Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72927.t1 | XP_013457536.1 | 99.2 | 254 | 2 | 0 | 1 | 254 | 1 | 254 | 2.60E-142 | 514.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72927.t1 | Q850K7 | 64.4 | 247 | 81 | 3 | 9 | 252 | 11 | 253 | 1.1e-88 | 327.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72927.t1 | A0A072UPE6 | 99.2 | 254 | 2 | 0 | 1 | 254 | 1 | 254 | 1.9e-142 | 514.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051064 | MS.gene72927 | 0.807737 | 4.37E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72927.t1 | MTR_4g098930 | 99.213 | 254 | 2 | 0 | 1 | 254 | 1 | 254 | 0.0 | 523 |
| MS.gene72927.t1 | MTR_4g099370 | 41.036 | 251 | 140 | 2 | 3 | 253 | 9 | 251 | 2.03e-66 | 206 |
| MS.gene72927.t1 | MTR_5g013440 | 41.803 | 244 | 139 | 2 | 10 | 253 | 12 | 252 | 2.00e-63 | 199 |
| MS.gene72927.t1 | MTR_4g075790 | 41.026 | 234 | 131 | 5 | 23 | 254 | 17 | 245 | 7.10e-61 | 192 |
| MS.gene72927.t1 | MTR_4g099400 | 41.176 | 170 | 99 | 1 | 82 | 251 | 10 | 178 | 1.20e-43 | 146 |
| MS.gene72927.t1 | MTR_4g075790 | 40.230 | 174 | 100 | 3 | 82 | 254 | 9 | 179 | 1.24e-42 | 144 |
| MS.gene72927.t1 | MTR_0809s0010 | 36.564 | 227 | 126 | 7 | 29 | 246 | 47 | 264 | 1.09e-37 | 133 |
| MS.gene72927.t1 | MTR_0118s0070 | 37.054 | 224 | 127 | 9 | 34 | 248 | 53 | 271 | 5.88e-32 | 118 |
| MS.gene72927.t1 | MTR_4g028640 | 34.894 | 235 | 130 | 10 | 27 | 250 | 40 | 262 | 2.16e-31 | 117 |
| MS.gene72927.t1 | MTR_2g090270 | 33.484 | 221 | 135 | 7 | 34 | 248 | 40 | 254 | 2.11e-30 | 114 |
| MS.gene72927.t1 | MTR_2g090265 | 33.032 | 221 | 136 | 7 | 34 | 248 | 38 | 252 | 2.95e-30 | 114 |
| MS.gene72927.t1 | MTR_0122s0020 | 31.674 | 221 | 139 | 7 | 34 | 248 | 46 | 260 | 1.46e-26 | 104 |
| MS.gene72927.t1 | MTR_0122s0020 | 34.545 | 165 | 101 | 4 | 34 | 193 | 46 | 208 | 5.93e-25 | 98.6 |
| MS.gene72927.t1 | MTR_7g011060 | 29.644 | 253 | 151 | 12 | 3 | 246 | 1 | 235 | 2.74e-19 | 84.3 |
| MS.gene72927.t1 | MTR_1g085460 | 29.915 | 234 | 142 | 10 | 31 | 251 | 32 | 256 | 8.43e-16 | 75.1 |
| MS.gene72927.t1 | MTR_3g435430 | 28.099 | 242 | 139 | 11 | 27 | 251 | 23 | 246 | 1.05e-15 | 74.7 |
| MS.gene72927.t1 | MTR_7g111010 | 27.170 | 265 | 167 | 11 | 1 | 251 | 1 | 253 | 5.63e-15 | 72.8 |
| MS.gene72927.t1 | MTR_4g081950 | 28.631 | 241 | 137 | 11 | 29 | 252 | 61 | 283 | 7.83e-15 | 72.8 |
| MS.gene72927.t1 | MTR_7g110990 | 29.060 | 234 | 142 | 10 | 32 | 251 | 15 | 238 | 9.05e-15 | 72.0 |
| MS.gene72927.t1 | MTR_8g464350 | 26.054 | 261 | 158 | 12 | 7 | 248 | 6 | 250 | 2.20e-14 | 71.2 |
| MS.gene72927.t1 | MTR_8g058990 | 25.000 | 252 | 155 | 11 | 13 | 247 | 14 | 248 | 2.89e-14 | 70.9 |
| MS.gene72927.t1 | MTR_3g094040 | 27.652 | 264 | 153 | 13 | 3 | 249 | 9 | 251 | 1.32e-13 | 68.9 |
| MS.gene72927.t1 | MTR_4g102450 | 26.966 | 267 | 159 | 10 | 1 | 250 | 12 | 259 | 1.34e-13 | 68.9 |
| MS.gene72927.t1 | MTR_7g013150 | 26.415 | 265 | 162 | 11 | 1 | 248 | 1 | 249 | 1.56e-13 | 68.6 |
| MS.gene72927.t1 | MTR_7g013120 | 26.136 | 264 | 162 | 12 | 1 | 247 | 1 | 248 | 2.36e-13 | 68.2 |
| MS.gene72927.t1 | MTR_5g041700 | 28.077 | 260 | 148 | 12 | 6 | 246 | 3 | 242 | 5.78e-13 | 67.0 |
| MS.gene72927.t1 | MTR_3g094060 | 28.017 | 232 | 133 | 11 | 32 | 246 | 34 | 248 | 1.12e-12 | 66.2 |
| MS.gene72927.t1 | MTR_6g012520 | 28.194 | 227 | 137 | 10 | 29 | 246 | 28 | 237 | 1.10e-11 | 63.2 |
| MS.gene72927.t1 | MTR_3g466790 | 24.151 | 265 | 163 | 13 | 1 | 247 | 6 | 250 | 1.52e-11 | 63.2 |
| MS.gene72927.t1 | MTR_7g013140 | 25.758 | 264 | 161 | 12 | 1 | 247 | 1 | 246 | 5.59e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72927.t1 | AT4G17030 | 43.320 | 247 | 132 | 4 | 5 | 250 | 8 | 247 | 8.65e-60 | 189 |
| MS.gene72927.t1 | AT4G38400 | 42.157 | 204 | 113 | 4 | 52 | 252 | 47 | 248 | 4.32e-53 | 173 |
| MS.gene72927.t1 | AT3G45970 | 40.284 | 211 | 116 | 6 | 48 | 252 | 15 | 221 | 2.71e-51 | 167 |
| MS.gene72927.t1 | AT3G45970 | 36.255 | 251 | 146 | 8 | 8 | 252 | 6 | 248 | 1.75e-48 | 161 |
| MS.gene72927.t1 | AT3G45960 | 36.275 | 204 | 125 | 4 | 52 | 252 | 46 | 247 | 3.09e-46 | 155 |
| MS.gene72927.t1 | AT3G45960 | 37.629 | 194 | 116 | 4 | 62 | 252 | 8 | 199 | 5.78e-46 | 153 |
| MS.gene72927.t1 | AT1G65680 | 35.223 | 247 | 138 | 10 | 16 | 250 | 35 | 271 | 1.05e-31 | 118 |
| MS.gene72927.t1 | AT1G65681 | 30.841 | 214 | 135 | 6 | 44 | 250 | 13 | 220 | 5.81e-29 | 109 |
| MS.gene72927.t1 | AT3G60570 | 27.925 | 265 | 161 | 12 | 2 | 250 | 5 | 255 | 7.74e-28 | 107 |
| MS.gene72927.t1 | AT2G45110 | 31.061 | 264 | 157 | 10 | 1 | 248 | 1 | 255 | 3.73e-27 | 105 |
| MS.gene72927.t1 | AT2G20750 | 30.472 | 233 | 140 | 8 | 29 | 248 | 40 | 263 | 5.03e-26 | 103 |
| MS.gene72927.t1 | AT4G28250 | 29.344 | 259 | 164 | 11 | 1 | 248 | 6 | 256 | 3.63e-25 | 100 |
| MS.gene72927.t1 | AT3G60570 | 29.439 | 214 | 129 | 10 | 48 | 250 | 5 | 207 | 3.00e-24 | 97.1 |
| MS.gene72927.t1 | AT2G20750 | 34.756 | 164 | 89 | 6 | 34 | 185 | 45 | 202 | 1.37e-22 | 92.8 |
| MS.gene72927.t1 | AT4G28250 | 28.571 | 259 | 160 | 12 | 1 | 248 | 6 | 250 | 7.61e-21 | 89.0 |
| MS.gene72927.t1 | AT4G28250 | 29.651 | 172 | 108 | 5 | 34 | 200 | 41 | 204 | 7.07e-18 | 79.7 |
| MS.gene72927.t1 | AT4G28250 | 28.788 | 198 | 124 | 7 | 1 | 190 | 6 | 194 | 2.15e-17 | 78.6 |
| MS.gene72927.t1 | AT5G39290 | 29.707 | 239 | 132 | 12 | 29 | 250 | 58 | 277 | 2.37e-17 | 79.7 |
| MS.gene72927.t1 | AT4G01630 | 26.336 | 262 | 166 | 10 | 3 | 250 | 5 | 253 | 4.00e-17 | 78.6 |
| MS.gene72927.t1 | AT1G69530 | 27.444 | 266 | 160 | 9 | 3 | 252 | 1 | 249 | 5.29e-17 | 78.2 |
| MS.gene72927.t1 | AT1G69530 | 27.444 | 266 | 160 | 9 | 3 | 252 | 1 | 249 | 5.29e-17 | 78.2 |
| MS.gene72927.t1 | AT1G69530 | 27.308 | 260 | 157 | 8 | 3 | 246 | 1 | 244 | 8.04e-17 | 78.2 |
| MS.gene72927.t1 | AT5G39270 | 28.692 | 237 | 137 | 10 | 29 | 250 | 58 | 277 | 3.32e-16 | 76.6 |
| MS.gene72927.t1 | AT3G29030 | 27.444 | 266 | 151 | 11 | 9 | 249 | 3 | 251 | 1.34e-15 | 74.7 |
| MS.gene72927.t1 | AT2G40610 | 29.344 | 259 | 146 | 12 | 9 | 249 | 12 | 251 | 1.37e-15 | 74.3 |
| MS.gene72927.t1 | AT5G56320 | 29.787 | 235 | 131 | 11 | 29 | 246 | 29 | 246 | 2.64e-15 | 73.6 |
| MS.gene72927.t1 | AT5G56320 | 29.787 | 235 | 131 | 11 | 29 | 246 | 29 | 246 | 2.64e-15 | 73.6 |
| MS.gene72927.t1 | AT5G56320 | 29.787 | 235 | 131 | 11 | 29 | 246 | 29 | 246 | 3.70e-15 | 73.9 |
| MS.gene72927.t1 | AT2G03090 | 27.273 | 264 | 157 | 11 | 1 | 246 | 1 | 247 | 7.84e-15 | 72.4 |
| MS.gene72927.t1 | AT5G05290 | 25.191 | 262 | 165 | 8 | 4 | 249 | 7 | 253 | 1.34e-14 | 71.6 |
| MS.gene72927.t1 | AT1G69530 | 30.000 | 160 | 88 | 4 | 3 | 146 | 1 | 152 | 1.45e-14 | 71.6 |
| MS.gene72927.t1 | AT1G69530 | 30.000 | 160 | 88 | 4 | 3 | 146 | 1 | 152 | 1.56e-14 | 70.9 |
| MS.gene72927.t1 | AT1G26770 | 27.004 | 237 | 141 | 8 | 29 | 249 | 36 | 256 | 5.46e-14 | 70.1 |
| MS.gene72927.t1 | AT1G26770 | 27.004 | 237 | 141 | 8 | 29 | 249 | 26 | 246 | 7.40e-14 | 69.7 |
| MS.gene72927.t1 | AT5G39280 | 28.085 | 235 | 135 | 11 | 32 | 250 | 57 | 273 | 1.18e-13 | 69.3 |
| MS.gene72927.t1 | AT5G39300 | 27.234 | 235 | 137 | 11 | 32 | 250 | 58 | 274 | 8.27e-13 | 67.0 |
| MS.gene72927.t1 | AT1G12560 | 27.660 | 235 | 135 | 11 | 32 | 248 | 40 | 257 | 5.02e-12 | 64.7 |
| MS.gene72927.t1 | AT1G20190 | 28.017 | 232 | 144 | 10 | 33 | 251 | 30 | 251 | 1.05e-11 | 63.5 |
| MS.gene72927.t1 | AT5G39260 | 28.137 | 263 | 150 | 14 | 7 | 247 | 12 | 257 | 1.16e-11 | 63.5 |
| MS.gene72927.t1 | AT5G39310 | 27.155 | 232 | 138 | 10 | 34 | 250 | 95 | 310 | 2.44e-11 | 63.2 |
Find 56 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTTGGTGCTACTATTAA+TGG | 0.182330 | 8.2:-23272070 | MS.gene72927:CDS |
| CGAGTGGACCTCTGACTTTA+AGG | 0.275810 | 8.2:-23270823 | MS.gene72927:CDS |
| TACCCAAACTCTGAAGAAAA+TGG | 0.276619 | 8.2:-23272216 | MS.gene72927:CDS |
| TCAGCTGGTGCATGTGGATT+TGG | 0.335177 | 8.2:-23272094 | MS.gene72927:intron |
| TTAATAACATACCAGAAAAC+TGG | 0.365399 | 8.2:-23270754 | MS.gene72927:CDS |
| GCATGTGGATTTGGTTCCTT+TGG | 0.368760 | 8.2:-23272085 | MS.gene72927:CDS |
| CAGCAGCAATCCTCATTACT+TGG | 0.374855 | 8.2:-23271321 | MS.gene72927:CDS |
| GCCACTTCTCTATTAGCTCT+TGG | 0.398126 | 8.2:-23271675 | MS.gene72927:CDS |
| ATCGGGATCATGGCGCAGTC+TGG | 0.433963 | 8.2:-23270862 | MS.gene72927:CDS |
| TTGTCTGCAAGTTACTGAAT+CGG | 0.443111 | 8.2:-23270880 | MS.gene72927:CDS |
| ACCAACAGTGTTTATTGCTC+AGG | 0.451315 | 8.2:-23271801 | MS.gene72927:CDS |
| TGTCTGCAAGTTACTGAATC+GGG | 0.467993 | 8.2:-23270879 | MS.gene72927:CDS |
| ATGTTGTTTAGTACTGAAGA+TGG | 0.475387 | 8.2:-23270800 | MS.gene72927:CDS |
| TTGGTGCTACTATTAATGGT+GGG | 0.486435 | 8.2:-23272066 | MS.gene72927:CDS |
| TGGCTGTGGCGCTTGTTACC+AGG | 0.495163 | 8.2:-23272005 | MS.gene72927:intron |
| TATCGAGATGGAGTTGGCTG+TGG | 0.504204 | 8.2:-23272019 | MS.gene72927:CDS |
| ATACCAGAAAACTGGAAGGC+TGG | 0.508235 | 8.2:-23270746 | MS.gene72927:CDS |
| TATTAATGGTGGGGATGTAT+CGG | 0.511398 | 8.2:-23272056 | MS.gene72927:CDS |
| CTGAAGATGGAGAAGATACA+TGG | 0.511542 | 8.2:-23270787 | MS.gene72927:CDS |
| TTTGGTGCTACTATTAATGG+TGG | 0.523991 | 8.2:-23272067 | MS.gene72927:CDS |
| TCTTATGGTTTCAACAAGGA+AGG | 0.526309 | 8.2:-23271292 | MS.gene72927:CDS |
| GCTCTGAGCCATCCCACTGA+AGG | 0.529367 | 8.2:+23271707 | None:intergenic |
| AAGTTACTGAATCGGGATCA+TGG | 0.530799 | 8.2:-23270872 | MS.gene72927:CDS |
| AGTCTTTATCGAGATGGAGT+TGG | 0.533818 | 8.2:-23272025 | MS.gene72927:CDS |
| CCGTGCATGAAGTATCTGCT+AGG | 0.547466 | 8.2:+23272268 | None:intergenic |
| TTCAATTCAGCTGGTGCATG+TGG | 0.563025 | 8.2:-23272100 | MS.gene72927:intron |
| GCATCTAGTCTTTATCGAGA+TGG | 0.564142 | 8.2:-23272031 | MS.gene72927:CDS |
| AAGACAAAAGCCAAGTAATG+AGG | 0.564537 | 8.2:+23271311 | None:intergenic |
| AGTGTTTATTGCTCAGGCAA+CGG | 0.564581 | 8.2:-23271795 | MS.gene72927:CDS |
| CCATCCCACTGAAGGCTCGT+TGG | 0.571650 | 8.2:+23271715 | None:intergenic |
| CTTAGCCAACGAGCCTTCAG+TGG | 0.574950 | 8.2:-23271720 | MS.gene72927:CDS |
| TTGCTCAGGCAACGGTGTCA+CGG | 0.576990 | 8.2:-23271787 | MS.gene72927:CDS |
| ACCAAGAGCTAATAGAGAAG+TGG | 0.578632 | 8.2:+23271674 | None:intergenic |
| CAGTGGGATGGCTCAGAGCA+AGG | 0.580727 | 8.2:-23271703 | MS.gene72927:CDS |
| TATGGTTTCAACAAGGAAGG+AGG | 0.586212 | 8.2:-23271289 | MS.gene72927:CDS |
| CAGAGGTCCACTCGGTGGAG+AGG | 0.586885 | 8.2:+23270832 | None:intergenic |
| CGTGCATGAAGTATCTGCTA+GGG | 0.588324 | 8.2:+23272269 | None:intergenic |
| TAGGGTTTGCATGAAAAGAA+AGG | 0.589727 | 8.2:+23272287 | None:intergenic |
| TGGTGCTACTATTAATGGTG+GGG | 0.595103 | 8.2:-23272065 | MS.gene72927:CDS |
| GCTGGAGACACGTATGACTC+AGG | 0.595961 | 8.2:-23270728 | MS.gene72927:CDS |
| ACCATTAATAGTAGCACCAA+AGG | 0.596692 | 8.2:+23272069 | None:intergenic |
| ATGGTTTCAACAAGGAAGGA+GGG | 0.609790 | 8.2:-23271288 | MS.gene72927:CDS |
| CTTAAAGTCAGAGGTCCACT+CGG | 0.610489 | 8.2:+23270824 | None:intergenic |
| GCCTGAGCAATAAACACTGT+TGG | 0.617408 | 8.2:+23271800 | None:intergenic |
| AACAACATCCTTAAAGTCAG+AGG | 0.617433 | 8.2:+23270815 | None:intergenic |
| TTAGCCAACGAGCCTTCAGT+GGG | 0.618388 | 8.2:-23271719 | MS.gene72927:CDS |
| CCAACGAGCCTTCAGTGGGA+TGG | 0.622367 | 8.2:-23271715 | MS.gene72927:CDS |
| CCTAGCAGATACTTCATGCA+CGG | 0.630897 | 8.2:-23272268 | MS.gene72927:CDS |
| TCGTTGGCTAAGAATGAAGT+CGG | 0.641482 | 8.2:+23271731 | None:intergenic |
| AACTGCTGTGCAGCTCTGCG+AGG | 0.656781 | 8.2:-23271261 | MS.gene72927:intron |
| TAACATACCAGAAAACTGGA+AGG | 0.663849 | 8.2:-23270750 | MS.gene72927:CDS |
| TAGTTAATATTGAATACAGA+CGG | 0.665226 | 8.2:-23271650 | MS.gene72927:intron |
| GGTTTGCATGAAAAGAAAGG+TGG | 0.670977 | 8.2:+23272290 | None:intergenic |
| ACTTCTACCTCTCCACCGAG+TGG | 0.678558 | 8.2:-23270839 | MS.gene72927:CDS |
| AAAGTCAGAGGTCCACTCGG+TGG | 0.693232 | 8.2:+23270827 | None:intergenic |
| TTTGTCTTATGGTTTCAACA+AGG | 0.712343 | 8.2:-23271296 | MS.gene72927:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTCTAAATTTAATTATTT+GGG | + | chr8.2:23271953-23271972 | None:intergenic | 10.0% |
| !! | CTCTTCTAAATTTAATTATT+TGG | + | chr8.2:23271954-23271973 | None:intergenic | 15.0% |
| !!! | TAATTGTAATGTTTTTGTTT+GGG | + | chr8.2:23271679-23271698 | None:intergenic | 15.0% |
| !!! | TTAATTGTAATGTTTTTGTT+TGG | + | chr8.2:23271680-23271699 | None:intergenic | 15.0% |
| !! | ATAAACTAAAACTTTCGAAT+AGG | - | chr8.2:23271851-23271870 | MS.gene72927:intron | 20.0% |
| !! | ATTATATGTAAACATAACCA+AGG | - | chr8.2:23271618-23271637 | MS.gene72927:intron | 20.0% |
| !! | TAGTTAATATTGAATACAGA+CGG | - | chr8.2:23271383-23271402 | MS.gene72927:intron | 20.0% |
| !!! | ATTTTTCATTATTCTTTGAC+AGG | - | chr8.2:23271201-23271220 | MS.gene72927:intron | 20.0% |
| !!! | TTCGAAAGTTTTAGTTTATT+TGG | + | chr8.2:23271850-23271869 | None:intergenic | 20.0% |
| ! | AAAATTGATGCATGGAAAAA+AGG | + | chr8.2:23271588-23271607 | None:intergenic | 25.0% |
| ! | AAACGTAAAAAATTGATGCA+TGG | + | chr8.2:23271596-23271615 | None:intergenic | 25.0% |
| ! | AAACTTTCGAATAGGTTATT+TGG | - | chr8.2:23271859-23271878 | MS.gene72927:intron | 25.0% |
| ! | AGTTTATTTGTGAATGTCAA+AGG | + | chr8.2:23271131-23271150 | None:intergenic | 25.0% |
| ! | TTAATAACATACCAGAAAAC+TGG | - | chr8.2:23272279-23272298 | MS.gene72927:CDS | 25.0% |
| !!! | TTAGTTTCAAGTTTCAACAT+AGG | + | chr8.2:23271920-23271939 | None:intergenic | 25.0% |
| !!! | TTTTCTGGTATGTTATTAAC+AGG | + | chr8.2:23272278-23272297 | None:intergenic | 25.0% |
| AGTTATTGTCGTATGAAAAC+TGG | - | chr8.2:23271465-23271484 | MS.gene72927:intron | 30.0% | |
| CAAGTTTCAACATAGGAAAT+CGG | + | chr8.2:23271913-23271932 | None:intergenic | 30.0% | |
| TAGAGAAAACTAAGAACGAA+AGG | - | chr8.2:23272066-23272085 | MS.gene72927:CDS | 30.0% | |
| TATTCAACTCTTGATTCAAC+TGG | - | chr8.2:23272007-23272026 | MS.gene72927:CDS | 30.0% | |
| TTTGTCTTATGGTTTCAACA+AGG | - | chr8.2:23271737-23271756 | MS.gene72927:CDS | 30.0% | |
| ! | AAGACATTTTTCACATGTAG+TGG | + | chr8.2:23271983-23272002 | None:intergenic | 30.0% |
| ! | ATGTTGTTTAGTACTGAAGA+TGG | - | chr8.2:23272233-23272252 | MS.gene72927:CDS | 30.0% |
| ! | TCTTTTGAATTCAATTCAGC+TGG | - | chr8.2:23270924-23270943 | MS.gene72927:intron | 30.0% |
| !! | ATTACTTGGCTTTTGTCTTA+TGG | - | chr8.2:23271726-23271745 | MS.gene72927:CDS | 30.0% |
| AACAACATCCTTAAAGTCAG+AGG | + | chr8.2:23272221-23272240 | None:intergenic | 35.0% | |
| AAGACAAAAGCCAAGTAATG+AGG | + | chr8.2:23271725-23271744 | None:intergenic | 35.0% | |
| ACCATTAATAGTAGCACCAA+AGG | + | chr8.2:23270967-23270986 | None:intergenic | 35.0% | |
| ACTCATTGCAGATGTATCAT+CGG | + | chr8.2:23271517-23271536 | None:intergenic | 35.0% | |
| TAACATACCAGAAAACTGGA+AGG | - | chr8.2:23272283-23272302 | MS.gene72927:CDS | 35.0% | |
| TAGGGTTTGCATGAAAAGAA+AGG | + | chr8.2:23270749-23270768 | None:intergenic | 35.0% | |
| TCATTATTCTTTGACAGGTG+AGG | - | chr8.2:23271206-23271225 | MS.gene72927:intron | 35.0% | |
| TCTTATGGTTTCAACAAGGA+AGG | - | chr8.2:23271741-23271760 | MS.gene72927:CDS | 35.0% | |
| TTGTCTGCAAGTTACTGAAT+CGG | - | chr8.2:23272153-23272172 | MS.gene72927:intron | 35.0% | |
| ! | TACCCAAACTCTGAAGAAAA+TGG | - | chr8.2:23270817-23270836 | MS.gene72927:CDS | 35.0% |
| ! | TATTAATGGTGGGGATGTAT+CGG | - | chr8.2:23270977-23270996 | MS.gene72927:intron | 35.0% |
| !! | TCCTTTGGTGCTACTATTAA+TGG | - | chr8.2:23270963-23270982 | MS.gene72927:intron | 35.0% |
| !! | TTGGTGCTACTATTAATGGT+GGG | - | chr8.2:23270967-23270986 | MS.gene72927:intron | 35.0% |
| !! | TTTGGTGCTACTATTAATGG+TGG | - | chr8.2:23270966-23270985 | MS.gene72927:intron | 35.0% |
| !!! | ACGGTAGTTTTAACTGATCA+AGG | - | chr8.2:23271265-23271284 | MS.gene72927:CDS | 35.0% |
| !!! | TGCCATTTTCTTCAGAGTTT+GGG | + | chr8.2:23270822-23270841 | None:intergenic | 35.0% |
| AAGTTACTGAATCGGGATCA+TGG | - | chr8.2:23272161-23272180 | MS.gene72927:intron | 40.0% | |
| ACCAACAGTGTTTATTGCTC+AGG | - | chr8.2:23271232-23271251 | MS.gene72927:intron | 40.0% | |
| ACCAAGAGCTAATAGAGAAG+TGG | + | chr8.2:23271362-23271381 | None:intergenic | 40.0% | |
| AGTCTTTATCGAGATGGAGT+TGG | - | chr8.2:23271008-23271027 | MS.gene72927:intron | 40.0% | |
| AGTGTTTATTGCTCAGGCAA+CGG | - | chr8.2:23271238-23271257 | MS.gene72927:intron | 40.0% | |
| ATGGTTTCAACAAGGAAGGA+GGG | - | chr8.2:23271745-23271764 | MS.gene72927:CDS | 40.0% | |
| CACAAACTACAACTTATCGC+AGG | + | chr8.2:23271816-23271835 | None:intergenic | 40.0% | |
| CTGAAGATGGAGAAGATACA+TGG | - | chr8.2:23272246-23272265 | MS.gene72927:CDS | 40.0% | |
| CTTCACCATGGTAAGATCTA+GGG | + | chr8.2:23271549-23271568 | None:intergenic | 40.0% | |
| GATGCATGGAAAAAAGGACA+TGG | + | chr8.2:23271582-23271601 | None:intergenic | 40.0% | |
| GGTTTGCATGAAAAGAAAGG+TGG | + | chr8.2:23270746-23270765 | None:intergenic | 40.0% | |
| TATGGTTTCAACAAGGAAGG+AGG | - | chr8.2:23271744-23271763 | MS.gene72927:CDS | 40.0% | |
| TGTATAGATGTGTTGTCACC+TGG | + | chr8.2:23271049-23271068 | None:intergenic | 40.0% | |
| TGTCTGCAAGTTACTGAATC+GGG | - | chr8.2:23272154-23272173 | MS.gene72927:intron | 40.0% | |
| ! | CTTTTCCCTAGATCTTACCA+TGG | - | chr8.2:23271541-23271560 | MS.gene72927:intron | 40.0% |
| ! | GCATCTAGTCTTTATCGAGA+TGG | - | chr8.2:23271002-23271021 | MS.gene72927:intron | 40.0% |
| ! | TCGTTGGCTAAGAATGAAGT+CGG | + | chr8.2:23271305-23271324 | None:intergenic | 40.0% |
| !! | TGGTGCTACTATTAATGGTG+GGG | - | chr8.2:23270968-23270987 | MS.gene72927:intron | 40.0% |
| !!! | GTGCCATTTTCTTCAGAGTT+TGG | + | chr8.2:23270823-23270842 | None:intergenic | 40.0% |
| !!! | GTTTTAACTGATCAAGGCTC+AGG | - | chr8.2:23271271-23271290 | MS.gene72927:CDS | 40.0% |
| ATACCAGAAAACTGGAAGGC+TGG | - | chr8.2:23272287-23272306 | MS.gene72927:CDS | 45.0% | |
| ATGAAACCCTGGAGATAACG+AGG | + | chr8.2:23271649-23271668 | None:intergenic | 45.0% | |
| CAGCAGCAATCCTCATTACT+TGG | - | chr8.2:23271712-23271731 | MS.gene72927:CDS | 45.0% | |
| CCTAGCAGATACTTCATGCA+CGG | - | chr8.2:23270765-23270784 | MS.gene72927:CDS | 45.0% | |
| CTACAACTTATCGCAGGACA+AGG | + | chr8.2:23271810-23271829 | None:intergenic | 45.0% | |
| CTTAAAGTCAGAGGTCCACT+CGG | + | chr8.2:23272212-23272231 | None:intergenic | 45.0% | |
| GCCTGAGCAATAAACACTGT+TGG | + | chr8.2:23271236-23271255 | None:intergenic | 45.0% | |
| GCTTCACCATGGTAAGATCT+AGG | + | chr8.2:23271550-23271569 | None:intergenic | 45.0% | |
| TTCAATTCAGCTGGTGCATG+TGG | - | chr8.2:23270933-23270952 | MS.gene72927:intron | 45.0% | |
| ! | CGTGCATGAAGTATCTGCTA+GGG | + | chr8.2:23270767-23270786 | None:intergenic | 45.0% |
| ! | GCATGTGGATTTGGTTCCTT+TGG | - | chr8.2:23270948-23270967 | MS.gene72927:intron | 45.0% |
| ! | GCCACTTCTCTATTAGCTCT+TGG | - | chr8.2:23271358-23271377 | MS.gene72927:CDS | 45.0% |
| ! | GGTGCTATAATGCTTCACCA+TGG | + | chr8.2:23271561-23271580 | None:intergenic | 45.0% |
| CGAGTGGACCTCTGACTTTA+AGG | - | chr8.2:23272210-23272229 | MS.gene72927:CDS | 50.0% | |
| TATCGAGATGGAGTTGGCTG+TGG | - | chr8.2:23271014-23271033 | MS.gene72927:intron | 50.0% | |
| TCAGCTGGTGCATGTGGATT+TGG | - | chr8.2:23270939-23270958 | MS.gene72927:intron | 50.0% | |
| TGGGTAGCTACATGAAACCC+TGG | + | chr8.2:23271660-23271679 | None:intergenic | 50.0% | |
| TTAGCCAACGAGCCTTCAGT+GGG | - | chr8.2:23271314-23271333 | MS.gene72927:CDS | 50.0% | |
| ! | CCGTGCATGAAGTATCTGCT+AGG | + | chr8.2:23270768-23270787 | None:intergenic | 50.0% |
| ! | TCTCCAGCCTTCCAGTTTTC+TGG | + | chr8.2:23272293-23272312 | None:intergenic | 50.0% |
| AAAGTCAGAGGTCCACTCGG+TGG | + | chr8.2:23272209-23272228 | None:intergenic | 55.0% | |
| ACCCTGGAGATAACGAGGAG+AGG | + | chr8.2:23271644-23271663 | None:intergenic | 55.0% | |
| ACTTCTACCTCTCCACCGAG+TGG | - | chr8.2:23272194-23272213 | MS.gene72927:intron | 55.0% | |
| CTTAGCCAACGAGCCTTCAG+TGG | - | chr8.2:23271313-23271332 | MS.gene72927:CDS | 55.0% | |
| GAGATAACGAGGAGAGGCCT+TGG | + | chr8.2:23271638-23271657 | None:intergenic | 55.0% | |
| GCCTCTCCTCGTTATCTCCA+GGG | - | chr8.2:23271640-23271659 | MS.gene72927:intron | 55.0% | |
| GCTGGAGACACGTATGACTC+AGG | - | chr8.2:23272305-23272324 | MS.gene72927:CDS | 55.0% | |
| ! | TTGCTCAGGCAACGGTGTCA+CGG | - | chr8.2:23271246-23271265 | MS.gene72927:intron | 55.0% |
| AACTGCTGTGCAGCTCTGCG+AGG | - | chr8.2:23271772-23271791 | MS.gene72927:CDS | 60.0% | |
| ATCGGGATCATGGCGCAGTC+TGG | - | chr8.2:23272171-23272190 | MS.gene72927:intron | 60.0% | |
| CAGTGGGATGGCTCAGAGCA+AGG | - | chr8.2:23271330-23271349 | MS.gene72927:CDS | 60.0% | |
| CCAACGAGCCTTCAGTGGGA+TGG | - | chr8.2:23271318-23271337 | MS.gene72927:CDS | 60.0% | |
| CCATCCCACTGAAGGCTCGT+TGG | + | chr8.2:23271321-23271340 | None:intergenic | 60.0% | |
| GGCCTCTCCTCGTTATCTCC+AGG | - | chr8.2:23271639-23271658 | MS.gene72927:intron | 60.0% | |
| ! | GCTCTGAGCCATCCCACTGA+AGG | + | chr8.2:23271329-23271348 | None:intergenic | 60.0% |
| ! | TGGCTGTGGCGCTTGTTACC+AGG | - | chr8.2:23271028-23271047 | MS.gene72927:intron | 60.0% |
| ! | CAGAGGTCCACTCGGTGGAG+AGG | + | chr8.2:23272204-23272223 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 23270709 | 23272346 | 23270709 | ID=MS.gene72927 |
| chr8.2 | mRNA | 23270709 | 23272346 | 23270709 | ID=MS.gene72927.t1;Parent=MS.gene72927 |
| chr8.2 | exon | 23272208 | 23272346 | 23272208 | ID=MS.gene72927.t1.exon1;Parent=MS.gene72927.t1 |
| chr8.2 | CDS | 23272208 | 23272346 | 23272208 | ID=cds.MS.gene72927.t1;Parent=MS.gene72927.t1 |
| chr8.2 | exon | 23272006 | 23272112 | 23272006 | ID=MS.gene72927.t1.exon2;Parent=MS.gene72927.t1 |
| chr8.2 | CDS | 23272006 | 23272112 | 23272006 | ID=cds.MS.gene72927.t1;Parent=MS.gene72927.t1 |
| chr8.2 | exon | 23271651 | 23271832 | 23271651 | ID=MS.gene72927.t1.exon3;Parent=MS.gene72927.t1 |
| chr8.2 | CDS | 23271651 | 23271832 | 23271651 | ID=cds.MS.gene72927.t1;Parent=MS.gene72927.t1 |
| chr8.2 | exon | 23271262 | 23271394 | 23271262 | ID=MS.gene72927.t1.exon4;Parent=MS.gene72927.t1 |
| chr8.2 | CDS | 23271262 | 23271394 | 23271262 | ID=cds.MS.gene72927.t1;Parent=MS.gene72927.t1 |
| chr8.2 | exon | 23270709 | 23270912 | 23270709 | ID=MS.gene72927.t1.exon5;Parent=MS.gene72927.t1 |
| chr8.2 | CDS | 23270709 | 23270912 | 23270709 | ID=cds.MS.gene72927.t1;Parent=MS.gene72927.t1 |
| Gene Sequence |
| Protein sequence |
