AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene73034

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73034.t1 MTR_3g022930 88.172 279 33 0 5 283 883 1161 9.14e-170 500
MS.gene73034.t1 MTR_0468s0010 72.143 280 66 3 5 283 849 1117 1.92e-130 397
MS.gene73034.t1 MTR_8g012080 58.394 274 88 4 5 277 875 1123 1.11e-96 307
MS.gene73034.t1 MTR_5g036240 57.143 273 89 5 5 276 730 975 3.66e-92 293
MS.gene73034.t1 MTR_8g012005 50.865 289 116 5 5 282 10 283 1.84e-88 265
MS.gene73034.t1 MTR_8g011710 55.839 274 86 4 5 277 898 1137 1.84e-87 282
MS.gene73034.t1 MTR_8g012180 53.846 273 70 4 5 277 662 878 1.09e-84 271
MS.gene73034.t1 MTR_8g012180 53.846 273 70 4 5 277 871 1087 2.11e-83 271
MS.gene73034.t1 MTR_8g073730 51.449 276 68 5 3 277 874 1084 3.20e-77 254
MS.gene73034.t1 MTR_8g011870 49.615 260 112 4 17 274 121 363 7.38e-75 233
MS.gene73034.t1 MTR_8g037235 47.751 289 127 3 5 276 791 1072 8.51e-75 247
MS.gene73034.t1 MTR_8g012200 49.817 273 74 3 5 277 882 1091 1.14e-74 247
MS.gene73034.t1 MTR_5g071610 51.103 272 89 5 5 274 870 1099 4.32e-73 243
MS.gene73034.t1 MTR_7g025250 49.451 273 68 4 5 277 891 1093 9.47e-70 233
MS.gene73034.t1 MTR_8g012190 54.018 224 72 5 3 226 864 1056 1.55e-65 221
MS.gene73034.t1 MTR_8g012190 54.018 224 72 5 3 226 870 1062 1.92e-65 221
MS.gene73034.t1 MTR_3g072140 60.556 180 70 1 8 186 701 880 2.18e-64 216
MS.gene73034.t1 MTR_8g011850 68.966 145 44 1 5 148 905 1049 6.39e-61 209
MS.gene73034.t1 MTR_2g437560 64.103 156 56 0 5 160 851 1006 7.41e-60 205
MS.gene73034.t1 MTR_2g437560 54.902 51 23 0 233 283 984 1034 1.38e-11 65.1
MS.gene73034.t1 MTR_5g047530 59.756 164 65 1 3 166 875 1037 1.91e-58 201
MS.gene73034.t1 MTR_5g029940 56.977 172 57 2 3 174 1 155 1.47e-57 182
MS.gene73034.t1 MTR_8g011950 58.824 170 69 1 3 172 852 1020 5.99e-56 194
MS.gene73034.t1 MTR_5g047480 57.317 164 53 2 3 166 875 1021 5.65e-55 191
MS.gene73034.t1 MTR_8g037220 60.645 155 61 0 5 159 805 959 1.28e-54 191
MS.gene73034.t1 MTR_8g037220 60.645 155 61 0 5 159 584 738 1.72e-54 190
MS.gene73034.t1 MTR_8g020430 66.667 126 42 0 5 130 851 976 3.87e-48 171
MS.gene73034.t1 MTR_6g015455 43.537 147 83 0 2 148 1265 1411 3.50e-33 129
MS.gene73034.t1 MTR_6g015455 41.304 138 80 1 2 139 282 418 2.46e-25 105
MS.gene73034.t1 MTR_6g015665 45.926 135 73 0 3 137 976 1110 5.74e-31 122
MS.gene73034.t1 MTR_4g020535 45.652 138 74 1 8 144 867 1004 6.24e-31 122
MS.gene73034.t1 MTR_4g014990 45.775 142 76 1 3 144 918 1058 2.28e-30 120
MS.gene73034.t1 MTR_4g014570 44.366 142 78 1 3 144 960 1100 3.63e-29 117
MS.gene73034.t1 MTR_7g091540 41.844 141 81 1 3 143 532 671 3.99e-29 116
MS.gene73034.t1 MTR_4g020590 46.457 127 67 1 8 133 1379 1505 7.87e-29 116
MS.gene73034.t1 MTR_4g020590 46.457 127 67 1 8 133 1386 1512 7.87e-29 116
MS.gene73034.t1 MTR_3g104170 41.045 134 78 1 7 140 1 133 1.10e-28 108
MS.gene73034.t1 MTR_3g104240 41.045 134 78 1 7 140 1 133 1.10e-28 108
MS.gene73034.t1 MTR_4g015030 42.254 142 78 2 3 144 939 1076 2.02e-28 115
MS.gene73034.t1 MTR_0552s0040 46.667 120 64 0 17 136 337 456 2.24e-28 114
MS.gene73034.t1 MTR_3g104130 41.045 134 78 1 7 140 1 133 2.38e-28 107
MS.gene73034.t1 MTR_3g104210 41.045 134 78 1 7 140 1 133 2.38e-28 107
MS.gene73034.t1 MTR_4g021095 46.667 120 64 0 17 136 1277 1396 3.81e-28 114
MS.gene73034.t1 MTR_6g015765 40.800 125 73 1 7 131 1 124 3.25e-27 104
MS.gene73034.t1 MTR_6g015595 42.857 133 74 2 10 141 4 135 8.09e-27 105
MS.gene73034.t1 MTR_7g055970 46.269 134 70 2 16 148 368 500 2.91e-26 108
MS.gene73034.t1 MTR_6g015430 40.411 146 86 1 3 148 936 1080 3.53e-26 108
MS.gene73034.t1 MTR_4g020850 48.031 127 65 1 8 133 1603 1729 3.99e-26 108
MS.gene73034.t1 MTR_4g015060 39.583 144 86 1 3 146 932 1074 5.97e-26 107
MS.gene73034.t1 MTR_6g015430 40.411 146 86 1 3 148 743 887 5.99e-26 107
MS.gene73034.t1 MTR_6g015505 40.690 145 84 2 3 146 699 842 9.31e-26 107
MS.gene73034.t1 MTR_6g015680 41.085 129 75 1 3 131 928 1055 1.93e-25 106
MS.gene73034.t1 MTR_4g020490 42.857 119 68 0 13 131 1530 1648 2.05e-25 106
MS.gene73034.t1 MTR_6g015435 41.304 138 80 1 2 139 900 1036 2.23e-25 105
MS.gene73034.t1 MTR_6g015510 43.411 129 72 1 3 131 915 1042 2.30e-25 105
MS.gene73034.t1 MTR_4g021170 40.580 138 81 1 8 144 1380 1517 3.82e-25 105
MS.gene73034.t1 MTR_4g023400 44.715 123 66 2 12 133 1401 1522 5.35e-25 105
MS.gene73034.t1 MTR_6g015745 42.029 138 79 1 3 140 917 1053 7.09e-25 104
MS.gene73034.t1 MTR_6g015675 40.580 138 81 1 2 139 338 474 7.16e-25 103
MS.gene73034.t1 MTR_4g021023 41.221 131 77 0 16 146 1160 1290 8.28e-25 104
MS.gene73034.t1 MTR_4g021023 30.909 220 136 5 16 233 1411 1616 1.16e-24 103
MS.gene73034.t1 MTR_7g088950 47.200 125 64 2 15 138 1409 1532 1.72e-24 103
MS.gene73034.t1 MTR_7g088950 47.200 125 64 2 15 138 1410 1533 1.84e-24 103
MS.gene73034.t1 MTR_7g088950 47.200 125 64 2 15 138 1911 2034 1.87e-24 103
MS.gene73034.t1 MTR_7g088950 47.200 125 64 2 15 138 1877 2000 1.96e-24 103
MS.gene73034.t1 MTR_7g088950 47.200 125 64 2 15 138 1375 1498 2.01e-24 103
MS.gene73034.t1 MTR_7g088950 47.200 125 64 2 15 138 1409 1532 2.02e-24 103
MS.gene73034.t1 MTR_7g088950 47.200 125 64 2 15 138 1375 1498 2.06e-24 103
MS.gene73034.t1 MTR_7g088950 47.200 125 64 2 15 138 1375 1498 2.06e-24 103
MS.gene73034.t1 MTR_4g021057 44.000 125 68 2 8 131 1419 1542 2.07e-24 103
MS.gene73034.t1 MTR_7g088950 47.200 125 64 2 15 138 1911 2034 2.37e-24 103
MS.gene73034.t1 MTR_4g020550 42.623 122 70 0 25 146 1372 1493 2.39e-24 103
MS.gene73034.t1 MTR_6g015775 44.628 121 66 1 11 131 999 1118 2.55e-24 102
MS.gene73034.t1 MTR_0294s0010 41.221 131 75 1 16 146 731 859 3.39e-24 102
MS.gene73034.t1 MTR_6g015490 42.424 132 75 1 2 133 968 1098 4.08e-24 102
MS.gene73034.t1 MTR_0286s0020 40.714 140 82 1 8 146 400 539 6.81e-24 101
MS.gene73034.t1 MTR_6g015490 42.424 132 75 1 2 133 742 872 7.85e-24 101
MS.gene73034.t1 MTR_6g015730 40.310 129 76 1 3 131 1200 1327 1.51e-23 100
MS.gene73034.t1 MTR_6g015410 35.915 142 90 1 3 144 890 1030 1.07e-22 98.2
MS.gene73034.t1 MTR_4g020700 44.094 127 70 1 8 133 1398 1524 2.21e-22 97.4
MS.gene73034.t1 MTR_4g020700 44.094 127 70 1 8 133 1398 1524 2.80e-22 97.1
MS.gene73034.t1 MTR_6g015405 42.149 121 70 0 26 146 947 1067 2.89e-22 97.1
MS.gene73034.t1 MTR_6g015695 41.353 133 77 1 1 133 925 1056 3.54e-22 96.7
MS.gene73034.t1 MTR_4g020640 38.129 139 84 1 8 146 1417 1553 5.93e-22 96.3
MS.gene73034.t1 MTR_4g020640 38.129 139 84 1 8 146 1417 1553 6.25e-22 95.9
MS.gene73034.t1 MTR_4g021030 52.941 85 40 0 47 131 6 90 8.19e-22 89.4
MS.gene73034.t1 MTR_6g016000 37.956 137 85 0 10 146 956 1092 1.17e-21 95.1
MS.gene73034.t1 MTR_6g016000 37.956 137 85 0 10 146 974 1110 1.39e-21 95.1
MS.gene73034.t1 MTR_6g015600 38.760 129 74 3 3 131 621 744 1.68e-21 94.7
MS.gene73034.t1 MTR_4g017740 51.765 85 41 0 47 131 6 90 8.08e-21 88.2
MS.gene73034.t1 MTR_6g015580 39.231 130 64 4 15 131 904 1031 4.99e-18 84.3
MS.gene73034.t1 MTR_6g015580 39.231 130 64 4 15 131 738 865 7.56e-18 84.0
MS.gene73034.t1 MTR_5g029935 60.274 73 21 1 205 277 52 116 9.68e-18 77.4
MS.gene73034.t1 MTR_4g068200 39.259 135 78 3 15 146 478 611 1.62e-17 82.8
MS.gene73034.t1 MTR_2g450830 33.588 131 79 2 3 133 743 865 5.80e-15 75.5
MS.gene73034.t1 MTR_6g465280 46.053 76 41 0 54 129 3 78 2.04e-14 68.2
MS.gene73034.t1 MTR_4g014580 38.583 127 63 5 68 183 629 751 3.23e-13 70.1
MS.gene73034.t1 MTR_4g020760 33.333 129 58 2 16 144 533 633 4.12e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 62 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGATGATGGTTGCATTTC+CGG 0.144948 3.2:+11858788 None:intergenic
CTGCCAATCTTCATCGTTAA+AGG 0.198952 3.2:+11858997 None:intergenic
TCAGGTGATGGTTGCACTTC+TGG 0.206066 3.2:+11858623 None:intergenic
CTGTGTCTCGCTTGTATATA+TGG 0.238862 3.2:+11859026 None:intergenic
TTCTAGTGATTCTTTACTTC+CGG 0.248649 3.2:-11859236 MS.gene73034:CDS
TTTAGAAGTTGGGGACAATA+TGG 0.251959 3.2:-11858960 MS.gene73034:CDS
CGGGTGACAATTATCCTTAT+TGG 0.252816 3.2:-11859216 MS.gene73034:CDS
ACCATCATCTAATGTGAAAA+TGG 0.265200 3.2:-11858777 MS.gene73034:CDS
TGCACTTCTGGTTCAGGTAA+TGG 0.304728 3.2:+11858635 None:intergenic
TCTTAGGTAATGGCTCATTC+TGG 0.305321 3.2:+11858525 None:intergenic
TCCGTTTGCACTTCACTAGA+TGG 0.337931 3.2:+11858824 None:intergenic
TGCATTTCCGGTTCAGGTAA+TGG 0.343364 3.2:+11858800 None:intergenic
GATGGTTGCATTTCCGGTTC+AGG 0.348669 3.2:+11858794 None:intergenic
TCTAGTGATTCTTTACTTCC+GGG 0.349977 3.2:-11859235 MS.gene73034:CDS
GATGGTTTCACTTCCAGTTC+AGG 0.352412 3.2:+11858701 None:intergenic
GATGGTTGCACTTCTGGTTC+AGG 0.353704 3.2:+11858629 None:intergenic
GATGGAACCATTACCTGAAC+TGG 0.360364 3.2:-11858714 MS.gene73034:CDS
GAAGTGAAACCATCGTCTAA+TGG 0.362427 3.2:-11858692 MS.gene73034:CDS
AAAGCATATGTTCATGATAC+AGG 0.367716 3.2:-11859275 None:intergenic
GTAGTATCAAATTTAGAAGT+TGG 0.378183 3.2:-11858971 MS.gene73034:CDS
TTCACTTCCAGTTCAGGTAA+TGG 0.401226 3.2:+11858707 None:intergenic
TAGTATCAAATTTAGAAGTT+GGG 0.402616 3.2:-11858970 MS.gene73034:CDS
TTAGAAGTTGGGGACAATAT+GGG 0.408529 3.2:-11858959 MS.gene73034:CDS
AACGGAGCCATTACCTGAAC+CGG 0.412400 3.2:-11858807 MS.gene73034:CDS
AAGTGAAACCATCGTCTAAT+GGG 0.433422 3.2:-11858691 MS.gene73034:CDS
CTTGTATAGGCTAACCAATA+AGG 0.433460 3.2:+11859202 None:intergenic
AACCATCGTCTAATGGGAAA+AGG 0.447392 3.2:-11858685 MS.gene73034:CDS
GAGAATGTTTATGCTTGAAT+CGG 0.450969 3.2:-11858463 MS.gene73034:CDS
AATGGCTCATTCTGGATGAT+AGG 0.452964 3.2:+11858533 None:intergenic
TGTCCTTTAACGATGAAGAT+TGG 0.458044 3.2:-11859000 MS.gene73034:CDS
GATGGCTCCCTCTTCACATC+AGG 0.460231 3.2:+11858605 None:intergenic
TGCACTTCATCTTCAAGTGA+TGG 0.479282 3.2:+11858587 None:intergenic
ACCATCTAGTGAAGTGCAAA+CGG 0.479830 3.2:-11858825 MS.gene73034:CDS
GATTGTGATGGTTGCTTGAA+GGG 0.491784 3.2:-11859145 MS.gene73034:CDS
TGAAGGTCCTTCACTTGTAT+AGG 0.496364 3.2:+11859189 None:intergenic
TTCATCCATGTCTGAAAACA+TGG 0.497227 3.2:-11859101 MS.gene73034:CDS
TCCCTCTTCACATCAGGTGA+TGG 0.501554 3.2:+11858611 None:intergenic
AATGGCTCCATCTTCACATC+AGG 0.505991 3.2:+11858653 None:intergenic
TAGAAGTTGGGGACAATATG+GGG 0.506277 3.2:-11858958 MS.gene73034:CDS
ACCATCGTCTAATGGGAAAA+GGG 0.522311 3.2:-11858684 MS.gene73034:CDS
GGCATCACCTGATGTGAAGA+TGG 0.524492 3.2:-11858660 MS.gene73034:CDS
GGATTGTGATGGTTGCTTGA+AGG 0.533310 3.2:-11859146 MS.gene73034:CDS
GGCTGCACTTCTTCTAGTGA+TGG 0.537063 3.2:+11858752 None:intergenic
TTATGCTTGAATCGGAATAG+AGG 0.545041 3.2:-11858455 MS.gene73034:CDS
GCAATCACTTGATGTGAAGA+TGG 0.552993 3.2:-11858564 MS.gene73034:CDS
TGGTTAGCCTATACAAGTGA+AGG 0.558071 3.2:-11859196 MS.gene73034:CDS
AGTATCAAATTTAGAAGTTG+GGG 0.561200 3.2:-11858969 MS.gene73034:CDS
GGCACTTCAAATCGTACTGA+AGG 0.580404 3.2:+11859172 None:intergenic
AATTGAGCAATCAAATACTT+CGG 0.581649 3.2:-11858855 MS.gene73034:CDS
AAGCAACCATCACAATCCTC+AGG 0.585035 3.2:+11859151 None:intergenic
ACCATCACCTGATGTGAAGA+GGG 0.587941 3.2:-11858612 MS.gene73034:CDS
CAATAAGGATAATTGTCACC+CGG 0.589127 3.2:+11859217 None:intergenic
GCCATCGGCTGATATGAAGA+TGG 0.596447 3.2:-11858732 MS.gene73034:CDS
TCCATCTTCATATCAGCCGA+TGG 0.596565 3.2:+11858731 None:intergenic
AACCATCACCTGATGTGAAG+AGG 0.597096 3.2:-11858613 MS.gene73034:CDS
TCATTCTGGATGATAGGTGA+TGG 0.601496 3.2:+11858539 None:intergenic
AGTACGATTTGAAGTGCCTG+AGG 0.620851 3.2:-11859167 MS.gene73034:CDS
TGAGCAATCAAATACTTCGG+AGG 0.627166 3.2:-11858852 MS.gene73034:CDS
AAGCATATGTTCATGATACA+GGG 0.633344 3.2:-11859274 None:intergenic
ACTAGAAGAAGTGCAGCCAT+CGG 0.635278 3.2:-11858747 MS.gene73034:CDS
GAAGTGCCTGAGGATTGTGA+TGG 0.661205 3.2:-11859157 MS.gene73034:CDS
ATCGTCTAATGGGAAAAGGG+AGG 0.683876 3.2:-11858681 MS.gene73034:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTTTTATTTCTCTT+AGG + chr3.2:11859201-11859220 None:intergenic 10.0%
!! TAGTATCAAATTTAGAAGTT+GGG - chr3.2:11858737-11858756 MS.gene73034:CDS 20.0%
!!! TTTTTATTTCTCTTAGGTAA+TGG + chr3.2:11859195-11859214 None:intergenic 20.0%
! AATTGAGCAATCAAATACTT+CGG - chr3.2:11858852-11858871 MS.gene73034:CDS 25.0%
! AGTATCAAATTTAGAAGTTG+GGG - chr3.2:11858738-11858757 MS.gene73034:CDS 25.0%
! GTAGTATCAAATTTAGAAGT+TGG - chr3.2:11858736-11858755 MS.gene73034:CDS 25.0%
!! GTAAGATTTTCAAAGAGATT+GGG - chr3.2:11859222-11859241 MS.gene73034:CDS 25.0%
!! TGTAAGATTTTCAAAGAGAT+TGG - chr3.2:11859221-11859240 MS.gene73034:CDS 25.0%
ACCATCATCTAATGTGAAAA+TGG - chr3.2:11858930-11858949 MS.gene73034:CDS 30.0%
GAGAATGTTTATGCTTGAAT+CGG - chr3.2:11859244-11859263 MS.gene73034:CDS 30.0%
TTCTAGTGATTCTTTACTTC+CGG - chr3.2:11858471-11858490 MS.gene73034:CDS 30.0%
! AATTTTCATAGCACTTGACT+CGG + chr3.2:11858836-11858855 None:intergenic 30.0%
! TCCATTTTCACATTAGATGA+TGG + chr3.2:11858934-11858953 None:intergenic 30.0%
AAGTGAAACCATCGTCTAAT+GGG - chr3.2:11859016-11859035 MS.gene73034:CDS 35.0%
CAATAAGGATAATTGTCACC+CGG + chr3.2:11858493-11858512 None:intergenic 35.0%
CTTGTATAGGCTAACCAATA+AGG + chr3.2:11858508-11858527 None:intergenic 35.0%
TCTAGTGATTCTTTACTTCC+GGG - chr3.2:11858472-11858491 MS.gene73034:CDS 35.0%
TGTCCTTTAACGATGAAGAT+TGG - chr3.2:11858707-11858726 MS.gene73034:CDS 35.0%
TTAGAAGTTGGGGACAATAT+GGG - chr3.2:11858748-11858767 MS.gene73034:CDS 35.0%
TTATGCTTGAATCGGAATAG+AGG - chr3.2:11859252-11859271 MS.gene73034:CDS 35.0%
TTCATCCATGTCTGAAAACA+TGG - chr3.2:11858606-11858625 MS.gene73034:CDS 35.0%
TTTAGAAGTTGGGGACAATA+TGG - chr3.2:11858747-11858766 MS.gene73034:CDS 35.0%
! AGTTTCCATGTTTTCAGACA+TGG + chr3.2:11858614-11858633 None:intergenic 35.0%
! ATGGGGATTTTTGTAGCTTT+TGG - chr3.2:11858766-11858785 MS.gene73034:CDS 35.0%
! ATTTTTGTAGCTTTTGGGCA+TGG - chr3.2:11858772-11858791 MS.gene73034:CDS 35.0%
! TGGGGATTTTTGTAGCTTTT+GGG - chr3.2:11858767-11858786 MS.gene73034:CDS 35.0%
! TTAGATGATGGTTGCATTTC+CGG + chr3.2:11858922-11858941 None:intergenic 35.0%
AACCATCGTCTAATGGGAAA+AGG - chr3.2:11859022-11859041 MS.gene73034:CDS 40.0%
AATGGCTCATTCTGGATGAT+AGG + chr3.2:11859177-11859196 None:intergenic 40.0%
ACCATCGTCTAATGGGAAAA+GGG - chr3.2:11859023-11859042 MS.gene73034:CDS 40.0%
ACCATCTAGTGAAGTGCAAA+CGG - chr3.2:11858882-11858901 MS.gene73034:CDS 40.0%
CGGGTGACAATTATCCTTAT+TGG - chr3.2:11858491-11858510 MS.gene73034:CDS 40.0%
CTGCCAATCTTCATCGTTAA+AGG + chr3.2:11858713-11858732 None:intergenic 40.0%
CTGTGTCTCGCTTGTATATA+TGG + chr3.2:11858684-11858703 None:intergenic 40.0%
GAAGTGAAACCATCGTCTAA+TGG - chr3.2:11859015-11859034 MS.gene73034:CDS 40.0%
GATTGTGATGGTTGCTTGAA+GGG - chr3.2:11858562-11858581 MS.gene73034:CDS 40.0%
GCAATCACTTGATGTGAAGA+TGG - chr3.2:11859143-11859162 MS.gene73034:CDS 40.0%
TAGAAGTTGGGGACAATATG+GGG - chr3.2:11858749-11858768 MS.gene73034:CDS 40.0%
TCATTCTGGATGATAGGTGA+TGG + chr3.2:11859171-11859190 None:intergenic 40.0%
TGAAGGTCCTTCACTTGTAT+AGG + chr3.2:11858521-11858540 None:intergenic 40.0%
TGAGCAATCAAATACTTCGG+AGG - chr3.2:11858855-11858874 MS.gene73034:CDS 40.0%
TGCACTTCATCTTCAAGTGA+TGG + chr3.2:11859123-11859142 None:intergenic 40.0%
TTCACTTCCAGTTCAGGTAA+TGG + chr3.2:11859003-11859022 None:intergenic 40.0%
! TCTTAGGTAATGGCTCATTC+TGG + chr3.2:11859185-11859204 None:intergenic 40.0%
!! TGGTTAGCCTATACAAGTGA+AGG - chr3.2:11858511-11858530 MS.gene73034:CDS 40.0%
AACCATCACCTGATGTGAAG+AGG - chr3.2:11859094-11859113 MS.gene73034:CDS 45.0%
AAGCAACCATCACAATCCTC+AGG + chr3.2:11858559-11858578 None:intergenic 45.0%
AATGGCTCCATCTTCACATC+AGG + chr3.2:11859057-11859076 None:intergenic 45.0%
ACCATCACCTGATGTGAAGA+GGG - chr3.2:11859095-11859114 MS.gene73034:CDS 45.0%
ATCGTCTAATGGGAAAAGGG+AGG - chr3.2:11859026-11859045 MS.gene73034:CDS 45.0%
GATGGAACCATTACCTGAAC+TGG - chr3.2:11858993-11859012 MS.gene73034:CDS 45.0%
GATGGTTTCACTTCCAGTTC+AGG + chr3.2:11859009-11859028 None:intergenic 45.0%
GGATTGTGATGGTTGCTTGA+AGG - chr3.2:11858561-11858580 MS.gene73034:CDS 45.0%
GGCACTTCAAATCGTACTGA+AGG + chr3.2:11858538-11858557 None:intergenic 45.0%
TCCATCTTCATATCAGCCGA+TGG + chr3.2:11858979-11858998 None:intergenic 45.0%
TCCGTTTGCACTTCACTAGA+TGG + chr3.2:11858886-11858905 None:intergenic 45.0%
TGCATTTCCGGTTCAGGTAA+TGG + chr3.2:11858910-11858929 None:intergenic 45.0%
! ACTAGAAGAAGTGCAGCCAT+CGG - chr3.2:11858960-11858979 MS.gene73034:CDS 45.0%
! AGTACGATTTGAAGTGCCTG+AGG - chr3.2:11858540-11858559 MS.gene73034:CDS 45.0%
! TCCCTTTTCCCATTAGACGA+TGG + chr3.2:11859027-11859046 None:intergenic 45.0%
!! TGCACTTCTGGTTCAGGTAA+TGG + chr3.2:11859075-11859094 None:intergenic 45.0%
AACGGAGCCATTACCTGAAC+CGG - chr3.2:11858900-11858919 MS.gene73034:CDS 50.0%
GATGGTTGCATTTCCGGTTC+AGG + chr3.2:11858916-11858935 None:intergenic 50.0%
GGCATCACCTGATGTGAAGA+TGG - chr3.2:11859047-11859066 MS.gene73034:CDS 50.0%
GGCTGCACTTCTTCTAGTGA+TGG + chr3.2:11858958-11858977 None:intergenic 50.0%
TCCCTCTTCACATCAGGTGA+TGG + chr3.2:11859099-11859118 None:intergenic 50.0%
! GAAGTGCCTGAGGATTGTGA+TGG - chr3.2:11858550-11858569 MS.gene73034:CDS 50.0%
! GCCATCGGCTGATATGAAGA+TGG - chr3.2:11858975-11858994 MS.gene73034:CDS 50.0%
! TCAGGTGATGGTTGCACTTC+TGG + chr3.2:11859087-11859106 None:intergenic 50.0%
!! GATGGTTGCACTTCTGGTTC+AGG + chr3.2:11859081-11859100 None:intergenic 50.0%
GATGGCTCCCTCTTCACATC+AGG + chr3.2:11859105-11859124 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 11858439 11859290 11858439 ID=MS.gene73034
chr3.2 mRNA 11858439 11859290 11858439 ID=MS.gene73034.t1;Parent=MS.gene73034
chr3.2 exon 11858439 11859290 11858439 ID=MS.gene73034.t1.exon1;Parent=MS.gene73034.t1
chr3.2 CDS 11858439 11859290 11858439 ID=cds.MS.gene73034.t1;Parent=MS.gene73034.t1
Gene Sequence

>MS.gene73034

ATGTTCATGATACAGGGATTGACAATCAATGATTCTAGTGATTCTTTACTTCCGGGTGACAATTATCCTTATTGGTTAGCCTATACAAGTGAAGGACCTTCAGTACGATTTGAAGTGCCTGAGGATTGTGATGGTTGCTTGAAGGGAATAACTTTATATGTTGTTTATTCATCCATGTCTGAAAACATGGAAACTGAATGTCTGATTAGTGTTTTGATCATTAATTACACAAAATTCACGCTCCATATATACAAGCGAGACACAGTAATGTCCTTTAACGATGAAGATTGGCAGAGTGTAGTATCAAATTTAGAAGTTGGGGACAATATGGGGATTTTTGTAGCTTTTGGGCATGGATTGACTGTTAAGAAGACAGTTGTCTATCTAACATATGCCGAGTCAAGTGCTATGAAAATTGAGCAATCAAATACTTCGGAGGTTAAACCATCTAGTGAAGTGCAAACGGAGCCATTACCTGAACCGGAAATGCAACCATCATCTAATGTGAAAATGGAGCCATCACTAGAAGAAGTGCAGCCATCGGCTGATATGAAGATGGAACCATTACCTGAACTGGAAGTGAAACCATCGTCTAATGGGAAAAGGGAGGCATCACCTGATGTGAAGATGGAGCCATTACCTGAACCAGAAGTGCAACCATCACCTGATGTGAAGAGGGAGCCATCACTTGAAGATGAAGTGCAGCAATCACTTGATGTGAAGATGGAGCCATCACCTATCATCCAGAATGAGCCATTACCTAAGAGAAATAAAAAAATATTTGTAAGATTTTCAAAGAGATTGGGAGAATGTTTATGCTTGAATCGGAATAGAGGTCTCAAGAATTTTTAA
Protein sequence

>MS.gene73034.t1

MFMIQGLTINDSSDSLLPGDNYPYWLAYTSEGPSVRFEVPEDCDGCLKGITLYVVYSSMSENMETECLISVLIINYTKFTLHIYKRDTVMSFNDEDWQSVVSNLEVGDNMGIFVAFGHGLTVKKTVVYLTYAESSAMKIEQSNTSEVKPSSEVQTEPLPEPEMQPSSNVKMEPSLEEVQPSADMKMEPLPELEVKPSSNGKREASPDVKMEPLPEPEVQPSPDVKREPSLEDEVQQSLDVKMEPSPIIQNEPLPKRNKKIFVRFSKRLGECLCLNRNRGLKNF