Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72507.t1 | XP_024630170.1 | 65.7 | 732 | 18 | 2 | 1 | 499 | 1 | 732 | 3.00E-251 | 877.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72507.t1 | Q9SZL8 | 20.0 | 571 | 221 | 6 | 7 | 341 | 70 | 640 | 1.3e-29 | 132.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72507.t1 | A0A396JHA3 | 45.4 | 593 | 91 | 2 | 1 | 360 | 1 | 593 | 2.1e-129 | 472.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene72507.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05771 | MS.gene72507 | 0.883625 | 3.83E-71 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72507.t1 | MTR_7g074790 | 83.133 | 166 | 10 | 1 | 1 | 166 | 1 | 148 | 5.29e-92 | 280 |
| MS.gene72507.t1 | MTR_7g074790 | 92.593 | 54 | 4 | 0 | 444 | 497 | 157 | 210 | 7.19e-28 | 111 |
| MS.gene72507.t1 | MTR_5g039760 | 55.689 | 167 | 49 | 2 | 1 | 166 | 1 | 143 | 2.90e-53 | 178 |
| MS.gene72507.t1 | MTR_7g061980 | 66.387 | 119 | 40 | 0 | 1 | 119 | 1 | 119 | 2.02e-48 | 163 |
| MS.gene72507.t1 | MTR_0402s0040 | 27.974 | 454 | 277 | 13 | 10 | 445 | 26 | 447 | 5.07e-37 | 143 |
| MS.gene72507.t1 | MTR_3g058090 | 50.000 | 124 | 40 | 2 | 310 | 433 | 5 | 106 | 1.81e-27 | 106 |
| MS.gene72507.t1 | MTR_4g102720 | 36.076 | 158 | 67 | 2 | 6 | 163 | 3 | 126 | 2.81e-25 | 104 |
| MS.gene72507.t1 | MTR_5g015480 | 35.593 | 177 | 102 | 5 | 10 | 182 | 56 | 224 | 1.07e-20 | 92.0 |
| MS.gene72507.t1 | MTR_4g069880 | 58.824 | 68 | 28 | 0 | 1 | 68 | 1 | 68 | 8.17e-20 | 84.0 |
| MS.gene72507.t1 | MTR_1g019850 | 35.664 | 143 | 79 | 4 | 3 | 141 | 63 | 196 | 7.52e-17 | 80.5 |
| MS.gene72507.t1 | MTR_2g099430 | 47.674 | 86 | 43 | 2 | 35 | 119 | 28 | 112 | 9.06e-15 | 70.9 |
| MS.gene72507.t1 | MTR_6g017200 | 44.578 | 83 | 44 | 2 | 10 | 91 | 58 | 139 | 1.14e-13 | 68.9 |
| MS.gene72507.t1 | MTR_2g070590 | 40.385 | 104 | 58 | 3 | 10 | 110 | 17 | 119 | 1.23e-13 | 68.2 |
| MS.gene72507.t1 | MTR_5g045210 | 34.653 | 101 | 63 | 2 | 312 | 410 | 20 | 119 | 4.57e-13 | 68.6 |
| MS.gene72507.t1 | MTR_7g113010 | 39.370 | 127 | 61 | 3 | 10 | 134 | 457 | 569 | 1.39e-12 | 70.5 |
| MS.gene72507.t1 | MTR_6g022080 | 29.605 | 152 | 102 | 4 | 16 | 163 | 91 | 241 | 1.50e-12 | 68.2 |
| MS.gene72507.t1 | MTR_6g051425 | 26.630 | 184 | 121 | 6 | 9 | 180 | 13 | 194 | 5.59e-12 | 67.4 |
| MS.gene72507.t1 | MTR_1g070355 | 27.215 | 158 | 108 | 3 | 14 | 166 | 78 | 233 | 8.09e-12 | 68.2 |
| MS.gene72507.t1 | MTR_5g076070 | 26.738 | 187 | 123 | 4 | 13 | 193 | 56 | 234 | 2.28e-11 | 65.1 |
| MS.gene72507.t1 | MTR_1g057920 | 43.373 | 83 | 45 | 2 | 10 | 91 | 34 | 115 | 2.43e-11 | 61.6 |
| MS.gene72507.t1 | MTR_2g098880 | 35.593 | 118 | 65 | 4 | 2 | 112 | 53 | 166 | 6.31e-11 | 63.2 |
| MS.gene72507.t1 | MTR_2g098880 | 35.593 | 118 | 65 | 4 | 2 | 112 | 65 | 178 | 8.26e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72507.t1 | AT4G38180 | 34.031 | 191 | 119 | 3 | 7 | 190 | 70 | 260 | 1.14e-19 | 93.2 |
| MS.gene72507.t1 | AT4G38180 | 28.814 | 118 | 84 | 0 | 172 | 289 | 398 | 515 | 4.41e-15 | 78.6 |
| MS.gene72507.t1 | AT3G22170 | 28.261 | 184 | 123 | 3 | 170 | 346 | 381 | 562 | 3.18e-16 | 82.4 |
| MS.gene72507.t1 | AT3G22170 | 28.261 | 184 | 123 | 3 | 170 | 346 | 381 | 562 | 3.18e-16 | 82.4 |
| MS.gene72507.t1 | AT3G59470 | 40.187 | 107 | 56 | 4 | 9 | 111 | 69 | 171 | 6.62e-13 | 69.3 |
| MS.gene72507.t1 | AT3G59470 | 40.187 | 107 | 56 | 4 | 9 | 111 | 69 | 171 | 6.62e-13 | 69.3 |
| MS.gene72507.t1 | AT3G59470 | 40.187 | 107 | 56 | 4 | 9 | 111 | 81 | 183 | 7.56e-13 | 69.3 |
| MS.gene72507.t1 | AT4G15090 | 23.438 | 128 | 98 | 0 | 170 | 297 | 372 | 499 | 1.04e-12 | 71.2 |
| MS.gene72507.t1 | AT4G15090 | 29.814 | 161 | 109 | 4 | 3 | 161 | 44 | 202 | 4.81e-11 | 65.9 |
| MS.gene72507.t1 | AT4G15090 | 23.438 | 128 | 98 | 0 | 170 | 297 | 372 | 499 | 1.04e-12 | 71.2 |
| MS.gene72507.t1 | AT4G15090 | 29.814 | 161 | 109 | 4 | 3 | 161 | 44 | 202 | 4.81e-11 | 65.9 |
| MS.gene72507.t1 | AT4G15090 | 23.438 | 128 | 98 | 0 | 170 | 297 | 372 | 499 | 1.04e-12 | 71.2 |
| MS.gene72507.t1 | AT4G15090 | 29.814 | 161 | 109 | 4 | 3 | 161 | 44 | 202 | 4.81e-11 | 65.9 |
| MS.gene72507.t1 | AT4G15090 | 23.438 | 128 | 98 | 0 | 170 | 297 | 372 | 499 | 1.04e-12 | 71.2 |
| MS.gene72507.t1 | AT4G15090 | 29.814 | 161 | 109 | 4 | 3 | 161 | 44 | 202 | 4.81e-11 | 65.9 |
| MS.gene72507.t1 | AT4G15090 | 23.438 | 128 | 98 | 0 | 170 | 297 | 372 | 499 | 1.04e-12 | 71.2 |
| MS.gene72507.t1 | AT4G15090 | 29.814 | 161 | 109 | 4 | 3 | 161 | 44 | 202 | 4.81e-11 | 65.9 |
| MS.gene72507.t1 | AT5G18960 | 40.385 | 104 | 46 | 3 | 9 | 110 | 42 | 131 | 1.06e-12 | 71.2 |
| MS.gene72507.t1 | AT5G18960 | 40.385 | 104 | 46 | 3 | 9 | 110 | 42 | 131 | 1.06e-12 | 71.2 |
| MS.gene72507.t1 | AT3G06250 | 39.423 | 104 | 47 | 3 | 9 | 110 | 27 | 116 | 4.24e-12 | 69.3 |
| MS.gene72507.t1 | AT3G06250 | 41.558 | 77 | 45 | 0 | 295 | 371 | 664 | 740 | 5.42e-11 | 65.9 |
| MS.gene72507.t1 | AT3G06250 | 39.423 | 104 | 47 | 3 | 9 | 110 | 27 | 116 | 4.24e-12 | 69.3 |
| MS.gene72507.t1 | AT3G06250 | 41.558 | 77 | 45 | 0 | 295 | 371 | 664 | 740 | 5.42e-11 | 65.9 |
| MS.gene72507.t1 | AT3G06250 | 39.423 | 104 | 47 | 3 | 9 | 110 | 27 | 116 | 4.24e-12 | 69.3 |
| MS.gene72507.t1 | AT3G06250 | 41.558 | 77 | 45 | 0 | 295 | 371 | 664 | 740 | 5.42e-11 | 65.9 |
| MS.gene72507.t1 | AT4G38170 | 23.077 | 130 | 97 | 1 | 162 | 291 | 156 | 282 | 5.42e-12 | 68.6 |
| MS.gene72507.t1 | AT1G76320 | 24.476 | 143 | 106 | 1 | 181 | 321 | 320 | 462 | 1.67e-11 | 67.4 |
| MS.gene72507.t1 | AT1G76320 | 24.476 | 143 | 106 | 1 | 181 | 321 | 320 | 462 | 1.67e-11 | 67.4 |
| MS.gene72507.t1 | AT1G76320 | 24.476 | 143 | 106 | 1 | 181 | 321 | 320 | 462 | 1.67e-11 | 67.4 |
| MS.gene72507.t1 | AT1G76320 | 24.476 | 143 | 106 | 1 | 181 | 321 | 320 | 462 | 2.54e-11 | 66.6 |
Find 84 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTGTCTAAAACCGAATT+TGG | 0.140326 | 4.1:+64038749 | MS.gene72507:CDS |
| ATTACACTTTCAAGTATAAA+TGG | 0.233543 | 4.1:+64037766 | MS.gene72507:CDS |
| AGCAAGTGCATGTATGAAAT+TGG | 0.242669 | 4.1:+64038543 | MS.gene72507:CDS |
| TCAAATTTCATTCCAAGTTT+TGG | 0.248103 | 4.1:-64037532 | None:intergenic |
| CGAAATGTTTGAAGAATTGC+AGG | 0.320035 | 4.1:-64038776 | None:intergenic |
| GTCAATGAACATAATCTTCA+TGG | 0.336161 | 4.1:+64038603 | MS.gene72507:CDS |
| CTAGATTGAGCGTGTTTACT+TGG | 0.343617 | 4.1:-64039551 | None:intergenic |
| TAGAGAATTAACAACTAATA+TGG | 0.346505 | 4.1:+64039684 | MS.gene72507:CDS |
| CTTGAATCCCTTTGGTTGCA+TGG | 0.357010 | 4.1:-64039453 | None:intergenic |
| TGGCCGATGACTCTGGATTA+AGG | 0.372007 | 4.1:+64037908 | MS.gene72507:CDS |
| CTTCTTAAAATATACCTATC+AGG | 0.372035 | 4.1:-64039167 | None:intergenic |
| GTGTTACACAACTATGTTGA+TGG | 0.375026 | 4.1:+64039772 | MS.gene72507:CDS |
| CAGAATGGAATTAAACATCT+TGG | 0.376869 | 4.1:+64038480 | MS.gene72507:intron |
| GGTTGTTTCTTGAATCCCTT+TGG | 0.400183 | 4.1:-64039461 | None:intergenic |
| TGTAAGAAGTATGATACATT+TGG | 0.401457 | 4.1:+64039089 | MS.gene72507:CDS |
| AACATTTCGAAAGAGTTGTT+GGG | 0.402715 | 4.1:+64038790 | MS.gene72507:CDS |
| TGGCTTCTTCAAATGATGAT+TGG | 0.406507 | 4.1:+64037506 | MS.gene72507:CDS |
| TCTCTTGATTTAGTAGATCA+TGG | 0.415252 | 4.1:-64037825 | None:intergenic |
| TTCAAGTATAAATGGAAAGT+TGG | 0.416231 | 4.1:+64037774 | MS.gene72507:CDS |
| ATCTTGCACAATGCCACAAC+GGG | 0.416657 | 4.1:-64039204 | None:intergenic |
| GAATTAAACATCTTGGAAAC+AGG | 0.417860 | 4.1:+64038487 | MS.gene72507:CDS |
| TGAGAAAGCTTGGTTGGACT+TGG | 0.419812 | 4.1:+64038581 | MS.gene72507:CDS |
| AAACATTTCGAAAGAGTTGT+TGG | 0.420314 | 4.1:+64038789 | MS.gene72507:CDS |
| CGCTTAGTTCCCTTTGAGCC+GGG | 0.421477 | 4.1:-64039482 | None:intergenic |
| TGTTGTCTAAAACCGAATTT+GGG | 0.422476 | 4.1:+64038750 | MS.gene72507:CDS |
| ATAATCTTCATGGTTCATCT+TGG | 0.427912 | 4.1:+64038613 | MS.gene72507:CDS |
| TATACCTGTGAACTTCTTTG+AGG | 0.430697 | 4.1:-64039584 | None:intergenic |
| AATTGCAGGATACCCAAATT+CGG | 0.433675 | 4.1:-64038762 | None:intergenic |
| ATGTAGGTTTGTTTGTTGTA+AGG | 0.436082 | 4.1:+64037660 | MS.gene72507:CDS |
| TATGCTTTACGTGAGGGCTT+CGG | 0.441084 | 4.1:+64037589 | MS.gene72507:CDS |
| ATTTGAGCTGAACGATGTTA+AGG | 0.448624 | 4.1:+64039139 | MS.gene72507:CDS |
| TTAGAGTACGCTTTACAAAC+AGG | 0.450669 | 4.1:+64037614 | MS.gene72507:CDS |
| ATTCGGTTTCTAGATAACTT+AGG | 0.453820 | 4.1:-64039254 | None:intergenic |
| TCGCTTAGTTCCCTTTGAGC+CGG | 0.456094 | 4.1:-64039483 | None:intergenic |
| AAGAAACAACCCGGCTCAAA+GGG | 0.456155 | 4.1:+64039473 | MS.gene72507:CDS |
| GATGATTGGAAGCCAAAACT+TGG | 0.457457 | 4.1:+64037520 | MS.gene72507:CDS |
| ATTGATATGGCCGATGACTC+TGG | 0.457637 | 4.1:+64037901 | MS.gene72507:CDS |
| CCAATATTTGTATCATCAAA+AGG | 0.459917 | 4.1:-64039887 | None:intergenic |
| ACAAGCATATGAGATTGATA+TGG | 0.463781 | 4.1:+64037888 | MS.gene72507:CDS |
| AGACAACTAGTCTGAACATT+CGG | 0.469894 | 4.1:-64039271 | None:intergenic |
| ACATATCCTCACGTGCTAGC+GGG | 0.476750 | 4.1:-64039747 | None:intergenic |
| GATTGAGCGTGTTTACTTGG+AGG | 0.477553 | 4.1:-64039548 | None:intergenic |
| AGGTTTGTTTGTTGTAAGGA+AGG | 0.486878 | 4.1:+64037664 | MS.gene72507:CDS |
| TCATTGTCTCTACCTTGTGT+TGG | 0.489570 | 4.1:-64039398 | None:intergenic |
| TTTGTTGTAAGGAAGGAATA+CGG | 0.490669 | 4.1:+64037671 | MS.gene72507:CDS |
| ACCTGTGAACTTCTTTGAGG+TGG | 0.503799 | 4.1:-64039581 | None:intergenic |
| GCATCAGAACTCTCAAATGA+TGG | 0.506034 | 4.1:-64039431 | None:intergenic |
| ATGTTAAGGTGATTCCTGAT+AGG | 0.509691 | 4.1:+64039153 | MS.gene72507:CDS |
| GAGGATAAATGTGCATATGA+AGG | 0.510730 | 4.1:+64037700 | MS.gene72507:CDS |
| CATATCCTCACGTGCTAGCG+GGG | 0.512934 | 4.1:-64039746 | None:intergenic |
| CTTGCTTATGCTTTACGTGA+GGG | 0.518622 | 4.1:+64037583 | MS.gene72507:CDS |
| CAAGAAACAACCCGGCTCAA+AGG | 0.525961 | 4.1:+64039472 | MS.gene72507:CDS |
| ACGGTAGTGTATCGTCATGT+AGG | 0.541762 | 4.1:+64037644 | MS.gene72507:CDS |
| GGAAGGAATACGGAAGAAAG+AGG | 0.542787 | 4.1:+64037681 | MS.gene72507:CDS |
| CCTTGCTTATGCTTTACGTG+AGG | 0.544741 | 4.1:+64037582 | MS.gene72507:CDS |
| AACTTCTTTGAGGTGGGACA+CGG | 0.545922 | 4.1:-64039574 | None:intergenic |
| ATGGGCTGCATGTTATATGA+AGG | 0.546460 | 4.1:+64038665 | MS.gene72507:CDS |
| TTCTGATGCCATGCAACCAA+AGG | 0.548134 | 4.1:+64039445 | MS.gene72507:CDS |
| CAACTTATGAGCACACATGC+AGG | 0.548940 | 4.1:+64037946 | MS.gene72507:CDS |
| GAAATTTGACACTAGAGAAG+AGG | 0.556802 | 4.1:+64037546 | MS.gene72507:CDS |
| CTGCCTTAATCCAGAGTCAT+CGG | 0.562647 | 4.1:-64037911 | None:intergenic |
| GCAGGGCATAGCGCTAATGT+TGG | 0.568818 | 4.1:+64037964 | MS.gene72507:CDS |
| CTTGGAAACAGGATGAAGAA+AGG | 0.571819 | 4.1:+64038498 | MS.gene72507:CDS |
| TTAACAACTAATATGGTCGA+TGG | 0.578359 | 4.1:+64039691 | MS.gene72507:CDS |
| CCCACCTCAAAGAAGTTCAC+AGG | 0.579192 | 4.1:+64039580 | MS.gene72507:CDS |
| CCTGTGAACTTCTTTGAGGT+GGG | 0.581279 | 4.1:-64039580 | None:intergenic |
| ATGAAGGAAGCATTAACACT+TGG | 0.584329 | 4.1:+64038681 | MS.gene72507:CDS |
| TCTGATGCCATGCAACCAAA+GGG | 0.584367 | 4.1:+64039446 | MS.gene72507:CDS |
| AGTCCTCACATAAGCTTGCA+AGG | 0.585698 | 4.1:+64038847 | MS.gene72507:CDS |
| AACTTATGAGCACACATGCA+GGG | 0.596381 | 4.1:+64037947 | MS.gene72507:CDS |
| AATCTTGCACAATGCCACAA+CGG | 0.597437 | 4.1:-64039205 | None:intergenic |
| ACATTTCGAAAGAGTTGTTG+GGG | 0.600812 | 4.1:+64038791 | MS.gene72507:CDS |
| AACATATCCTCACGTGCTAG+CGG | 0.615108 | 4.1:-64039748 | None:intergenic |
| CGCTAATGTTGGATTTACAG+AGG | 0.620951 | 4.1:+64037975 | MS.gene72507:CDS |
| TGACTCTGGATTAAGGCAGA+AGG | 0.626414 | 4.1:+64037915 | MS.gene72507:CDS |
| TGTCTCTAAGTTCATTAGAG+CGG | 0.630054 | 4.1:+64039289 | MS.gene72507:CDS |
| ATATCCTCACGTGCTAGCGG+GGG | 0.659146 | 4.1:-64039745 | None:intergenic |
| TGGACAAGAGAAGCCCGTTG+TGG | 0.666264 | 4.1:+64039191 | MS.gene72507:CDS |
| CCTCACGTAAAGCATAAGCA+AGG | 0.669280 | 4.1:-64037582 | None:intergenic |
| TAATGTTGGATTTACAGAGG+TGG | 0.672534 | 4.1:+64037978 | MS.gene72507:CDS |
| TAACCTTGCAAGCTTATGTG+AGG | 0.683097 | 4.1:-64038850 | None:intergenic |
| TTTACAAACAGGAAGAAAGA+CGG | 0.687186 | 4.1:+64037625 | MS.gene72507:CDS |
| AAGGGATTCAAGAAACAACC+CGG | 0.691658 | 4.1:+64039464 | MS.gene72507:CDS |
| GTAACAGAATGTCCAACACA+AGG | 0.694581 | 4.1:+64039386 | MS.gene72507:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTGTTATTAATGT+AGG | + | chr4.1:64039862-64039881 | MS.gene72507:intron | 10.0% |
| !! | TAGAGAATTAACAACTAATA+TGG | + | chr4.1:64039684-64039703 | MS.gene72507:CDS | 20.0% |
| !!! | ATTACACTTTCAAGTATAAA+TGG | + | chr4.1:64037766-64037785 | MS.gene72507:CDS | 20.0% |
| !!! | TAATGTTGCATAATCATTTT+AGG | + | chr4.1:64039660-64039679 | MS.gene72507:intron | 20.0% |
| ! | AGACAATTCCATCATTTAAA+TGG | + | chr4.1:64038319-64038338 | MS.gene72507:intron | 25.0% |
| ! | CTTCTTAAAATATACCTATC+AGG | - | chr4.1:64039170-64039189 | None:intergenic | 25.0% |
| ! | TACAAAAAGACAAAGAAGTA+TGG | + | chr4.1:64038020-64038039 | MS.gene72507:intron | 25.0% |
| ! | TCAAACAACCATTTAAATGA+TGG | - | chr4.1:64038330-64038349 | None:intergenic | 25.0% |
| ! | TTCAAGTATAAATGGAAAGT+TGG | + | chr4.1:64037774-64037793 | MS.gene72507:CDS | 25.0% |
| !! | TCAAATTTCATTCCAAGTTT+TGG | - | chr4.1:64037535-64037554 | None:intergenic | 25.0% |
| !! | TGTAAGAAGTATGATACATT+TGG | + | chr4.1:64039089-64039108 | MS.gene72507:CDS | 25.0% |
| !!! | ATAGGTATATTTTAAGAAGG+TGG | + | chr4.1:64039171-64039190 | MS.gene72507:CDS | 25.0% |
| !!! | CTGATAGGTATATTTTAAGA+AGG | + | chr4.1:64039168-64039187 | MS.gene72507:CDS | 25.0% |
| AAAAAAAGCAAGTGGTCTAT+TGG | - | chr4.1:64038241-64038260 | None:intergenic | 30.0% | |
| AAACATTTCGAAAGAGTTGT+TGG | + | chr4.1:64038789-64038808 | MS.gene72507:CDS | 30.0% | |
| AAACCAGAAAAAAAAGCAAG+TGG | - | chr4.1:64038249-64038268 | None:intergenic | 30.0% | |
| AAATGATCGTACCTCTATAA+TGG | - | chr4.1:64038275-64038294 | None:intergenic | 30.0% | |
| AACAGATTACAAATGTGTTC+TGG | + | chr4.1:64038136-64038155 | MS.gene72507:intron | 30.0% | |
| AACATTTCGAAAGAGTTGTT+GGG | + | chr4.1:64038790-64038809 | MS.gene72507:CDS | 30.0% | |
| ACAAGCATATGAGATTGATA+TGG | + | chr4.1:64037888-64037907 | MS.gene72507:CDS | 30.0% | |
| ATAATCTTCATGGTTCATCT+TGG | + | chr4.1:64038613-64038632 | MS.gene72507:CDS | 30.0% | |
| CAAATATGATCTTGGATTAC+GGG | + | chr4.1:64038166-64038185 | MS.gene72507:intron | 30.0% | |
| CAGAATGGAATTAAACATCT+TGG | + | chr4.1:64038480-64038499 | MS.gene72507:intron | 30.0% | |
| CATCTGATATGCATAAAAGA+AGG | - | chr4.1:64038106-64038125 | None:intergenic | 30.0% | |
| CTTCTTACAACTACAAGTAA+TGG | - | chr4.1:64039078-64039097 | None:intergenic | 30.0% | |
| GAATTAAACATCTTGGAAAC+AGG | + | chr4.1:64038487-64038506 | MS.gene72507:CDS | 30.0% | |
| GCAAATATGATCTTGGATTA+CGG | + | chr4.1:64038165-64038184 | MS.gene72507:intron | 30.0% | |
| GTCAATGAACATAATCTTCA+TGG | + | chr4.1:64038603-64038622 | MS.gene72507:CDS | 30.0% | |
| GTGCATATGAAGGAAAAATT+CGG | + | chr4.1:64037710-64037729 | MS.gene72507:CDS | 30.0% | |
| TCTCTTGATTTAGTAGATCA+TGG | - | chr4.1:64037828-64037847 | None:intergenic | 30.0% | |
| TGATATGCATAAAAGAAGGA+CGG | - | chr4.1:64038102-64038121 | None:intergenic | 30.0% | |
| TTAACAACTAATATGGTCGA+TGG | + | chr4.1:64039691-64039710 | MS.gene72507:CDS | 30.0% | |
| TTTACAAACAGGAAGAAAGA+CGG | + | chr4.1:64037625-64037644 | MS.gene72507:CDS | 30.0% | |
| ! | AGAGTTAGTTTCATGTCTAA+TGG | - | chr4.1:64038982-64039001 | None:intergenic | 30.0% |
| ! | ATGTTGTCTAAAACCGAATT+TGG | + | chr4.1:64038749-64038768 | MS.gene72507:CDS | 30.0% |
| ! | ATTCGGTTTCTAGATAACTT+AGG | - | chr4.1:64039257-64039276 | None:intergenic | 30.0% |
| ! | CTTCTTTTATGCATATCAGA+TGG | + | chr4.1:64038104-64038123 | MS.gene72507:intron | 30.0% |
| ! | GAGTTAGTTTCATGTCTAAT+GGG | - | chr4.1:64038981-64039000 | None:intergenic | 30.0% |
| ! | TGTTGTCTAAAACCGAATTT+GGG | + | chr4.1:64038750-64038769 | MS.gene72507:CDS | 30.0% |
| ! | TTTGTTGTAAGGAAGGAATA+CGG | + | chr4.1:64037671-64037690 | MS.gene72507:CDS | 30.0% |
| !! | ATGTAGGTTTGTTTGTTGTA+AGG | + | chr4.1:64037660-64037679 | MS.gene72507:CDS | 30.0% |
| !! | TATAGAGGTACGATCATTTT+TGG | + | chr4.1:64038276-64038295 | MS.gene72507:intron | 30.0% |
| !!! | TTTTGGTGATGTTGTTTCAT+TGG | + | chr4.1:64038191-64038210 | MS.gene72507:intron | 30.0% |
| AATTGCAGGATACCCAAATT+CGG | - | chr4.1:64038765-64038784 | None:intergenic | 35.0% | |
| ACATTTCGAAAGAGTTGTTG+GGG | + | chr4.1:64038791-64038810 | MS.gene72507:CDS | 35.0% | |
| AGCAAGTGCATGTATGAAAT+TGG | + | chr4.1:64038543-64038562 | MS.gene72507:CDS | 35.0% | |
| ATGTTAAGGTGATTCCTGAT+AGG | + | chr4.1:64039153-64039172 | MS.gene72507:CDS | 35.0% | |
| ATTTGAGCTGAACGATGTTA+AGG | + | chr4.1:64039139-64039158 | MS.gene72507:CDS | 35.0% | |
| CGAAATGTTTGAAGAATTGC+AGG | - | chr4.1:64038779-64038798 | None:intergenic | 35.0% | |
| GAAATTTGACACTAGAGAAG+AGG | + | chr4.1:64037546-64037565 | MS.gene72507:CDS | 35.0% | |
| GAGGATAAATGTGCATATGA+AGG | + | chr4.1:64037700-64037719 | MS.gene72507:CDS | 35.0% | |
| GTGTGATGCAAATATGATCT+TGG | + | chr4.1:64038158-64038177 | MS.gene72507:intron | 35.0% | |
| GTGTTACACAACTATGTTGA+TGG | + | chr4.1:64039772-64039791 | MS.gene72507:CDS | 35.0% | |
| TAATGTTGGATTTACAGAGG+TGG | + | chr4.1:64037978-64037997 | MS.gene72507:CDS | 35.0% | |
| TATACCTGTGAACTTCTTTG+AGG | - | chr4.1:64039587-64039606 | None:intergenic | 35.0% | |
| TATGAAGGAAAAATTCGGAG+AGG | + | chr4.1:64037715-64037734 | MS.gene72507:CDS | 35.0% | |
| TCACCATTACTACTCCAAAT+GGG | + | chr4.1:64038885-64038904 | MS.gene72507:intron | 35.0% | |
| TGGCTTCTTCAAATGATGAT+TGG | + | chr4.1:64037506-64037525 | MS.gene72507:CDS | 35.0% | |
| TGTCTCTAAGTTCATTAGAG+CGG | + | chr4.1:64039289-64039308 | MS.gene72507:CDS | 35.0% | |
| TTAGAGTACGCTTTACAAAC+AGG | + | chr4.1:64037614-64037633 | MS.gene72507:CDS | 35.0% | |
| TTCACCATTACTACTCCAAA+TGG | + | chr4.1:64038884-64038903 | MS.gene72507:intron | 35.0% | |
| ! | AGACAAAGAAGTATGGTGTA+TGG | + | chr4.1:64038027-64038046 | MS.gene72507:intron | 35.0% |
| ! | AGACAACTAGTCTGAACATT+CGG | - | chr4.1:64039274-64039293 | None:intergenic | 35.0% |
| ! | ATCACTAATGAGAAGCATGA+AGG | + | chr4.1:64039017-64039036 | MS.gene72507:intron | 35.0% |
| ! | ATCTTGGATTACGGGTATTT+TGG | + | chr4.1:64038174-64038193 | MS.gene72507:intron | 35.0% |
| ! | GTATTTTCAACGACAGTTGT+TGG | + | chr4.1:64038071-64038090 | MS.gene72507:intron | 35.0% |
| ! | TCTGGTTTCAACCATTATAG+AGG | + | chr4.1:64038261-64038280 | MS.gene72507:intron | 35.0% |
| ! | TGGCATTGTGCAAGATTTTA+GGG | + | chr4.1:64039211-64039230 | MS.gene72507:CDS | 35.0% |
| !! | AAGCAGATTTTGAGAAAGCT+TGG | + | chr4.1:64038571-64038590 | MS.gene72507:CDS | 35.0% |
| !! | AGATTTTGAGAAAGCTTGGT+TGG | + | chr4.1:64038575-64038594 | MS.gene72507:CDS | 35.0% |
| !! | AGGTTTGTTTGTTGTAAGGA+AGG | + | chr4.1:64037664-64037683 | MS.gene72507:CDS | 35.0% |
| !! | ATGAAGGAAGCATTAACACT+TGG | + | chr4.1:64038681-64038700 | MS.gene72507:CDS | 35.0% |
| !!! | AGACCACTTGCTTTTTTTTC+TGG | + | chr4.1:64038243-64038262 | MS.gene72507:intron | 35.0% |
| AACTTATGAGCACACATGCA+GGG | + | chr4.1:64037947-64037966 | MS.gene72507:CDS | 40.0% | |
| AAGGGATTCAAGAAACAACC+CGG | + | chr4.1:64039464-64039483 | MS.gene72507:CDS | 40.0% | |
| AATCTTGCACAATGCCACAA+CGG | - | chr4.1:64039208-64039227 | None:intergenic | 40.0% | |
| ACCAAAGTCAAGCAATGTCT+AGG | + | chr4.1:64038400-64038419 | MS.gene72507:intron | 40.0% | |
| CCAAAGTCAAGCAATGTCTA+GGG | + | chr4.1:64038401-64038420 | MS.gene72507:intron | 40.0% | |
| CGCTAATGTTGGATTTACAG+AGG | + | chr4.1:64037975-64037994 | MS.gene72507:CDS | 40.0% | |
| CTAGATTGAGCGTGTTTACT+TGG | - | chr4.1:64039554-64039573 | None:intergenic | 40.0% | |
| CTTGCTTATGCTTTACGTGA+GGG | + | chr4.1:64037583-64037602 | MS.gene72507:CDS | 40.0% | |
| CTTGGAAACAGGATGAAGAA+AGG | + | chr4.1:64038498-64038517 | MS.gene72507:CDS | 40.0% | |
| GATGATTGGAAGCCAAAACT+TGG | + | chr4.1:64037520-64037539 | MS.gene72507:CDS | 40.0% | |
| GCATCAGAACTCTCAAATGA+TGG | - | chr4.1:64039434-64039453 | None:intergenic | 40.0% | |
| GTAACAGAATGTCCAACACA+AGG | + | chr4.1:64039386-64039405 | MS.gene72507:CDS | 40.0% | |
| GTGTGTATATCTCTCCCATT+TGG | - | chr4.1:64038902-64038921 | None:intergenic | 40.0% | |
| TAACCTTGCAAGCTTATGTG+AGG | - | chr4.1:64038853-64038872 | None:intergenic | 40.0% | |
| TCATTGTCTCTACCTTGTGT+TGG | - | chr4.1:64039401-64039420 | None:intergenic | 40.0% | |
| ! | ATGGGCTGCATGTTATATGA+AGG | + | chr4.1:64038665-64038684 | MS.gene72507:CDS | 40.0% |
| ! | GGCATTGTGCAAGATTTTAG+GGG | + | chr4.1:64039212-64039231 | MS.gene72507:CDS | 40.0% |
| ! | GTGGCATTGTGCAAGATTTT+AGG | + | chr4.1:64039210-64039229 | MS.gene72507:CDS | 40.0% |
| ! | TCTCCCATTTGGAGTAGTAA+TGG | - | chr4.1:64038891-64038910 | None:intergenic | 40.0% |
| !! | GCAAGATTTTAGGGGAAAAG+AGG | + | chr4.1:64039220-64039239 | MS.gene72507:CDS | 40.0% |
| !! | GGTTGTTTCTTGAATCCCTT+TGG | - | chr4.1:64039464-64039483 | None:intergenic | 40.0% |
| AACATATCCTCACGTGCTAG+CGG | - | chr4.1:64039751-64039770 | None:intergenic | 45.0% | |
| AAGAAACAACCCGGCTCAAA+GGG | + | chr4.1:64039473-64039492 | MS.gene72507:CDS | 45.0% | |
| AAGTGGTCTATTGGCATCGT+TGG | - | chr4.1:64038232-64038251 | None:intergenic | 45.0% | |
| ACGGTAGTGTATCGTCATGT+AGG | + | chr4.1:64037644-64037663 | MS.gene72507:CDS | 45.0% | |
| AGTCCTCACATAAGCTTGCA+AGG | + | chr4.1:64038847-64038866 | MS.gene72507:CDS | 45.0% | |
| AGTGCCATGTGCATAAACCA+TGG | - | chr4.1:64038455-64038474 | None:intergenic | 45.0% | |
| ATCTTGCACAATGCCACAAC+GGG | - | chr4.1:64039207-64039226 | None:intergenic | 45.0% | |
| ATTGATATGGCCGATGACTC+TGG | + | chr4.1:64037901-64037920 | MS.gene72507:CDS | 45.0% | |
| CAACTTATGAGCACACATGC+AGG | + | chr4.1:64037946-64037965 | MS.gene72507:CDS | 45.0% | |
| CATAAACCATGGTGAGTCTC+AGG | - | chr4.1:64038444-64038463 | None:intergenic | 45.0% | |
| CCCTAGACATTGCTTGACTT+TGG | - | chr4.1:64038404-64038423 | None:intergenic | 45.0% | |
| CCTCACGTAAAGCATAAGCA+AGG | - | chr4.1:64037585-64037604 | None:intergenic | 45.0% | |
| CCTTGCTTATGCTTTACGTG+AGG | + | chr4.1:64037582-64037601 | MS.gene72507:CDS | 45.0% | |
| CTCACCATGGTTTATGCACA+TGG | + | chr4.1:64038448-64038467 | MS.gene72507:intron | 45.0% | |
| CTGCCTTAATCCAGAGTCAT+CGG | - | chr4.1:64037914-64037933 | None:intergenic | 45.0% | |
| CTTGAATCCCTTTGGTTGCA+TGG | - | chr4.1:64039456-64039475 | None:intergenic | 45.0% | |
| GATTGAGCGTGTTTACTTGG+AGG | - | chr4.1:64039551-64039570 | None:intergenic | 45.0% | |
| GGAAGGAATACGGAAGAAAG+AGG | + | chr4.1:64037681-64037700 | MS.gene72507:CDS | 45.0% | |
| GGCATCGTTGGTACAATATG+TGG | - | chr4.1:64038220-64038239 | None:intergenic | 45.0% | |
| GGTCAGTGAAGATCGTCTTT+GGG | - | chr4.1:64038383-64038402 | None:intergenic | 45.0% | |
| TATGCTTTACGTGAGGGCTT+CGG | + | chr4.1:64037589-64037608 | MS.gene72507:CDS | 45.0% | |
| TCTGATGCCATGCAACCAAA+GGG | + | chr4.1:64039446-64039465 | MS.gene72507:CDS | 45.0% | |
| TGACTCTGGATTAAGGCAGA+AGG | + | chr4.1:64037915-64037934 | MS.gene72507:CDS | 45.0% | |
| TGAGAAAGCTTGGTTGGACT+TGG | + | chr4.1:64038581-64038600 | MS.gene72507:CDS | 45.0% | |
| TGGTCAGTGAAGATCGTCTT+TGG | - | chr4.1:64038384-64038403 | None:intergenic | 45.0% | |
| TTCTGATGCCATGCAACCAA+AGG | + | chr4.1:64039445-64039464 | MS.gene72507:CDS | 45.0% | |
| ! | ACATGGCACTTGTTGCAGAA+TGG | + | chr4.1:64038465-64038484 | MS.gene72507:intron | 45.0% |
| ! | ACCTGTGAACTTCTTTGAGG+TGG | - | chr4.1:64039584-64039603 | None:intergenic | 45.0% |
| !! | AACTTCTTTGAGGTGGGACA+CGG | - | chr4.1:64039577-64039596 | None:intergenic | 45.0% |
| !! | CCTGTGAACTTCTTTGAGGT+GGG | - | chr4.1:64039583-64039602 | None:intergenic | 45.0% |
| !!! | GGAGGAGCACTTCTTTTCTT+GGG | - | chr4.1:64039533-64039552 | None:intergenic | 45.0% |
| !!! | TGGAGGAGCACTTCTTTTCT+TGG | - | chr4.1:64039534-64039553 | None:intergenic | 45.0% |
| !! | TTATGAAATAAAAAAAAAAT+GGG | + | chr4.1:64038647-64038666 | MS.gene72507:CDS | 5.0% |
| !! | TTTATGAAATAAAAAAAAAA+TGG | + | chr4.1:64038646-64038665 | MS.gene72507:CDS | 5.0% |
| ACATATCCTCACGTGCTAGC+GGG | - | chr4.1:64039750-64039769 | None:intergenic | 50.0% | |
| CAAGAAACAACCCGGCTCAA+AGG | + | chr4.1:64039472-64039491 | MS.gene72507:CDS | 50.0% | |
| CCCACCTCAAAGAAGTTCAC+AGG | + | chr4.1:64039580-64039599 | MS.gene72507:CDS | 50.0% | |
| TCGCTTAGTTCCCTTTGAGC+CGG | - | chr4.1:64039486-64039505 | None:intergenic | 50.0% | |
| TGGCCGATGACTCTGGATTA+AGG | + | chr4.1:64037908-64037927 | MS.gene72507:CDS | 50.0% | |
| ! | AGTATGGTGTATGGTGACGC+TGG | + | chr4.1:64038036-64038055 | MS.gene72507:intron | 50.0% |
| ! | TTTTCTTGGGCTGACGCTCA+AGG | - | chr4.1:64039520-64039539 | None:intergenic | 50.0% |
| ATATCCTCACGTGCTAGCGG+GGG | - | chr4.1:64039748-64039767 | None:intergenic | 55.0% | |
| CATATCCTCACGTGCTAGCG+GGG | - | chr4.1:64039749-64039768 | None:intergenic | 55.0% | |
| CGCTTAGTTCCCTTTGAGCC+GGG | - | chr4.1:64039485-64039504 | None:intergenic | 55.0% | |
| CTAGCGGGGGCTCATAAGTT+GGG | - | chr4.1:64039735-64039754 | None:intergenic | 55.0% | |
| GCAGGGCATAGCGCTAATGT+TGG | + | chr4.1:64037964-64037983 | MS.gene72507:CDS | 55.0% | |
| GTGATGCCTGAGACTCACCA+TGG | + | chr4.1:64038435-64038454 | MS.gene72507:intron | 55.0% | |
| TAGCGGGGGCTCATAAGTTG+GGG | - | chr4.1:64039734-64039753 | None:intergenic | 55.0% | |
| TGGACAAGAGAAGCCCGTTG+TGG | + | chr4.1:64039191-64039210 | MS.gene72507:CDS | 55.0% | |
| GCTAGCGGGGGCTCATAAGT+TGG | - | chr4.1:64039736-64039755 | None:intergenic | 60.0% | |
| ! | AGCGGGGGCTCATAAGTTGG+GGG | - | chr4.1:64039733-64039752 | None:intergenic | 60.0% |
| ! | GGGCTCATAAGTTGGGGGCG+CGG | - | chr4.1:64039728-64039747 | None:intergenic | 65.0% |
| TGAGCCCCCGCTAGCACGTG+AGG | + | chr4.1:64039741-64039760 | MS.gene72507:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 64037505 | 64039894 | 64037505 | ID=MS.gene72507 |
| chr4.1 | mRNA | 64037505 | 64039894 | 64037505 | ID=MS.gene72507.t1;Parent=MS.gene72507 |
| chr4.1 | exon | 64037505 | 64038002 | 64037505 | ID=MS.gene72507.t1.exon1;Parent=MS.gene72507.t1 |
| chr4.1 | CDS | 64037505 | 64038002 | 64037505 | ID=cds.MS.gene72507.t1;Parent=MS.gene72507.t1 |
| chr4.1 | exon | 64038483 | 64038868 | 64038483 | ID=MS.gene72507.t1.exon2;Parent=MS.gene72507.t1 |
| chr4.1 | CDS | 64038483 | 64038868 | 64038483 | ID=cds.MS.gene72507.t1;Parent=MS.gene72507.t1 |
| chr4.1 | exon | 64039088 | 64039601 | 64039088 | ID=MS.gene72507.t1.exon3;Parent=MS.gene72507.t1 |
| chr4.1 | CDS | 64039088 | 64039601 | 64039088 | ID=cds.MS.gene72507.t1;Parent=MS.gene72507.t1 |
| chr4.1 | exon | 64039682 | 64039793 | 64039682 | ID=MS.gene72507.t1.exon4;Parent=MS.gene72507.t1 |
| chr4.1 | CDS | 64039682 | 64039793 | 64039682 | ID=cds.MS.gene72507.t1;Parent=MS.gene72507.t1 |
| chr4.1 | exon | 64039884 | 64039894 | 64039884 | ID=MS.gene72507.t1.exon5;Parent=MS.gene72507.t1 |
| chr4.1 | CDS | 64039884 | 64039894 | 64039884 | ID=cds.MS.gene72507.t1;Parent=MS.gene72507.t1 |
| Gene Sequence |
| Protein sequence |
