AlfalfaGEDB | MS.gene73473

M. sativa cultivar XinJiangDaYe / MS.gene73473

KEGG: -
GO: GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0044212 GO:0045893 GO:0045935 GO:0045944 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73473.t1	XP_003592558.1	92.5	228	17	0	1	228	1	228	3.40E-117	431

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73473.t1	Q9FKK2	53.8	184	78	3	5	181	3	186	8.6e-45	181.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73473.t1	G7IAT8	92.5	228	17	0	1	228	1	228	2.4e-117	431.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene73473.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene73473	MS.gene22094	PPI
MS.gene73473	MS.gene068836	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73473.t1	MTR_1g108510	92.544	228	17	0	1	228	1	228	2.73e-161	445
MS.gene73473.t1	MTR_3g030770	92.105	228	18	0	1	228	1	228	3.44e-159	439
MS.gene73473.t1	MTR_2g093190	89.035	228	25	0	1	228	1	228	1.36e-153	426
MS.gene73473.t1	MTR_1g108580	85.965	228	32	0	1	228	1	228	9.73e-149	413
MS.gene73473.t1	MTR_1g105920	77.376	221	40	2	1	213	1	219	2.80e-120	342
MS.gene73473.t1	MTR_8g043650	74.043	235	43	3	1	227	1	225	5.56e-118	336
MS.gene73473.t1	MTR_1g105910	71.489	235	49	3	1	227	1	225	1.80e-115	329
MS.gene73473.t1	MTR_2g030740	74.208	221	47	2	1	213	1	219	1.20e-114	327
MS.gene73473.t1	MTR_1g012570	72.851	221	50	2	1	213	1	219	1.25e-112	322
MS.gene73473.t1	MTR_3g052920	71.946	221	52	2	1	213	1	219	3.53e-111	318

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73473.t1	AT5G60440	53.804	184	78	3	5	181	3	186	1.87e-58	187
MS.gene73473.t1	AT2G24840	48.193	166	75	4	9	168	63	223	8.86e-44	148
MS.gene73473.t1	AT1G01530	43.478	184	96	4	4	183	2	181	9.48e-40	137
MS.gene73473.t1	AT1G65360	42.308	182	98	4	5	181	3	182	1.07e-39	136
MS.gene73473.t1	AT4G36590	44.444	171	85	4	5	167	3	171	3.64e-39	135
MS.gene73473.t1	AT2G34440	36.486	148	92	2	9	156	2	147	6.84e-28	104
MS.gene73473.t1	AT3G04100	32.105	190	117	3	2	183	7	192	9.62e-26	100
MS.gene73473.t1	AT3G66656	38.583	127	74	1	9	131	2	128	8.36e-24	94.0
MS.gene73473.t1	AT1G72350	34.211	152	67	4	9	160	43	161	1.05e-21	89.7
MS.gene73473.t1	AT4G09960	37.778	135	76	4	9	137	2	134	4.26e-21	87.8

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Find 49 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGAAAATACCTTACCACT+AGG	0.624124	1.4:-83312966	None:intergenic
ACAAAGGGTGCAAAGCTCAC+TGG	0.525840	1.4:-83312913	None:intergenic
ACACCATATTGTTAAAGCCA+TGG	0.572464	1.4:-83313460	None:intergenic
ACTTTCTCAAAGCGCCGTAG+CGG	0.594013	1.4:+83312876	MS.gene73473:CDS
AGCAGCATCTGCACCACAAA+GGG	0.492573	1.4:-83312928	None:intergenic
AGCATTGAGTTCACGAACAT+TGG	0.517207	1.4:-83313087	None:intergenic
AGGAAACAGAGGCTAAGTTT+TGG	0.455034	1.4:+83313180	MS.gene73473:CDS
AGTGAGCTTTGCACCCTTTG+TGG	0.441727	1.4:+83312915	MS.gene73473:CDS
ATATTGTTAAAGCCATGGTG+AGG	0.709548	1.4:-83313455	None:intergenic
ATCAAGATTGGGGTGACCAA+AGG	0.581678	1.4:-83312985	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCAATCCATCAAACAAATG+AGG	-	chr1.4:83313431-83313450	None:intergenic	30.0%
AAGGAAAATACCTTACCACT+AGG	-	chr1.4:83312969-83312988	None:intergenic	35.0%
ACACCATATTGTTAAAGCCA+TGG	-	chr1.4:83313463-83313482	None:intergenic	35.0%
ATATTGTTAAAGCCATGGTG+AGG	-	chr1.4:83313458-83313477	None:intergenic	35.0%
TCTATGACCGTATCAAGATT+GGG	-	chr1.4:83312999-83313018	None:intergenic	35.0%
CTATGACCGTATCAAGATTG+GGG	-	chr1.4:83312998-83313017	None:intergenic	40.0%
GTCTATGACCGTATCAAGAT+TGG	-	chr1.4:83313000-83313019	None:intergenic	40.0%
TGTATTCTCACCTAGTGGTA+AGG	+	chr1.4:83312956-83312975	MS.gene73473:CDS	40.0%
ATCAAGATTGGGGTGACCAA+AGG	-	chr1.4:83312988-83313007	None:intergenic	45.0%
CATAGACCGCTATCTTTCTC+TGG	+	chr1.4:83313013-83313032	MS.gene73473:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	83312798	83313484	83312798	ID=MS.gene73473
chr1.4	mRNA	83312798	83313484	83312798	ID=MS.gene73473.t1;Parent=MS.gene73473
chr1.4	exon	83312798	83313484	83312798	ID=MS.gene73473.t1.exon1;Parent=MS.gene73473.t1
chr1.4	CDS	83312798	83313484	83312798	ID=cds.MS.gene73473.t1;Parent=MS.gene73473.t1

Gene Sequence

>MS.gene73473

ATGTCGAGCGGAAAGAAAGGCCGAGGTCGCCAAAAGATTGAGATGAAAAAGATGAGCAACGAGAGCAACTTGCAAGTTACTTTCTCAAAGCGCCGTAGCGGGATCTTCAAGAAAGCCAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTCGTTGTATTCTCACCTAGTGGTAAGGTATTTTCCTTTGGTCACCCCAATCTTGATACGGTCATAGACCGCTATCTTTCTCTGGTACCCCCACAAAACAATGGCACCATGCAACTCATTGAGGCTCACCACAATGCCAATGTTCGTGAACTCAATGCTCAGATGACTCAAATCAACAACACGCTGGATGCCGAGAAGAAGATTGGCGATGAGGTGAGCCATTTGCTCAAGGAAACAGAGGCTAAGTTTTGGTGGGCTTGTCCGGTTGATGGGATGAATAGGGATCAACTTGAATTATTCAAAAAGGCTTTGGAGGAGCTTAAGAAACTTGTAATTCAGCATGCTGCAACTCAAACTCATCCATTTTTTGTTGGCAACGCTTCTTCCTCGAACATTTATCTCCATCATCAGCCAAATCCTCAACAAGCTGAAATGTTTCCACCACGATTTTTTCAAAATTCTATGTTGCAATCGCAGCCTCATTTGTTTGATGGATTGATGATGCCTCACCATGGCTTTAACAATATGGTGTAA

Protein sequence

>MS.gene73473.t1

MSSGKKGRGRQKIEMKKMSNESNLQVTFSKRRSGIFKKASELCTLCGADAALVVFSPSGKVFSFGHPNLDTVIDRYLSLVPPQNNGTMQLIEAHHNANVRELNAQMTQINNTLDAEKKIGDEVSHLLKETEAKFWWACPVDGMNRDQLELFKKALEELKKLVIQHAATQTHPFFVGNASSSNIYLHHQPNPQQAEMFPPRFFQNSMLQSQPHLFDGLMMPHHGFNNMV