_6g087670 | 35.821 | 201 | 120 | 5 | 42 | 236 | 4 | 201 | 1.60e-17 | 83.2 |
| MS.gene72348.t1 | MTR_2g436300 | 33.816 | 207 | 131 | 5 | 48 | 251 | 10 | 213 | 5.15e-17 | 81.6 |
| MS.gene72348.t1 | MTR_8g010580 | 26.163 | 172 | 119 | 4 | 57 | 223 | 23 | 191 | 1.12e-12 | 67.8 |
| MS.gene72348.t1 | MTR_1535s0020 | 33.913 | 115 | 74 | 2 | 50 | 163 | 14 | 127 | 1.19e-12 | 64.3 |
| MS.gene72348.t1 | MTR_8g010580 | 26.163 | 172 | 119 | 4 | 57 | 223 | 23 | 191 | 1.19e-12 | 67.8 |
| MS.gene72348.t1 | MTR_8g010580 | 25.862 | 174 | 117 | 5 | 57 | 223 | 23 | 191 | 1.48e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72348.t1 | AT4G16800 | 68.864 | 273 | 85 | 0 | 27 | 299 | 28 | 300 | 5.81e-140 | 397 |
| MS.gene72348.t1 | AT5G43280 | 29.545 | 264 | 168 | 4 | 50 | 298 | 16 | 276 | 3.34e-29 | 112 |
| MS.gene72348.t1 | AT4G16210 | 30.667 | 225 | 140 | 6 | 53 | 271 | 18 | 232 | 9.23e-25 | 100 |
| MS.gene72348.t1 | AT5G43280 | 30.811 | 185 | 111 | 3 | 50 | 220 | 16 | 197 | 1.85e-23 | 96.3 |
| MS.gene72348.t1 | AT1G60550 | 26.690 | 281 | 199 | 5 | 22 | 298 | 54 | 331 | 1.53e-22 | 95.9 |
| MS.gene72348.t1 | AT3G06860 | 37.173 | 191 | 113 | 4 | 53 | 239 | 17 | 204 | 1.96e-17 | 83.2 |
| MS.gene72348.t1 | AT4G29010 | 33.505 | 194 | 123 | 4 | 51 | 241 | 13 | 203 | 2.52e-16 | 79.7 |
| MS.gene72348.t1 | AT4G31810 | 28.488 | 172 | 116 | 5 | 59 | 225 | 56 | 225 | 2.44e-14 | 73.2 |
| MS.gene72348.t1 | AT3G24360 | 22.846 | 267 | 193 | 6 | 33 | 291 | 38 | 299 | 1.32e-12 | 68.2 |
| MS.gene72348.t1 | AT2G30660 | 24.194 | 186 | 129 | 5 | 47 | 225 | 8 | 188 | 3.10e-12 | 67.0 |
| MS.gene72348.t1 | AT5G65940 | 25.128 | 195 | 133 | 7 | 57 | 244 | 22 | 210 | 7.61e-12 | 65.5 |
| MS.gene72348.t1 | AT5G65940 | 24.878 | 205 | 141 | 7 | 47 | 244 | 12 | 210 | 7.76e-12 | 65.9 |
| MS.gene72348.t1 | AT5G65940 | 24.878 | 205 | 141 | 7 | 47 | 244 | 12 | 210 | 7.76e-12 | 65.9 |
| MS.gene72348.t1 | AT5G65940 | 25.128 | 195 | 133 | 7 | 57 | 244 | 22 | 210 | 7.95e-12 | 65.5 |
| MS.gene72348.t1 | AT2G30650 | 25.532 | 188 | 124 | 7 | 47 | 225 | 8 | 188 | 9.27e-11 | 62.4 |
| MS.gene72348.t1 | AT2G30650 | 25.843 | 178 | 116 | 7 | 57 | 225 | 18 | 188 | 9.87e-11 | 62.0 |
Find 73 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGTTCCACATTGACATTTC+TGG | 0.129778 | 8.3:-21112072 | MS.gene72348:CDS |
| TTTACTGGTCGAAAGATTAA+TGG | 0.241785 | 8.3:-21111012 | MS.gene72348:CDS |
| CAAGCCTTCCAGTCGATCTT+TGG | 0.307720 | 8.3:+21109683 | None:intergenic |
| ATGGGTTTGGTGCTGATGAT+AGG | 0.313045 | 8.3:+21112967 | None:intergenic |
| TCTAACATCAGCTTTGGTTT+TGG | 0.321907 | 8.3:-21109736 | MS.gene72348:CDS |
| AGTCCAAGATAAGTGTTCTA+TGG | 0.332255 | 8.3:+21112948 | None:intergenic |
| TGTACCCACTATTGCTGTTA+TGG | 0.336211 | 8.3:-21111754 | MS.gene72348:CDS |
| TTGATCCGCAGTTTAGTTCC+CGG | 0.347590 | 8.3:-21112585 | MS.gene72348:CDS |
| TTAGCCATCCTTACTGCTAC+AGG | 0.361179 | 8.3:+21109789 | None:intergenic |
| CGTAGGAGCAAATGCTTTGA+TGG | 0.365191 | 8.3:-21111553 | MS.gene72348:intron |
| GACCGATCTAACATCAGCTT+TGG | 0.390674 | 8.3:-21109742 | MS.gene72348:CDS |
| GTCAATTACTGTGTTGCGGC+TGG | 0.416711 | 8.3:-21110577 | MS.gene72348:CDS |
| TCTTGGTGGTGGACTTGAAA+TGG | 0.419511 | 8.3:-21111721 | MS.gene72348:CDS |
| GGAAGAAGATTGCTATGATC+AGG | 0.420947 | 8.3:-21109715 | MS.gene72348:CDS |
| AACCCATAGAACACTTATCT+TGG | 0.425465 | 8.3:-21112951 | MS.gene72348:CDS |
| TCCTTCCATAACAGCAATAG+TGG | 0.426484 | 8.3:+21111749 | None:intergenic |
| TTTCATTCGCCGCTGTACCT+TGG | 0.427359 | 8.3:+21109636 | None:intergenic |
| AGATAAGTGTTCTATGGGTT+TGG | 0.434008 | 8.3:+21112954 | None:intergenic |
| TTGTGCTGGGGCTGATCTAA+AGG | 0.436607 | 8.3:-21112556 | MS.gene72348:intron |
| TTGATGGGTTTGCCAGAGAC+AGG | 0.439262 | 8.3:-21111537 | MS.gene72348:CDS |
| AATCTCACTGGCTCAGATTC+CGG | 0.440580 | 8.3:-21112896 | MS.gene72348:intron |
| TGGTGGACTTGAAATGGCTT+TGG | 0.450397 | 8.3:-21111715 | MS.gene72348:CDS |
| TGGCATTGAGGCGCTATCAA+TGG | 0.451098 | 8.3:-21110992 | MS.gene72348:CDS |
| CCGAGCAATTTCAAGTGCCT+TGG | 0.455064 | 8.3:+21110543 | None:intergenic |
| AGGGATTATTGAAGTTAGCT+TGG | 0.460766 | 8.3:-21112706 | MS.gene72348:CDS |
| CCAAGGCACTTGAAATTGCT+CGG | 0.465476 | 8.3:-21110543 | MS.gene72348:CDS |
| GGCATTGAGGCGCTATCAAT+GGG | 0.465523 | 8.3:-21110991 | MS.gene72348:intron |
| TGCTCGGGATATCAATCAAA+AGG | 0.472234 | 8.3:-21110527 | MS.gene72348:intron |
| ACAGGACTTGCTATAATCCC+TGG | 0.491046 | 8.3:-21111519 | MS.gene72348:CDS |
| TGGGTTTGGTGCTGATGATA+GGG | 0.491563 | 8.3:+21112968 | None:intergenic |
| TGATCCGCAGTTTAGTTCCC+GGG | 0.494453 | 8.3:-21112584 | MS.gene72348:CDS |
| CAAAGATCGACTGGAAGGCT+TGG | 0.502696 | 8.3:-21109682 | MS.gene72348:CDS |
| GTCCAAGATAAGTGTTCTAT+GGG | 0.506385 | 8.3:+21112949 | None:intergenic |
| AATAGGGCCCTGTAGCAGTA+AGG | 0.507132 | 8.3:-21109797 | MS.gene72348:intron |
| CAAGGCACTTGAAATTGCTC+GGG | 0.509246 | 8.3:-21110542 | MS.gene72348:CDS |
| TAGCCATCCTTACTGCTACA+GGG | 0.516527 | 8.3:+21109790 | None:intergenic |
| GAAGGAGTAGCTCTTGGTGG+TGG | 0.527355 | 8.3:-21111732 | MS.gene72348:CDS |
| GTCAAGCTTCACAATCTCAC+TGG | 0.527894 | 8.3:-21112908 | MS.gene72348:CDS |
| ATTATAGCAAGTCCTGTCTC+TGG | 0.532014 | 8.3:+21111525 | None:intergenic |
| GTTGAATTCCAAAGATCGAC+TGG | 0.547650 | 8.3:-21109691 | MS.gene72348:CDS |
| GCATGTGATATTCGAATATG+TGG | 0.548943 | 8.3:-21111693 | MS.gene72348:intron |
| AACACAGCGACTACCTAGAT+TGG | 0.556542 | 8.3:-21111064 | MS.gene72348:CDS |
| CTTGTCATGCACAGGGCAGG+TGG | 0.558617 | 8.3:-21111087 | MS.gene72348:intron |
| AACCAAAGCTGATGTTAGAT+CGG | 0.562130 | 8.3:+21109740 | None:intergenic |
| GTAGGAGCAAATGCTTTGAT+GGG | 0.562937 | 8.3:-21111552 | MS.gene72348:intron |
| GTTATGGAAGGAGTAGCTCT+TGG | 0.563981 | 8.3:-21111738 | MS.gene72348:CDS |
| TCTTGTCAATTACTGTGTTG+CGG | 0.573009 | 8.3:-21110581 | MS.gene72348:CDS |
| GGTAGGAAAATCAGTAGCAA+AGG | 0.575856 | 8.3:-21111043 | MS.gene72348:CDS |
| ATGGAAGGAGTAGCTCTTGG+TGG | 0.578725 | 8.3:-21111735 | MS.gene72348:CDS |
| ATCACAGGAACGCAGGACCA+TGG | 0.578834 | 8.3:-21112129 | MS.gene72348:intron |
| TGGCTGCATTTGCTGAAAAG+CGG | 0.579686 | 8.3:-21109662 | MS.gene72348:CDS |
| CTTAGCCTCGGATTGATCCA+TGG | 0.588003 | 8.3:+21112112 | None:intergenic |
| CCCACTATTGCTGTTATGGA+AGG | 0.594271 | 8.3:-21111750 | MS.gene72348:CDS |
| AATTCCAAAGATCGACTGGA+AGG | 0.597331 | 8.3:-21109687 | MS.gene72348:CDS |
| GCCCCAGCACAAAATACCCC+GGG | 0.600202 | 8.3:+21112567 | None:intergenic |
| AGCCCCAGCACAAAATACCC+CGG | 0.602391 | 8.3:+21112566 | None:intergenic |
| CAGGACTTGCTATAATCCCT+GGG | 0.603006 | 8.3:-21111518 | MS.gene72348:intron |
| CAGCGACTACCTAGATTGGT+AGG | 0.605465 | 8.3:-21111060 | MS.gene72348:CDS |
| TTCCACATTGACATTTCTGG+AGG | 0.607707 | 8.3:-21112069 | MS.gene72348:intron |
| GGGCCCTGTAGCAGTAAGGA+TGG | 0.608076 | 8.3:-21109793 | MS.gene72348:CDS |
| GGCTGGTGAAGCTCATTCCA+AGG | 0.612062 | 8.3:-21110560 | MS.gene72348:CDS |
| TTGCTGAAAAGCGGAAACCA+AGG | 0.638227 | 8.3:-21109653 | MS.gene72348:CDS |
| TCGAAAGATTAATGGCATTG+AGG | 0.647855 | 8.3:-21111004 | MS.gene72348:CDS |
| TTATCTGATCACAGGAACGC+AGG | 0.649519 | 8.3:-21112136 | MS.gene72348:intron |
| CCTTCCATAACAGCAATAGT+GGG | 0.670324 | 8.3:+21111750 | None:intergenic |
| GATCCGCAGTTTAGTTCCCG+GGG | 0.677040 | 8.3:-21112583 | MS.gene72348:CDS |
| GCTAAAAGAGCTATTAACGA+GGG | 0.677278 | 8.3:-21109771 | MS.gene72348:CDS |
| CAGGACCATGGATCAATCCG+AGG | 0.692671 | 8.3:-21112117 | MS.gene72348:CDS |
| AAGCGGAAACCAAGGTACAG+CGG | 0.698539 | 8.3:-21109645 | MS.gene72348:CDS |
| GGCTAAAAGAGCTATTAACG+AGG | 0.701626 | 8.3:-21109772 | MS.gene72348:CDS |
| AACCTCCAGAAATGTCAATG+TGG | 0.701845 | 8.3:+21112067 | None:intergenic |
| ATACCCCGGGAACTAAACTG+CGG | 0.727381 | 8.3:+21112580 | None:intergenic |
| ATAGGGAAAGAGATGCTGCG+TGG | 0.727860 | 8.3:-21112660 | MS.gene72348:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCTAATTAAAAGTAATTT+CGG | + | chr8.3:21112643-21112662 | None:intergenic | 10.0% |
| !!! | CTTTTAATTAGAATATATTT+TGG | - | chr8.3:21112649-21112668 | MS.gene72348:CDS | 10.0% |
| !! | AAAACATTAATTCAAACTAA+TGG | - | chr8.3:21110500-21110519 | MS.gene72348:intron | 15.0% |
| !! | AAAATAAAAAAATACTATGC+TGG | + | chr8.3:21110879-21110898 | None:intergenic | 15.0% |
| !!! | ATCTACCTATTATTTTATTT+TGG | + | chr8.3:21111243-21111262 | None:intergenic | 15.0% |
| !!! | TGTCAAATTTTCAATTAAAA+AGG | + | chr8.3:21112797-21112816 | None:intergenic | 15.0% |
| !! | AAATAAACTGAAATGCTTAA+AGG | - | chr8.3:21110243-21110262 | MS.gene72348:intron | 20.0% |
| !! | AGCTACCAAAATAAAATAAT+AGG | - | chr8.3:21111235-21111254 | MS.gene72348:intron | 20.0% |
| !! | ATTACAAGTCCATATATAAA+TGG | - | chr8.3:21112250-21112269 | MS.gene72348:intron | 20.0% |
| !! | ATTTATATATGGACTTGTAA+TGG | + | chr8.3:21112251-21112270 | None:intergenic | 20.0% |
| !! | TATAAAGAGAAAATACTTGA+AGG | - | chr8.3:21112747-21112766 | MS.gene72348:intron | 20.0% |
| !!! | AAAATTTGACATTTGAGATA+AGG | - | chr8.3:21112806-21112825 | MS.gene72348:intron | 20.0% |
| !!! | AAGAATTCAGTAATTTTTTC+TGG | + | chr8.3:21111971-21111990 | None:intergenic | 20.0% |
| !!! | AATTAATTTTCAGAGTTGTT+TGG | - | chr8.3:21112721-21112740 | MS.gene72348:intron | 20.0% |
| !!! | AGTTAGAGTAAACTTTTAAT+AGG | - | chr8.3:21112855-21112874 | MS.gene72348:intron | 20.0% |
| !!! | CAACTCTGAAAATTAATTAT+AGG | + | chr8.3:21112719-21112738 | None:intergenic | 20.0% |
| !!! | CAAGAATATAGTTTTTGTTA+TGG | + | chr8.3:21111945-21111964 | None:intergenic | 20.0% |
| !!! | GTTAGAGTAAACTTTTAATA+GGG | - | chr8.3:21112856-21112875 | MS.gene72348:intron | 20.0% |
| !!! | GTTGATTTTTCATTTTTCAA+AGG | - | chr8.3:21112295-21112314 | MS.gene72348:intron | 20.0% |
| !!! | TAAATTTTCCAGATACATAA+TGG | - | chr8.3:21111264-21111283 | MS.gene72348:intron | 20.0% |
| !!! | TTGAATTTTGTTTGTTTACA+GGG | - | chr8.3:21109944-21109963 | MS.gene72348:intron | 20.0% |
| !!! | TTTGAATTTTGTTTGTTTAC+AGG | - | chr8.3:21109943-21109962 | MS.gene72348:intron | 20.0% |
| ! | AACATAAAAATACTGTTCAG+TGG | + | chr8.3:21112684-21112703 | None:intergenic | 25.0% |
| ! | AACCATTAGAAAAGATTTAG+AGG | + | chr8.3:21112585-21112604 | None:intergenic | 25.0% |
| ! | AATTCGTTCAAAATCTACTA+CGG | + | chr8.3:21110359-21110378 | None:intergenic | 25.0% |
| ! | ACATACTTTAATGATTCAGT+TGG | - | chr8.3:21112400-21112419 | MS.gene72348:intron | 25.0% |
| ! | ATAAATAACCAACTTGTGTT+TGG | - | chr8.3:21111495-21111514 | MS.gene72348:intron | 25.0% |
| ! | ATATTATGTTGAAACTGATG+CGG | - | chr8.3:21112181-21112200 | MS.gene72348:intron | 25.0% |
| ! | TCAACTAATTCTAACAAAAC+TGG | + | chr8.3:21109847-21109866 | None:intergenic | 25.0% |
| ! | TTGTACTAAATTGTGTATCA+TGG | + | chr8.3:21110391-21110410 | None:intergenic | 25.0% |
| ! | TTGTGACATTTACAAATGTA+GGG | - | chr8.3:21112210-21112229 | MS.gene72348:intron | 25.0% |
| ! | TTTGTGACATTTACAAATGT+AGG | - | chr8.3:21112209-21112228 | MS.gene72348:intron | 25.0% |
| !! | AATTGCATCAATTTGTTTGT+AGG | - | chr8.3:21111024-21111043 | MS.gene72348:CDS | 25.0% |
| !! | AATTTGTTTGTAGGATAGTT+TGG | - | chr8.3:21111033-21111052 | MS.gene72348:CDS | 25.0% |
| !!! | CTACTATTGTTTCTTTTTGT+GGG | - | chr8.3:21110750-21110769 | MS.gene72348:intron | 25.0% |
| !!! | GAATATAGTTTTTGTTATGG+TGG | + | chr8.3:21111942-21111961 | None:intergenic | 25.0% |
| !!! | GATTTTTCATTTTTCAAAGG+TGG | - | chr8.3:21112298-21112317 | MS.gene72348:intron | 25.0% |
| !!! | GCAAAGGATATTATTTTTAC+TGG | - | chr8.3:21111642-21111661 | MS.gene72348:intron | 25.0% |
| !!! | TACTATTGTTTCTTTTTGTG+GGG | - | chr8.3:21110751-21110770 | MS.gene72348:intron | 25.0% |
| AAAATAGAGAGAGAAGTTAC+CGG | + | chr8.3:21109795-21109814 | None:intergenic | 30.0% | |
| AAACCAGTGTTGTCAAATAA+CGG | - | chr8.3:21110318-21110337 | MS.gene72348:intron | 30.0% | |
| ACACAGCAAATGAATATGAA+AGG | + | chr8.3:21110807-21110826 | None:intergenic | 30.0% | |
| ATGACGACAAGAATCTATTA+CGG | + | chr8.3:21110296-21110315 | None:intergenic | 30.0% | |
| ATTCACAAAAAACTTAGCCT+CGG | + | chr8.3:21110572-21110591 | None:intergenic | 30.0% | |
| CTGAAGCTAAAAATGCTATA+GGG | - | chr8.3:21109992-21110011 | MS.gene72348:intron | 30.0% | |
| GTTCTATCAAAGACCATATT+TGG | - | chr8.3:21112545-21112564 | MS.gene72348:intron | 30.0% | |
| TATACTCTCCATTATGTATC+TGG | + | chr8.3:21111275-21111294 | None:intergenic | 30.0% | |
| TCTTTGATAGAACATTATGG+CGG | + | chr8.3:21112538-21112557 | None:intergenic | 30.0% | |
| TGATCACTATGTAAAGTGAT+CGG | - | chr8.3:21109905-21109924 | MS.gene72348:intron | 30.0% | |
| TGGTCTTTGATAGAACATTA+TGG | + | chr8.3:21112541-21112560 | None:intergenic | 30.0% | |
| TTTACTGGTCGAAAGATTAA+TGG | - | chr8.3:21111657-21111676 | MS.gene72348:intron | 30.0% | |
| ! | ATTCTTGTTTATCTGATCAC+AGG | - | chr8.3:21110525-21110544 | MS.gene72348:intron | 30.0% |
| ! | GACCTCTAAATCTTTTCTAA+TGG | - | chr8.3:21112580-21112599 | MS.gene72348:CDS | 30.0% |
| ! | GGACTACTTTATTTGTGAAA+TGG | + | chr8.3:21112000-21112019 | None:intergenic | 30.0% |
| !! | GCTACTATTGTTTCTTTTTG+TGG | - | chr8.3:21110749-21110768 | MS.gene72348:intron | 30.0% |
| !! | TACAAAGTGTTGTCAAATAG+CGG | - | chr8.3:21110406-21110425 | MS.gene72348:intron | 30.0% |
| !!! | CTTTTTGTTTGAGTTGAGAA+TGG | - | chr8.3:21111411-21111430 | MS.gene72348:intron | 30.0% |
| !!! | GATTTTTTTCTTTGCTTTCC+TGG | + | chr8.3:21111920-21111939 | None:intergenic | 30.0% |
| !!! | TGTTTCTTTTTTCATTGCGT+AGG | - | chr8.3:21111099-21111118 | MS.gene72348:intron | 30.0% |
| AACCAAAGCTGATGTTAGAT+CGG | + | chr8.3:21112932-21112951 | None:intergenic | 35.0% | |
| AACCCATAGAACACTTATCT+TGG | - | chr8.3:21109718-21109737 | MS.gene72348:CDS | 35.0% | |
| AAGGTGGTCTATTATGAAAG+AGG | - | chr8.3:21112314-21112333 | MS.gene72348:intron | 35.0% | |
| AATAGAGTCATACAATTGCC+AGG | + | chr8.3:21111872-21111891 | None:intergenic | 35.0% | |
| AATTTGTAAACATCGTACCC+AGG | + | chr8.3:21111171-21111190 | None:intergenic | 35.0% | |
| ACAACTTTCCAAACACAAGT+TGG | + | chr8.3:21111506-21111525 | None:intergenic | 35.0% | |
| AGATAAGTGTTCTATGGGTT+TGG | + | chr8.3:21109718-21109737 | None:intergenic | 35.0% | |
| AGATTTAGAGGTCAATGAGT+TGG | + | chr8.3:21112573-21112592 | None:intergenic | 35.0% | |
| AGGGATTATTGAAGTTAGCT+TGG | - | chr8.3:21109963-21109982 | MS.gene72348:intron | 35.0% | |
| AGTCCAAGATAAGTGTTCTA+TGG | + | chr8.3:21109724-21109743 | None:intergenic | 35.0% | |
| ATCACTATGTAAAGTGATCG+GGG | - | chr8.3:21109907-21109926 | MS.gene72348:intron | 35.0% | |
| ATGAAGCGCAAAGATATAAG+AGG | - | chr8.3:21111752-21111771 | MS.gene72348:CDS | 35.0% | |
| ATGTAATCTTGTCATGCACA+GGG | - | chr8.3:21111575-21111594 | MS.gene72348:intron | 35.0% | |
| ATTTGTAAACATCGTACCCA+GGG | + | chr8.3:21111170-21111189 | None:intergenic | 35.0% | |
| CATTTACAAATGTAGGGATC+AGG | - | chr8.3:21112216-21112235 | MS.gene72348:intron | 35.0% | |
| CCTGAAGCTAAAAATGCTAT+AGG | - | chr8.3:21109991-21110010 | MS.gene72348:intron | 35.0% | |
| CTATCAATGGGTATGTTGAT+TGG | - | chr8.3:21111690-21111709 | MS.gene72348:intron | 35.0% | |
| GATCACTATGTAAAGTGATC+GGG | - | chr8.3:21109906-21109925 | MS.gene72348:intron | 35.0% | |
| GCATGTGATATTCGAATATG+TGG | - | chr8.3:21110976-21110995 | MS.gene72348:intron | 35.0% | |
| GCTAAAAGAGCTATTAACGA+GGG | - | chr8.3:21112898-21112917 | MS.gene72348:CDS | 35.0% | |
| GTCCAAGATAAGTGTTCTAT+GGG | + | chr8.3:21109723-21109742 | None:intergenic | 35.0% | |
| TCAAACAAAAAGCAAGTCAC+TGG | + | chr8.3:21111403-21111422 | None:intergenic | 35.0% | |
| TCGAAAGATTAATGGCATTG+AGG | - | chr8.3:21111665-21111684 | MS.gene72348:intron | 35.0% | |
| TCTTGTCAATTACTGTGTTG+CGG | - | chr8.3:21112088-21112107 | MS.gene72348:CDS | 35.0% | |
| TGGTTATTTATGCTCATTGC+AGG | + | chr8.3:21111486-21111505 | None:intergenic | 35.0% | |
| TTGTCAAATAGCGGTTATAG+TGG | - | chr8.3:21110415-21110434 | MS.gene72348:intron | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | + | chr8.3:21112561-21112580 | None:intergenic | 35.0% |
| ! | CAGTCACTGCCATTTATATA+TGG | + | chr8.3:21112262-21112281 | None:intergenic | 35.0% |
| ! | TTGACATTTGAGATAAGGCA+TGG | - | chr8.3:21112811-21112830 | MS.gene72348:intron | 35.0% |
| !! | ACTGATTTTCCTACCAATCT+AGG | + | chr8.3:21111621-21111640 | None:intergenic | 35.0% |
| !! | ATTGTTTCTTTTTGTGGGGA+AGG | - | chr8.3:21110755-21110774 | MS.gene72348:intron | 35.0% |
| !! | TCTAACATCAGCTTTGGTTT+TGG | - | chr8.3:21112933-21112952 | MS.gene72348:CDS | 35.0% |
| !! | TTGTTTCTTTTTGTGGGGAA+GGG | - | chr8.3:21110756-21110775 | MS.gene72348:intron | 35.0% |
| !!! | CCTATAGCATTTTTAGCTTC+AGG | + | chr8.3:21109994-21110013 | None:intergenic | 35.0% |
| !!! | TTTCGAAGTTTTGAAGTAGG+AGG | + | chr8.3:21109681-21109700 | None:intergenic | 35.0% |
| AACCTCCAGAAATGTCAATG+TGG | + | chr8.3:21110605-21110624 | None:intergenic | 40.0% | |
| AATTCCAAAGATCGACTGGA+AGG | - | chr8.3:21112982-21113001 | MS.gene72348:CDS | 40.0% | |
| ACTGGCATATTCAGATTACC+AGG | + | chr8.3:21112436-21112455 | None:intergenic | 40.0% | |
| ATTATAGCAAGTCCTGTCTC+TGG | + | chr8.3:21111147-21111166 | None:intergenic | 40.0% | |
| CATGTAATCTTGTCATGCAC+AGG | - | chr8.3:21111574-21111593 | MS.gene72348:intron | 40.0% | |
| CCTTCCATAACAGCAATAGT+GGG | + | chr8.3:21110922-21110941 | None:intergenic | 40.0% | |
| CTGGCATATTCAGATTACCA+GGG | + | chr8.3:21112435-21112454 | None:intergenic | 40.0% | |
| CTGTCAAACTTCCATTGTCT+TGG | - | chr8.3:21111838-21111857 | MS.gene72348:intron | 40.0% | |
| GAATGATCATATGTTCACGC+AGG | - | chr8.3:21112065-21112084 | MS.gene72348:intron | 40.0% | |
| GAGGAAAAGACGTTACATAC+AGG | - | chr8.3:21112333-21112352 | MS.gene72348:intron | 40.0% | |
| GGAAGAAGATTGCTATGATC+AGG | - | chr8.3:21112954-21112973 | MS.gene72348:CDS | 40.0% | |
| GGCTAAAAGAGCTATTAACG+AGG | - | chr8.3:21112897-21112916 | MS.gene72348:CDS | 40.0% | |
| GGGAAAAGCAGAGAGATAAT+TGG | + | chr8.3:21112021-21112040 | None:intergenic | 40.0% | |
| GGTAGGAAAATCAGTAGCAA+AGG | - | chr8.3:21111626-21111645 | MS.gene72348:intron | 40.0% | |
| GTAGGAGCAAATGCTTTGAT+GGG | - | chr8.3:21111117-21111136 | MS.gene72348:intron | 40.0% | |
| GTTATAGCATTACAGCGTTG+TGG | - | chr8.3:21110439-21110458 | MS.gene72348:intron | 40.0% | |
| GTTGAATTCCAAAGATCGAC+TGG | - | chr8.3:21112978-21112997 | MS.gene72348:CDS | 40.0% | |
| TATGCTCATTGCAGGCTTTA+GGG | + | chr8.3:21111478-21111497 | None:intergenic | 40.0% | |
| TCCTTCCATAACAGCAATAG+TGG | + | chr8.3:21110923-21110942 | None:intergenic | 40.0% | |
| TCGTTCCACATTGACATTTC+TGG | - | chr8.3:21110597-21110616 | MS.gene72348:intron | 40.0% | |
| TGCTCGGGATATCAATCAAA+AGG | - | chr8.3:21112142-21112161 | MS.gene72348:intron | 40.0% | |
| TTATGCTCATTGCAGGCTTT+AGG | + | chr8.3:21111479-21111498 | None:intergenic | 40.0% | |
| ! | AATGTAGGGATCAGGCTTTT+TGG | - | chr8.3:21112224-21112243 | MS.gene72348:intron | 40.0% |
| ! | ATGTAGGGATCAGGCTTTTT+GGG | - | chr8.3:21112225-21112244 | MS.gene72348:intron | 40.0% |
| ! | GATGCTTAGCGTAATTTGTC+AGG | - | chr8.3:21110186-21110205 | MS.gene72348:intron | 40.0% |
| ! | TGTACCCACTATTGCTGTTA+TGG | - | chr8.3:21110915-21110934 | MS.gene72348:intron | 40.0% |
| ! | TGTTTCTTTTTGTGGGGAAG+GGG | - | chr8.3:21110757-21110776 | MS.gene72348:intron | 40.0% |
| ! | TTCCACATTGACATTTCTGG+AGG | - | chr8.3:21110600-21110619 | MS.gene72348:intron | 40.0% |
| !! | ACTATGCTGGTTTCAAAGCT+CGG | + | chr8.3:21110866-21110885 | None:intergenic | 40.0% |
| !! | GTGTCGACTGTCAACAAAAT+GGG | + | chr8.3:21110844-21110863 | None:intergenic | 40.0% |
| !!! | GGGTTTCGAAGTTTTGAAGT+AGG | + | chr8.3:21109684-21109703 | None:intergenic | 40.0% |
| AACACAGCGACTACCTAGAT+TGG | - | chr8.3:21111605-21111624 | MS.gene72348:intron | 45.0% | |
| AGGTGAACTCTCCAAGACAA+TGG | + | chr8.3:21111852-21111871 | None:intergenic | 45.0% | |
| ATTGTCTTGGAGAGTTCACC+TGG | - | chr8.3:21111851-21111870 | MS.gene72348:intron | 45.0% | |
| CGTAGGAGCAAATGCTTTGA+TGG | - | chr8.3:21111116-21111135 | MS.gene72348:intron | 45.0% | |
| GACCGATCTAACATCAGCTT+TGG | - | chr8.3:21112927-21112946 | MS.gene72348:CDS | 45.0% | |
| GTCAAGCTTCACAATCTCAC+TGG | - | chr8.3:21109761-21109780 | MS.gene72348:CDS | 45.0% | |
| GTTATGGAAGGAGTAGCTCT+TGG | - | chr8.3:21110931-21110950 | MS.gene72348:intron | 45.0% | |
| TAAGCATCATCGCCGTTAGT+CGG | + | chr8.3:21112042-21112061 | None:intergenic | 45.0% | |
| TAGCCATCCTTACTGCTACA+GGG | + | chr8.3:21112882-21112901 | None:intergenic | 45.0% | |
| TCCTGGAGTTCAACATGAGA+TGG | + | chr8.3:21111903-21111922 | None:intergenic | 45.0% | |
| TGACTCTCTCGAGTCTTAAC+TGG | + | chr8.3:21112454-21112473 | None:intergenic | 45.0% | |
| TTAGCCATCCTTACTGCTAC+AGG | + | chr8.3:21112883-21112902 | None:intergenic | 45.0% | |
| TTATCTGATCACAGGAACGC+AGG | - | chr8.3:21110533-21110552 | MS.gene72348:CDS | 45.0% | |
| TTGCTGAAAAGCGGAAACCA+AGG | - | chr8.3:21113016-21113035 | MS.gene72348:CDS | 45.0% | |
| ! | ATGCTCATTGCAGGCTTTAG+GGG | + | chr8.3:21111477-21111496 | None:intergenic | 45.0% |
| ! | CAAGGCACTTGAAATTGCTC+GGG | - | chr8.3:21112127-21112146 | MS.gene72348:intron | 45.0% |
| ! | CCAAGGCACTTGAAATTGCT+CGG | - | chr8.3:21112126-21112145 | MS.gene72348:intron | 45.0% |
| ! | CCCACTATTGCTGTTATGGA+AGG | - | chr8.3:21110919-21110938 | MS.gene72348:intron | 45.0% |
| ! | GTGCCGTTATTTGACAACAC+TGG | + | chr8.3:21110324-21110343 | None:intergenic | 45.0% |
| ! | TGGCTGCATTTGCTGAAAAG+CGG | - | chr8.3:21113007-21113026 | MS.gene72348:CDS | 45.0% |
| ! | TTGATCCGCAGTTTAGTTCC+CGG | - | chr8.3:21110084-21110103 | MS.gene72348:intron | 45.0% |
| !! | AATCTCACTGGCTCAGATTC+CGG | - | chr8.3:21109773-21109792 | MS.gene72348:CDS | 45.0% |
| !! | ACAGGACTTGCTATAATCCC+TGG | - | chr8.3:21111150-21111169 | MS.gene72348:intron | 45.0% |
| !! | ATGGGTTTGGTGCTGATGAT+AGG | + | chr8.3:21109705-21109724 | None:intergenic | 45.0% |
| !! | CAGGACTTGCTATAATCCCT+GGG | - | chr8.3:21111151-21111170 | MS.gene72348:intron | 45.0% |
| !! | GGTGTCGACTGTCAACAAAA+TGG | + | chr8.3:21110845-21110864 | None:intergenic | 45.0% |
| !! | TCTCTGCTTTTCCCGACTAA+CGG | - | chr8.3:21112027-21112046 | MS.gene72348:intron | 45.0% |
| !! | TCTTGGTGGTGGACTTGAAA+TGG | - | chr8.3:21110948-21110967 | MS.gene72348:intron | 45.0% |
| !! | TGGGTTTGGTGCTGATGATA+GGG | + | chr8.3:21109704-21109723 | None:intergenic | 45.0% |
| !! | TGGTGGACTTGAAATGGCTT+TGG | - | chr8.3:21110954-21110973 | MS.gene72348:intron | 45.0% |
| !!! | TATTTTTTTATTTTTTATTC+AGG | - | chr8.3:21110885-21110904 | MS.gene72348:intron | 5.0% |
| AAGCATCATCGCCGTTAGTC+GGG | + | chr8.3:21112041-21112060 | None:intergenic | 50.0% | |
| AAGCGGAAACCAAGGTACAG+CGG | - | chr8.3:21113024-21113043 | MS.gene72348:CDS | 50.0% | |
| AATAGGGCCCTGTAGCAGTA+AGG | - | chr8.3:21112872-21112891 | MS.gene72348:intron | 50.0% | |
| AATCTTGTCATGCACAGGGC+AGG | - | chr8.3:21111579-21111598 | MS.gene72348:intron | 50.0% | |
| ACCGCCTTATCCCACTAAGT+GGG | - | chr8.3:21112491-21112510 | MS.gene72348:intron | 50.0% | |
| ATACCCCGGGAACTAAACTG+CGG | + | chr8.3:21110092-21110111 | None:intergenic | 50.0% | |
| ATAGGGAAAGAGATGCTGCG+TGG | - | chr8.3:21110009-21110028 | MS.gene72348:intron | 50.0% | |
| ATGGAAGGAGTAGCTCTTGG+TGG | - | chr8.3:21110934-21110953 | MS.gene72348:intron | 50.0% | |
| CAAAGATCGACTGGAAGGCT+TGG | - | chr8.3:21112987-21113006 | MS.gene72348:CDS | 50.0% | |
| CAAGCCTTCCAGTCGATCTT+TGG | + | chr8.3:21112989-21113008 | None:intergenic | 50.0% | |
| CAGCGACTACCTAGATTGGT+AGG | - | chr8.3:21111609-21111628 | MS.gene72348:intron | 50.0% | |
| CTTAGCCTCGGATTGATCCA+TGG | + | chr8.3:21110560-21110579 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr8.3:21112496-21112515 | MS.gene72348:intron | 50.0% | |
| GCCATCTCATGTTGAACTCC+AGG | - | chr8.3:21111899-21111918 | MS.gene72348:intron | 50.0% | |
| GTCAATTACTGTGTTGCGGC+TGG | - | chr8.3:21112092-21112111 | MS.gene72348:CDS | 50.0% | |
| TTGTGCTGGGGCTGATCTAA+AGG | - | chr8.3:21110113-21110132 | MS.gene72348:intron | 50.0% | |
| ! | CCGAGCAATTTCAAGTGCCT+TGG | + | chr8.3:21112129-21112148 | None:intergenic | 50.0% |
| ! | GGCATTGAGGCGCTATCAAT+GGG | - | chr8.3:21111678-21111697 | MS.gene72348:intron | 50.0% |
| ! | TCTTTTTGTGGGGAAGGGGT+TGG | - | chr8.3:21110761-21110780 | MS.gene72348:intron | 50.0% |
| ! | TGATCCGCAGTTTAGTTCCC+GGG | - | chr8.3:21110085-21110104 | MS.gene72348:intron | 50.0% |
| ! | TGGCATTGAGGCGCTATCAA+TGG | - | chr8.3:21111677-21111696 | MS.gene72348:intron | 50.0% |
| !! | TTCCCGGGGTATTTTGTGCT+GGG | - | chr8.3:21110100-21110119 | MS.gene72348:intron | 50.0% |
| !! | TTGATGGGTTTGCCAGAGAC+AGG | - | chr8.3:21111132-21111151 | MS.gene72348:intron | 50.0% |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr8.3:21112504-21112523 | MS.gene72348:intron | 55.0% | |
| AGCCCCAGCACAAAATACCC+CGG | + | chr8.3:21110106-21110125 | None:intergenic | 55.0% | |
| AGCTGAACGAAAGAGACGCG+TGG | + | chr8.3:21111219-21111238 | None:intergenic | 55.0% | |
| ATCACAGGAACGCAGGACCA+TGG | - | chr8.3:21110540-21110559 | MS.gene72348:CDS | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr8.3:21112505-21112524 | None:intergenic | 55.0% | |
| CACCGCCTTATCCCACTAAG+TGG | - | chr8.3:21112490-21112509 | MS.gene72348:intron | 55.0% | |
| CAGGACCATGGATCAATCCG+AGG | - | chr8.3:21110552-21110571 | MS.gene72348:CDS | 55.0% | |
| CCCCACTTAGTGGGATAAGG+CGG | + | chr8.3:21112495-21112514 | None:intergenic | 55.0% | |
| CCGCCTTATCCCACTAAGTG+GGG | - | chr8.3:21112492-21112511 | MS.gene72348:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr8.3:21112498-21112517 | None:intergenic | 55.0% | |
| GAAGGAGTAGCTCTTGGTGG+TGG | - | chr8.3:21110937-21110956 | MS.gene72348:intron | 55.0% | |
| GGCTGGTGAAGCTCATTCCA+AGG | - | chr8.3:21112109-21112128 | MS.gene72348:CDS | 55.0% | |
| TCAGTTGGCGCAATTGACCC+TGG | - | chr8.3:21112415-21112434 | MS.gene72348:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr8.3:21112504-21112523 | None:intergenic | 55.0% | |
| ! | GATCCGCAGTTTAGTTCCCG+GGG | - | chr8.3:21110086-21110105 | MS.gene72348:intron | 55.0% |
| !! | GTTCCCGGGGTATTTTGTGC+TGG | - | chr8.3:21110099-21110118 | MS.gene72348:intron | 55.0% |
| !! | TCCCGGGGTATTTTGTGCTG+GGG | - | chr8.3:21110101-21110120 | MS.gene72348:intron | 55.0% |
| CTTGTCATGCACAGGGCAGG+TGG | - | chr8.3:21111582-21111601 | MS.gene72348:intron | 60.0% | |
| GCCCCAGCACAAAATACCCC+GGG | + | chr8.3:21110105-21110124 | None:intergenic | 60.0% | |
| GGGCCCTGTAGCAGTAAGGA+TGG | - | chr8.3:21112876-21112895 | MS.gene72348:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 21109638 | 21113053 | 21109638 | ID=MS.gene72348 |
| chr8.3 | mRNA | 21109638 | 21113053 | 21109638 | ID=MS.gene72348.t1;Parent=MS.gene72348 |
| chr8.3 | exon | 21112897 | 21113053 | 21112897 | ID=MS.gene72348.t1.exon1;Parent=MS.gene72348.t1 |
| chr8.3 | CDS | 21112897 | 21113053 | 21112897 | ID=cds.MS.gene72348.t1;Parent=MS.gene72348.t1 |
| chr8.3 | exon | 21112557 | 21112726 | 21112557 | ID=MS.gene72348.t1.exon2;Parent=MS.gene72348.t1 |
| chr8.3 | CDS | 21112557 | 21112726 | 21112557 | ID=cds.MS.gene72348.t1;Parent=MS.gene72348.t1 |
| chr8.3 | exon | 21112070 | 21112144 | 21112070 | ID=MS.gene72348.t1.exon3;Parent=MS.gene72348.t1 |
| chr8.3 | CDS | 21112070 | 21112144 | 21112070 | ID=cds.MS.gene72348.t1;Parent=MS.gene72348.t1 |
| chr8.3 | exon | 21111694 | 21111784 | 21111694 | ID=MS.gene72348.t1.exon4;Parent=MS.gene72348.t1 |
| chr8.3 | CDS | 21111694 | 21111784 | 21111694 | ID=cds.MS.gene72348.t1;Parent=MS.gene72348.t1 |
| chr8.3 | exon | 21111519 | 21111570 | 21111519 | ID=MS.gene72348.t1.exon5;Parent=MS.gene72348.t1 |
| chr8.3 | CDS | 21111519 | 21111570 | 21111519 | ID=cds.MS.gene72348.t1;Parent=MS.gene72348.t1 |
| chr8.3 | exon | 21110992 | 21111095 | 21110992 | ID=MS.gene72348.t1.exon6;Parent=MS.gene72348.t1 |
| chr8.3 | CDS | 21110992 | 21111095 | 21110992 | ID=cds.MS.gene72348.t1;Parent=MS.gene72348.t1 |
| chr8.3 | exon | 21110528 | 21110604 | 21110528 | ID=MS.gene72348.t1.exon7;Parent=MS.gene72348.t1 |
| chr8.3 | CDS | 21110528 | 21110604 | 21110528 | ID=cds.MS.gene72348.t1;Parent=MS.gene72348.t1 |
| chr8.3 | exon | 21109638 | 21109814 | 21109638 | ID=MS.gene72348.t1.exon8;Parent=MS.gene72348.t1 |
| chr8.3 | CDS | 21109638 | 21109814 | 21109638 | ID=cds.MS.gene72348.t1;Parent=MS.gene72348.t1 |
| Gene Sequence |
| Protein sequence |
