Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73152.t1 | XP_003600186.1 | 95.9 | 508 | 21 | 0 | 1 | 508 | 1 | 508 | 9.30E-274 | 953 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73152.t1 | Q42545 | 85.6 | 333 | 46 | 1 | 496 | 826 | 101 | 433 | 4.5e-152 | 540.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73152.t1 | G7J040 | 95.9 | 508 | 21 | 0 | 1 | 508 | 1 | 508 | 6.7e-274 | 953.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052176 | MS.gene73152 | 0.812564 | 3.98E-51 | -1.69E-46 |
| MS.gene054942 | MS.gene73152 | 0.813749 | 2.19E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73152.t1 | MTR_3g055240 | 95.866 | 508 | 21 | 0 | 1 | 508 | 1 | 508 | 0.0 | 961 |
| MS.gene73152.t1 | MTR_3g055590 | 97.015 | 335 | 10 | 0 | 492 | 826 | 79 | 413 | 0.0 | 649 |
| MS.gene73152.t1 | MTR_7g024860 | 56.884 | 552 | 186 | 6 | 1 | 500 | 1 | 552 | 0.0 | 590 |
| MS.gene73152.t1 | MTR_7g024867 | 56.884 | 552 | 186 | 6 | 1 | 500 | 1 | 552 | 0.0 | 590 |
| MS.gene73152.t1 | MTR_5g094120 | 89.286 | 336 | 35 | 1 | 492 | 826 | 83 | 418 | 0.0 | 563 |
| MS.gene73152.t1 | MTR_7g104500 | 60.071 | 283 | 111 | 1 | 494 | 774 | 161 | 443 | 9.01e-101 | 320 |
| MS.gene73152.t1 | MTR_1g060010 | 58.947 | 285 | 115 | 1 | 492 | 774 | 146 | 430 | 2.27e-100 | 320 |
| MS.gene73152.t1 | MTR_7g104500 | 60.071 | 283 | 111 | 1 | 494 | 774 | 161 | 443 | 2.58e-100 | 320 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73152.t1 | AT1G04950 | 54.833 | 538 | 196 | 6 | 1 | 495 | 1 | 534 | 0.0 | 561 |
| MS.gene73152.t1 | AT1G04950 | 54.833 | 538 | 196 | 6 | 1 | 495 | 1 | 534 | 0.0 | 561 |
| MS.gene73152.t1 | AT1G04950 | 54.833 | 538 | 196 | 6 | 1 | 495 | 1 | 534 | 0.0 | 561 |
| MS.gene73152.t1 | AT5G55280 | 85.586 | 333 | 46 | 1 | 496 | 826 | 101 | 433 | 0.0 | 541 |
| MS.gene73152.t1 | AT1G54360 | 46.731 | 520 | 243 | 5 | 3 | 496 | 15 | 526 | 1.74e-146 | 442 |
| MS.gene73152.t1 | AT1G54360 | 46.731 | 520 | 243 | 5 | 3 | 496 | 1 | 512 | 2.29e-146 | 441 |
| MS.gene73152.t1 | AT3G52750 | 60.839 | 286 | 110 | 1 | 491 | 774 | 137 | 422 | 6.10e-104 | 329 |
| MS.gene73152.t1 | AT3G52750 | 60.839 | 286 | 110 | 1 | 491 | 774 | 137 | 422 | 6.10e-104 | 329 |
| MS.gene73152.t1 | AT3G52750 | 60.839 | 286 | 110 | 1 | 491 | 774 | 137 | 422 | 6.10e-104 | 329 |
| MS.gene73152.t1 | AT2G36250 | 60.140 | 286 | 112 | 1 | 491 | 774 | 60 | 345 | 1.32e-101 | 320 |
| MS.gene73152.t1 | AT2G36250 | 60.140 | 286 | 112 | 1 | 491 | 774 | 141 | 426 | 3.25e-101 | 322 |
| MS.gene73152.t1 | AT2G36250 | 60.140 | 286 | 112 | 1 | 491 | 774 | 141 | 426 | 3.25e-101 | 322 |
| MS.gene73152.t1 | AT2G36250 | 60.140 | 286 | 112 | 1 | 491 | 774 | 141 | 426 | 3.25e-101 | 322 |
| MS.gene73152.t1 | AT3G52750 | 61.951 | 205 | 76 | 1 | 491 | 693 | 137 | 341 | 3.14e-71 | 238 |
Find 172 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCGGCAAATATTATATT+TGG | 0.074758 | 3.4:+51255009 | MS.gene73152:CDS |
| CCTCCAGTGTTTGAATTATT+TGG | 0.110735 | 3.4:+51249460 | MS.gene73152:CDS |
| TTGATGTTTGTTTGCTTTCT+TGG | 0.113755 | 3.4:-51255164 | None:intergenic |
| GCTACTTTGGCACCTTTAAT+TGG | 0.202470 | 3.4:+51254489 | MS.gene73152:CDS |
| GACATTTCTTCATACTTTCT+TGG | 0.212884 | 3.4:+51247930 | MS.gene73152:CDS |
| TACTGGTGGTAATCCACTTT+TGG | 0.220317 | 3.4:+51253258 | MS.gene73152:CDS |
| TGAATAGATGATCCAATTAA+AGG | 0.277831 | 3.4:-51254501 | None:intergenic |
| TTTATGTATCAGCCGATATA+TGG | 0.283600 | 3.4:+51246086 | MS.gene73152:intron |
| CTTCGGCAAATATTATATTT+GGG | 0.293271 | 3.4:+51255010 | MS.gene73152:CDS |
| TTACTTGCATTGTTGCAAAA+AGG | 0.295236 | 3.4:+51247495 | MS.gene73152:CDS |
| GTCGTTATTACATGTTTAAC+AGG | 0.301820 | 3.4:-51246735 | None:intergenic |
| TTTGCTTATACTTCCAAATC+TGG | 0.307028 | 3.4:+51248350 | MS.gene73152:CDS |
| TGAAAATATGGCTCCAGATT+TGG | 0.309235 | 3.4:-51248363 | None:intergenic |
| GATCTGTTAGTAGCATCTTT+TGG | 0.310323 | 3.4:-51255104 | None:intergenic |
| ATTACTTCAATTGATTCCTT+TGG | 0.312719 | 3.4:-51244115 | None:intergenic |
| GCAACAAAGCGTGTGAAATA+AGG | 0.317524 | 3.4:-51246959 | None:intergenic |
| ATGGGTGGAGGCACGGGGTC+TGG | 0.341711 | 3.4:+51253361 | MS.gene73152:CDS |
| AAAGCTCTGCCTCAACATTA+TGG | 0.347585 | 3.4:+51247961 | MS.gene73152:CDS |
| CTGATAATCATTGGGAGCTT+AGG | 0.354924 | 3.4:+51247534 | MS.gene73152:CDS |
| TGTAATAACGACGGAGCTTC+AGG | 0.355301 | 3.4:+51246746 | MS.gene73152:CDS |
| AGCTCAAGTAGATGAAAATA+TGG | 0.359330 | 3.4:-51248375 | None:intergenic |
| GAACCGAGGAGGATCGTTAG+AGG | 0.363403 | 3.4:-51246114 | None:intergenic |
| ACTTGCATTGAGGAATTTAG+AGG | 0.367286 | 3.4:+51244388 | MS.gene73152:CDS |
| GCTGGTATGGGTGGAGGCAC+GGG | 0.371048 | 3.4:+51253355 | MS.gene73152:CDS |
| ACATATCCCTTTAGCTTTGA+AGG | 0.373592 | 3.4:+51253445 | MS.gene73152:CDS |
| TAATTTGCAATAGGTGTTAC+CGG | 0.374216 | 3.4:+51249238 | MS.gene73152:intron |
| GGGATAGTATATAATATTAC+TGG | 0.374649 | 3.4:+51254534 | MS.gene73152:CDS |
| GCAAGTATACGGAGCCTTGC+TGG | 0.379476 | 3.4:+51248449 | MS.gene73152:CDS |
| AGGAAAAGACATAACTCTTC+AGG | 0.382999 | 3.4:+51254557 | MS.gene73152:CDS |
| AGTGTTTGTAACTGCTGGTA+TGG | 0.388284 | 3.4:+51253342 | MS.gene73152:CDS |
| GAGCTCCTGACTCGTGGATT+AGG | 0.391281 | 3.4:+51252771 | MS.gene73152:CDS |
| CAAGAAGCATGGCAAGTATA+CGG | 0.391715 | 3.4:+51248438 | MS.gene73152:CDS |
| TCATCTATTCAGTCAGCTAC+TGG | 0.395016 | 3.4:+51254513 | MS.gene73152:CDS |
| GATTTAGTGTTTGTAACTGC+TGG | 0.404828 | 3.4:+51253337 | MS.gene73152:CDS |
| TGCTGGTATGGGTGGAGGCA+CGG | 0.410369 | 3.4:+51253354 | MS.gene73152:CDS |
| ACTATTGCTAATGCTCTTCA+TGG | 0.413549 | 3.4:+51253310 | MS.gene73152:CDS |
| TGATAATCATTGGGAGCTTA+GGG | 0.413902 | 3.4:+51247535 | MS.gene73152:CDS |
| TTTGTTCTACATTGATGATA+AGG | 0.421492 | 3.4:+51246160 | MS.gene73152:CDS |
| TCAATAAGCTTTGCAGCCCT+TGG | 0.422147 | 3.4:-51255126 | None:intergenic |
| CATACCTGACATTGCAATCA+TGG | 0.422201 | 3.4:-51248795 | None:intergenic |
| GCAACAATGCAAGTAATGAT+AGG | 0.423196 | 3.4:-51247488 | None:intergenic |
| CTTCCAAGCCTGAGCTAGAA+TGG | 0.423482 | 3.4:-51249410 | None:intergenic |
| ACAGACTGTCTGATAATCAT+TGG | 0.424035 | 3.4:+51247525 | MS.gene73152:CDS |
| TTTGATATCCTGGCCACGAC+TGG | 0.424606 | 3.4:-51253391 | None:intergenic |
| TTGCGTCCTTCAAAGCTAAA+GGG | 0.429034 | 3.4:-51253451 | None:intergenic |
| TCAACTGACATGGAATTCAT+TGG | 0.433720 | 3.4:-51249271 | None:intergenic |
| ATTCTGAATATAAAGAAGAT+AGG | 0.434394 | 3.4:+51246691 | MS.gene73152:CDS |
| TTTGCGTCCTTCAAAGCTAA+AGG | 0.434956 | 3.4:-51253452 | None:intergenic |
| TTCATCTTCCATTCTAGCTC+AGG | 0.436710 | 3.4:+51249402 | MS.gene73152:CDS |
| GACTCTGGAACTGCAATGCT+TGG | 0.437859 | 3.4:+51254417 | MS.gene73152:CDS |
| GGAAGTGAATAGAGTTTCTC+AGG | 0.438800 | 3.4:+51254578 | MS.gene73152:CDS |
| ATGTCAAGCAGACGATCATT+TGG | 0.443168 | 3.4:-51254031 | None:intergenic |
| TGTTTGCTTTCTTGGCCCAC+AGG | 0.447832 | 3.4:-51255156 | None:intergenic |
| TAATGATAGGCGGCATCAAT+TGG | 0.451235 | 3.4:-51247475 | None:intergenic |
| GACAAGTTTAGCCGATCCTT+CGG | 0.452202 | 3.4:+51254993 | MS.gene73152:CDS |
| CATTCTAGCTCAGGCTTGGA+AGG | 0.460488 | 3.4:+51249411 | MS.gene73152:CDS |
| AGCTGCAGAACAAGCTACTT+TGG | 0.460703 | 3.4:+51254476 | MS.gene73152:CDS |
| GACTGGTAATTGATGTATCA+AGG | 0.462094 | 3.4:-51246338 | None:intergenic |
| AGGACGCAAAAGATCCTTGC+AGG | 0.465101 | 3.4:+51253465 | MS.gene73152:CDS |
| TGTCGGAATGTCATCATCAA+TGG | 0.465268 | 3.4:+51249351 | MS.gene73152:CDS |
| GTGCTGCTCCAGTCGTGGCC+AGG | 0.467776 | 3.4:+51253383 | MS.gene73152:CDS |
| CTTGAAGTATCACGAGTTTG+AGG | 0.478328 | 3.4:-51248758 | None:intergenic |
| TCCGACCTAATCCACGAGTC+AGG | 0.479972 | 3.4:-51252776 | None:intergenic |
| ACAAACATCAATTCCGCTAA+AGG | 0.479981 | 3.4:+51255176 | MS.gene73152:CDS |
| AGTCACTGGTTGGCTATTGA+AGG | 0.480890 | 3.4:+51246357 | MS.gene73152:CDS |
| GATGTATCAAGGGGTGCTTT+CGG | 0.481110 | 3.4:-51246327 | None:intergenic |
| TAAGAAAAGTTCTCATAGAA+TGG | 0.486637 | 3.4:-51244343 | None:intergenic |
| CTTCCATTCTAGCTCAGGCT+TGG | 0.489689 | 3.4:+51249407 | MS.gene73152:CDS |
| CGTGTGAAATAAGGAACTAA+AGG | 0.490751 | 3.4:-51246950 | None:intergenic |
| AATAGGTGTTACCGGGGTTG+TGG | 0.491143 | 3.4:+51249246 | MS.gene73152:intron |
| TAGAAGAGCATTGGTTACCT+TGG | 0.491722 | 3.4:+51246907 | MS.gene73152:CDS |
| AGGCCAAAATATGCATGAAA+AGG | 0.495373 | 3.4:+51248709 | MS.gene73152:CDS |
| CCCATCTTTCTACAGATACC+TGG | 0.495617 | 3.4:+51254351 | MS.gene73152:intron |
| ATCAAAGGAATAGCAGCTCT+TGG | 0.495915 | 3.4:+51247988 | MS.gene73152:CDS |
| GTGTTTGTAACTGCTGGTAT+GGG | 0.496706 | 3.4:+51253343 | MS.gene73152:CDS |
| TGATGATCAAACGCCTCTTA+CGG | 0.497471 | 3.4:+51254057 | MS.gene73152:CDS |
| GAAGTAATTGCACAAACCCT+TGG | 0.498511 | 3.4:+51244130 | MS.gene73152:CDS |
| TTCAATAGCCAACCAGTGAC+TGG | 0.500560 | 3.4:-51246355 | None:intergenic |
| AGACTGAAAGCATCCGTAAG+AGG | 0.500808 | 3.4:-51254070 | None:intergenic |
| TTCGGCAAATATTATATTTG+GGG | 0.503656 | 3.4:+51255011 | MS.gene73152:CDS |
| CGAATGCGATATTCAAGATC+GGG | 0.508044 | 3.4:-51244193 | None:intergenic |
| GTCGGAATGTCATCATCAAT+GGG | 0.509402 | 3.4:+51249352 | MS.gene73152:CDS |
| GTTACCTTGGCAACTGACTC+AGG | 0.510102 | 3.4:+51246920 | MS.gene73152:CDS |
| CACACGCTTTGTTGCTGATG+AGG | 0.515440 | 3.4:+51246967 | MS.gene73152:CDS |
| TTGGAAGGACTGTGAGAAGC+CGG | 0.515580 | 3.4:-51255085 | None:intergenic |
| AACTGTTGATGAAAAGTTTG+AGG | 0.519155 | 3.4:-51255199 | None:intergenic |
| CAACATTATGGTGCAATCAA+AGG | 0.519400 | 3.4:+51247973 | MS.gene73152:CDS |
| CAGACTGTCTGATAATCATT+GGG | 0.519806 | 3.4:+51247526 | MS.gene73152:CDS |
| TATAATATTTGCCGAAGGAT+CGG | 0.523726 | 3.4:-51255004 | None:intergenic |
| CTGGTATGGGTGGAGGCACG+GGG | 0.523953 | 3.4:+51253356 | MS.gene73152:CDS |
| GCTCCGCACAAGGCGCATCA+AGG | 0.526386 | 3.4:-51247133 | None:intergenic |
| TTGTTGACGAGCGCTACAGC+GGG | 0.527049 | 3.4:+51255037 | MS.gene73152:CDS |
| AAGATAAATTGTTGATGCCA+AGG | 0.527154 | 3.4:-51244147 | None:intergenic |
| ATACATCAATTACCAGTCAC+TGG | 0.528207 | 3.4:+51246343 | MS.gene73152:CDS |
| TTAGAGGCGAAACCATATAT+CGG | 0.532707 | 3.4:-51246098 | None:intergenic |
| AGTGGATTTCCCACCATGAT+GGG | 0.533896 | 3.4:+51249313 | MS.gene73152:CDS |
| GTCTGGTGCTGCTCCAGTCG+TGG | 0.534394 | 3.4:+51253378 | MS.gene73152:CDS |
| CACGTGACTCTCATTGCCAC+CGG | 0.536304 | 3.4:+51255066 | MS.gene73152:CDS |
| AGATAAATTGTTGATGCCAA+GGG | 0.538663 | 3.4:-51244146 | None:intergenic |
| AAGTGGATTTCCCACCATGA+TGG | 0.538961 | 3.4:+51249312 | MS.gene73152:CDS |
| TGAAATAAGGAACTAAAGGA+TGG | 0.539111 | 3.4:-51246946 | None:intergenic |
| AAAGCCATGATTGCAATGTC+AGG | 0.540326 | 3.4:+51248791 | MS.gene73152:CDS |
| GAAAAGTTTGAGGCCTTTAG+CGG | 0.542090 | 3.4:-51255189 | None:intergenic |
| TCGCCTCTAACGATCCTCCT+CGG | 0.544347 | 3.4:+51246111 | MS.gene73152:CDS |
| TTGTTGCTTTGATATGCAAA+AGG | 0.547154 | 3.4:+51247573 | MS.gene73152:CDS |
| TTGATACTGCACTTGCATTG+AGG | 0.548470 | 3.4:+51244378 | MS.gene73152:CDS |
| AATTTGCAATAGGTGTTACC+GGG | 0.548716 | 3.4:+51249239 | MS.gene73152:intron |
| GTTCTGCAGCTTCTTCAGCA+CGG | 0.548797 | 3.4:-51254464 | None:intergenic |
| GTAACTGCTGGTATGGGTGG+AGG | 0.550166 | 3.4:+51253349 | MS.gene73152:CDS |
| TCACCAAATAATTCAAACAC+TGG | 0.551360 | 3.4:-51249463 | None:intergenic |
| CCCGAAAATGCTCCACCTGA+AGG | 0.552810 | 3.4:+51246396 | MS.gene73152:CDS |
| CGTGATACTTCAAGTGGCAA+TGG | 0.554343 | 3.4:+51248767 | MS.gene73152:CDS |
| CGAAAAGCTGCAGCAGAATG+TGG | 0.555459 | 3.4:+51253991 | MS.gene73152:CDS |
| CATCTATTCAGTCAGCTACT+GGG | 0.556322 | 3.4:+51254514 | MS.gene73152:CDS |
| GAAGCTGGTTACTTAACTGT+TGG | 0.556775 | 3.4:+51253415 | MS.gene73152:CDS |
| ACAGGTAATTTGATATCCGC+AGG | 0.558264 | 3.4:-51246717 | None:intergenic |
| TCTAAATAATTACCTTCAGG+TGG | 0.562609 | 3.4:-51246408 | None:intergenic |
| GGAGTTTCTAATTCAAGTGT+CGG | 0.562659 | 3.4:+51249334 | MS.gene73152:CDS |
| ACGAATGCGATATTCAAGAT+CGG | 0.564445 | 3.4:-51244194 | None:intergenic |
| ATCAATTACCAGTCACTGGT+TGG | 0.567045 | 3.4:+51246347 | MS.gene73152:CDS |
| CAAACCTTTCAGTGTGCAGT+AGG | 0.568316 | 3.4:+51248689 | MS.gene73152:intron |
| CAAGATCGGGTGAAAGAGCA+AGG | 0.568699 | 3.4:-51244180 | None:intergenic |
| TCGCATTCGTGAAATTATGC+AGG | 0.568779 | 3.4:+51244207 | MS.gene73152:CDS |
| TTTGCAAAAGGCTCCGCACA+AGG | 0.569396 | 3.4:-51247143 | None:intergenic |
| GGATAGGTAATTTGCCTGCA+AGG | 0.569817 | 3.4:-51253479 | None:intergenic |
| AAAGCTGTGATGAAAGACTC+TGG | 0.570526 | 3.4:+51254402 | MS.gene73152:CDS |
| GCCAGGATATCAAAAGAAGC+TGG | 0.571214 | 3.4:+51253400 | MS.gene73152:CDS |
| AGATGCTACTAACAGATCCA+AGG | 0.571440 | 3.4:+51255109 | MS.gene73152:CDS |
| GTTGTTGACGAGCGCTACAG+CGG | 0.575320 | 3.4:+51255036 | MS.gene73152:CDS |
| TGGAAGGATGACATAGATGC+GGG | 0.576302 | 3.4:+51249427 | MS.gene73152:CDS |
| CTTGGAGTAGGTGTTTCCTC+CGG | 0.576476 | 3.4:+51254435 | MS.gene73152:CDS |
| TTTGTAACTGCTGGTATGGG+TGG | 0.578377 | 3.4:+51253346 | MS.gene73152:CDS |
| TGAATTAGAAACTCCCATCA+TGG | 0.578885 | 3.4:-51249326 | None:intergenic |
| ATTGGAGAGCTCCTGACTCG+TGG | 0.581021 | 3.4:+51252765 | MS.gene73152:CDS |
| GATACCTGGTCTTGTAAATG+TGG | 0.581169 | 3.4:+51254365 | MS.gene73152:intron |
| CTTTATCATATCAGGTGGCA+CGG | 0.581240 | 3.4:+51247082 | MS.gene73152:intron |
| ATGTCAGTTGACAACATGCA+AGG | 0.583459 | 3.4:+51249283 | MS.gene73152:CDS |
| TTGCCTTGATGCGCCTTGTG+CGG | 0.590106 | 3.4:+51247130 | MS.gene73152:CDS |
| GAGTCCTGAGTCAGTTGCCA+AGG | 0.592638 | 3.4:-51246924 | None:intergenic |
| TGAAAGAGCAAGGGCAACAT+CGG | 0.594849 | 3.4:-51244170 | None:intergenic |
| AACATGCAAGGGTCAACAAG+TGG | 0.594931 | 3.4:+51249295 | MS.gene73152:CDS |
| GGAACTGCAATGCTTGGAGT+AGG | 0.595218 | 3.4:+51254423 | MS.gene73152:CDS |
| AAATCCACATTTACAAGACC+AGG | 0.597382 | 3.4:-51254369 | None:intergenic |
| GCTTATTGACAGATTACCTG+TGG | 0.601239 | 3.4:+51255140 | MS.gene73152:CDS |
| GAAGATGAGTGTGATTCCAA+AGG | 0.610466 | 3.4:+51244099 | None:intergenic |
| TAAAGTTCTATGTGTATGTG+AGG | 0.610867 | 3.4:-51247168 | None:intergenic |
| GATGCTACTAACAGATCCAA+GGG | 0.611959 | 3.4:+51255110 | MS.gene73152:CDS |
| TTGATTGCACCATAATGTTG+AGG | 0.615431 | 3.4:-51247970 | None:intergenic |
| CTACATTGATGATAAGGATG+TGG | 0.617920 | 3.4:+51246166 | MS.gene73152:CDS |
| ACTGGTAATTGATGTATCAA+GGG | 0.618685 | 3.4:-51246337 | None:intergenic |
| TTGCATGTTGTCAACTGACA+TGG | 0.620617 | 3.4:-51249281 | None:intergenic |
| TTAGAAACTCCCATCATGGT+GGG | 0.623900 | 3.4:-51249322 | None:intergenic |
| TGTCAGTTGACAACATGCAA+GGG | 0.627299 | 3.4:+51249284 | MS.gene73152:CDS |
| CCAAATAATTCAAACACTGG+AGG | 0.639041 | 3.4:-51249460 | None:intergenic |
| AAAATTACAACTCACCAGCA+AGG | 0.639525 | 3.4:-51248463 | None:intergenic |
| CCAAATATAATATTTGCCGA+AGG | 0.643636 | 3.4:-51255009 | None:intergenic |
| CAAACTCGTGATACTTCAAG+TGG | 0.644887 | 3.4:+51248761 | MS.gene73152:CDS |
| ATAGTATATAATATTACTGG+AGG | 0.648111 | 3.4:+51254537 | MS.gene73152:CDS |
| TTGGAAGGATGACATAGATG+CGG | 0.651090 | 3.4:+51249426 | MS.gene73152:CDS |
| ATTAGAAACTCCCATCATGG+TGG | 0.651189 | 3.4:-51249323 | None:intergenic |
| ATTCATTGGTACCACAACCC+CGG | 0.667787 | 3.4:-51249257 | None:intergenic |
| GATAGTGATGCAGGTACTGG+TGG | 0.674873 | 3.4:+51253244 | MS.gene73152:intron |
| CTTATTGACAGATTACCTGT+GGG | 0.675733 | 3.4:+51255141 | MS.gene73152:CDS |
| TGTTAAACATGTAATAACGA+CGG | 0.677117 | 3.4:+51246737 | MS.gene73152:CDS |
| AAGATCGGGTGAAAGAGCAA+GGG | 0.679442 | 3.4:-51244179 | None:intergenic |
| TAAAGAAGATAGGCTTCCTG+CGG | 0.684917 | 3.4:+51246701 | MS.gene73152:CDS |
| GAAGGACTGTGAGAAGCCGG+TGG | 0.689459 | 3.4:-51255082 | None:intergenic |
| ACAATGCAAGTAATGATAGG+CGG | 0.692117 | 3.4:-51247485 | None:intergenic |
| AGAAATGTCTTTGTCACACG+TGG | 0.715446 | 3.4:-51247916 | None:intergenic |
| ATTTGCAATAGGTGTTACCG+GGG | 0.718659 | 3.4:+51249240 | MS.gene73152:intron |
| CTGGTAATTGATGTATCAAG+GGG | 0.729319 | 3.4:-51246336 | None:intergenic |
| TGTTGACGAGCGCTACAGCG+GGG | 0.759544 | 3.4:+51255038 | MS.gene73152:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 51244103 | 51255257 | 51244103 | ID=MS.gene73152 |
| chr3.4 | mRNA | 51244103 | 51255257 | 51244103 | ID=MS.gene73152.t1;Parent=MS.gene73152 |
| chr3.4 | exon | 51244103 | 51244228 | 51244103 | ID=MS.gene73152.t1.exon1;Parent=MS.gene73152.t1 |
| chr3.4 | CDS | 51244103 | 51244228 | 51244103 | ID=cds.MS.gene73152.t1;Parent=MS.gene73152.t1 |
| chr3.4 | exon | 51244323 | 51244409 | 51244323 | ID=MS.gene73152.t1.exon2;Parent=MS.gene73152.t1 |
| chr3.4 | CDS | 51244323 | 51244409 | 51244323 | ID=cds.MS.gene73152.t1;Parent=MS.gene73152.t1 |
| chr3.4 | exon | 51246098 | 51246199 | 51246098 | ID=MS.gene73152.t1.exon3;Parent=MS.gene73152.t1 |
| chr3.4 | CDS | 51246098 | 51246199 | 51246098 | ID=cds.MS.gene73152.t1;Parent=MS.gene73152.t1 |
| chr3.4 | exon | 51246309 | 51246417 | 51246309 | ID=MS.gene73152.t1.exon4;Parent=MS.gene73152.t1 |
| chr3.4 | CDS | 51246309 | 51246417 | 51246309 | ID=cds.MS.gene73152.t1;Parent=MS.gene73152.t1 |
| chr3.4 | exon | 51246673 | 51246767 | 51246673 | ID=MS.gene73152.t1.exon5;Parent=MS.gene73152.t1 |
| chr3.4 | CDS | 51246673 | 51246767 | 51246673 | ID=cds.MS.gene73152.t1;Parent=MS.gene73152.t1 |
| chr3.4 | exon | 51246851 | 51246988 | 51246851 | ID=MS.gene73152.t1.exon6;Parent=MS.gene73152.t1 |
| chr3.4 | CDS | 51246851 | 51246988 | 51246851 | ID=cds.MS.gene73152.t1;Parent=MS.gene73152.t1 |
| chr3.4 | exon | 51247096 | 51247191 | 51247096 | ID=MS.gene73152.t1.exon7;Parent=MS.gene73152.t1 |
| chr3.4 | CDS | 51247096 | 51247191 | 51247096 | ID=cds.MS.gene73152.t1;Parent=MS.gene73152.t1 |
| chr3.4 | exon | 51247470 | 51247594 | 51247470 | ID=MS.gene73152.t1.exon8;Parent=MS.gene73152.t1 |
| chr3.4 | CDS | 51247470 | 51247594 | 51247470 | ID=cds.MS.gene73152.t1;Parent=MS.gene73152.t1 |
| chr3.4 | exon | 51247888 | 51248020 | 51247888 | ID=MS.gene73152.t1.exon9;Parent=MS.gene73152.t1 |
| chr3.4 | CDS | 51247888 | 51248020 | 51247888 | ID=cds.MS.gene73152.t1;Parent=MS.gene73152.t1 |
| chr3.4 | exon | 51248345 | 51248470 | 51248345 | ID=MS.gene73152.t1.exon10;Parent=MS.gene73152.t1 |
| chr3.4 | CDS | 51248345 | 51248470 | 51248345 | ID=cds.MS.gene73152.t1;Parent=MS.gene73152.t1 |
| chr3.4 | exon | 51248701 | 51248812 | 51248701 | ID=MS.gene73152.t1.exon11;Parent=MS.gene73152.t1 |
| chr3.4 | CDS | 51248701 | 51248812 | 51248701 | ID=cds.MS.gene73152.t1;Parent=MS.gene73152.t1 |
| chr3.4 | exon | 51249251 | 51249487 | 51249251 | ID=MS.gene73152.t1.exon12;Parent=MS.gene73152.t1 |
| chr3.4 | CDS | 51249251 | 51249487 | 51249251 | ID=cds.MS.gene73152.t1;Parent=MS.gene73152.t1 |
| chr3.4 | exon | 51252700 | 51252792 | 51252700 | ID=MS.gene73152.t1.exon13;Parent=MS.gene73152.t1 |
| chr3.4 | CDS | 51252700 | 51252792 | 51252700 | ID=cds.MS.gene73152.t1;Parent=MS.gene73152.t1 |
| chr3.4 | exon | 51253257 | 51253486 | 51253257 | ID=MS.gene73152.t1.exon14;Parent=MS.gene73152.t1 |
| chr3.4 | CDS | 51253257 | 51253486 | 51253257 | ID=cds.MS.gene73152.t1;Parent=MS.gene73152.t1 |
| chr3.4 | exon | 51253977 | 51254144 | 51253977 | ID=MS.gene73152.t1.exon15;Parent=MS.gene73152.t1 |
| chr3.4 | CDS | 51253977 | 51254144 | 51253977 | ID=cds.MS.gene73152.t1;Parent=MS.gene73152.t1 |
| chr3.4 | exon | 51254366 | 51254599 | 51254366 | ID=MS.gene73152.t1.exon16;Parent=MS.gene73152.t1 |
| chr3.4 | CDS | 51254366 | 51254599 | 51254366 | ID=cds.MS.gene73152.t1;Parent=MS.gene73152.t1 |
| chr3.4 | exon | 51254988 | 51255257 | 51254988 | ID=MS.gene73152.t1.exon17;Parent=MS.gene73152.t1 |
| chr3.4 | CDS | 51254988 | 51255257 | 51254988 | ID=cds.MS.gene73152.t1;Parent=MS.gene73152.t1 |
| Gene Sequence |
| Protein sequence |
