Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72693.t1 | KEH27638.1 | 93.4 | 319 | 18 | 2 | 1 | 316 | 1 | 319 | 5.80E-160 | 573.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72693.t1 | F4HWB6 | 47.1 | 312 | 135 | 2 | 1 | 312 | 89 | 370 | 1.8e-80 | 300.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72693.t1 | A0A072UEV5 | 93.4 | 319 | 18 | 2 | 1 | 316 | 1 | 319 | 4.2e-160 | 573.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054183 | MS.gene72693 | 0.840358 | 9.13E-58 | -1.69E-46 |
| MS.gene054918 | MS.gene72693 | 0.808019 | 3.80E-50 | -1.69E-46 |
| MS.gene059868 | MS.gene72693 | 0.800042 | 1.74E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72693.t1 | MTR_5g024970 | 93.417 | 319 | 18 | 2 | 1 | 316 | 1 | 319 | 0.0 | 590 |
| MS.gene72693.t1 | MTR_5g024970 | 93.968 | 315 | 16 | 2 | 1 | 312 | 1 | 315 | 0.0 | 587 |
| MS.gene72693.t1 | MTR_5g024970 | 93.968 | 315 | 16 | 2 | 1 | 312 | 1 | 315 | 0.0 | 585 |
| MS.gene72693.t1 | MTR_5g024970 | 86.550 | 342 | 16 | 3 | 1 | 312 | 1 | 342 | 0.0 | 573 |
| MS.gene72693.t1 | MTR_5g024970 | 93.939 | 297 | 15 | 2 | 1 | 294 | 1 | 297 | 0.0 | 553 |
| MS.gene72693.t1 | MTR_5g024970 | 92.803 | 264 | 16 | 2 | 1 | 261 | 1 | 264 | 5.25e-176 | 488 |
| MS.gene72693.t1 | MTR_5g024970 | 92.803 | 264 | 16 | 2 | 1 | 261 | 1 | 264 | 1.42e-175 | 487 |
| MS.gene72693.t1 | MTR_5g024970 | 91.803 | 244 | 17 | 2 | 72 | 312 | 8 | 251 | 1.56e-159 | 449 |
| MS.gene72693.t1 | MTR_8g072560 | 60.897 | 312 | 111 | 1 | 1 | 312 | 1 | 301 | 2.82e-137 | 395 |
| MS.gene72693.t1 | MTR_8g006780 | 46.984 | 315 | 157 | 3 | 1 | 312 | 1 | 308 | 2.96e-103 | 308 |
| MS.gene72693.t1 | MTR_8g006775 | 41.796 | 323 | 168 | 6 | 1 | 312 | 1 | 314 | 5.03e-87 | 267 |
| MS.gene72693.t1 | MTR_5g024660 | 40.000 | 325 | 175 | 7 | 1 | 312 | 1 | 318 | 4.03e-81 | 252 |
| MS.gene72693.t1 | MTR_5g024640 | 39.938 | 323 | 178 | 6 | 1 | 312 | 1 | 318 | 4.82e-80 | 248 |
| MS.gene72693.t1 | MTR_5g024640 | 39.938 | 323 | 178 | 6 | 1 | 312 | 1 | 318 | 1.51e-79 | 248 |
| MS.gene72693.t1 | MTR_8g073160 | 39.744 | 312 | 172 | 5 | 1 | 308 | 1 | 300 | 1.39e-74 | 234 |
| MS.gene72693.t1 | MTR_5g024640 | 39.344 | 305 | 169 | 6 | 1 | 294 | 1 | 300 | 2.93e-74 | 231 |
| MS.gene72693.t1 | MTR_8g006780 | 55.128 | 156 | 69 | 1 | 1 | 155 | 1 | 156 | 1.00e-60 | 197 |
| MS.gene72693.t1 | MTR_8g006780 | 41.176 | 102 | 60 | 0 | 211 | 312 | 137 | 238 | 7.21e-19 | 86.3 |
| MS.gene72693.t1 | MTR_5g024520 | 34.713 | 314 | 141 | 8 | 1 | 312 | 1 | 252 | 2.13e-54 | 181 |
| MS.gene72693.t1 | MTR_5g024580 | 46.988 | 166 | 87 | 1 | 1 | 165 | 1 | 166 | 5.76e-52 | 169 |
| MS.gene72693.t1 | MTR_7g074190 | 30.351 | 313 | 189 | 5 | 9 | 312 | 28 | 320 | 4.60e-43 | 153 |
| MS.gene72693.t1 | MTR_5g054950 | 28.571 | 336 | 210 | 6 | 8 | 315 | 18 | 351 | 8.16e-43 | 153 |
| MS.gene72693.t1 | MTR_1g108390 | 26.923 | 338 | 208 | 8 | 13 | 315 | 25 | 358 | 5.79e-36 | 135 |
| MS.gene72693.t1 | MTR_5g024560 | 29.878 | 164 | 108 | 4 | 155 | 312 | 35 | 197 | 8.77e-17 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72693.t1 | AT1G76520 | 45.687 | 313 | 139 | 3 | 3 | 312 | 4 | 288 | 4.78e-102 | 305 |
| MS.gene72693.t1 | AT1G76520 | 45.687 | 313 | 139 | 3 | 3 | 312 | 4 | 288 | 4.78e-102 | 305 |
| MS.gene72693.t1 | AT1G20925 | 47.604 | 313 | 132 | 3 | 1 | 312 | 89 | 370 | 1.73e-101 | 306 |
| MS.gene72693.t1 | AT5G65980 | 43.574 | 319 | 147 | 4 | 1 | 312 | 1 | 293 | 4.59e-88 | 268 |
| MS.gene72693.t1 | AT5G65980 | 43.574 | 319 | 147 | 4 | 1 | 312 | 1 | 293 | 5.79e-88 | 269 |
| MS.gene72693.t1 | AT2G17500 | 41.956 | 317 | 156 | 4 | 1 | 312 | 1 | 294 | 1.10e-85 | 263 |
| MS.gene72693.t1 | AT2G17500 | 41.956 | 317 | 156 | 4 | 1 | 312 | 1 | 294 | 1.10e-85 | 263 |
| MS.gene72693.t1 | AT2G17500 | 41.956 | 317 | 156 | 4 | 1 | 312 | 1 | 294 | 1.10e-85 | 263 |
| MS.gene72693.t1 | AT2G17500 | 41.956 | 317 | 156 | 4 | 1 | 312 | 1 | 294 | 1.10e-85 | 263 |
| MS.gene72693.t1 | AT1G76530 | 43.711 | 318 | 163 | 4 | 1 | 312 | 1 | 308 | 4.35e-77 | 241 |
| MS.gene72693.t1 | AT1G76530 | 43.711 | 318 | 163 | 4 | 1 | 312 | 1 | 308 | 4.35e-77 | 241 |
| MS.gene72693.t1 | AT1G76530 | 41.367 | 278 | 144 | 5 | 1 | 272 | 1 | 265 | 6.13e-66 | 210 |
| MS.gene72693.t1 | AT5G01990 | 29.412 | 306 | 210 | 2 | 8 | 312 | 29 | 329 | 3.53e-45 | 159 |
| MS.gene72693.t1 | AT1G71090 | 27.108 | 332 | 209 | 6 | 13 | 315 | 22 | 349 | 6.71e-40 | 145 |
Find 68 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATATGCCTCTGAAATT+TGG | 0.158249 | 5.4:-16151014 | None:intergenic |
| GAAGGTTGGCACCCATTATA+AGG | 0.252589 | 5.4:-16151392 | None:intergenic |
| GGCTTATGCTTCACTTTCTA+TGG | 0.255328 | 5.4:+16150308 | MS.gene72693:CDS |
| CCTGATGTCTGCTATCAATA+TGG | 0.257377 | 5.4:+16150282 | MS.gene72693:CDS |
| TCCAACAATAACCCTTATAA+TGG | 0.267827 | 5.4:+16151380 | MS.gene72693:CDS |
| GAAGACTCTGCTTCCATGTT+AGG | 0.267831 | 5.4:+16151267 | MS.gene72693:CDS |
| ATGGGTGCCAACCTTCTTAA+AGG | 0.277420 | 5.4:+16151399 | MS.gene72693:CDS |
| TGGTCTGATTGGTGGTAATT+TGG | 0.295476 | 5.4:+16149696 | MS.gene72693:CDS |
| CCCATTACCTTGGAGGCTTC+AGG | 0.307239 | 5.4:+16150705 | MS.gene72693:CDS |
| AAAGACAAAGGTAGTCCTTT+TGG | 0.344296 | 5.4:+16150255 | MS.gene72693:CDS |
| GATGTATGAACAGGAAATTT+AGG | 0.346379 | 5.4:+16150198 | MS.gene72693:intron |
| CCTGAAGCCTCCAAGGTAAT+GGG | 0.352521 | 5.4:-16150705 | None:intergenic |
| AAAATATGCCTCTGAAATTT+GGG | 0.358669 | 5.4:-16151013 | None:intergenic |
| ATAGCTGGAATAATGATTAT+AGG | 0.364811 | 5.4:-16150228 | None:intergenic |
| CTTGATAACATTAATTTGTT+GGG | 0.381662 | 5.4:+16149537 | MS.gene72693:CDS |
| CAGATTGTTGGATTTATTGT+TGG | 0.384088 | 5.4:+16151186 | MS.gene72693:intron |
| GTATTACTAGTCACTGGAAT+TGG | 0.385060 | 5.4:+16149501 | MS.gene72693:CDS |
| AATTTATGAACTTACATGAT+TGG | 0.386393 | 5.4:-16149580 | None:intergenic |
| CCTTTGTCTTTGCATATAGC+TGG | 0.404968 | 5.4:-16150243 | None:intergenic |
| TGAGTCTCAGCAGAAAATTC+AGG | 0.405411 | 5.4:+16150824 | MS.gene72693:CDS |
| TCCTGAAGCCTCCAAGGTAA+TGG | 0.417551 | 5.4:-16150706 | None:intergenic |
| ACTTGATAACATTAATTTGT+TGG | 0.419935 | 5.4:+16149536 | MS.gene72693:CDS |
| TCAAGAAATGTTCACAAAGA+AGG | 0.421658 | 5.4:+16150666 | MS.gene72693:CDS |
| TTATTGTTGGTGTAGTTCCT+TGG | 0.428012 | 5.4:+16151199 | MS.gene72693:CDS |
| GTGTTCAATCCTGGTCTGAT+TGG | 0.430345 | 5.4:+16149685 | MS.gene72693:CDS |
| CCCATTATAAGGGTTATTGT+TGG | 0.430983 | 5.4:-16151381 | None:intergenic |
| GTTCATGCCAGTGAACATAT+TGG | 0.431360 | 5.4:+16149855 | MS.gene72693:CDS |
| GTACATTATGTGTTCAATCC+TGG | 0.435461 | 5.4:+16149676 | MS.gene72693:CDS |
| ATAGTAGGTGTCTGTTCTGC+AGG | 0.446697 | 5.4:+16149955 | MS.gene72693:CDS |
| AAGACTCTGCTTCCATGTTA+GGG | 0.449266 | 5.4:+16151268 | MS.gene72693:CDS |
| CCAACAATAACCCTTATAAT+GGG | 0.459789 | 5.4:+16151381 | MS.gene72693:CDS |
| TGGTTACGTAGGTTAATGAT+TGG | 0.470577 | 5.4:+16151219 | MS.gene72693:CDS |
| TGTTAGGCTCAGCCTTAGGA+TGG | 0.473160 | 5.4:+16149887 | MS.gene72693:CDS |
| CATACCGCCCCAAGAGTTGC+TGG | 0.478756 | 5.4:-16151038 | None:intergenic |
| AAGGTTGGCACCCATTATAA+GGG | 0.487760 | 5.4:-16151391 | None:intergenic |
| CCATATTGATAGCAGACATC+AGG | 0.488390 | 5.4:-16150282 | None:intergenic |
| AATGTAACCAATATGTTCAC+TGG | 0.491378 | 5.4:-16149862 | None:intergenic |
| CACATAGAAGGTCTCATAGT+AGG | 0.498129 | 5.4:+16149940 | MS.gene72693:CDS |
| TATAAGGGTTATTGTTGGAA+TGG | 0.499716 | 5.4:-16151376 | None:intergenic |
| ATCAAAGTATTACTAGTCAC+TGG | 0.505619 | 5.4:+16149495 | MS.gene72693:CDS |
| GAAAATATAAGTCCAACAAA+AGG | 0.509369 | 5.4:+16150762 | MS.gene72693:CDS |
| TAGTGACCCCATTACCTTGG+AGG | 0.517400 | 5.4:+16150698 | MS.gene72693:CDS |
| CTGATGTCTGCTATCAATAT+GGG | 0.519197 | 5.4:+16150283 | MS.gene72693:CDS |
| TTCAATCCTGGTCTGATTGG+TGG | 0.521156 | 5.4:+16149688 | MS.gene72693:CDS |
| ACTAGTAATACTTTGATCAC+AGG | 0.528906 | 5.4:-16149489 | None:intergenic |
| TTTGATAATGATCCATCCTA+AGG | 0.531283 | 5.4:-16149899 | None:intergenic |
| GAGTCTTCAATCACATGAAG+AGG | 0.534955 | 5.4:-16151252 | None:intergenic |
| AAGCCTCCTAGACACATAGA+AGG | 0.535027 | 5.4:+16149928 | MS.gene72693:CDS |
| ATGAGACCTTCTATGTGTCT+AGG | 0.549972 | 5.4:-16149934 | None:intergenic |
| GATAAAATTAAGCATAAATG+TGG | 0.550997 | 5.4:+16150975 | MS.gene72693:CDS |
| ATTTGTTGGGAAAAGATGCA+AGG | 0.562343 | 5.4:+16149550 | MS.gene72693:CDS |
| CAGACATCAGGATCTCCAAA+AGG | 0.564669 | 5.4:-16150270 | None:intergenic |
| TACATCTCCTGAAGCCTCCA+AGG | 0.567379 | 5.4:-16150712 | None:intergenic |
| TTAGGCAACCCAAATTTCAG+AGG | 0.599786 | 5.4:+16151005 | MS.gene72693:CDS |
| TGTATCAGAATCACTCATAG+AGG | 0.602773 | 5.4:+16150731 | MS.gene72693:CDS |
| AAGTAGTGACCCCATTACCT+TGG | 0.603131 | 5.4:+16150695 | MS.gene72693:CDS |
| GTGTAGTTCCTTGGTTACGT+AGG | 0.608969 | 5.4:+16151208 | MS.gene72693:CDS |
| CTAGTAATACTTTGATCACA+GGG | 0.614093 | 5.4:-16149488 | None:intergenic |
| TTCACCAGCAACTCTTGGGG+CGG | 0.616074 | 5.4:+16151034 | MS.gene72693:CDS |
| CTGAAGCCTCCAAGGTAATG+GGG | 0.618635 | 5.4:-16150704 | None:intergenic |
| TTGAGATGCATACCCTAACA+TGG | 0.620373 | 5.4:-16151280 | None:intergenic |
| AGACCTTCTATGTGTCTAGG+AGG | 0.621742 | 5.4:-16149931 | None:intergenic |
| ATCATTAACCTACGTAACCA+AGG | 0.630812 | 5.4:-16151216 | None:intergenic |
| CTTATGTGTACAACATAATG+CGG | 0.631816 | 5.4:+16150637 | MS.gene72693:CDS |
| AAGTCCAACAAAAGGCAATG+TGG | 0.646470 | 5.4:+16150770 | MS.gene72693:CDS |
| CCAGCTATATGCAAAGACAA+AGG | 0.657060 | 5.4:+16150243 | MS.gene72693:CDS |
| AAATTACCACCAATCAGACC+AGG | 0.672473 | 5.4:-16149694 | None:intergenic |
| TGTCTGCTATCAATATGGGA+TGG | 0.678270 | 5.4:+16150287 | MS.gene72693:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCCTCAAAATAAAAATT+AGG | - | chr5.4:16149786-16149805 | None:intergenic | 15.0% |
| !!! | ACTTTTTGATTTTCATAATT+AGG | + | chr5.4:16149830-16149849 | MS.gene72693:intron | 15.0% |
| !!! | TTAATTCTTAAATCACATTT+TGG | + | chr5.4:16150361-16150380 | MS.gene72693:intron | 15.0% |
| !! | AAGATGCATTAAACAATAAA+CGG | - | chr5.4:16150153-16150172 | None:intergenic | 20.0% |
| !! | AATTTATGAACTTACATGAT+TGG | - | chr5.4:16149583-16149602 | None:intergenic | 20.0% |
| !! | ACTAAGTCTAATATTATGAA+AGG | - | chr5.4:16150864-16150883 | None:intergenic | 20.0% |
| !! | CTAAGTCTAATATTATGAAA+GGG | - | chr5.4:16150863-16150882 | None:intergenic | 20.0% |
| !! | GATAAAATTAAGCATAAATG+TGG | + | chr5.4:16150975-16150994 | MS.gene72693:CDS | 20.0% |
| !! | GATTTAAGAATTAATGAGAA+AGG | - | chr5.4:16150355-16150374 | None:intergenic | 20.0% |
| !! | TTATATCACTATATTTGCAT+TGG | - | chr5.4:16151108-16151127 | None:intergenic | 20.0% |
| !!! | ACTTGATAACATTAATTTGT+TGG | + | chr5.4:16149536-16149555 | MS.gene72693:CDS | 20.0% |
| !!! | ATATTGGTTACATTTTTGTT+AGG | + | chr5.4:16149871-16149890 | MS.gene72693:CDS | 20.0% |
| !!! | ATCAATCATCTTTATGATTT+TGG | + | chr5.4:16151303-16151322 | MS.gene72693:intron | 20.0% |
| !!! | ATTTTGGAATTACTTACATA+AGG | + | chr5.4:16151319-16151338 | MS.gene72693:intron | 20.0% |
| !!! | ATTTTTTACTATGTGAATCA+TGG | + | chr5.4:16150432-16150451 | MS.gene72693:intron | 20.0% |
| !!! | CTTGATAACATTAATTTGTT+GGG | + | chr5.4:16149537-16149556 | MS.gene72693:CDS | 20.0% |
| !!! | TTTTGATTTTCATAATTAGG+TGG | + | chr5.4:16149833-16149852 | MS.gene72693:intron | 20.0% |
| !!! | TTTTTTACTATGTGAATCAT+GGG | + | chr5.4:16150433-16150452 | MS.gene72693:intron | 20.0% |
| ! | AAATATTGATCCTTTCTTGT+TGG | - | chr5.4:16150928-16150947 | None:intergenic | 25.0% |
| ! | AATATGTTACTCATGAAGAA+AGG | + | chr5.4:16151135-16151154 | MS.gene72693:intron | 25.0% |
| ! | AGAAAAAAAACCAACAAGAA+AGG | + | chr5.4:16150915-16150934 | MS.gene72693:intron | 25.0% |
| ! | ATAGCTGGAATAATGATTAT+AGG | - | chr5.4:16150231-16150250 | None:intergenic | 25.0% |
| ! | GAAAATATAAGTCCAACAAA+AGG | + | chr5.4:16150762-16150781 | MS.gene72693:CDS | 25.0% |
| ! | TAGTTATGACTAAAGTCAAA+CGG | - | chr5.4:16150479-16150498 | None:intergenic | 25.0% |
| ! | TGAACTTGTACTTATTCTTT+GGG | + | chr5.4:16150582-16150601 | MS.gene72693:intron | 25.0% |
| ! | TTTATGATTGATGTATGAAC+AGG | + | chr5.4:16150189-16150208 | MS.gene72693:intron | 25.0% |
| !! | CATAAATGTGGAATGATTTT+AGG | + | chr5.4:16150987-16151006 | MS.gene72693:CDS | 25.0% |
| !!! | AAAATATGCCTCTGAAATTT+GGG | - | chr5.4:16151016-16151035 | None:intergenic | 25.0% |
| !!! | TATCTGTTTTACCTTTAAGA+AGG | - | chr5.4:16151413-16151432 | None:intergenic | 25.0% |
| !!! | TGCTCCTAATTTTTATTTTG+AGG | + | chr5.4:16149779-16149798 | MS.gene72693:intron | 25.0% |
| AATGTAACCAATATGTTCAC+TGG | - | chr5.4:16149865-16149884 | None:intergenic | 30.0% | |
| ACTAGTAATACTTTGATCAC+AGG | - | chr5.4:16149492-16149511 | None:intergenic | 30.0% | |
| ATAAAAACAGCTCCAATCTA+TGG | - | chr5.4:16150612-16150631 | None:intergenic | 30.0% | |
| CAGATTGTTGGATTTATTGT+TGG | + | chr5.4:16151186-16151205 | MS.gene72693:intron | 30.0% | |
| CCAACAATAACCCTTATAAT+GGG | + | chr5.4:16151381-16151400 | MS.gene72693:CDS | 30.0% | |
| CTAGTAATACTTTGATCACA+GGG | - | chr5.4:16149491-16149510 | None:intergenic | 30.0% | |
| CTGAACTTGTACTTATTCTT+TGG | + | chr5.4:16150581-16150600 | MS.gene72693:intron | 30.0% | |
| CTTATGTGTACAACATAATG+CGG | + | chr5.4:16150637-16150656 | MS.gene72693:CDS | 30.0% | |
| GAACTTGTACTTATTCTTTG+GGG | + | chr5.4:16150583-16150602 | MS.gene72693:intron | 30.0% | |
| GAATAAAATAACCACTCACA+AGG | - | chr5.4:16149752-16149771 | None:intergenic | 30.0% | |
| GATGTATGAACAGGAAATTT+AGG | + | chr5.4:16150198-16150217 | MS.gene72693:intron | 30.0% | |
| TAAATCCAACAATCTGCATA+AGG | - | chr5.4:16151182-16151201 | None:intergenic | 30.0% | |
| TATAAGGGTTATTGTTGGAA+TGG | - | chr5.4:16151379-16151398 | None:intergenic | 30.0% | |
| TCAAGAAATGTTCACAAAGA+AGG | + | chr5.4:16150666-16150685 | MS.gene72693:CDS | 30.0% | |
| TCCAACAATAACCCTTATAA+TGG | + | chr5.4:16151380-16151399 | MS.gene72693:CDS | 30.0% | |
| TCTAATCTTCTTATGTTTGC+AGG | + | chr5.4:16150947-16150966 | MS.gene72693:intron | 30.0% | |
| ! | ATCAAAGTATTACTAGTCAC+TGG | + | chr5.4:16149495-16149514 | MS.gene72693:CDS | 30.0% |
| ! | ATTTTCCTTATGCAGATTGT+TGG | + | chr5.4:16151174-16151193 | MS.gene72693:intron | 30.0% |
| !! | GAAAATATGCCTCTGAAATT+TGG | - | chr5.4:16151017-16151036 | None:intergenic | 30.0% |
| !! | TGTTTTACCTTTAAGAAGGT+TGG | - | chr5.4:16151409-16151428 | None:intergenic | 30.0% |
| !! | TTTGATAATGATCCATCCTA+AGG | - | chr5.4:16149902-16149921 | None:intergenic | 30.0% |
| !!! | AGATTGGAGCTGTTTTTATA+TGG | + | chr5.4:16150613-16150632 | MS.gene72693:intron | 30.0% |
| ATCATTAACCTACGTAACCA+AGG | - | chr5.4:16151219-16151238 | None:intergenic | 35.0% | |
| CCCATTATAAGGGTTATTGT+TGG | - | chr5.4:16151384-16151403 | None:intergenic | 35.0% | |
| CTGATGTCTGCTATCAATAT+GGG | + | chr5.4:16150283-16150302 | MS.gene72693:CDS | 35.0% | |
| GCATCACTGCATGTAATAAT+AGG | - | chr5.4:16151354-16151373 | None:intergenic | 35.0% | |
| GTACATTATGTGTTCAATCC+TGG | + | chr5.4:16149676-16149695 | MS.gene72693:CDS | 35.0% | |
| GTATTACTAGTCACTGGAAT+TGG | + | chr5.4:16149501-16149520 | MS.gene72693:CDS | 35.0% | |
| TAATGTTGTATCCTTGTGAG+TGG | + | chr5.4:16149738-16149757 | MS.gene72693:intron | 35.0% | |
| TGGTTACGTAGGTTAATGAT+TGG | + | chr5.4:16151219-16151238 | MS.gene72693:CDS | 35.0% | |
| TGTATCAGAATCACTCATAG+AGG | + | chr5.4:16150731-16150750 | MS.gene72693:CDS | 35.0% | |
| TTATTGTTGGTGTAGTTCCT+TGG | + | chr5.4:16151199-16151218 | MS.gene72693:CDS | 35.0% | |
| ! | AAAGACAAAGGTAGTCCTTT+TGG | + | chr5.4:16150255-16150274 | MS.gene72693:CDS | 35.0% |
| ! | ACTATGTGAATCATGGGTTA+TGG | + | chr5.4:16150439-16150458 | MS.gene72693:intron | 35.0% |
| ! | ATATTTTCACCAGCAACTCT+TGG | + | chr5.4:16151029-16151048 | MS.gene72693:CDS | 35.0% |
| ! | ATTTGTTGGGAAAAGATGCA+AGG | + | chr5.4:16149550-16149569 | MS.gene72693:CDS | 35.0% |
| ! | TATTTTCACCAGCAACTCTT+GGG | + | chr5.4:16151030-16151049 | MS.gene72693:CDS | 35.0% |
| AAATTACCACCAATCAGACC+AGG | - | chr5.4:16149697-16149716 | None:intergenic | 40.0% | |
| AAGACTCTGCTTCCATGTTA+GGG | + | chr5.4:16151268-16151287 | MS.gene72693:CDS | 40.0% | |
| AAGGTTGGCACCCATTATAA+GGG | - | chr5.4:16151394-16151413 | None:intergenic | 40.0% | |
| AAGTCCAACAAAAGGCAATG+TGG | + | chr5.4:16150770-16150789 | MS.gene72693:CDS | 40.0% | |
| ATATCGAACCTGAGACTTTG+AGG | - | chr5.4:16150050-16150069 | None:intergenic | 40.0% | |
| ATGAGACCTTCTATGTGTCT+AGG | - | chr5.4:16149937-16149956 | None:intergenic | 40.0% | |
| CACATAGAAGGTCTCATAGT+AGG | + | chr5.4:16149940-16149959 | MS.gene72693:CDS | 40.0% | |
| CCAGCTATATGCAAAGACAA+AGG | + | chr5.4:16150243-16150262 | MS.gene72693:CDS | 40.0% | |
| CCTGATGTCTGCTATCAATA+TGG | + | chr5.4:16150282-16150301 | MS.gene72693:CDS | 40.0% | |
| CCTTTGTCTTTGCATATAGC+TGG | - | chr5.4:16150246-16150265 | None:intergenic | 40.0% | |
| GAGTCTTCAATCACATGAAG+AGG | - | chr5.4:16151255-16151274 | None:intergenic | 40.0% | |
| GGCTTATGCTTCACTTTCTA+TGG | + | chr5.4:16150308-16150327 | MS.gene72693:CDS | 40.0% | |
| GTTCATGCCAGTGAACATAT+TGG | + | chr5.4:16149855-16149874 | MS.gene72693:CDS | 40.0% | |
| TGAGTCTCAGCAGAAAATTC+AGG | + | chr5.4:16150824-16150843 | MS.gene72693:CDS | 40.0% | |
| TGTCTGCTATCAATATGGGA+TGG | + | chr5.4:16150287-16150306 | MS.gene72693:CDS | 40.0% | |
| TTAGGCAACCCAAATTTCAG+AGG | + | chr5.4:16151005-16151024 | MS.gene72693:CDS | 40.0% | |
| TTGAGATGCATACCCTAACA+TGG | - | chr5.4:16151283-16151302 | None:intergenic | 40.0% | |
| ! | ATTTTCACCAGCAACTCTTG+GGG | + | chr5.4:16151031-16151050 | MS.gene72693:CDS | 40.0% |
| ! | CCATATTGATAGCAGACATC+AGG | - | chr5.4:16150285-16150304 | None:intergenic | 40.0% |
| ! | TCATCCACATTGCCTTTTGT+TGG | - | chr5.4:16150777-16150796 | None:intergenic | 40.0% |
| ! | TCTTTGGGGAAACCATAGAT+TGG | + | chr5.4:16150597-16150616 | MS.gene72693:intron | 40.0% |
| ! | TGGTCTGATTGGTGGTAATT+TGG | + | chr5.4:16149696-16149715 | MS.gene72693:CDS | 40.0% |
| ! | TTTTTGTTAGGCTCAGCCTT+AGG | + | chr5.4:16149883-16149902 | MS.gene72693:CDS | 40.0% |
| AAGCCTCCTAGACACATAGA+AGG | + | chr5.4:16149928-16149947 | MS.gene72693:CDS | 45.0% | |
| AAGTAGTGACCCCATTACCT+TGG | + | chr5.4:16150695-16150714 | MS.gene72693:CDS | 45.0% | |
| AGACCTTCTATGTGTCTAGG+AGG | - | chr5.4:16149934-16149953 | None:intergenic | 45.0% | |
| ATAGTAGGTGTCTGTTCTGC+AGG | + | chr5.4:16149955-16149974 | MS.gene72693:CDS | 45.0% | |
| ATGGGTGCCAACCTTCTTAA+AGG | + | chr5.4:16151399-16151418 | MS.gene72693:CDS | 45.0% | |
| CAGACATCAGGATCTCCAAA+AGG | - | chr5.4:16150273-16150292 | None:intergenic | 45.0% | |
| GAAGACTCTGCTTCCATGTT+AGG | + | chr5.4:16151267-16151286 | MS.gene72693:CDS | 45.0% | |
| GAAGGTTGGCACCCATTATA+AGG | - | chr5.4:16151395-16151414 | None:intergenic | 45.0% | |
| GTGTAGTTCCTTGGTTACGT+AGG | + | chr5.4:16151208-16151227 | MS.gene72693:CDS | 45.0% | |
| GTGTTCAATCCTGGTCTGAT+TGG | + | chr5.4:16149685-16149704 | MS.gene72693:CDS | 45.0% | |
| TTCAATCCTGGTCTGATTGG+TGG | + | chr5.4:16149688-16149707 | MS.gene72693:CDS | 45.0% | |
| ATGCTCCTCCTCAAAGTCTC+AGG | + | chr5.4:16150039-16150058 | MS.gene72693:intron | 50.0% | |
| CCTGAAGCCTCCAAGGTAAT+GGG | - | chr5.4:16150708-16150727 | None:intergenic | 50.0% | |
| CTGAAGCCTCCAAGGTAATG+GGG | - | chr5.4:16150707-16150726 | None:intergenic | 50.0% | |
| TACATCTCCTGAAGCCTCCA+AGG | - | chr5.4:16150715-16150734 | None:intergenic | 50.0% | |
| TAGTGACCCCATTACCTTGG+AGG | + | chr5.4:16150698-16150717 | MS.gene72693:CDS | 50.0% | |
| TCCTGAAGCCTCCAAGGTAA+TGG | - | chr5.4:16150709-16150728 | None:intergenic | 50.0% | |
| TGTTAGGCTCAGCCTTAGGA+TGG | + | chr5.4:16149887-16149906 | MS.gene72693:CDS | 50.0% | |
| ! | TCGAACCTGAGACTTTGAGG+AGG | - | chr5.4:16150047-16150066 | None:intergenic | 50.0% |
| ! | TTGAGGAGGAGCATACTCTC+AGG | - | chr5.4:16150033-16150052 | None:intergenic | 50.0% |
| CCCATTACCTTGGAGGCTTC+AGG | + | chr5.4:16150705-16150724 | MS.gene72693:CDS | 55.0% | |
| GGAGCATACTCTCAGGTCTC+AGG | - | chr5.4:16150026-16150045 | None:intergenic | 55.0% | |
| TTCACCAGCAACTCTTGGGG+CGG | + | chr5.4:16151034-16151053 | MS.gene72693:CDS | 55.0% | |
| CATACCGCCCCAAGAGTTGC+TGG | - | chr5.4:16151041-16151060 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 16149453 | 16151437 | 16149453 | ID=MS.gene72693 |
| chr5.4 | mRNA | 16149453 | 16151437 | 16149453 | ID=MS.gene72693.t1;Parent=MS.gene72693 |
| chr5.4 | exon | 16149453 | 16149587 | 16149453 | ID=MS.gene72693.t1.exon1;Parent=MS.gene72693.t1 |
| chr5.4 | CDS | 16149453 | 16149587 | 16149453 | ID=cds.MS.gene72693.t1;Parent=MS.gene72693.t1 |
| chr5.4 | exon | 16149673 | 16149752 | 16149673 | ID=MS.gene72693.t1.exon2;Parent=MS.gene72693.t1 |
| chr5.4 | CDS | 16149673 | 16149752 | 16149673 | ID=cds.MS.gene72693.t1;Parent=MS.gene72693.t1 |
| chr5.4 | exon | 16149852 | 16149976 | 16149852 | ID=MS.gene72693.t1.exon3;Parent=MS.gene72693.t1 |
| chr5.4 | CDS | 16149852 | 16149976 | 16149852 | ID=cds.MS.gene72693.t1;Parent=MS.gene72693.t1 |
| chr5.4 | exon | 16150211 | 16150332 | 16150211 | ID=MS.gene72693.t1.exon4;Parent=MS.gene72693.t1 |
| chr5.4 | CDS | 16150211 | 16150332 | 16150211 | ID=cds.MS.gene72693.t1;Parent=MS.gene72693.t1 |
| chr5.4 | exon | 16150615 | 16150845 | 16150615 | ID=MS.gene72693.t1.exon5;Parent=MS.gene72693.t1 |
| chr5.4 | CDS | 16150615 | 16150845 | 16150615 | ID=cds.MS.gene72693.t1;Parent=MS.gene72693.t1 |
| chr5.4 | exon | 16150969 | 16151055 | 16150969 | ID=MS.gene72693.t1.exon6;Parent=MS.gene72693.t1 |
| chr5.4 | CDS | 16150969 | 16151055 | 16150969 | ID=cds.MS.gene72693.t1;Parent=MS.gene72693.t1 |
| chr5.4 | exon | 16151189 | 16151289 | 16151189 | ID=MS.gene72693.t1.exon7;Parent=MS.gene72693.t1 |
| chr5.4 | CDS | 16151189 | 16151289 | 16151189 | ID=cds.MS.gene72693.t1;Parent=MS.gene72693.t1 |
| chr5.4 | exon | 16151368 | 16151437 | 16151368 | ID=MS.gene72693.t1.exon8;Parent=MS.gene72693.t1 |
| chr5.4 | CDS | 16151368 | 16151437 | 16151368 | ID=cds.MS.gene72693.t1;Parent=MS.gene72693.t1 |
| Gene Sequence |
| Protein sequence |
