AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene73471

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73471.t1 MTR_1g108510 94.298 228 13 0 1 228 1 228 2.51e-165 455
MS.gene73471.t1 MTR_3g030770 92.544 228 17 0 1 228 1 228 5.44e-161 444
MS.gene73471.t1 MTR_2g093190 89.035 228 25 0 1 228 1 228 1.68e-153 425
MS.gene73471.t1 MTR_1g108580 87.719 228 28 0 1 228 1 228 2.97e-151 419
MS.gene73471.t1 MTR_1g105920 77.828 221 39 2 1 213 1 219 6.44e-120 341
MS.gene73471.t1 MTR_8g043650 74.892 231 48 2 1 223 1 229 8.63e-119 338
MS.gene73471.t1 MTR_1g105910 71.915 235 48 3 1 227 1 225 1.58e-115 330
MS.gene73471.t1 MTR_2g030740 74.208 221 47 2 1 213 1 219 4.00e-114 326
MS.gene73471.t1 MTR_1g012570 73.303 221 49 2 1 213 1 219 1.53e-112 322
MS.gene73471.t1 MTR_3g052920 72.851 221 50 2 1 213 1 219 5.80e-112 320
MS.gene73471.t1 MTR_0121s0080 69.362 235 54 3 1 227 1 225 3.68e-109 313
MS.gene73471.t1 MTR_1g075600 63.830 235 67 3 1 227 1 225 2.68e-101 293
MS.gene73471.t1 MTR_1g077360 62.128 235 71 3 1 227 1 225 1.37e-99 289
MS.gene73471.t1 MTR_1g105905 67.431 218 53 3 18 227 1 208 1.24e-98 286
MS.gene73471.t1 MTR_3g052870 69.953 213 51 3 1 213 1 200 1.44e-98 286
MS.gene73471.t1 MTR_5g045560 62.553 235 70 3 1 227 1 225 1.25e-96 281
MS.gene73471.t1 MTR_5g053390 62.128 235 71 4 1 227 1 225 2.61e-95 278
MS.gene73471.t1 MTR_1g106070 74.725 182 38 1 1 174 1 182 7.47e-94 273
MS.gene73471.t1 MTR_2g085280 60.000 235 76 3 1 227 1 225 4.00e-93 273
MS.gene73471.t1 MTR_2g085250 60.793 227 79 2 1 219 1 225 6.90e-93 272
MS.gene73471.t1 MTR_5g055100 60.426 235 75 3 1 227 1 225 1.21e-92 271
MS.gene73471.t1 MTR_7g062350 63.801 221 61 4 16 227 27 237 9.65e-89 262
MS.gene73471.t1 MTR_0121s0100 84.091 132 21 0 1 132 1 132 6.43e-77 228
MS.gene73471.t1 MTR_3g030780 73.485 132 35 0 1 132 1 132 9.25e-66 199
MS.gene73471.t1 MTR_3g080940 53.143 175 80 1 9 183 9 181 3.64e-61 191
MS.gene73471.t1 MTR_1g075570 58.989 178 51 2 18 187 1 164 4.76e-57 179
MS.gene73471.t1 MTR_3g067910 61.165 103 40 0 21 123 2 104 4.10e-40 134
MS.gene73471.t1 MTR_8g086290 41.818 165 86 2 5 166 8 165 5.42e-39 133
MS.gene73471.t1 MTR_2g105290 38.182 165 92 2 5 166 8 165 1.58e-34 121
MS.gene73471.t1 MTR_1g108500 57.522 113 25 2 8 118 94 185 1.30e-31 118
MS.gene73471.t1 MTR_7g028448 42.754 138 67 3 22 159 25 150 1.16e-29 108
MS.gene73471.t1 MTR_4g036915 42.754 138 67 3 22 159 25 150 1.16e-29 108
MS.gene73471.t1 MTR_3g067915 65.672 67 23 0 60 126 30 96 4.56e-25 94.7
MS.gene73471.t1 MTR_4g127140 36.571 175 91 4 5 166 8 175 8.84e-25 97.1
MS.gene73471.t1 MTR_3g067875 76.786 56 13 0 18 73 1 56 2.22e-24 92.4
MS.gene73471.t1 MTR_1g063160 45.536 112 56 3 9 118 2 110 2.21e-23 93.2
MS.gene73471.t1 MTR_8g079502 56.522 69 30 0 9 77 2 70 3.00e-22 90.1
MS.gene73471.t1 MTR_1g054265 51.948 77 37 0 9 85 2 78 3.50e-22 89.7
MS.gene73471.t1 MTR_1g047550 56.522 69 30 0 9 77 2 70 3.88e-22 89.7
MS.gene73471.t1 MTR_4g131030 36.765 136 71 3 9 129 2 137 5.81e-22 90.1
MS.gene73471.t1 MTR_8g051580 39.683 126 71 2 9 131 2 125 9.78e-21 86.3
MS.gene73471.t1 MTR_8g046350 37.692 130 73 3 9 135 2 126 2.22e-20 84.7
MS.gene73471.t1 MTR_3g005530 52.941 68 32 0 9 76 2 69 2.64e-20 85.9
MS.gene73471.t1 MTR_4g094632 38.679 106 63 1 9 114 2 105 2.85e-20 84.3
MS.gene73471.t1 MTR_4g094638 40.566 106 62 1 9 113 2 107 3.58e-20 84.7
MS.gene73471.t1 MTR_3g067870 61.905 63 24 0 16 78 83 145 9.25e-20 82.8
MS.gene73471.t1 MTR_4g102530 53.731 67 31 0 10 76 3 69 1.71e-19 83.6
MS.gene73471.t1 MTR_3g102570 45.098 102 53 3 9 109 2 101 2.45e-19 85.1
MS.gene73471.t1 MTR_3g452380 45.238 84 46 0 3 86 11 94 2.49e-19 84.0
MS.gene73471.t1 MTR_1g053070 48.148 81 42 0 9 89 2 82 4.18e-19 83.2
MS.gene73471.t1 MTR_8g033220 28.509 228 123 8 10 216 3 211 4.86e-19 82.8
MS.gene73471.t1 MTR_8g033220 28.509 228 123 8 10 216 3 211 5.48e-19 82.8
MS.gene73471.t1 MTR_8g033270 48.101 79 39 1 9 85 2 80 6.06e-19 82.8
MS.gene73471.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 1.34e-18 81.6
MS.gene73471.t1 MTR_4g093970 56.061 66 29 0 10 75 29 94 2.77e-18 80.9
MS.gene73471.t1 MTR_2g017865 36.641 131 77 3 9 134 17 146 2.78e-18 81.3
MS.gene73471.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 4.22e-18 81.3
MS.gene73471.t1 MTR_5g032520 27.982 218 130 6 10 205 3 215 5.46e-18 79.7
MS.gene73471.t1 MTR_8g087860 50.000 68 34 0 9 76 18 85 6.09e-18 80.1
MS.gene73471.t1 MTR_7g075870 50.746 67 33 0 10 76 3 69 6.28e-18 79.3
MS.gene73471.t1 MTR_8g022970 33.544 158 92 3 8 159 17 167 1.05e-17 78.2
MS.gene73471.t1 MTR_5g032150 47.059 68 36 0 9 76 2 69 2.65e-17 78.2
MS.gene73471.t1 MTR_1g101970 48.529 68 35 0 9 76 2 69 4.54e-17 76.6
MS.gene73471.t1 MTR_7g016600 50.704 71 32 2 7 76 2 70 4.63e-17 77.8
MS.gene73471.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 4.85e-17 77.8
MS.gene73471.t1 MTR_4g109830 44.928 69 37 1 9 76 2 70 8.30e-17 76.6
MS.gene73471.t1 MTR_0003s0590 48.529 68 35 0 9 76 2 69 8.97e-17 77.0
MS.gene73471.t1 MTR_7g075870 50.000 68 33 1 10 76 3 70 1.07e-16 76.3
MS.gene73471.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 1.16e-16 76.3
MS.gene73471.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 1.20e-16 76.6
MS.gene73471.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 1.72e-16 73.2
MS.gene73471.t1 MTR_6g464720 46.377 69 36 1 9 76 2 70 1.80e-16 76.3
MS.gene73471.t1 MTR_3g088615 47.143 70 35 1 9 76 2 71 2.76e-16 74.3
MS.gene73471.t1 MTR_4g084740 48.611 72 36 1 9 79 2 73 9.45e-16 75.1
MS.gene73471.t1 MTR_1g038300 48.571 70 34 1 9 76 2 71 9.99e-16 73.9
MS.gene73471.t1 MTR_8g066260 44.928 69 37 1 9 76 2 70 2.03e-15 73.2
MS.gene73471.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 3.01e-15 72.4
MS.gene73471.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 3.09e-15 72.4
MS.gene73471.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 3.60e-15 72.4
MS.gene73471.t1 MTR_7g075850 47.143 70 35 1 9 76 2 71 3.81e-15 72.4
MS.gene73471.t1 MTR_3g084980 47.826 69 35 1 9 76 2 70 3.89e-15 72.4
MS.gene73471.t1 MTR_2g461710 51.786 56 27 0 9 64 2 57 3.92e-15 67.8
MS.gene73471.t1 MTR_7g016630 42.029 69 39 1 9 76 2 70 6.81e-15 72.0
MS.gene73471.t1 MTR_4g109810 51.786 56 27 0 9 64 2 57 7.75e-15 71.6
MS.gene73471.t1 MTR_5g046790 42.029 69 39 1 9 76 2 70 7.75e-15 70.9
MS.gene73471.t1 MTR_3g113030 31.765 170 94 7 9 173 2 154 9.96e-15 71.2
MS.gene73471.t1 MTR_5g066960 47.368 57 30 0 9 65 2 58 1.34e-14 66.6
MS.gene73471.t1 MTR_1g029670 42.857 70 38 1 9 76 2 71 3.19e-14 68.6
MS.gene73471.t1 MTR_3g109930 34.058 138 79 3 27 159 20 150 3.56e-14 68.6
MS.gene73471.t1 MTR_4g108720 28.000 175 112 6 9 171 2 174 1.80e-13 68.9
MS.gene73471.t1 MTR_1g041615 35.514 107 60 2 20 125 17 115 7.46e-13 63.9
MS.gene73471.t1 MTR_3g437790 32.667 150 70 6 26 159 30 164 1.16e-12 64.7
MS.gene73471.t1 MTR_4g093030 29.936 157 75 5 9 135 2 153 1.62e-12 63.5
MS.gene73471.t1 MTR_4g036050 27.751 209 121 9 9 209 2 188 7.27e-12 62.4
MS.gene73471.t1 MTR_4g036050 29.730 185 107 7 9 186 2 170 9.29e-12 62.4
MS.gene73471.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.61e-11 61.2
MS.gene73471.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.75e-11 61.2
MS.gene73471.t1 MTR_4g051538 29.936 157 93 3 1 155 1 142 2.57e-11 61.6
MS.gene73471.t1 MTR_5g041650 39.189 74 43 1 9 80 39 112 9.43e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73471.t1 AT5G60440 53.514 185 79 3 4 181 2 186 1.19e-58 187
MS.gene73471.t1 AT2G24840 48.193 166 75 4 9 168 63 223 3.29e-43 146
MS.gene73471.t1 AT1G01530 44.565 184 94 4 4 183 2 181 5.54e-40 138
MS.gene73471.t1 AT4G36590 44.767 172 85 4 4 167 2 171 7.88e-39 135
MS.gene73471.t1 AT1G65360 41.530 183 100 4 4 181 2 182 8.42e-39 134
MS.gene73471.t1 AT2G34440 37.162 148 91 2 9 156 2 147 5.26e-27 102
MS.gene73471.t1 AT3G04100 31.579 190 118 3 2 183 7 192 4.10e-25 98.2
MS.gene73471.t1 AT3G66656 40.157 127 72 1 9 131 2 128 2.17e-24 95.5
MS.gene73471.t1 AT4G09960 38.971 136 73 4 9 137 2 134 1.03e-21 89.7
MS.gene73471.t1 AT4G09960 38.971 136 73 4 9 137 3 135 1.45e-21 89.7
MS.gene73471.t1 AT4G09960 38.971 136 73 4 9 137 2 134 1.45e-21 89.7
MS.gene73471.t1 AT4G09960 38.971 136 73 4 9 137 12 144 1.78e-21 89.7
MS.gene73471.t1 AT4G09960 38.406 138 75 4 9 139 28 162 2.35e-21 89.7
MS.gene73471.t1 AT1G28460 29.586 169 114 3 5 169 4 171 3.03e-21 87.4
MS.gene73471.t1 AT1G29962 29.240 171 115 2 5 169 4 174 6.17e-21 86.7
MS.gene73471.t1 AT1G72350 33.553 152 68 4 9 160 43 161 9.54e-21 87.4
MS.gene73471.t1 AT4G09960 39.416 137 71 5 5 134 95 226 1.20e-20 89.0
MS.gene73471.t1 AT2G45660 52.941 68 32 0 10 77 3 70 1.47e-20 85.1
MS.gene73471.t1 AT2G45650 52.941 68 32 0 9 76 2 69 5.46e-20 85.9
MS.gene73471.t1 AT2G45660 52.941 68 32 0 10 77 3 70 5.97e-20 84.7
MS.gene73471.t1 AT4G18960 40.187 107 54 1 2 108 11 107 3.24e-19 83.6
MS.gene73471.t1 AT3G57230 47.059 68 36 0 9 76 2 69 3.90e-19 80.9
MS.gene73471.t1 AT4G24540 35.135 148 79 4 9 156 2 132 7.22e-19 82.0
MS.gene73471.t1 AT5G10140 53.623 69 31 1 9 76 2 70 7.23e-19 80.9
MS.gene73471.t1 AT5G10140 53.623 69 31 1 9 76 2 70 1.18e-18 80.9
MS.gene73471.t1 AT5G10140 53.623 69 31 1 9 76 2 70 1.25e-18 80.9
MS.gene73471.t1 AT5G10140 53.623 69 31 1 9 76 2 70 1.37e-18 80.9
MS.gene73471.t1 AT4G22950 52.239 67 32 0 10 76 3 69 1.38e-18 80.1
MS.gene73471.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.59e-18 79.7
MS.gene73471.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.59e-18 79.7
MS.gene73471.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.59e-18 79.7
MS.gene73471.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.78e-18 81.6
MS.gene73471.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.78e-18 81.6
MS.gene73471.t1 AT5G62165 50.746 67 33 0 10 76 3 69 2.00e-18 78.2
MS.gene73471.t1 AT5G62165 50.746 67 33 0 10 76 3 69 2.13e-18 79.3
MS.gene73471.t1 AT5G62165 50.746 67 33 0 10 76 3 69 2.13e-18 79.3
MS.gene73471.t1 AT5G62165 50.746 67 33 0 10 76 3 69 2.13e-18 79.3
MS.gene73471.t1 AT5G62165 50.746 67 33 0 10 76 3 69 2.13e-18 79.3
MS.gene73471.t1 AT5G62165 50.746 67 33 0 10 76 3 69 2.13e-18 79.3
MS.gene73471.t1 AT3G57390 50.000 68 34 0 9 76 2 69 2.21e-18 80.9
MS.gene73471.t1 AT2G42830 49.333 75 36 1 2 76 12 84 2.46e-18 81.3
MS.gene73471.t1 AT2G42830 49.333 75 36 1 2 76 12 84 2.52e-18 81.3
MS.gene73471.t1 AT2G22540 50.000 68 34 0 9 76 2 69 3.07e-18 80.9
MS.gene73471.t1 AT2G22540 50.000 68 34 0 9 76 2 69 3.07e-18 80.9
MS.gene73471.t1 AT3G58780 49.333 75 36 1 2 76 12 84 4.51e-18 80.5
MS.gene73471.t1 AT3G57390 50.000 68 34 0 9 76 2 69 5.27e-18 80.5
MS.gene73471.t1 AT3G58780 49.333 75 36 1 2 76 18 90 5.54e-18 80.5
MS.gene73471.t1 AT5G51870 52.239 67 32 0 10 76 3 69 5.55e-18 78.6
MS.gene73471.t1 AT4G22950 52.239 67 32 0 10 76 3 69 6.35e-18 79.7
MS.gene73471.t1 AT4G22950 52.239 67 32 0 10 76 3 69 6.35e-18 79.7
MS.gene73471.t1 AT5G62165 50.746 67 33 0 10 76 3 69 6.82e-18 79.3
MS.gene73471.t1 AT5G62165 50.746 67 33 0 10 76 3 69 6.82e-18 79.3
MS.gene73471.t1 AT5G62165 50.746 67 33 0 10 76 3 69 6.82e-18 79.3
MS.gene73471.t1 AT5G62165 50.746 67 33 0 10 76 3 69 7.31e-18 79.0
MS.gene73471.t1 AT5G62165 50.746 67 33 0 10 76 3 69 7.31e-18 79.0
MS.gene73471.t1 AT4G37940 47.059 68 36 0 9 76 2 69 7.76e-18 79.7
MS.gene73471.t1 AT5G51870 52.239 67 32 0 10 76 3 69 7.84e-18 79.0
MS.gene73471.t1 AT3G58780 49.333 75 36 1 2 76 12 84 8.52e-18 80.5
MS.gene73471.t1 AT4G37940 47.059 68 36 0 9 76 2 69 8.75e-18 79.0
MS.gene73471.t1 AT4G37940 47.059 68 36 0 9 76 2 69 1.28e-17 77.8
MS.gene73471.t1 AT5G51870 52.239 67 32 0 10 76 3 69 1.48e-17 78.6
MS.gene73471.t1 AT5G51870 52.239 67 32 0 10 76 26 92 1.48e-17 78.2
MS.gene73471.t1 AT5G51870 52.239 67 32 0 10 76 13 79 1.91e-17 78.6
MS.gene73471.t1 AT5G13790 50.000 68 34 0 9 76 2 69 3.52e-17 78.6
MS.gene73471.t1 AT5G13790 50.000 68 34 0 9 76 2 69 3.74e-17 78.6
MS.gene73471.t1 AT5G65050 49.275 69 34 1 9 76 2 70 5.02e-17 76.3
MS.gene73471.t1 AT4G11880 50.000 68 33 1 10 76 3 70 9.55e-17 75.5
MS.gene73471.t1 AT4G11880 50.000 68 33 1 10 76 3 70 9.55e-17 75.5
MS.gene73471.t1 AT1G77980 51.389 72 34 1 9 79 2 73 1.05e-16 78.2
MS.gene73471.t1 AT1G28450 28.235 170 114 4 5 167 4 172 1.09e-16 75.5
MS.gene73471.t1 AT5G15800 49.275 69 34 1 9 76 2 70 1.29e-16 76.6
MS.gene73471.t1 AT5G65050 49.275 69 34 1 9 76 2 70 1.67e-16 75.1
MS.gene73471.t1 AT5G65050 49.275 69 34 1 9 76 2 70 1.70e-16 75.1
MS.gene73471.t1 AT1G22130 39.785 93 55 1 9 100 2 94 1.71e-16 77.4
MS.gene73471.t1 AT5G65050 49.275 69 34 1 9 76 2 70 1.83e-16 74.7
MS.gene73471.t1 AT5G20240 46.575 73 37 1 9 79 2 74 1.94e-16 73.9
MS.gene73471.t1 AT4G11880 50.000 68 33 1 10 76 3 70 2.19e-16 75.5
MS.gene73471.t1 AT4G11880 50.000 68 33 1 10 76 3 70 2.19e-16 75.5
MS.gene73471.t1 AT5G15800 49.275 69 34 1 9 76 2 70 2.32e-16 76.3
MS.gene73471.t1 AT5G20240 46.575 73 37 1 9 79 2 74 2.35e-16 75.1
MS.gene73471.t1 AT1G26310 47.887 71 34 2 7 76 2 70 3.13e-16 75.9
MS.gene73471.t1 AT3G30260 44.928 69 37 1 9 76 2 70 3.45e-16 75.5
MS.gene73471.t1 AT5G51860 49.254 67 34 0 10 76 3 69 4.52e-16 74.3
MS.gene73471.t1 AT5G51860 49.254 67 34 0 10 76 3 69 5.52e-16 74.3
MS.gene73471.t1 AT1G69120 47.887 71 34 2 7 76 2 70 7.95e-16 74.3
MS.gene73471.t1 AT1G77950 47.222 72 37 1 9 79 2 73 8.42e-16 74.3
MS.gene73471.t1 AT1G77950 47.222 72 37 1 9 79 2 73 8.42e-16 74.3
MS.gene73471.t1 AT1G77950 47.222 72 37 1 9 79 2 73 8.42e-16 74.3
MS.gene73471.t1 AT1G77950 47.222 72 37 1 9 79 2 73 8.42e-16 74.3
MS.gene73471.t1 AT3G02310 47.826 69 35 1 9 76 2 70 8.67e-16 73.6
MS.gene73471.t1 AT2G22540 49.254 67 29 1 10 76 3 64 8.67e-16 73.9
MS.gene73471.t1 AT3G61120 45.588 68 37 0 9 76 2 69 9.50e-16 74.3
MS.gene73471.t1 AT5G65060 47.826 69 35 1 9 76 2 70 9.78e-16 73.2
MS.gene73471.t1 AT3G54340 33.835 133 74 5 9 128 2 133 9.95e-16 73.9
MS.gene73471.t1 AT3G58780 52.308 65 29 1 2 66 12 74 1.05e-15 73.9
MS.gene73471.t1 AT2G03710 48.571 70 34 2 9 76 2 71 1.07e-15 72.8
MS.gene73471.t1 AT2G14210 43.478 69 38 1 9 76 2 70 1.15e-15 73.9
MS.gene73471.t1 AT5G23260 50.000 80 36 2 2 77 9 88 1.33e-15 74.3
MS.gene73471.t1 AT5G23260 50.000 80 36 2 2 77 9 88 1.40e-15 73.9
MS.gene73471.t1 AT3G58780 52.308 65 29 1 2 66 12 74 1.44e-15 73.9
MS.gene73471.t1 AT5G65060 47.826 69 35 1 9 76 2 70 1.47e-15 72.4
MS.gene73471.t1 AT2G14210 43.478 69 38 1 9 76 2 70 1.52e-15 73.6
MS.gene73471.t1 AT5G60910 44.928 69 37 1 9 76 2 70 1.56e-15 73.6
MS.gene73471.t1 AT5G65060 47.826 69 35 1 9 76 2 70 1.74e-15 72.4
MS.gene73471.t1 AT5G23260 52.113 71 32 1 9 77 2 72 1.99e-15 73.6
MS.gene73471.t1 AT5G23260 52.113 71 32 1 9 77 2 72 2.02e-15 73.2
MS.gene73471.t1 AT5G65070 42.029 69 39 1 9 76 2 70 2.42e-15 70.9
MS.gene73471.t1 AT1G69120 46.377 69 36 1 9 76 2 70 2.48e-15 73.2
MS.gene73471.t1 AT3G02310 47.826 69 35 1 9 76 2 70 2.70e-15 73.2
MS.gene73471.t1 AT2G03710 48.571 70 34 2 9 76 2 71 3.92e-15 72.8
MS.gene73471.t1 AT1G24260 46.377 69 36 1 9 76 2 70 4.00e-15 72.4
MS.gene73471.t1 AT1G24260 46.377 69 36 1 9 76 2 70 4.09e-15 72.4
MS.gene73471.t1 AT2G03710 48.571 70 34 2 9 76 2 71 4.17e-15 72.8
MS.gene73471.t1 AT1G24260 46.377 69 36 1 9 76 2 70 4.17e-15 72.4
MS.gene73471.t1 AT5G65070 42.029 69 39 1 9 76 2 70 4.52e-15 71.6
MS.gene73471.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.16e-14 70.9
MS.gene73471.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.26e-14 70.5
MS.gene73471.t1 AT2G22630 42.647 68 39 0 9 76 2 69 1.47e-14 70.5
MS.gene73471.t1 AT2G22630 42.647 68 39 0 9 76 2 69 1.47e-14 70.5
MS.gene73471.t1 AT1G17310 51.899 79 36 1 8 86 47 123 1.71e-14 70.1
MS.gene73471.t1 AT1G17310 51.899 79 36 1 8 86 58 134 2.33e-14 70.1
MS.gene73471.t1 AT1G47760 41.791 67 39 0 9 75 2 68 3.39e-14 68.9
MS.gene73471.t1 AT1G18750 41.333 75 42 1 9 81 2 76 5.66e-14 70.5
MS.gene73471.t1 AT1G18750 41.333 75 42 1 9 81 2 76 6.44e-14 70.5
MS.gene73471.t1 AT1G18750 41.333 75 42 1 9 81 2 76 6.47e-14 70.5
MS.gene73471.t1 AT1G71692 44.928 69 37 1 10 77 3 71 6.86e-14 68.6
MS.gene73471.t1 AT5G65070 47.368 57 30 0 9 65 2 58 9.81e-14 68.6
MS.gene73471.t1 AT5G65080 42.029 69 39 1 9 76 9 77 2.27e-13 66.6
MS.gene73471.t1 AT5G65080 48.148 54 28 0 9 62 9 62 1.37e-12 64.7
MS.gene73471.t1 AT1G77080 50.725 69 33 1 9 76 2 70 2.55e-12 63.5
MS.gene73471.t1 AT4G37435 40.845 71 41 1 9 78 2 72 2.58e-12 63.5
MS.gene73471.t1 AT1G77080 50.725 69 33 1 9 76 2 70 2.82e-12 63.2
MS.gene73471.t1 AT2G03060 28.824 170 96 8 9 159 2 165 4.86e-12 65.1
MS.gene73471.t1 AT2G03060 28.824 170 96 8 9 159 2 165 4.86e-12 65.1
MS.gene73471.t1 AT2G03060 28.824 170 96 8 9 159 2 165 4.86e-12 65.1
MS.gene73471.t1 AT2G03060 28.824 170 96 8 9 159 2 165 5.35e-12 64.7
MS.gene73471.t1 AT1G77080 50.725 69 33 1 9 76 2 70 7.81e-12 62.8
MS.gene73471.t1 AT1G77080 50.725 69 33 1 9 76 2 70 2.08e-11 62.0
MS.gene73471.t1 AT1G69540 40.541 74 43 1 9 81 2 75 2.65e-11 62.8
MS.gene73471.t1 AT1G69540 39.474 76 45 1 9 83 2 77 3.42e-11 62.4
MS.gene73471.t1 AT5G49420 35.106 94 54 2 5 91 3 96 5.47e-11 61.6

Find 49 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTTGAATTATTCAAAA+AGG 0.249457 1.4:+83317685 MS.gene73471:CDS
TTGCAGCCTCATTTGTTTGA+TGG 0.293834 1.4:+83317872 MS.gene73471:CDS
TGGTGGGCTTGTCCGGTTGA+TGG 0.317499 1.4:+83317650 MS.gene73471:CDS
TCACCATGGCTTCAATAATA+TGG 0.324358 1.4:+83317907 MS.gene73471:CDS
ATTTCAACTTGTTGAGCATT+TGG 0.333632 1.4:-83317812 None:intergenic
CCTCCGTTTCCTTGAGCAAA+TGG 0.377544 1.4:-83317619 None:intergenic
GTCTATGACCGTATCAAGAT+TGG 0.398383 1.4:-83317447 None:intergenic
CTTTCTCAAAGCGCCGTAAC+GGG 0.409500 1.4:+83317327 MS.gene73471:CDS
TCCGGTTGATGGGATGAATA+GGG 0.429925 1.4:+83317661 MS.gene73471:CDS
GTCCGGTTGATGGGATGAAT+AGG 0.433236 1.4:+83317660 MS.gene73471:CDS
GGTGGGCTTGTCCGGTTGAT+GGG 0.441656 1.4:+83317651 MS.gene73471:CDS
TCTATGACCGTATCAAGATT+GGG 0.446553 1.4:-83317446 None:intergenic
AGGAAACGGAGGCTAAGTTT+TGG 0.457330 1.4:+83317630 MS.gene73471:CDS
CATAGACCGCTATCTTTCTC+TGG 0.460785 1.4:+83317463 MS.gene73471:CDS
AGTGAGCTTTGCACCCTTTG+TGG 0.471832 1.4:+83317365 MS.gene73471:CDS
GCCTTTCCTTGCACTCGACA+TGG 0.474891 1.4:-83317246 None:intergenic
GTTGAGCATTTGGCTGATGA+TGG 0.476508 1.4:-83317802 None:intergenic
TCCCTATTCATCCCATCAAC+CGG 0.481029 1.4:-83317662 None:intergenic
TGAGGCTGCAATTGCAACAT+AGG 0.486430 1.4:-83317860 None:intergenic
ACTTTCTCAAAGCGCCGTAA+CGG 0.489334 1.4:+83317326 MS.gene73471:CDS
GAGCCATTTGCTCAAGGAAA+CGG 0.489556 1.4:+83317616 MS.gene73471:CDS
AGCAGCATCTGCACCACAAA+GGG 0.494828 1.4:-83317378 None:intergenic
ACACCATATTATTGAAGCCA+TGG 0.549763 1.4:-83317910 None:intergenic
TGGTCACCCCAATCTTGATA+CGG 0.553864 1.4:+83317439 MS.gene73471:CDS
ATTGATCCATCAAACAAATG+AGG 0.563188 1.4:-83317878 None:intergenic
CCTTCTTGAAGAGCCCGTTA+CGG 0.572175 1.4:-83317340 None:intergenic
CTTCAGCCATGTCGAGTGCA+AGG 0.573469 1.4:+83317240 None:intergenic
GAGGCTGCAATTGCAACATA+GGG 0.578323 1.4:-83317859 None:intergenic
ATCAAGATTGGGGTGACCAA+AGG 0.581678 1.4:-83317435 None:intergenic
CCGTAACGGGCTCTTCAAGA+AGG 0.583842 1.4:+83317340 MS.gene73471:CDS
CGGCACCATGCAACTCATTG+AGG 0.589770 1.4:+83317502 MS.gene73471:CDS
CTAGTTGTATTCTCGCCTAG+TGG 0.592221 1.4:+83317401 MS.gene73471:CDS
TCGAGTGCAAGGAAAGGCCG+AGG 0.595815 1.4:+83317251 MS.gene73471:CDS
TGAGCTGAGCCATTTGCTCA+AGG 0.597593 1.4:+83317610 MS.gene73471:CDS
AGCATTGAGTTCACGAACGT+TGG 0.603238 1.4:-83317537 None:intergenic
TGTATTCTCGCCTAGTGGAA+AGG 0.608216 1.4:+83317406 MS.gene73471:CDS
ATGATGGAGATAAATGTTCG+AGG 0.611297 1.4:-83317786 None:intergenic
GAGCAGCATCTGCACCACAA+AGG 0.621182 1.4:-83317379 None:intergenic
GCCATGTCGAGTGCAAGGAA+AGG 0.627385 1.4:+83317245 None:intergenic
AAGGAAAATACCTTTCCACT+AGG 0.627897 1.4:-83317416 None:intergenic
GTTCACGAACGTTGGCATTG+CGG 0.638735 1.4:-83317529 None:intergenic
CTATGACCGTATCAAGATTG+GGG 0.641126 1.4:-83317445 None:intergenic
ATATTATTGAAGCCATGGTG+AGG 0.642989 1.4:-83317905 None:intergenic
GACTCAAATCAACAACACGC+TGG 0.644948 1.4:+83317565 MS.gene73471:CDS
GTGAGCCTCAATGAGTTGCA+TGG 0.660003 1.4:-83317507 None:intergenic
CCATTTGCTCAAGGAAACGG+AGG 0.676667 1.4:+83317619 MS.gene73471:CDS
GTGGTACCAGAGAAAGATAG+CGG 0.703250 1.4:-83317469 None:intergenic
CTGGTACCACCACAAAACAA+CGG 0.718153 1.4:+83317482 MS.gene73471:CDS
GGATCAATGATGCCTCACCA+TGG 0.734402 1.4:+83317893 MS.gene73471:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAACTTGAATTATTCAAAA+AGG + chr1.4:83317685-83317704 MS.gene73471:CDS 20.0%
! TGAATTATTCAAAAAGGCTT+TGG + chr1.4:83317691-83317710 MS.gene73471:CDS 25.0%
!!! ATAGGGTTTTGAAAAAATTG+TGG - chr1.4:83317845-83317864 None:intergenic 25.0%
!!! TCTTTTTCATCTCAATCTTT+TGG - chr1.4:83317280-83317299 None:intergenic 25.0%
ATTGATCCATCAAACAAATG+AGG - chr1.4:83317881-83317900 None:intergenic 30.0%
! ATTATTCAAAAAGGCTTTGG+AGG + chr1.4:83317694-83317713 MS.gene73471:CDS 30.0%
! TTTTCATCTCAATCTTTTGG+CGG - chr1.4:83317277-83317296 None:intergenic 30.0%
!! ATTTCAACTTGTTGAGCATT+TGG - chr1.4:83317815-83317834 None:intergenic 30.0%
!!! CAAACTCATCCATTTTTTGT+TGG + chr1.4:83317752-83317771 MS.gene73471:CDS 30.0%
AAGGAAAATACCTTTCCACT+AGG - chr1.4:83317419-83317438 None:intergenic 35.0%
ACACCATATTATTGAAGCCA+TGG - chr1.4:83317913-83317932 None:intergenic 35.0%
ATATTATTGAAGCCATGGTG+AGG - chr1.4:83317908-83317927 None:intergenic 35.0%
TCACCATGGCTTCAATAATA+TGG + chr1.4:83317907-83317926 MS.gene73471:CDS 35.0%
TCTATGACCGTATCAAGATT+GGG - chr1.4:83317449-83317468 None:intergenic 35.0%
! ATGATGGAGATAAATGTTCG+AGG - chr1.4:83317789-83317808 None:intergenic 35.0%
!!! AGTGGAAAGGTATTTTCCTT+TGG + chr1.4:83317419-83317438 MS.gene73471:CDS 35.0%
!!! GGGTTTTGAAAAAATTGTGG+TGG - chr1.4:83317842-83317861 None:intergenic 35.0%
CTATGACCGTATCAAGATTG+GGG - chr1.4:83317448-83317467 None:intergenic 40.0%
GTCTATGACCGTATCAAGAT+TGG - chr1.4:83317450-83317469 None:intergenic 40.0%
TTGCAGCCTCATTTGTTTGA+TGG + chr1.4:83317872-83317891 MS.gene73471:CDS 40.0%
! CTCATCGCCAATCTTTTTCT+CGG - chr1.4:83317594-83317613 None:intergenic 40.0%
!! GAAGCGTTGCCAACAAAAAA+TGG - chr1.4:83317764-83317783 None:intergenic 40.0%
ATCAAGATTGGGGTGACCAA+AGG - chr1.4:83317438-83317457 None:intergenic 45.0%
CATAGACCGCTATCTTTCTC+TGG + chr1.4:83317463-83317482 MS.gene73471:CDS 45.0%
CTAGTTGTATTCTCGCCTAG+TGG + chr1.4:83317401-83317420 MS.gene73471:CDS 45.0%
CTGGATGCCGAGAAAAAGAT+TGG + chr1.4:83317584-83317603 MS.gene73471:CDS 45.0%
CTGGTACCACCACAAAACAA+CGG + chr1.4:83317482-83317501 MS.gene73471:CDS 45.0%
GACTCAAATCAACAACACGC+TGG + chr1.4:83317565-83317584 MS.gene73471:CDS 45.0%
GAGCCATTTGCTCAAGGAAA+CGG + chr1.4:83317616-83317635 MS.gene73471:CDS 45.0%
GAGGCTGCAATTGCAACATA+GGG - chr1.4:83317862-83317881 None:intergenic 45.0%
GTGGTACCAGAGAAAGATAG+CGG - chr1.4:83317472-83317491 None:intergenic 45.0%
GTTGAGCATTTGGCTGATGA+TGG - chr1.4:83317805-83317824 None:intergenic 45.0%
TCCCTATTCATCCCATCAAC+CGG - chr1.4:83317665-83317684 None:intergenic 45.0%
TGAGGCTGCAATTGCAACAT+AGG - chr1.4:83317863-83317882 None:intergenic 45.0%
TGGTCACCCCAATCTTGATA+CGG + chr1.4:83317439-83317458 MS.gene73471:CDS 45.0%
TGTATTCTCGCCTAGTGGAA+AGG + chr1.4:83317406-83317425 MS.gene73471:CDS 45.0%
! AGCATTGAGTTCACGAACGT+TGG - chr1.4:83317540-83317559 None:intergenic 45.0%
! AGGAAACGGAGGCTAAGTTT+TGG + chr1.4:83317630-83317649 MS.gene73471:CDS 45.0%
!! AAACGGAGGCTAAGTTTTGG+TGG + chr1.4:83317633-83317652 MS.gene73471:CDS 45.0%
!! AACGGAGGCTAAGTTTTGGT+GGG + chr1.4:83317634-83317653 MS.gene73471:CDS 45.0%
!! ACTTTCTCAAAGCGCCGTAA+CGG + chr1.4:83317326-83317345 MS.gene73471:CDS 45.0%
!! TCCGGTTGATGGGATGAATA+GGG + chr1.4:83317661-83317680 MS.gene73471:CDS 45.0%
!!! TAAGTTTTGGTGGGCTTGTC+CGG + chr1.4:83317643-83317662 MS.gene73471:CDS 45.0%
AGCAGCATCTGCACCACAAA+GGG - chr1.4:83317381-83317400 None:intergenic 50.0%
AGTGAGCTTTGCACCCTTTG+TGG + chr1.4:83317365-83317384 MS.gene73471:CDS 50.0%
CCATTTGCTCAAGGAAACGG+AGG + chr1.4:83317619-83317638 MS.gene73471:CDS 50.0%
CCTCCGTTTCCTTGAGCAAA+TGG - chr1.4:83317622-83317641 None:intergenic 50.0%
CCTTCTTGAAGAGCCCGTTA+CGG - chr1.4:83317343-83317362 None:intergenic 50.0%
GGATCAATGATGCCTCACCA+TGG + chr1.4:83317893-83317912 MS.gene73471:CDS 50.0%
GTGAGCCTCAATGAGTTGCA+TGG - chr1.4:83317510-83317529 None:intergenic 50.0%
GTTCACGAACGTTGGCATTG+CGG - chr1.4:83317532-83317551 None:intergenic 50.0%
TGAGCTGAGCCATTTGCTCA+AGG + chr1.4:83317610-83317629 MS.gene73471:CDS 50.0%
! TCTCAATCTTTTGGCGGCCT+CGG - chr1.4:83317271-83317290 None:intergenic 50.0%
!! CTTTCTCAAAGCGCCGTAAC+GGG + chr1.4:83317327-83317346 MS.gene73471:CDS 50.0%
!! GTCCGGTTGATGGGATGAAT+AGG + chr1.4:83317660-83317679 MS.gene73471:CDS 50.0%
!!! ATGGTGCCGTTGTTTTGTGG+TGG - chr1.4:83317491-83317510 None:intergenic 50.0%
!!! TGCATGGTGCCGTTGTTTTG+TGG - chr1.4:83317494-83317513 None:intergenic 50.0%
CGGCACCATGCAACTCATTG+AGG + chr1.4:83317502-83317521 MS.gene73471:CDS 55.0%
GAGCAGCATCTGCACCACAA+AGG - chr1.4:83317382-83317401 None:intergenic 55.0%
!! CCGTAACGGGCTCTTCAAGA+AGG + chr1.4:83317340-83317359 MS.gene73471:CDS 55.0%
TCGAGTGCAAGGAAAGGCCG+AGG + chr1.4:83317251-83317270 MS.gene73471:CDS 60.0%
! GGTGGGCTTGTCCGGTTGAT+GGG + chr1.4:83317651-83317670 MS.gene73471:CDS 60.0%
!! TGGTGGGCTTGTCCGGTTGA+TGG + chr1.4:83317650-83317669 MS.gene73471:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 83317248 83317934 83317248 ID=MS.gene73471
chr1.4 mRNA 83317248 83317934 83317248 ID=MS.gene73471.t1;Parent=MS.gene73471
chr1.4 exon 83317248 83317934 83317248 ID=MS.gene73471.t1.exon1;Parent=MS.gene73471.t1
chr1.4 CDS 83317248 83317934 83317248 ID=cds.MS.gene73471.t1;Parent=MS.gene73471.t1
Gene Sequence

>MS.gene73471

ATGTCGAGTGCAAGGAAAGGCCGAGGCCGCCAAAAGATTGAGATGAAAAAGATGAGCAACGAGAGCAACTTGCAAGTTACTTTCTCAAAGCGCCGTAACGGGCTCTTCAAGAAGGTCAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTAGTTGTATTCTCGCCTAGTGGAAAGGTATTTTCCTTTGGTCACCCCAATCTTGATACGGTCATAGACCGCTATCTTTCTCTGGTACCACCACAAAACAACGGCACCATGCAACTCATTGAGGCTCACCGCAATGCCAACGTTCGTGAACTCAATGCTCAGATGACTCAAATCAACAACACGCTGGATGCCGAGAAAAAGATTGGCGATGAGCTGAGCCATTTGCTCAAGGAAACGGAGGCTAAGTTTTGGTGGGCTTGTCCGGTTGATGGGATGAATAGGGATCAACTTGAATTATTCAAAAAGGCTTTGGAGGAGCTTAAGAAACTTGTAATTCAGCATGCTGCAACTCAAACTCATCCATTTTTTGTTGGCAACGCTTCTTCCTCGAACATTTATCTCCATCATCAGCCAAATGCTCAACAAGTTGAAATGTTGCCACCACAATTTTTTCAAAACCCTATGTTGCAATTGCAGCCTCATTTGTTTGATGGATCAATGATGCCTCACCATGGCTTCAATAATATGGTGTAA
Protein sequence

>MS.gene73471.t1

MSSARKGRGRQKIEMKKMSNESNLQVTFSKRRNGLFKKVSELCTLCGADAALVVFSPSGKVFSFGHPNLDTVIDRYLSLVPPQNNGTMQLIEAHRNANVRELNAQMTQINNTLDAEKKIGDELSHLLKETEAKFWWACPVDGMNRDQLELFKKALEELKKLVIQHAATQTHPFFVGNASSSNIYLHHQPNAQQVEMLPPQFFQNPMLQLQPHLFDGSMMPHHGFNNMV