Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73258.t1 | XP_004506639.1 | 47.3 | 465 | 120 | 9 | 6 | 347 | 9 | 471 | 9.90E-100 | 373.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73258.t1 | A0A1S2YLM9 | 47.3 | 465 | 120 | 9 | 6 | 347 | 9 | 471 | 7.2e-100 | 373.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052447 | MS.gene73258 | 0.803084 | 4.13E-49 | -1.69E-46 |
| MS.gene059458 | MS.gene73258 | 0.811211 | 7.84E-51 | -1.69E-46 |
| MS.gene059460 | MS.gene73258 | 0.811772 | 5.92E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73258.t1 | MTR_4g019310 | 46.667 | 465 | 121 | 9 | 8 | 348 | 6 | 467 | 3.64e-121 | 358 |
| MS.gene73258.t1 | MTR_4g019330 | 74.603 | 126 | 32 | 0 | 221 | 346 | 32 | 157 | 1.14e-61 | 196 |
| MS.gene73258.t1 | MTR_4g019340 | 31.828 | 465 | 195 | 14 | 3 | 348 | 30 | 491 | 1.71e-55 | 189 |
| MS.gene73258.t1 | MTR_4g017610 | 31.626 | 449 | 195 | 14 | 9 | 348 | 12 | 457 | 2.48e-53 | 182 |
| MS.gene73258.t1 | MTR_7g066350 | 31.221 | 426 | 189 | 12 | 10 | 343 | 9 | 422 | 3.65e-51 | 177 |
| MS.gene73258.t1 | MTR_4g017410 | 30.342 | 468 | 200 | 16 | 1 | 348 | 1 | 462 | 1.39e-50 | 176 |
| MS.gene73258.t1 | MTR_7g066260 | 32.243 | 428 | 189 | 14 | 10 | 343 | 15 | 435 | 3.16e-49 | 172 |
| MS.gene73258.t1 | MTR_4g017830 | 34.234 | 333 | 155 | 11 | 1 | 271 | 1 | 331 | 3.50e-49 | 173 |
| MS.gene73258.t1 | MTR_4g017830 | 28.718 | 195 | 96 | 7 | 10 | 177 | 267 | 445 | 7.43e-13 | 69.7 |
| MS.gene73258.t1 | MTR_7g012680 | 33.652 | 419 | 179 | 14 | 10 | 343 | 14 | 418 | 8.93e-49 | 170 |
| MS.gene73258.t1 | MTR_7g066570 | 35.759 | 316 | 141 | 7 | 13 | 274 | 17 | 324 | 1.15e-46 | 167 |
| MS.gene73258.t1 | MTR_7g066310 | 33.158 | 380 | 186 | 11 | 10 | 347 | 7 | 360 | 4.44e-46 | 162 |
| MS.gene73258.t1 | MTR_7g066290 | 31.204 | 407 | 192 | 11 | 10 | 343 | 15 | 406 | 3.40e-45 | 160 |
| MS.gene73258.t1 | MTR_7g066340 | 28.972 | 428 | 205 | 10 | 10 | 347 | 12 | 430 | 1.13e-44 | 160 |
| MS.gene73258.t1 | MTR_7g058710 | 32.743 | 339 | 140 | 9 | 2 | 274 | 4 | 320 | 4.08e-44 | 158 |
| MS.gene73258.t1 | MTR_7g063900 | 33.639 | 327 | 156 | 6 | 1 | 274 | 1 | 319 | 1.22e-42 | 154 |
| MS.gene73258.t1 | MTR_7g058700 | 32.398 | 392 | 167 | 15 | 22 | 343 | 531 | 894 | 3.88e-41 | 154 |
| MS.gene73258.t1 | MTR_4g017440 | 32.012 | 328 | 156 | 9 | 9 | 271 | 13 | 338 | 5.57e-41 | 150 |
| MS.gene73258.t1 | MTR_4g017440 | 29.213 | 178 | 89 | 7 | 21 | 177 | 285 | 446 | 7.26e-11 | 63.5 |
| MS.gene73258.t1 | MTR_4g017470 | 33.333 | 333 | 125 | 7 | 1 | 271 | 1 | 298 | 6.16e-41 | 150 |
| MS.gene73258.t1 | MTR_4g017470 | 28.497 | 193 | 103 | 6 | 9 | 177 | 233 | 414 | 5.47e-16 | 79.3 |
| MS.gene73258.t1 | MTR_7g063890 | 32.188 | 320 | 155 | 4 | 8 | 274 | 25 | 335 | 7.55e-41 | 150 |
| MS.gene73258.t1 | MTR_7g063880 | 29.252 | 441 | 205 | 10 | 2 | 343 | 3 | 435 | 9.01e-41 | 149 |
| MS.gene73258.t1 | MTR_1g014060 | 28.610 | 374 | 193 | 9 | 19 | 343 | 9 | 357 | 4.57e-39 | 143 |
| MS.gene73258.t1 | MTR_7g063660 | 31.487 | 343 | 167 | 7 | 6 | 293 | 5 | 334 | 3.63e-38 | 142 |
| MS.gene73258.t1 | MTR_7g063660 | 25.571 | 219 | 138 | 7 | 4 | 211 | 244 | 448 | 2.38e-11 | 65.1 |
| MS.gene73258.t1 | MTR_7g062300 | 27.938 | 451 | 196 | 11 | 8 | 343 | 10 | 446 | 4.21e-38 | 142 |
| MS.gene73258.t1 | MTR_3g007740 | 30.455 | 440 | 181 | 12 | 3 | 343 | 2 | 415 | 5.26e-38 | 141 |
| MS.gene73258.t1 | MTR_7g066580 | 34.495 | 287 | 145 | 10 | 16 | 269 | 1 | 277 | 5.41e-38 | 141 |
| MS.gene73258.t1 | MTR_7g066490 | 30.025 | 393 | 188 | 13 | 10 | 343 | 16 | 380 | 1.11e-37 | 140 |
| MS.gene73258.t1 | MTR_7g063670 | 29.977 | 437 | 180 | 13 | 8 | 343 | 13 | 424 | 1.22e-37 | 140 |
| MS.gene73258.t1 | MTR_4g017550 | 28.798 | 441 | 174 | 16 | 39 | 348 | 20 | 451 | 1.78e-36 | 137 |
| MS.gene73258.t1 | MTR_4g017550 | 30.303 | 231 | 107 | 10 | 10 | 212 | 247 | 451 | 8.56e-16 | 78.6 |
| MS.gene73258.t1 | MTR_7g066480 | 30.256 | 390 | 195 | 11 | 15 | 343 | 21 | 394 | 4.35e-36 | 135 |
| MS.gene73258.t1 | MTR_7g063840 | 30.422 | 332 | 158 | 8 | 1 | 274 | 1 | 317 | 2.54e-32 | 126 |
| MS.gene73258.t1 | MTR_7g063830 | 31.818 | 330 | 150 | 8 | 1 | 269 | 1 | 316 | 5.14e-32 | 125 |
| MS.gene73258.t1 | MTR_7g066430 | 28.529 | 333 | 170 | 7 | 10 | 279 | 4 | 331 | 1.15e-31 | 124 |
| MS.gene73258.t1 | MTR_7g063820 | 31.722 | 331 | 149 | 8 | 1 | 269 | 1 | 316 | 1.88e-31 | 124 |
| MS.gene73258.t1 | MTR_2g029400 | 31.313 | 297 | 123 | 8 | 10 | 275 | 14 | 260 | 2.07e-31 | 122 |
| MS.gene73258.t1 | MTR_7g063920 | 27.317 | 410 | 221 | 11 | 2 | 343 | 3 | 403 | 7.40e-31 | 121 |
| MS.gene73258.t1 | MTR_3g065200 | 26.877 | 413 | 192 | 13 | 10 | 338 | 3 | 389 | 4.07e-30 | 120 |
| MS.gene73258.t1 | MTR_7g062280 | 29.513 | 349 | 169 | 9 | 1 | 281 | 1 | 340 | 6.92e-30 | 119 |
| MS.gene73258.t1 | MTR_1g041315 | 33.014 | 209 | 129 | 4 | 10 | 212 | 14 | 217 | 2.86e-26 | 109 |
| MS.gene73258.t1 | MTR_1g041315 | 33.333 | 156 | 74 | 5 | 216 | 343 | 287 | 440 | 1.68e-15 | 77.8 |
| MS.gene73258.t1 | MTR_7g062270 | 35.135 | 185 | 102 | 3 | 1 | 177 | 1 | 175 | 3.39e-25 | 105 |
| MS.gene73258.t1 | MTR_7g066410 | 34.759 | 187 | 106 | 6 | 1 | 177 | 1 | 181 | 7.33e-25 | 105 |
| MS.gene73258.t1 | MTR_7g066360 | 31.863 | 204 | 130 | 3 | 13 | 212 | 17 | 215 | 5.32e-23 | 100 |
| MS.gene73258.t1 | MTR_7g066360 | 38.411 | 151 | 70 | 6 | 214 | 343 | 274 | 422 | 1.15e-16 | 81.3 |
| MS.gene73258.t1 | MTR_7g066280 | 31.532 | 222 | 109 | 6 | 93 | 275 | 1 | 218 | 3.76e-22 | 97.1 |
| MS.gene73258.t1 | MTR_4g019240 | 43.878 | 98 | 51 | 2 | 9 | 102 | 12 | 109 | 5.62e-20 | 86.7 |
| MS.gene73258.t1 | MTR_7g066400 | 29.268 | 205 | 110 | 4 | 10 | 212 | 12 | 183 | 9.81e-20 | 90.1 |
| MS.gene73258.t1 | MTR_1g115440 | 27.801 | 241 | 142 | 8 | 2 | 222 | 3 | 231 | 1.44e-16 | 78.6 |
| MS.gene73258.t1 | MTR_0150s0010 | 28.689 | 244 | 142 | 8 | 1 | 224 | 1 | 232 | 4.26e-15 | 74.3 |
| MS.gene73258.t1 | MTR_7g066680 | 30.729 | 192 | 73 | 5 | 216 | 348 | 95 | 285 | 4.69e-15 | 75.9 |
| MS.gene73258.t1 | MTR_8g445860 | 27.311 | 238 | 132 | 9 | 10 | 224 | 13 | 232 | 3.12e-14 | 72.0 |
| MS.gene73258.t1 | MTR_1g115450 | 30.263 | 152 | 82 | 5 | 10 | 154 | 7 | 141 | 4.72e-13 | 66.2 |
| MS.gene73258.t1 | MTR_8g445920 | 36.264 | 91 | 49 | 1 | 1 | 91 | 1 | 82 | 6.36e-13 | 65.1 |
| MS.gene73258.t1 | MTR_8g044890 | 36.264 | 91 | 49 | 1 | 1 | 91 | 1 | 82 | 6.36e-13 | 65.1 |
| MS.gene73258.t1 | MTR_0150s0030 | 38.202 | 89 | 45 | 2 | 10 | 97 | 8 | 87 | 1.44e-11 | 63.5 |
| MS.gene73258.t1 | MTR_1g115455 | 33.333 | 120 | 64 | 3 | 10 | 123 | 9 | 118 | 1.67e-11 | 63.9 |
| MS.gene73258.t1 | MTR_1g115470 | 35.106 | 94 | 52 | 1 | 10 | 103 | 6 | 90 | 4.62e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73258.t1 | AT5G01120 | 33.022 | 321 | 146 | 6 | 13 | 268 | 12 | 328 | 6.90e-42 | 153 |
| MS.gene73258.t1 | AT3G09110 | 32.390 | 318 | 150 | 5 | 10 | 269 | 9 | 319 | 2.05e-41 | 148 |
| MS.gene73258.t1 | AT3G09120 | 31.529 | 314 | 149 | 4 | 9 | 261 | 5 | 313 | 2.70e-37 | 136 |
| MS.gene73258.t1 | AT5G01130 | 29.907 | 428 | 211 | 9 | 8 | 353 | 7 | 427 | 2.12e-36 | 137 |
| MS.gene73258.t1 | AT5G01150 | 32.615 | 325 | 150 | 11 | 8 | 269 | 7 | 325 | 1.29e-35 | 135 |
| MS.gene73258.t1 | AT5G43240 | 32.923 | 325 | 148 | 6 | 11 | 269 | 10 | 330 | 3.09e-34 | 132 |
| MS.gene73258.t1 | AT5G43240 | 32.923 | 325 | 148 | 6 | 11 | 269 | 10 | 330 | 3.09e-34 | 132 |
| MS.gene73258.t1 | AT5G43240 | 32.923 | 325 | 148 | 6 | 11 | 269 | 10 | 330 | 3.09e-34 | 132 |
| MS.gene73258.t1 | AT3G09140 | 38.938 | 226 | 111 | 6 | 9 | 212 | 8 | 228 | 1.04e-33 | 130 |
| MS.gene73258.t1 | AT3G09140 | 38.938 | 226 | 111 | 6 | 9 | 212 | 8 | 228 | 1.85e-33 | 130 |
| MS.gene73258.t1 | AT5G01140 | 27.314 | 443 | 190 | 10 | 8 | 343 | 7 | 424 | 3.03e-32 | 126 |
| MS.gene73258.t1 | AT5G37320 | 43.269 | 104 | 56 | 1 | 20 | 123 | 19 | 119 | 2.15e-21 | 95.5 |
Find 57 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGTGTTTAGTATTTATTC+TGG | 0.088819 | 4.1:+78938424 | MS.gene73258:CDS |
| CAATATACCATTGGATGATT+TGG | 0.281046 | 4.1:+78939939 | MS.gene73258:CDS |
| GATATGTTGTGAGAAATTTA+TGG | 0.310909 | 4.1:+78938450 | MS.gene73258:CDS |
| GTGTGTTTAGTATTTATTCT+GGG | 0.332688 | 4.1:+78938425 | MS.gene73258:CDS |
| AATCATCCACATTCAACTTC+AGG | 0.334699 | 4.1:-78938360 | None:intergenic |
| AAAGTGCTTCAAAGCTTTCC+TGG | 0.336987 | 4.1:+78938565 | MS.gene73258:CDS |
| AAAACTACCATTGACACTTT+TGG | 0.338647 | 4.1:+78938066 | MS.gene73258:CDS |
| GTGTGGAAAATTTCAGTGAT+AGG | 0.349892 | 4.1:+78938266 | MS.gene73258:CDS |
| TTGTGAGAAATTTATGGTTC+AGG | 0.367812 | 4.1:+78938456 | MS.gene73258:CDS |
| CCACATTCAACTTCAGGTTC+TGG | 0.377519 | 4.1:-78938354 | None:intergenic |
| TTCCATTAGGAACCATCATT+AGG | 0.393853 | 4.1:+78938167 | MS.gene73258:CDS |
| AATGTGCATCATAGAGGTTT+TGG | 0.399001 | 4.1:+78938484 | MS.gene73258:CDS |
| CCAATTGTTTCTTGTTGTGA+TGG | 0.409417 | 4.1:-78938220 | None:intergenic |
| TCAATCCTTCATGTTTCATA+AGG | 0.411494 | 4.1:+78939755 | MS.gene73258:CDS |
| ATCCTAATGATGGTTCCTAA+TGG | 0.418326 | 4.1:-78938169 | None:intergenic |
| CTTACAAGTGAAGTACTTTG+TGG | 0.426269 | 4.1:-78938389 | None:intergenic |
| TTTGAGGCAAAATCTCCATA+TGG | 0.437503 | 4.1:+78939799 | MS.gene73258:CDS |
| TTGTCTACCAAAAGTGTCAA+TGG | 0.460192 | 4.1:-78938073 | None:intergenic |
| CCATCACAACAAGAAACAAT+TGG | 0.461803 | 4.1:+78938220 | MS.gene73258:CDS |
| CAACTTCAGGTTCTGGCAAA+GGG | 0.465388 | 4.1:-78938347 | None:intergenic |
| TGCTCTAGAACTGATCCAAC+AGG | 0.472921 | 4.1:-78939673 | None:intergenic |
| CTTAGACACAATCCTAATGA+TGG | 0.477121 | 4.1:-78938179 | None:intergenic |
| TATACCATTGGATGATTTGG+AGG | 0.480647 | 4.1:+78939942 | MS.gene73258:CDS |
| ACTTCACTTGTAAGATCTGT+GGG | 0.493236 | 4.1:+78938398 | MS.gene73258:CDS |
| CTTCACAAGCTCCAACAACT+TGG | 0.494709 | 4.1:+78938595 | MS.gene73258:CDS |
| AAGTGCTTCAAAGCTTTCCT+GGG | 0.495084 | 4.1:+78938566 | MS.gene73258:CDS |
| TGACATGCATTTCTATCAGC+TGG | 0.496465 | 4.1:-78938633 | None:intergenic |
| TTACAAGTGAAGTACTTTGT+GGG | 0.496614 | 4.1:-78938388 | None:intergenic |
| GCAAAAGCTCAATATACCAT+TGG | 0.497905 | 4.1:+78939930 | MS.gene73258:CDS |
| AGTTTCCTCACAACTCCTGT+TGG | 0.502430 | 4.1:+78939658 | MS.gene73258:CDS |
| AAAGGCCTTATGAAACATGA+AGG | 0.503766 | 4.1:-78939760 | None:intergenic |
| GCCATCACAATTTGTTGTGT+GGG | 0.513624 | 4.1:+78939855 | MS.gene73258:CDS |
| TGTGTTTAGTATTTATTCTG+GGG | 0.523933 | 4.1:+78938426 | MS.gene73258:CDS |
| TCAACTTCAGGTTCTGGCAA+AGG | 0.534593 | 4.1:-78938348 | None:intergenic |
| GGCCATCACAATTTGTTGTG+TGG | 0.538348 | 4.1:+78939854 | MS.gene73258:CDS |
| ACTTGTAAGATCTGTGGGGA+GGG | 0.550988 | 4.1:+78938403 | MS.gene73258:CDS |
| ATAAATTTAGCGGAGAGGTA+TGG | 0.556240 | 4.1:-78939998 | None:intergenic |
| AGCTTGTGAAGAGTGTTCCC+AGG | 0.569144 | 4.1:-78938583 | None:intergenic |
| TACTTCACTTGTAAGATCTG+TGG | 0.569378 | 4.1:+78938397 | MS.gene73258:CDS |
| TAATCTTCAAGTGACACCAT+TGG | 0.576349 | 4.1:+78939879 | MS.gene73258:CDS |
| TCAGTTCTAGAGCAATTGAA+TGG | 0.578611 | 4.1:+78939682 | MS.gene73258:CDS |
| CTACTCTAGGCATTGTGAAG+AGG | 0.587210 | 4.1:+78939833 | MS.gene73258:CDS |
| ATAGAAATGCATGTCACTGT+TGG | 0.599207 | 4.1:+78938640 | MS.gene73258:CDS |
| TGTCACTGTTGGTTTGAAAG+AGG | 0.602567 | 4.1:+78938651 | MS.gene73258:CDS |
| CTAGAAATATTATCATCCAA+TGG | 0.607733 | 4.1:-78939895 | None:intergenic |
| TCCCACACAACAAATTGTGA+TGG | 0.608209 | 4.1:-78939856 | None:intergenic |
| CACTTGTAAGATCTGTGGGG+AGG | 0.609311 | 4.1:+78938402 | MS.gene73258:CDS |
| TGCTCCTCCAAATCATCCAA+TGG | 0.610653 | 4.1:-78939946 | None:intergenic |
| CCAGAACCTGAAGTTGAATG+TGG | 0.612148 | 4.1:+78938354 | MS.gene73258:CDS |
| GTAGAGAATGTGCATCATAG+AGG | 0.634323 | 4.1:+78938478 | MS.gene73258:CDS |
| GGATGATTTGGAGGAGCATG+TGG | 0.640114 | 4.1:+78939951 | MS.gene73258:CDS |
| GGCGAGCATTAGAGAGACAC+AGG | 0.640715 | 4.1:+78939972 | MS.gene73258:CDS |
| TTGTTTCAGCTAAAACTACA+CGG | 0.647766 | 4.1:-78938105 | None:intergenic |
| CTGATCCAACAGGAGTTGTG+AGG | 0.651492 | 4.1:-78939663 | None:intergenic |
| ACAAGATAAATTTAGCGGAG+AGG | 0.670311 | 4.1:-78940003 | None:intergenic |
| AGGGACTCACAATTGTTGTG+TGG | 0.671588 | 4.1:-78938328 | None:intergenic |
| CTTCACTTGTAAGATCTGTG+GGG | 0.751493 | 4.1:+78938399 | MS.gene73258:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTCAAATTGGTATTT+TGG | + | chr4.1:78938747-78938766 | MS.gene73258:intron | 15.0% |
| !!! | CTGTTTATATTTTTAGATTT+TGG | + | chr4.1:78939420-78939439 | MS.gene73258:intron | 15.0% |
| !!! | TTTATTCAAATTGGTATTTT+GGG | + | chr4.1:78938748-78938767 | MS.gene73258:intron | 15.0% |
| !! | AGATATTTCAAAAATCCTTT+AGG | - | chr4.1:78939058-78939077 | None:intergenic | 20.0% |
| !!! | AAAAGATTCATGTCTTTTAA+AGG | - | chr4.1:78939781-78939800 | None:intergenic | 20.0% |
| !!! | AAAGAAAACAAGTTTTGAAA+TGG | + | chr4.1:78938771-78938790 | MS.gene73258:intron | 20.0% |
| !!! | GAAAAGTATTTGAAACTTTT+AGG | + | chr4.1:78938793-78938812 | MS.gene73258:intron | 20.0% |
| ! | AAAAAATCTTTACAAGAGTG+TGG | + | chr4.1:78938249-78938268 | MS.gene73258:CDS | 25.0% |
| ! | ACATTTCTTAATTGCAATTG+TGG | + | chr4.1:78938824-78938843 | MS.gene73258:intron | 25.0% |
| ! | ATATTGCATGTTATATGCAT+GGG | - | chr4.1:78939243-78939262 | None:intergenic | 25.0% |
| ! | ATTTACTTACTGTTACCTTA+AGG | - | chr4.1:78939582-78939601 | None:intergenic | 25.0% |
| ! | CTAGAAATATTATCATCCAA+TGG | - | chr4.1:78939898-78939917 | None:intergenic | 25.0% |
| ! | GATATGTTGTGAGAAATTTA+TGG | + | chr4.1:78938450-78938469 | MS.gene73258:CDS | 25.0% |
| ! | GTGTGTTTAGTATTTATTCT+GGG | + | chr4.1:78938425-78938444 | MS.gene73258:CDS | 25.0% |
| ! | TACTACTATTATGAACCTTA+AGG | + | chr4.1:78939564-78939583 | MS.gene73258:intron | 25.0% |
| ! | TGTGTTTAGTATTTATTCTG+GGG | + | chr4.1:78938426-78938445 | MS.gene73258:CDS | 25.0% |
| ! | TTAAAATACAATCACCATTG+TGG | - | chr4.1:78939138-78939157 | None:intergenic | 25.0% |
| ! | TTGAAATACATACATATGCA+TGG | + | chr4.1:78938721-78938740 | MS.gene73258:intron | 25.0% |
| !! | AAAAGACATGAATCTTTTTG+AGG | + | chr4.1:78939783-78939802 | MS.gene73258:CDS | 25.0% |
| !! | TTTTCTTTCATATTTGTGCA+CGG | - | chr4.1:78938050-78938069 | None:intergenic | 25.0% |
| !!! | GTAGATTCTATTTTTCCATA+TGG | - | chr4.1:78939817-78939836 | None:intergenic | 25.0% |
| !!! | TCAAAAATCCTTTAGGTTTT+GGG | - | chr4.1:78939051-78939070 | None:intergenic | 25.0% |
| !!! | TTCAAAAATCCTTTAGGTTT+TGG | - | chr4.1:78939052-78939071 | None:intergenic | 25.0% |
| !!! | TTGAATGGCATTTTTTCTTT+TGG | + | chr4.1:78939697-78939716 | MS.gene73258:CDS | 25.0% |
| AAAAACCATTTATGTTCCAC+CGG | - | chr4.1:78938943-78938962 | None:intergenic | 30.0% | |
| AAATACATACATATGCATGG+TGG | + | chr4.1:78938724-78938743 | MS.gene73258:intron | 30.0% | |
| ATAATAATGTGGAGGTCTTA+AGG | - | chr4.1:78939533-78939552 | None:intergenic | 30.0% | |
| CAATATACCATTGGATGATT+TGG | + | chr4.1:78939939-78939958 | MS.gene73258:CDS | 30.0% | |
| GATATTGCATGTTATATGCA+TGG | - | chr4.1:78939244-78939263 | None:intergenic | 30.0% | |
| GGAAAAATAGAATCTACTCT+AGG | + | chr4.1:78939820-78939839 | MS.gene73258:CDS | 30.0% | |
| GGTGTGTTTAGTATTTATTC+TGG | + | chr4.1:78938424-78938443 | MS.gene73258:CDS | 30.0% | |
| TCAATCCTTCATGTTTCATA+AGG | + | chr4.1:78939755-78939774 | MS.gene73258:CDS | 30.0% | |
| TTCCTTCATATTAACCACAA+TGG | + | chr4.1:78939121-78939140 | MS.gene73258:intron | 30.0% | |
| TTGTGAGAAATTTATGGTTC+AGG | + | chr4.1:78938456-78938475 | MS.gene73258:CDS | 30.0% | |
| TTGTTTCAGCTAAAACTACA+CGG | - | chr4.1:78938108-78938127 | None:intergenic | 30.0% | |
| ! | AAAACTACCATTGACACTTT+TGG | + | chr4.1:78938066-78938085 | MS.gene73258:CDS | 30.0% |
| ! | AGCTTTTATAATACCATTGC+GGG | - | chr4.1:78938877-78938896 | None:intergenic | 30.0% |
| ! | CAGCTTTTATAATACCATTG+CGG | - | chr4.1:78938878-78938897 | None:intergenic | 30.0% |
| ! | GACATCGTTGATATTTTGTT+TGG | + | chr4.1:78938133-78938152 | MS.gene73258:CDS | 30.0% |
| ! | TTACAAGTGAAGTACTTTGT+GGG | - | chr4.1:78938391-78938410 | None:intergenic | 30.0% |
| ! | TTTGAAATCTATGCATGCAA+TGG | + | chr4.1:78938960-78938979 | MS.gene73258:intron | 30.0% |
| !! | CATGGTGGATTTATTCAAAT+TGG | + | chr4.1:78938739-78938758 | MS.gene73258:intron | 30.0% |
| !! | CATTACTATTGTTTTGCCTA+TGG | - | chr4.1:78939174-78939193 | None:intergenic | 30.0% |
| !! | TGTTTTTGTAACCAAGTTGT+TGG | - | chr4.1:78938609-78938628 | None:intergenic | 30.0% |
| AACTTATTGTGCATGAGAAG+TGG | + | chr4.1:78939194-78939213 | MS.gene73258:intron | 35.0% | |
| AATCATCCACATTCAACTTC+AGG | - | chr4.1:78938363-78938382 | None:intergenic | 35.0% | |
| AATTGTGTCCCAAAACCTAA+AGG | + | chr4.1:78939040-78939059 | MS.gene73258:intron | 35.0% | |
| ACAAACTGAGTTAAGCTCAT+GGG | + | chr4.1:78939267-78939286 | MS.gene73258:intron | 35.0% | |
| ACTTATTGTGCATGAGAAGT+GGG | + | chr4.1:78939195-78939214 | MS.gene73258:intron | 35.0% | |
| ACTTCACTTGTAAGATCTGT+GGG | + | chr4.1:78938398-78938417 | MS.gene73258:CDS | 35.0% | |
| AGTGATGTATTCTTGGCAAA+TGG | + | chr4.1:78939481-78939500 | MS.gene73258:intron | 35.0% | |
| ATAGAAATGCATGTCACTGT+TGG | + | chr4.1:78938640-78938659 | MS.gene73258:CDS | 35.0% | |
| ATCCTAATGATGGTTCCTAA+TGG | - | chr4.1:78938172-78938191 | None:intergenic | 35.0% | |
| CACCATTGTGGTTAATATGA+AGG | - | chr4.1:78939126-78939145 | None:intergenic | 35.0% | |
| CCATCACAACAAGAAACAAT+TGG | + | chr4.1:78938220-78938239 | MS.gene73258:CDS | 35.0% | |
| CTTAGACACAATCCTAATGA+TGG | - | chr4.1:78938182-78938201 | None:intergenic | 35.0% | |
| GCAAAAGCTCAATATACCAT+TGG | + | chr4.1:78939930-78939949 | MS.gene73258:CDS | 35.0% | |
| GCAGTAGCATCATAATAATG+TGG | - | chr4.1:78939544-78939563 | None:intergenic | 35.0% | |
| GTAGCATCATAATAATGTGG+AGG | - | chr4.1:78939541-78939560 | None:intergenic | 35.0% | |
| GTGTGGAAAATTTCAGTGAT+AGG | + | chr4.1:78938266-78938285 | MS.gene73258:CDS | 35.0% | |
| TAATCTTCAAGTGACACCAT+TGG | + | chr4.1:78939879-78939898 | MS.gene73258:CDS | 35.0% | |
| TACAAACTGAGTTAAGCTCA+TGG | + | chr4.1:78939266-78939285 | MS.gene73258:intron | 35.0% | |
| TACTTCACTTGTAAGATCTG+TGG | + | chr4.1:78938397-78938416 | MS.gene73258:CDS | 35.0% | |
| TTCCATTAGGAACCATCATT+AGG | + | chr4.1:78938167-78938186 | MS.gene73258:CDS | 35.0% | |
| ! | AAAGGCCTTATGAAACATGA+AGG | - | chr4.1:78939763-78939782 | None:intergenic | 35.0% |
| ! | AATGTGCATCATAGAGGTTT+TGG | + | chr4.1:78938484-78938503 | MS.gene73258:CDS | 35.0% |
| ! | CCAATTGTTTCTTGTTGTGA+TGG | - | chr4.1:78938223-78938242 | None:intergenic | 35.0% |
| ! | CTTACAAGTGAAGTACTTTG+TGG | - | chr4.1:78938392-78938411 | None:intergenic | 35.0% |
| ! | GCTTTTATAATACCATTGCG+GGG | - | chr4.1:78938876-78938895 | None:intergenic | 35.0% |
| ! | TATACCATTGGATGATTTGG+AGG | + | chr4.1:78939942-78939961 | MS.gene73258:CDS | 35.0% |
| ! | TGTATTCGCTTGCATTTTGA+CGG | + | chr4.1:78938905-78938924 | MS.gene73258:intron | 35.0% |
| ! | TTAAGGAGAAAGGGTACAAT+AGG | - | chr4.1:78939516-78939535 | None:intergenic | 35.0% |
| ! | TTTGAGGCAAAATCTCCATA+TGG | + | chr4.1:78939799-78939818 | MS.gene73258:CDS | 35.0% |
| ! | TTTTCGTCATAGTGAATGCA+AGG | + | chr4.1:78938291-78938310 | MS.gene73258:CDS | 35.0% |
| !! | TCAGTTCTAGAGCAATTGAA+TGG | + | chr4.1:78939682-78939701 | MS.gene73258:CDS | 35.0% |
| !! | TTGTCTACCAAAAGTGTCAA+TGG | - | chr4.1:78938076-78938095 | None:intergenic | 35.0% |
| !!! | GAAGCTGGTTTTGTTAAGAA+GGG | + | chr4.1:78938514-78938533 | MS.gene73258:CDS | 35.0% |
| !!! | GTAGTTTTAGCTGAAACAAG+TGG | + | chr4.1:78938109-78938128 | MS.gene73258:CDS | 35.0% |
| !!! | TGAAGCTGGTTTTGTTAAGA+AGG | + | chr4.1:78938513-78938532 | MS.gene73258:CDS | 35.0% |
| AAGTGCTTCAAAGCTTTCCT+GGG | + | chr4.1:78938566-78938585 | MS.gene73258:CDS | 40.0% | |
| AATTGCCGGTGGAACATAAA+TGG | + | chr4.1:78938935-78938954 | MS.gene73258:intron | 40.0% | |
| CAAACTGAGTTAAGCTCATG+GGG | + | chr4.1:78939268-78939287 | MS.gene73258:intron | 40.0% | |
| CAATGGCATTGCAACAATTG+CGG | + | chr4.1:78938977-78938996 | MS.gene73258:intron | 40.0% | |
| CTTATTGTGCATGAGAAGTG+GGG | + | chr4.1:78939196-78939215 | MS.gene73258:intron | 40.0% | |
| CTTCACTTGTAAGATCTGTG+GGG | + | chr4.1:78938399-78938418 | MS.gene73258:CDS | 40.0% | |
| GACATTACAATCGCAATTGC+AGG | + | chr4.1:78939083-78939102 | MS.gene73258:intron | 40.0% | |
| GTAGAGAATGTGCATCATAG+AGG | + | chr4.1:78938478-78938497 | MS.gene73258:CDS | 40.0% | |
| TAATCGCAACATGAGACCAT+AGG | + | chr4.1:78939155-78939174 | MS.gene73258:intron | 40.0% | |
| TCCCACACAACAAATTGTGA+TGG | - | chr4.1:78939859-78939878 | None:intergenic | 40.0% | |
| TCCTCTGAGTGATGTATTCT+TGG | + | chr4.1:78939474-78939493 | MS.gene73258:intron | 40.0% | |
| TGACATGCATTTCTATCAGC+TGG | - | chr4.1:78938636-78938655 | None:intergenic | 40.0% | |
| TGCATGTTATATGCATGGGT+CGG | - | chr4.1:78939239-78939258 | None:intergenic | 40.0% | |
| ! | AAAGTGCTTCAAAGCTTTCC+TGG | + | chr4.1:78938565-78938584 | MS.gene73258:CDS | 40.0% |
| ! | GGTTTTCTCACACTTCCATT+AGG | + | chr4.1:78938154-78938173 | MS.gene73258:CDS | 40.0% |
| !! | GCCATCACAATTTGTTGTGT+GGG | + | chr4.1:78939855-78939874 | MS.gene73258:CDS | 40.0% |
| !! | TGCAAAAACCCTTTAGGTTG+CGG | - | chr4.1:78938851-78938870 | None:intergenic | 40.0% |
| !! | TGTCACTGTTGGTTTGAAAG+AGG | + | chr4.1:78938651-78938670 | MS.gene73258:CDS | 40.0% |
| !!! | TAGGTTTTGGGACACAATTG+CGG | - | chr4.1:78939039-78939058 | None:intergenic | 40.0% |
| AATTGTGGACCGCAACCTAA+AGG | + | chr4.1:78938839-78938858 | MS.gene73258:intron | 45.0% | |
| ACTTGTAAGATCTGTGGGGA+GGG | + | chr4.1:78938403-78938422 | MS.gene73258:CDS | 45.0% | |
| AGGGACTCACAATTGTTGTG+TGG | - | chr4.1:78938331-78938350 | None:intergenic | 45.0% | |
| AGTTTCCTCACAACTCCTGT+TGG | + | chr4.1:78939658-78939677 | MS.gene73258:CDS | 45.0% | |
| ATTGTGGACCGCAACCTAAA+GGG | + | chr4.1:78938840-78938859 | MS.gene73258:intron | 45.0% | |
| CATGTTATATGCATGGGTCG+GGG | - | chr4.1:78939237-78939256 | None:intergenic | 45.0% | |
| CCAGAACCTGAAGTTGAATG+TGG | + | chr4.1:78938354-78938373 | MS.gene73258:CDS | 45.0% | |
| CTTCACAAGCTCCAACAACT+TGG | + | chr4.1:78938595-78938614 | MS.gene73258:CDS | 45.0% | |
| GCATGTTATATGCATGGGTC+GGG | - | chr4.1:78939238-78939257 | None:intergenic | 45.0% | |
| GCCAAGAATACATCACTCAG+AGG | - | chr4.1:78939478-78939497 | None:intergenic | 45.0% | |
| GGGGATTGCAAAAACCCTTT+AGG | - | chr4.1:78938857-78938876 | None:intergenic | 45.0% | |
| GTGGAGGTCTTAAGGAGAAA+GGG | - | chr4.1:78939525-78939544 | None:intergenic | 45.0% | |
| TACATCACTCAGAGGAGACT+TGG | - | chr4.1:78939470-78939489 | None:intergenic | 45.0% | |
| TGCGGTTGCGATCAAAATGT+AGG | - | chr4.1:78939021-78939040 | None:intergenic | 45.0% | |
| TGCTCCTCCAAATCATCCAA+TGG | - | chr4.1:78939949-78939968 | None:intergenic | 45.0% | |
| TGTGGAGGTCTTAAGGAGAA+AGG | - | chr4.1:78939526-78939545 | None:intergenic | 45.0% | |
| ! | CAACTTCAGGTTCTGGCAAA+GGG | - | chr4.1:78938350-78938369 | None:intergenic | 45.0% |
| ! | CCACATTCAACTTCAGGTTC+TGG | - | chr4.1:78938357-78938376 | None:intergenic | 45.0% |
| ! | CTACTCTAGGCATTGTGAAG+AGG | + | chr4.1:78939833-78939852 | MS.gene73258:CDS | 45.0% |
| ! | TCAACTTCAGGTTCTGGCAA+AGG | - | chr4.1:78938351-78938370 | None:intergenic | 45.0% |
| !! | GGCCATCACAATTTGTTGTG+TGG | + | chr4.1:78939854-78939873 | MS.gene73258:CDS | 45.0% |
| !! | GGTTTTGGTGGAAATGAAGC+TGG | + | chr4.1:78938499-78938518 | MS.gene73258:CDS | 45.0% |
| !! | GTGCATCATAGAGGTTTTGG+TGG | + | chr4.1:78938487-78938506 | MS.gene73258:CDS | 45.0% |
| !! | TGCTCTAGAACTGATCCAAC+AGG | - | chr4.1:78939676-78939695 | None:intergenic | 45.0% |
| ATCACTCAGAGGAGACTTGG+AGG | - | chr4.1:78939467-78939486 | None:intergenic | 50.0% | |
| CACTTGTAAGATCTGTGGGG+AGG | + | chr4.1:78938402-78938421 | MS.gene73258:CDS | 50.0% | |
| CTGATCCAACAGGAGTTGTG+AGG | - | chr4.1:78939666-78939685 | None:intergenic | 50.0% | |
| TTGACGGCAACTGCAATTGC+CGG | + | chr4.1:78938921-78938940 | MS.gene73258:intron | 50.0% | |
| ! | GGATGATTTGGAGGAGCATG+TGG | + | chr4.1:78939951-78939970 | MS.gene73258:CDS | 50.0% |
| ! | GGTTTTTGCAATCCCCGCAA+TGG | + | chr4.1:78938861-78938880 | MS.gene73258:intron | 50.0% |
| !! | AGCTTGTGAAGAGTGTTCCC+AGG | - | chr4.1:78938586-78938605 | None:intergenic | 50.0% |
| GGCGAGCATTAGAGAGACAC+AGG | + | chr4.1:78939972-78939991 | MS.gene73258:CDS | 55.0% | |
| ! | TGCATGAGAAGTGGGGTGTC+CGG | + | chr4.1:78939203-78939222 | MS.gene73258:intron | 55.0% |
| ACGGCAACTGCAATTGCCGG+TGG | + | chr4.1:78938924-78938943 | MS.gene73258:intron | 60.0% | |
| ATGGGTCGGGGTTCAAACCC+CGG | - | chr4.1:78939225-78939244 | None:intergenic | 60.0% | |
| ! | CATGAGAAGTGGGGTGTCCG+GGG | + | chr4.1:78939205-78939224 | MS.gene73258:intron | 60.0% |
| ! | GCATGAGAAGTGGGGTGTCC+GGG | + | chr4.1:78939204-78939223 | MS.gene73258:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 78938040 | 78940014 | 78938040 | ID=MS.gene73258 |
| chr4.1 | mRNA | 78938040 | 78940014 | 78938040 | ID=MS.gene73258.t1;Parent=MS.gene73258 |
| chr4.1 | exon | 78938040 | 78938672 | 78938040 | ID=MS.gene73258.t1.exon1;Parent=MS.gene73258.t1 |
| chr4.1 | CDS | 78938040 | 78938672 | 78938040 | ID=cds.MS.gene73258.t1;Parent=MS.gene73258.t1 |
| chr4.1 | exon | 78939586 | 78940014 | 78939586 | ID=MS.gene73258.t1.exon2;Parent=MS.gene73258.t1 |
| chr4.1 | CDS | 78939586 | 78940014 | 78939586 | ID=cds.MS.gene73258.t1;Parent=MS.gene73258.t1 |
| Gene Sequence |
| Protein sequence |
