AlfalfaGEDB | MS.gene057360

M. sativa cultivar XinJiangDaYe / MS.gene057360

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057360.t1	XP_003600822.1	96.8	373	12	0	1	373	1	373	6.00E-204	719.9

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057360.t1	G7JAK9	96.8	373	12	0	1	373	1	373	4.3e-204	719.9

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene057360	0.837098	6.35E-57	-1.69E-46
MS.gene049178	MS.gene057360	0.814	1.92E-51	-1.69E-46
MS.gene049208	MS.gene057360	0.830112	3.53E-55	-1.69E-46
MS.gene049585	MS.gene057360	0.806867	6.68E-50	-1.69E-46
MS.gene049647	MS.gene057360	0.814378	1.59E-51	-1.69E-46
MS.gene049756	MS.gene057360	0.803175	3.95E-49	-1.69E-46
MS.gene050114	MS.gene057360	0.830519	2.81E-55	-1.69E-46
MS.gene050439	MS.gene057360	0.847744	9.53E-60	-1.69E-46
MS.gene050442	MS.gene057360	0.803775	2.97E-49	-1.69E-46
MS.gene050780	MS.gene057360	0.802978	4.34E-49	-1.69E-46

Showing 1 to 10 of 355 entries

Previous1 2 3 4 5…36Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057360.t1	MTR_3g069790	96.543	376	12	1	1	376	1	375	0.0	747

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057360.t1	AT4G15640	61.682	321	123	0	54	374	7	327	5.19e-153	434
MS.gene057360.t1	AT4G15640	61.682	321	123	0	54	374	68	388	1.01e-152	436
MS.gene057360.t1	AT3G21465	54.756	389	158	5	1	374	1	386	3.48e-150	429
MS.gene057360.t1	AT3G21465	54.061	394	158	6	1	374	1	391	9.20e-148	424

Showing 1 to 4 of 4 entries

Previous1Next

Find 68 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTATATCTGCCGTGCC+TGG	0.513854	3.1:+57163712	None:intergenic
AAATGTGTGAGCAGGAAAGA+AGG	0.546383	3.1:-57163961	MS.gene057360:intron
AAGGTTCAGATTTCACTTGC+CGG	0.400102	3.1:+57164606	None:intergenic
AATAAAGCATACCAAAATCA+AGG	0.473268	3.1:+57164070	None:intergenic
AATGATTTACCATTGCAACC+AGG	0.653462	3.1:-57163730	MS.gene057360:CDS
AATGTTGAAGGGACTCCAAC+AGG	0.448749	3.1:-57164539	MS.gene057360:intron
ACAGAAGACTAATATCGTGA+TGG	0.637044	3.1:+57164323	None:intergenic
ACTAAGGCATGTGTTCATGC+GGG	0.600193	3.1:-57164096	MS.gene057360:CDS
ACTGAAGAACCGATTCTCTC+GGG	0.459527	3.1:-57164647	MS.gene057360:CDS
ACTTGAGGCAAATATAAGTT+TGG	0.371392	3.1:-57160119	MS.gene057360:CDS

Showing 1 to 10 of 68 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATTAGTTCCACAACATGA+TGG	-	chr3.1:57164242-57164261	MS.gene057360:intron	30.0%
AAGATGCAAGTTAGTACATA+AGG	+	chr3.1:57161949-57161968	None:intergenic	30.0%
AAGGAAAAAAAAAAGGTGAG+AGG	+	chr3.1:57160561-57160580	None:intergenic	30.0%
AATAAGCTGTTTATCCAAAC+AGG	+	chr3.1:57162622-57162641	None:intergenic	30.0%
ACAAAGACACAAAACTCATA+AGG	+	chr3.1:57163036-57163055	None:intergenic	30.0%
ACTTGAGGCAAATATAAGTT+TGG	-	chr3.1:57164690-57164709	MS.gene057360:CDS	30.0%
AGGAAAAAAAAAAGGTGAGA+GGG	+	chr3.1:57160560-57160579	None:intergenic	30.0%
AGTTGCCTTCATAAAACAAA+AGG	+	chr3.1:57161310-57161329	None:intergenic	30.0%
ATAAGAACAGTTGTGAAGAT+AGG	-	chr3.1:57164180-57164199	MS.gene057360:intron	30.0%
ATGTGATGCAACTTAATACA+GGG	+	chr3.1:57163837-57163856	None:intergenic	30.0%

Showing 1 to 10 of 232 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	57160084	57164747	57160084	ID=MS.gene057360
chr3.1	mRNA	57160084	57164747	57160084	ID=MS.gene057360.t1;Parent=MS.gene057360
chr3.1	exon	57164540	57164747	57164540	ID=MS.gene057360.t1.exon1;Parent=MS.gene057360.t1
chr3.1	CDS	57164540	57164747	57164540	ID=cds.MS.gene057360.t1;Parent=MS.gene057360.t1
chr3.1	exon	57164294	57164448	57164294	ID=MS.gene057360.t1.exon2;Parent=MS.gene057360.t1
chr3.1	CDS	57164294	57164448	57164294	ID=cds.MS.gene057360.t1;Parent=MS.gene057360.t1
chr3.1	exon	57164082	57164175	57164082	ID=MS.gene057360.t1.exon3;Parent=MS.gene057360.t1
chr3.1	CDS	57164082	57164175	57164082	ID=cds.MS.gene057360.t1;Parent=MS.gene057360.t1
chr3.1	exon	57163899	57163969	57163899	ID=MS.gene057360.t1.exon4;Parent=MS.gene057360.t1
chr3.1	CDS	57163899	57163969	57163899	ID=cds.MS.gene057360.t1;Parent=MS.gene057360.t1
chr3.1	exon	57163709	57163815	57163709	ID=MS.gene057360.t1.exon5;Parent=MS.gene057360.t1
chr3.1	CDS	57163709	57163815	57163709	ID=cds.MS.gene057360.t1;Parent=MS.gene057360.t1
chr3.1	exon	57163062	57163183	57163062	ID=MS.gene057360.t1.exon6;Parent=MS.gene057360.t1
chr3.1	CDS	57163062	57163183	57163062	ID=cds.MS.gene057360.t1;Parent=MS.gene057360.t1
chr3.1	exon	57161270	57161358	57161270	ID=MS.gene057360.t1.exon7;Parent=MS.gene057360.t1
chr3.1	CDS	57161270	57161358	57161270	ID=cds.MS.gene057360.t1;Parent=MS.gene057360.t1
chr3.1	exon	57160812	57160871	57160812	ID=MS.gene057360.t1.exon8;Parent=MS.gene057360.t1
chr3.1	CDS	57160812	57160871	57160812	ID=cds.MS.gene057360.t1;Parent=MS.gene057360.t1
chr3.1	exon	57160299	57160403	57160299	ID=MS.gene057360.t1.exon9;Parent=MS.gene057360.t1
chr3.1	CDS	57160299	57160403	57160299	ID=cds.MS.gene057360.t1;Parent=MS.gene057360.t1
chr3.1	exon	57160084	57160203	57160084	ID=MS.gene057360.t1.exon10;Parent=MS.gene057360.t1
chr3.1	CDS	57160084	57160203	57160084	ID=cds.MS.gene057360.t1;Parent=MS.gene057360.t1

Gene Sequence

>MS.gene057360

ATGCAAGTGGTGTCAAATGCTCACCGAGTCTCTCGGCTCTTGCAATCTCCGACTTTCCTTTCATCTCATCTTCGAAGCACTGAAGAACCGATTCTCTCGGGGCTCGCACAACATTATTACCGGCAAGTGAAATCTGAACCTTCAATTTTCTTCGCGTCGAAGGCTTTTTACAGTTCTGGAGTTGATAATGTTGAAGGGACTCCAACAGGTTCTTCATTCAATTGTGAACTGCAAATTCCCTTTTCGAATTTCATTTTTGTCTTGATTTATTGATTTGTATTGTTGAATTTTGAATGTAGATGCTGTGAAGAATCTTTATGATAAGATGCTTGAGTCTGTAAATGTTAAACGATCCATGCCTCCAAATGCTTGGTTGTGGTCAATGATCGCTAATTGTAAACACCATCACGATATTAGTCTTCTGTTTGACATTTTGCGAAACCTTCGCAGATTTGTTAGTTTCTATTCTCTTCCCCTCTCACCTTTTTTTTTTCCTTCCAGTTATCATTATTTTTTTTATATTGATTCACTCTCTTTGCTATGATGTTGAATTTAATCTATTTGATGAGCAGAGGTTGTCAAATCTTCGCATACATGACAATTTTAACTGCCACCTCTGTCGTGAAGTTACTAAGGCATGTGTTCATGCGGGAGCCCTTGATTTTGGTATGCTTTATTTGCGTGTCCGTTTTGTCTTTTATAAAGCTGTGCTGTTTCATTTTTGAAATTTGAAGATATGAAATGAAATTGAGGTTTTTTGGCTTAAATGTGTGAGCAGGAAAGAAGGCTTTGTGGAAGCATAATGTCTATGGATTGGCACCCAGTGTTGCATCTGCACACCATTTACTGGTATTGTTAGACATACTAATGTCCTAATTTCTTTGATTCTGTCTCCTGTTTGCATTTGGTAAGCTATTGTCAATTTATTGCAGCTTTTTGCTAAGAACAACAATGATACTAAACTATTGGTGGAGGTAATGAAACTTTTGAAGAAGAATGATTTACCATTGCAACCAGGCACGGCAGATATAGTTTTCAGGTATGTTATTATTTTAGCATTTTCAATATTTTTGTTTCGCAATACTAAGAGTCTTTTTGAAAAAGTACTTTTCAACCTCTTAAAGCAATTGCTCAACATTGAATTAATATAATTGATGTTCCCTTTGTTGCTGACTTCCATGCACTCATTTCAAATCCTGCTTTGTGTTTAGTCCCCTGAAACTCCTTTTGTTTTATGAAGGCAACTTGGTGCCTGTGTGTGTATGGTTACAAGTCTACAATACAGTTAGTTTGCATGATTTTTTGAGCTTGCAAAATGCTGAGATGCATTGTAATATAACATGTATTTAGTACCAAAAGAACCACTTTTCGAAGCTAAAAGTGATGCAAATCAAGAGAAAAAAATGAAGAATCTACCCTTTTTTATTCATCTAAAGGGTTATTTTGGTATTGTCTAACAGACTAACACTGAACATAAATTATGATCCTCACTTTTTCTTTTTATGTTGCTTTCATTCTCTTCTTTATATGCTTCTGACCTGTTACCTGGGTCAATCATTTGCAGCATTTGTTACAATACAGATGAATGGGAGTTGATTAATAAGTATGCAATAAGGTTTGTCAAGGCTGGTGTAAAACTACGTGAAACCTCATTTGACACATGGATGAAATTTGCTGCTAAAAGAGGTGCACATAGTTTGAGTTTTCTTTTTGACTTGATGTCTTTTGTCTGCCTAATTTCATGAGCTTCTGTTGAATTTTAACAGTTGTTTGTCTAAGTGGATTCCTATATTGAACATAAGCTATACATAAAATTATTGAGATAATAAATTGCTTACTTTTTGCTGGCTTTTTGATTTTTTCCTTATGTACTAACTTGCATCTTTCCTGATGTTGGCATCCTGTTTTTTCTCAGTTTTTAGGAAATTGTAAGAAACCTAAAATTGAAATGAAAACCACATGGGCAAGGTTTAAAAATATAATTTCATAAATAGCAATAAAGTTGGAATCCTGAATTTGGTTCTATTATCGATCTGGAATATATCTTATATTTAGACAAATCATATGCACTTCTGCGTTTTTGATTGAGGAATCATGCTAGAGAAACATTTTTGCCTGACTAATGTGTCTTGACTTGCTCTATCCTTATCTTTTTTTTAAATGAATTAGTTCAACTATATTAATAACTTCAAGAATTTGATGGCCATGAATACATGTAGTACTATCATATGATTTCAAGATCATGCTATAAATCATGGTTGTCAGACCGGGATATGTATCGTGTATCGTTTGACCACTTTTTTGAATCATGTATCTTATTGTATCATGTATCGTAAGCTACATTAACAAAAAAATTATGACTTCAAATATCATATATAAACTCTAAAATACTTCAAATATCAATATATAAACTTCAAGATACTTCAAAACTCAAGTCATAAACAAAAATGAATAACATAAAGCATCCTTAATTCAATCAAAACTGTACATAACTCCATGATAACTAGGAGGTTTTAGACCCTGACCTGTTTAGGACCTGTTTGGATAAACAGCTTATTTAAGCGCTTTTTGCATAAAACTAAAATAACTATACAGTTTCTGACCATCAATTTGAAAGACCAGAAGCAAGAAAATGCTTGCATTTGGGAATGAATTTTTTATCATTGGAATATGATGATTATACCATGTTATTTATAATGTTACAACAATAAATATTTACTTGCAAAAACATGTTATAAAGAAATAGATCGAGGGCAGCAGGTGAATTTTTGCATATCAGATGTTCTAGAGTAATCATAGACAATAAAAACGGCATGATGAGATTCAAAACATGTGCAGACCTACTTTTCAGTCAAACATTAAAATTTTGGTATAATGGATGGAGTGCAATAGTTGGTGTTGAGCATAAGCTTAGCAAGTTTCAATAAAATATTAAATGTTGGTAATCATCCTTATGAGTTTTGTGTCTTTGTGGTTAACTAAAGTTACATCACTAGTTGATGCTTTGTATAAGTATATAGCTGCTCTCTAGATTTTCATTTTTTTTTTTTTTTTTTTGTAATAGCGTCTCTCTAGTTTTAACCTACACTGCACTGATAATAAGTTACGTAAGTATCACCAACAGGGTGTTTTGGGATACAGGAGTAAGATACGTAACAGTGAAGGGTGTTTTCGTACCGTATCGCGATTTGTATCGTATGTATTATAGGATACAAGGTGTTCTGGGATATAGAGTAAGATACACATCAGTGTAGGGTGTTTTCATACTGTATCGCGATGCGTATCGTAGGATACTTACTACCCTGCTATAAATGATTTTTTGGGCTTTCTAAAATCGTTTCTAGTTATGATGAACTAATCATTTATGCCTTCGTGTTTTTTATTTGTAGGAGACACCGAGTCATTATGGAAAATAGAAAAGTTGCGATCTGATTCAATGAAAAAGCACACGCTGGCAACTGGATTTTCTTGTGCCAAGGTAGAAAATCCATCCACACCATTGTTTGGTTTGACAATTAATTTTGATTTTAATGCAGTTACCAAGCTTATGTGCTTTGTGTGTAGCTTATTGTGCCATATGTCAGTTTTTCTTATTAGAGAACATACTCTCTGGAACAAATACTGCACTTCATAATTTTCTATTTTGACATGTTTGTATTCATTTATTCGTTTTTTAAACAATCAAGGTTTTCTTTTTAAAGAAAAATAAAATAAAAGCTTCAGAATTTTCCCAATTTTTTAGAAACCTTACCCTGTATTAAGTTGCATCACATAAGTTCCCAATTCTGATGTGTTTCGACTTTCCAGTTGCTGAATTCTGTTGTAGCAGAGTTTCACTTTTATAAGAAGTCTAAGCCTGTTTTTATGATTTTGTAGGGTCTTCTGTTGGAAGGTAAGCCTAGTGACGCTGTTGCCATCATTCAAGATCTAAATCAGGTATGGAGTGTATGTTCTTAACATTTTTTTTTCTTTATTATCAATTTCTTCACCGATGATTGAAACAAAGAAGTACTTCTCAAATAGAAATAAAACAGCGTTAGTTGAAGTCATGAGGTTATCATCCTGTAAAGATTGGTTAAAGTACAAATCAGATTGTATAAGAACAGTTGTGAAGATAGGGGGAAAAATTATAGCTTTTTGTATAGAAACTTCAGAGTCAAATTAGTTCCACAACATGATGGTCAAGAAATTACAATTATATAATTAATTATATTTTCTGGATCTTTCTTTTTTTCTTTATTTGTTATGATGAGTGACTGTTAGCAAACTGAGTTGAACATCATATTTATCTTCGATAGTTTTTTTTTTATTAACTCTTTGTTTTATTGATTTCATTGTTGCTAGACTTTGTCTGATACCAAAAAATCTGGCATGAAAGATGAACTTCAGAAACTTGTATCAGAGTGGCCTGTTGAAGTTCTTAAGCACAAAAATGAAGAGGAAAGAAAGGTATACTATCTCATTGCAAATAAATTTTAGTTATCATTCTACTTCAGTTTCTCCTCTATAAGACAGTAACGTGTTTTTTTCTGCTTTACTGACAGGCATTAGCAGTCTCTTTGAAATCTGATATTCTTGCAATGGTTAATGATTTACTGGACATGGGACTTGAGGCAAATATAAGTTTGGAAGACCTAAACAGAAGAGAAGTTGTTCCACAATAG

Protein sequence

>MS.gene057360.t1

MQVVSNAHRVSRLLQSPTFLSSHLRSTEEPILSGLAQHYYRQVKSEPSIFFASKAFYSSGVDNVEGTPTDAVKNLYDKMLESVNVKRSMPPNAWLWSMIANCKHHHDISLLFDILRNLRRFRLSNLRIHDNFNCHLCREVTKACVHAGALDFGKKALWKHNVYGLAPSVASAHHLLLFAKNNNDTKLLVEVMKLLKKNDLPLQPGTADIVFSICYNTDEWELINKYAIRFVKAGVKLRETSFDTWMKFAAKRGDTESLWKIEKLRSDSMKKHTLATGFSCAKGLLLEGKPSDAVAIIQDLNQTLSDTKKSGMKDELQKLVSEWPVEVLKHKNEEERKALAVSLKSDILAMVNDLLDMGLEANISLEDLNRREVVPQ