AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene73474

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73474.t1 MTR_1g108510 91.667 228 19 0 1 228 1 228 1.92e-160 443
MS.gene73474.t1 MTR_3g030770 90.789 228 21 0 1 228 1 228 3.19e-158 437
MS.gene73474.t1 MTR_1g108580 86.404 228 31 0 1 228 1 228 2.29e-149 415
MS.gene73474.t1 MTR_2g093190 85.088 228 34 0 1 228 1 228 6.64e-147 409
MS.gene73474.t1 MTR_1g105920 75.113 221 45 2 1 213 1 219 1.04e-115 330
MS.gene73474.t1 MTR_8g043650 71.861 231 55 2 1 223 1 229 1.53e-114 327
MS.gene73474.t1 MTR_2g030740 71.946 221 52 2 1 213 1 219 7.64e-111 318
MS.gene73474.t1 MTR_1g105910 68.085 235 57 3 1 227 1 225 1.13e-109 315
MS.gene73474.t1 MTR_3g052920 70.588 221 55 2 1 213 1 219 3.17e-108 311
MS.gene73474.t1 MTR_1g012570 69.683 221 57 2 1 213 1 219 7.16e-108 310
MS.gene73474.t1 MTR_0121s0080 65.106 235 64 3 1 227 1 225 1.02e-101 295
MS.gene73474.t1 MTR_5g045560 62.979 235 69 3 1 227 1 225 8.31e-100 290
MS.gene73474.t1 MTR_1g075600 62.128 235 71 3 1 227 1 225 4.81e-98 285
MS.gene73474.t1 MTR_1g077360 60.851 235 74 3 1 227 1 225 5.75e-97 283
MS.gene73474.t1 MTR_5g053390 61.702 235 72 3 1 227 1 225 1.87e-96 281
MS.gene73474.t1 MTR_3g052870 66.197 213 59 3 1 213 1 200 9.80e-94 274
MS.gene73474.t1 MTR_2g085280 59.574 235 77 3 1 227 1 225 1.90e-93 274
MS.gene73474.t1 MTR_2g085250 60.352 227 80 2 1 219 1 225 2.17e-93 273
MS.gene73474.t1 MTR_1g105905 63.303 218 62 3 18 227 1 208 1.61e-92 271
MS.gene73474.t1 MTR_1g106070 71.429 182 44 1 1 174 1 182 6.30e-90 263
MS.gene73474.t1 MTR_5g055100 58.298 235 80 3 1 227 1 225 1.44e-89 264
MS.gene73474.t1 MTR_7g062350 62.264 212 62 3 24 227 36 237 4.68e-84 250
MS.gene73474.t1 MTR_0121s0100 78.788 132 28 0 1 132 1 132 3.40e-71 213
MS.gene73474.t1 MTR_3g080940 53.714 175 79 1 9 183 9 181 2.29e-62 194
MS.gene73474.t1 MTR_3g030780 68.939 132 41 0 1 132 1 132 4.39e-61 187
MS.gene73474.t1 MTR_1g075570 57.303 178 54 2 18 187 1 164 1.72e-54 172
MS.gene73474.t1 MTR_3g067910 61.765 102 39 0 21 122 2 103 2.60e-40 134
MS.gene73474.t1 MTR_8g086290 41.818 165 86 2 5 166 8 165 1.40e-38 132
MS.gene73474.t1 MTR_2g105290 40.741 162 92 1 5 166 8 165 3.66e-37 128
MS.gene73474.t1 MTR_7g028448 40.523 153 79 2 22 174 25 165 5.12e-32 115
MS.gene73474.t1 MTR_4g036915 40.523 153 79 2 22 174 25 165 5.12e-32 115
MS.gene73474.t1 MTR_1g108500 61.856 97 16 1 22 118 110 185 9.10e-31 116
MS.gene73474.t1 MTR_4g127140 38.372 172 92 3 5 166 8 175 2.92e-26 100
MS.gene73474.t1 MTR_3g067875 76.786 56 13 0 18 73 1 56 5.22e-25 94.0
MS.gene73474.t1 MTR_3g067915 64.179 67 24 0 60 126 30 96 2.40e-24 93.2
MS.gene73474.t1 MTR_1g063160 56.164 73 32 0 9 81 2 74 7.59e-24 94.4
MS.gene73474.t1 MTR_1g047550 39.516 124 73 1 9 132 2 123 2.10e-23 93.2
MS.gene73474.t1 MTR_8g079502 57.971 69 29 0 9 77 2 70 2.32e-23 93.2
MS.gene73474.t1 MTR_4g131030 40.517 116 54 2 9 109 2 117 2.89e-23 93.6
MS.gene73474.t1 MTR_1g054265 53.333 75 35 0 9 83 2 76 5.50e-23 91.7
MS.gene73474.t1 MTR_8g051580 41.270 126 69 2 9 131 2 125 3.58e-22 89.7
MS.gene73474.t1 MTR_3g005530 55.882 68 30 0 9 76 2 69 2.05e-21 89.0
MS.gene73474.t1 MTR_8g033270 42.453 106 59 1 9 112 2 107 8.06e-21 87.8
MS.gene73474.t1 MTR_4g102530 56.716 67 29 0 10 76 3 69 1.64e-20 86.3
MS.gene73474.t1 MTR_8g046350 37.692 130 73 3 9 135 2 126 1.66e-20 85.1
MS.gene73474.t1 MTR_4g094632 38.679 106 63 1 9 114 2 105 1.93e-20 84.7
MS.gene73474.t1 MTR_3g067870 63.492 63 23 0 16 78 83 145 2.45e-20 84.3
MS.gene73474.t1 MTR_3g102570 47.059 102 51 3 9 109 2 101 2.74e-20 87.8
MS.gene73474.t1 MTR_3g452380 52.703 74 35 0 3 76 11 84 3.16e-20 86.3
MS.gene73474.t1 MTR_1g053070 50.617 81 40 0 9 89 2 82 3.63e-20 86.3
MS.gene73474.t1 MTR_4g094638 40.566 106 62 1 9 113 2 107 4.86e-20 84.3
MS.gene73474.t1 MTR_5g066180 52.941 68 32 0 9 76 2 69 1.54e-19 84.0
MS.gene73474.t1 MTR_4g093970 59.091 66 27 0 10 75 29 94 2.78e-19 83.6
MS.gene73474.t1 MTR_2g009890 51.471 68 33 0 9 76 2 69 4.32e-19 84.0
MS.gene73474.t1 MTR_8g087860 32.544 169 105 5 9 171 18 183 4.72e-19 83.2
MS.gene73474.t1 MTR_7g075870 53.731 67 31 0 10 76 3 69 5.39e-19 82.4
MS.gene73474.t1 MTR_8g033220 53.623 69 32 0 10 78 3 71 5.68e-19 82.4
MS.gene73474.t1 MTR_8g033220 53.623 69 32 0 10 78 3 71 6.87e-19 82.4
MS.gene73474.t1 MTR_2g017865 52.941 68 32 0 9 76 17 84 1.19e-18 82.4
MS.gene73474.t1 MTR_5g032150 31.169 154 77 4 9 156 2 132 2.27e-18 80.9
MS.gene73474.t1 MTR_5g032520 50.746 67 33 0 10 76 3 69 2.44e-18 80.9
MS.gene73474.t1 MTR_8g022970 33.544 158 92 3 8 159 17 167 3.27e-18 79.7
MS.gene73474.t1 MTR_1g101970 51.471 68 33 0 9 76 2 69 3.60e-18 79.3
MS.gene73474.t1 MTR_7g016600 53.521 71 30 2 7 76 2 70 4.33e-18 80.5
MS.gene73474.t1 MTR_6g015975 52.174 69 32 1 9 76 2 70 4.45e-18 80.5
MS.gene73474.t1 MTR_4g084740 47.059 85 44 1 9 92 2 86 6.55e-18 81.3
MS.gene73474.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 7.61e-18 79.7
MS.gene73474.t1 MTR_0003s0590 51.471 68 33 0 9 76 2 69 8.81e-18 79.7
MS.gene73474.t1 MTR_7g075870 52.941 68 31 1 10 76 3 70 1.05e-17 79.0
MS.gene73474.t1 MTR_5g031000 50.000 68 34 0 9 76 2 69 1.28e-17 79.0
MS.gene73474.t1 MTR_5g031000 50.000 68 34 0 9 76 2 69 1.41e-17 79.0
MS.gene73474.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 1.73e-17 79.0
MS.gene73474.t1 MTR_5g046870 50.725 69 33 1 9 76 2 70 1.85e-17 75.5
MS.gene73474.t1 MTR_3g088615 50.000 70 33 1 9 76 2 71 1.92e-17 77.4
MS.gene73474.t1 MTR_5g021270 52.857 70 31 1 9 76 2 71 1.92e-16 75.9
MS.gene73474.t1 MTR_5g021270 52.857 70 31 1 9 76 2 71 1.93e-16 75.9
MS.gene73474.t1 MTR_8g097090 37.037 108 64 2 9 112 2 109 2.06e-16 75.9
MS.gene73474.t1 MTR_8g066260 47.826 69 35 1 9 76 2 70 2.06e-16 75.9
MS.gene73474.t1 MTR_7g075850 47.500 80 39 2 9 85 2 81 3.14e-16 75.5
MS.gene73474.t1 MTR_3g084980 37.963 108 63 2 9 112 2 109 3.39e-16 75.5
MS.gene73474.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 4.94e-16 70.5
MS.gene73474.t1 MTR_1g038300 50.000 70 33 1 9 76 2 71 5.05e-16 74.7
MS.gene73474.t1 MTR_3g113030 35.833 120 65 2 9 117 2 120 6.09e-16 74.3
MS.gene73474.t1 MTR_5g046790 44.928 69 37 1 9 76 2 70 6.74e-16 73.9
MS.gene73474.t1 MTR_4g109810 55.357 56 25 0 9 64 2 57 6.77e-16 74.3
MS.gene73474.t1 MTR_7g016630 44.928 69 37 1 9 76 2 70 7.82e-16 74.7
MS.gene73474.t1 MTR_1g029670 45.714 70 36 1 9 76 2 71 2.07e-15 72.0
MS.gene73474.t1 MTR_5g066960 50.877 57 28 0 9 65 2 58 2.54e-15 68.6
MS.gene73474.t1 MTR_4g036050 30.851 188 101 6 9 186 2 170 3.76e-15 71.6
MS.gene73474.t1 MTR_3g109930 29.814 161 103 2 27 183 20 174 1.40e-14 69.7
MS.gene73474.t1 MTR_3g437790 32.867 143 79 4 26 159 30 164 2.94e-14 68.9
MS.gene73474.t1 MTR_1g041615 37.864 103 55 2 20 121 17 111 4.58e-14 67.4
MS.gene73474.t1 MTR_4g036050 28.729 181 100 6 9 186 2 156 4.78e-14 68.6
MS.gene73474.t1 MTR_4g093030 33.121 157 70 6 9 135 2 153 5.11e-14 67.8
MS.gene73474.t1 MTR_4g036050 30.464 151 84 4 9 156 2 134 8.98e-14 67.4
MS.gene73474.t1 MTR_4g036050 30.464 151 84 4 9 156 2 134 1.05e-13 67.4
MS.gene73474.t1 MTR_4g108720 28.571 168 106 6 9 164 2 167 1.39e-13 69.3
MS.gene73474.t1 MTR_4g051538 31.325 166 101 3 1 166 1 153 1.27e-12 65.5
MS.gene73474.t1 MTR_5g041650 40.541 74 42 1 9 80 39 112 4.08e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73474.t1 AT5G60440 52.973 185 80 4 4 181 2 186 2.18e-58 187
MS.gene73474.t1 AT2G24840 50.000 162 68 4 9 163 63 218 1.10e-43 148
MS.gene73474.t1 AT1G01530 42.391 184 98 4 4 183 2 181 4.01e-40 138
MS.gene73474.t1 AT4G36590 44.767 172 85 4 4 167 2 171 1.74e-39 136
MS.gene73474.t1 AT1G65360 40.984 183 101 4 4 181 2 182 4.65e-38 132
MS.gene73474.t1 AT2G34440 37.162 148 91 2 9 156 2 147 1.34e-27 103
MS.gene73474.t1 AT3G04100 32.105 190 117 3 2 183 7 192 8.86e-27 102
MS.gene73474.t1 AT3G66656 38.583 127 74 1 9 131 2 128 1.74e-23 93.2
MS.gene73474.t1 AT1G72350 32.370 173 77 4 9 174 43 182 1.94e-22 91.7
MS.gene73474.t1 AT4G09960 39.855 138 69 5 9 137 2 134 2.69e-22 91.3
MS.gene73474.t1 AT4G09960 39.855 138 69 5 9 137 3 135 3.00e-22 91.3
MS.gene73474.t1 AT4G09960 39.855 138 69 5 9 137 2 134 3.33e-22 91.3
MS.gene73474.t1 AT4G09960 39.855 138 69 5 9 137 12 144 3.93e-22 91.3
MS.gene73474.t1 AT1G28460 33.125 160 101 3 5 161 4 160 5.50e-22 89.4
MS.gene73474.t1 AT4G09960 39.855 138 69 5 9 137 28 160 8.25e-22 90.9
MS.gene73474.t1 AT2G45660 55.882 68 30 0 10 77 3 70 1.04e-21 88.2
MS.gene73474.t1 AT4G09960 40.288 139 67 6 5 134 95 226 3.94e-21 90.1
MS.gene73474.t1 AT2G45650 55.882 68 30 0 9 76 2 69 5.23e-21 88.6
MS.gene73474.t1 AT2G45660 55.882 68 30 0 10 77 3 70 5.42e-21 87.8
MS.gene73474.t1 AT4G24540 35.811 148 78 4 9 156 2 132 3.14e-20 85.9
MS.gene73474.t1 AT3G57230 50.000 68 34 0 9 76 2 69 3.45e-20 83.6
MS.gene73474.t1 AT4G18960 41.379 116 60 3 2 112 11 123 3.61e-20 86.3
MS.gene73474.t1 AT1G29962 29.240 171 115 2 5 169 4 174 4.93e-20 84.3
MS.gene73474.t1 AT5G10140 56.522 69 29 1 9 76 2 70 5.88e-20 83.6
MS.gene73474.t1 AT5G10140 56.522 69 29 1 9 76 2 70 1.05e-19 83.6
MS.gene73474.t1 AT5G10140 56.522 69 29 1 9 76 2 70 1.12e-19 83.6
MS.gene73474.t1 AT5G10140 56.522 69 29 1 9 76 2 70 1.30e-19 83.6
MS.gene73474.t1 AT5G62165 53.731 67 31 0 10 76 3 69 1.34e-19 82.4
MS.gene73474.t1 AT5G62165 53.731 67 31 0 10 76 3 69 1.34e-19 82.4
MS.gene73474.t1 AT5G62165 53.731 67 31 0 10 76 3 69 1.34e-19 82.4
MS.gene73474.t1 AT4G22950 55.224 67 30 0 10 76 3 69 1.44e-19 82.8
MS.gene73474.t1 AT5G62165 45.455 88 44 1 10 93 3 90 1.63e-19 80.9
MS.gene73474.t1 AT5G62165 53.731 67 31 0 10 76 3 69 1.73e-19 82.0
MS.gene73474.t1 AT5G62165 53.731 67 31 0 10 76 3 69 1.73e-19 82.0
MS.gene73474.t1 AT5G62165 53.731 67 31 0 10 76 3 69 1.73e-19 82.0
MS.gene73474.t1 AT5G62165 53.731 67 31 0 10 76 3 69 1.73e-19 82.0
MS.gene73474.t1 AT5G62165 53.731 67 31 0 10 76 3 69 1.73e-19 82.0
MS.gene73474.t1 AT3G57230 50.000 68 34 0 9 76 2 69 1.90e-19 84.0
MS.gene73474.t1 AT3G57230 50.000 68 34 0 9 76 2 69 1.90e-19 84.0
MS.gene73474.t1 AT2G22540 35.135 148 79 4 9 156 2 132 1.98e-19 84.0
MS.gene73474.t1 AT2G22540 35.135 148 79 4 9 156 2 132 1.98e-19 84.0
MS.gene73474.t1 AT3G57390 52.941 68 32 0 9 76 2 69 2.55e-19 83.6
MS.gene73474.t1 AT2G42830 52.000 75 34 1 2 76 12 84 2.57e-19 84.0
MS.gene73474.t1 AT2G42830 52.000 75 34 1 2 76 12 84 2.74e-19 84.0
MS.gene73474.t1 AT5G51870 55.224 67 30 0 10 76 3 69 4.51e-19 81.6
MS.gene73474.t1 AT3G58780 52.000 75 34 1 2 76 12 84 5.07e-19 83.2
MS.gene73474.t1 AT3G58780 52.000 75 34 1 2 76 18 90 5.77e-19 83.2
MS.gene73474.t1 AT3G57390 52.941 68 32 0 9 76 2 69 5.83e-19 83.2
MS.gene73474.t1 AT5G51870 55.224 67 30 0 10 76 3 69 6.51e-19 82.0
MS.gene73474.t1 AT1G22130 38.983 118 70 2 9 125 2 118 6.71e-19 84.0
MS.gene73474.t1 AT5G62165 53.731 67 31 0 10 76 3 69 6.90e-19 81.6
MS.gene73474.t1 AT5G62165 53.731 67 31 0 10 76 3 69 6.90e-19 81.6
MS.gene73474.t1 AT4G22950 55.224 67 30 0 10 76 3 69 7.02e-19 82.0
MS.gene73474.t1 AT4G22950 55.224 67 30 0 10 76 3 69 7.02e-19 82.0
MS.gene73474.t1 AT5G62165 53.731 67 31 0 10 76 3 69 7.74e-19 82.0
MS.gene73474.t1 AT5G62165 53.731 67 31 0 10 76 3 69 7.74e-19 82.0
MS.gene73474.t1 AT5G62165 53.731 67 31 0 10 76 3 69 7.74e-19 82.0
MS.gene73474.t1 AT3G58780 52.000 75 34 1 2 76 12 84 8.35e-19 83.2
MS.gene73474.t1 AT4G37940 50.000 68 34 0 9 76 2 69 1.05e-18 82.0
MS.gene73474.t1 AT5G51870 55.224 67 30 0 10 76 26 92 1.15e-18 80.9
MS.gene73474.t1 AT4G37940 50.000 68 34 0 9 76 2 69 1.25e-18 81.3
MS.gene73474.t1 AT5G51870 55.224 67 30 0 10 76 3 69 1.25e-18 81.6
MS.gene73474.t1 AT5G51870 55.224 67 30 0 10 76 13 79 1.57e-18 81.3
MS.gene73474.t1 AT4G37940 50.000 68 34 0 9 76 2 69 1.78e-18 80.1
MS.gene73474.t1 AT1G77980 49.383 81 40 1 9 88 2 82 3.42e-18 82.0
MS.gene73474.t1 AT5G65050 52.174 69 32 1 9 76 2 70 4.04e-18 79.3
MS.gene73474.t1 AT5G13790 52.941 68 32 0 9 76 2 69 4.58e-18 80.9
MS.gene73474.t1 AT5G13790 52.941 68 32 0 9 76 2 69 4.67e-18 80.9
MS.gene73474.t1 AT4G11880 52.941 68 31 1 10 76 3 70 7.71e-18 78.6
MS.gene73474.t1 AT4G11880 52.941 68 31 1 10 76 3 70 7.71e-18 78.6
MS.gene73474.t1 AT5G15800 52.174 69 32 1 9 76 2 70 1.11e-17 79.7
MS.gene73474.t1 AT5G65050 52.174 69 32 1 9 76 2 70 1.26e-17 78.2
MS.gene73474.t1 AT5G20240 49.315 73 35 1 9 79 2 74 1.30e-17 77.0
MS.gene73474.t1 AT5G65050 52.174 69 32 1 9 76 2 70 1.39e-17 78.2
MS.gene73474.t1 AT5G65050 52.174 69 32 1 9 76 2 70 1.49e-17 77.8
MS.gene73474.t1 AT5G20240 49.315 73 35 1 9 79 2 74 1.55e-17 78.2
MS.gene73474.t1 AT5G65060 31.500 200 99 7 9 185 2 186 1.61e-17 77.8
MS.gene73474.t1 AT4G11880 52.941 68 31 1 10 76 3 70 1.63e-17 78.6
MS.gene73474.t1 AT4G11880 52.941 68 31 1 10 76 3 70 1.63e-17 78.6
MS.gene73474.t1 AT5G15800 52.174 69 32 1 9 76 2 70 2.27e-17 79.0
MS.gene73474.t1 AT3G54340 34.586 133 73 5 9 128 2 133 2.44e-17 78.2
MS.gene73474.t1 AT1G77950 45.679 81 43 1 9 88 2 82 2.99e-17 78.6
MS.gene73474.t1 AT1G77950 45.679 81 43 1 9 88 2 82 2.99e-17 78.6
MS.gene73474.t1 AT1G77950 45.679 81 43 1 9 88 2 82 2.99e-17 78.6
MS.gene73474.t1 AT1G77950 45.679 81 43 1 9 88 2 82 2.99e-17 78.6
MS.gene73474.t1 AT3G30260 47.826 69 35 1 9 76 2 70 3.10e-17 78.2
MS.gene73474.t1 AT1G26310 50.704 71 32 2 7 76 2 70 3.12e-17 78.6
MS.gene73474.t1 AT5G51860 52.239 67 32 0 10 76 3 69 3.65e-17 77.0
MS.gene73474.t1 AT5G51860 52.239 67 32 0 10 76 3 69 4.54e-17 77.0
MS.gene73474.t1 AT1G28450 30.303 165 107 4 5 162 4 167 6.11e-17 76.3
MS.gene73474.t1 AT2G03710 51.429 70 32 2 9 76 2 71 6.49e-17 76.3
MS.gene73474.t1 AT3G02310 50.725 69 33 1 9 76 2 70 6.95e-17 76.3
MS.gene73474.t1 AT2G22540 34.641 153 66 6 10 156 3 127 7.14e-17 77.0
MS.gene73474.t1 AT1G69120 50.704 71 32 2 7 76 2 70 7.54e-17 77.0
MS.gene73474.t1 AT3G61120 48.529 68 35 0 9 76 2 69 8.91e-17 77.0
MS.gene73474.t1 AT5G65060 33.149 181 91 6 9 176 2 165 1.07e-16 75.9
MS.gene73474.t1 AT5G65060 50.725 69 33 1 9 76 2 70 1.10e-16 75.5
MS.gene73474.t1 AT1G24260 41.748 103 55 2 9 110 2 100 1.13e-16 76.6
MS.gene73474.t1 AT3G58780 55.385 65 27 1 2 66 12 74 1.19e-16 76.6
MS.gene73474.t1 AT1G24260 41.748 103 55 2 9 110 2 100 1.25e-16 76.6
MS.gene73474.t1 AT3G58780 55.385 65 27 1 2 66 12 74 1.56e-16 76.6
MS.gene73474.t1 AT2G14210 46.377 69 36 1 9 76 2 70 1.57e-16 76.3
MS.gene73474.t1 AT5G60910 47.826 69 35 1 9 76 2 70 1.73e-16 76.3
MS.gene73474.t1 AT5G65070 44.928 69 37 1 9 76 2 70 1.75e-16 73.9
MS.gene73474.t1 AT2G14210 46.377 69 36 1 9 76 2 70 2.19e-16 75.9
MS.gene73474.t1 AT1G69120 49.275 69 34 1 9 76 2 70 2.20e-16 76.3
MS.gene73474.t1 AT3G02310 50.725 69 33 1 9 76 2 70 2.53e-16 75.9
MS.gene73474.t1 AT1G47760 38.235 102 49 2 9 110 2 89 2.89e-16 74.3
MS.gene73474.t1 AT5G23260 46.392 97 44 3 2 90 9 105 3.00e-16 75.9
MS.gene73474.t1 AT5G23260 46.392 97 44 3 2 90 9 105 3.18e-16 75.9
MS.gene73474.t1 AT1G24260 49.275 69 34 1 9 76 2 70 3.87e-16 75.5
MS.gene73474.t1 AT5G65070 44.928 69 37 1 9 76 2 70 3.89e-16 74.3
MS.gene73474.t1 AT2G03710 51.429 70 32 2 9 76 2 71 4.01e-16 75.5
MS.gene73474.t1 AT2G03710 51.429 70 32 2 9 76 2 71 4.11e-16 75.5
MS.gene73474.t1 AT5G23260 47.727 88 40 2 9 90 2 89 4.50e-16 75.1
MS.gene73474.t1 AT5G23260 47.727 88 40 2 9 90 2 89 4.87e-16 75.1
MS.gene73474.t1 AT5G65070 44.928 69 37 1 9 76 2 70 1.07e-15 73.9
MS.gene73474.t1 AT5G65070 44.928 69 37 1 9 76 2 70 1.15e-15 73.2
MS.gene73474.t1 AT2G22630 45.588 68 37 0 9 76 2 69 1.95e-15 73.2
MS.gene73474.t1 AT2G22630 45.588 68 37 0 9 76 2 69 1.95e-15 73.2
MS.gene73474.t1 AT1G17310 53.165 79 35 1 8 86 47 123 2.80e-15 72.4
MS.gene73474.t1 AT1G17310 53.165 79 35 1 8 86 58 134 3.23e-15 72.4
MS.gene73474.t1 AT1G71692 47.826 69 35 1 10 77 3 71 5.74e-15 71.6
MS.gene73474.t1 AT5G65070 50.877 57 28 0 9 65 2 58 7.96e-15 71.6
MS.gene73474.t1 AT1G18750 41.558 77 43 1 9 83 2 78 2.15e-14 71.6
MS.gene73474.t1 AT5G65080 44.928 69 37 1 9 76 9 77 2.17e-14 69.3
MS.gene73474.t1 AT1G18750 41.558 77 43 1 9 83 2 78 2.37e-14 71.6
MS.gene73474.t1 AT1G18750 41.558 77 43 1 9 83 2 78 2.42e-14 71.6
MS.gene73474.t1 AT4G37435 30.128 156 79 4 9 134 2 157 1.03e-13 67.4
MS.gene73474.t1 AT5G65080 51.852 54 26 0 9 62 9 62 1.13e-13 67.8
MS.gene73474.t1 AT1G77080 53.623 69 31 1 9 76 2 70 2.40e-13 66.2
MS.gene73474.t1 AT1G77080 53.623 69 31 1 9 76 2 70 2.82e-13 66.2
MS.gene73474.t1 AT1G77080 53.623 69 31 1 9 76 2 70 8.41e-13 65.1
MS.gene73474.t1 AT5G49490 39.326 89 47 2 4 85 40 128 1.87e-12 65.5
MS.gene73474.t1 AT1G77080 53.623 69 31 1 9 76 2 70 2.33e-12 64.3
MS.gene73474.t1 AT2G03060 28.824 170 96 8 9 159 2 165 4.06e-12 65.1
MS.gene73474.t1 AT2G03060 28.824 170 96 8 9 159 2 165 4.06e-12 65.1
MS.gene73474.t1 AT2G03060 28.824 170 96 8 9 159 2 165 4.06e-12 65.1
MS.gene73474.t1 AT2G03060 28.824 170 96 8 9 159 2 165 4.26e-12 65.1
MS.gene73474.t1 AT1G69540 40.789 76 44 1 9 83 2 77 7.68e-12 64.3
MS.gene73474.t1 AT1G69540 40.789 76 44 1 9 83 2 77 1.01e-11 63.9
MS.gene73474.t1 AT5G49420 39.241 79 44 1 4 78 2 80 1.27e-11 63.5
MS.gene73474.t1 AT1G46408 44.737 76 38 2 7 78 2 77 2.45e-11 62.0
MS.gene73474.t1 AT2G26320 39.726 73 42 1 9 79 18 90 4.81e-11 58.5

Find 47 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTTGAATTATTCAAAA+AGG 0.249457 1.4:+83312043 MS.gene73474:CDS
TTGCAGCCTCATTTCTTTGA+TGG 0.271354 1.4:+83312230 MS.gene73474:CDS
GTTGCATGGCGCCATCGTTT+TGG 0.281221 1.4:-83311851 None:intergenic
ATTTCAGATTGTTGAGCATT+TGG 0.323276 1.4:-83312170 None:intergenic
TCACCATGGCTTCAATAATA+TGG 0.324358 1.4:+83312265 MS.gene73474:CDS
TCCGGTTGATGGAATGAATA+TGG 0.345674 1.4:+83312019 MS.gene73474:CDS
TGGTGGGCTTGTCCGGTTGA+TGG 0.354466 1.4:+83312008 MS.gene73474:CDS
CCTCTGTTTCCTTGAGCAAA+TGG 0.356090 1.4:-83311977 None:intergenic
CTCATCGCCAATCTTCTTCT+CGG 0.378999 1.4:-83311949 None:intergenic
GTCTATGACCGTATCAAGAT+TGG 0.398383 1.4:-83311805 None:intergenic
AGCATTGAGTTCACGAACTT+TGG 0.407921 1.4:-83311895 None:intergenic
CTTTCTCAAAGCGTCGTAAC+GGG 0.409500 1.4:+83311685 MS.gene73474:CDS
TCCATATTCATTCCATCAAC+CGG 0.418130 1.4:-83312020 None:intergenic
TCTATGACCGTATCAAGATT+GGG 0.446553 1.4:-83311804 None:intergenic
AGTGAGCTTTGCACCCTTTG+TGG 0.448173 1.4:+83311723 MS.gene73474:CDS
AGGAAACAGAGGCTAAGTTT+TGG 0.455034 1.4:+83311988 MS.gene73474:CDS
CTGGATACCGAGAAGAAGAT+TGG 0.467338 1.4:+83311942 MS.gene73474:CDS
GCCTTTCCTTGCACTCGACA+TGG 0.477331 1.4:-83311604 None:intergenic
GTTGAGCATTTGGCTGATGA+TGG 0.477675 1.4:-83312160 None:intergenic
AGCAGCATCTGCACCACAAA+GGG 0.494828 1.4:-83311736 None:intergenic
ACTTTCTCAAAGCGTCGTAA+CGG 0.503300 1.4:+83311684 MS.gene73474:CDS
TGAGGCTGCAATTGCAACAT+AGG 0.508756 1.4:-83312218 None:intergenic
ACAAAGGGTGCAAAGCTCAC+TGG 0.546172 1.4:-83311721 None:intergenic
ACACCATATTATTGAAGCCA+TGG 0.549763 1.4:-83312268 None:intergenic
TGGTCACCCCAATCTTGATA+CGG 0.553864 1.4:+83311797 MS.gene73474:CDS
TTTGAGCCATGTCGAGTGCA+AGG 0.559355 1.4:+83311598 None:intergenic
ATTGATCCATCAAAGAAATG+AGG 0.566839 1.4:-83312236 None:intergenic
CGAGAAGAAGATTGGCGATG+AGG 0.580787 1.4:+83311950 MS.gene73474:CDS
ATCAAGATTGGGGTGACCAA+AGG 0.581678 1.4:-83311793 None:intergenic
TCGTAACGGGCTCTTCAAGA+AGG 0.590251 1.4:+83311698 MS.gene73474:CDS
CTAGTTGTATTCTCGCCTAG+TGG 0.592221 1.4:+83311759 MS.gene73474:CDS
TGAGGTGAGCCATTTGCTCA+AGG 0.593970 1.4:+83311968 MS.gene73474:CDS
TCGAGTGCAAGGAAAGGCCG+AGG 0.595815 1.4:+83311609 MS.gene73474:CDS
TGGCGCCATGCAACTCATTG+AGG 0.601305 1.4:+83311860 MS.gene73474:CDS
TGTATTCTCGCCTAGTGGAA+AGG 0.608216 1.4:+83311764 MS.gene73474:CDS
ATGATGGAGATAAATGTTCG+AGG 0.611297 1.4:-83312144 None:intergenic
GTTCACGAACTTTGGCATTG+CGG 0.613984 1.4:-83311887 None:intergenic
GTGAGCCTCAATGAGTTGCA+TGG 0.614146 1.4:-83311865 None:intergenic
GAGCAGCATCTGCACCACAA+AGG 0.621182 1.4:-83311737 None:intergenic
AAGGAAAATACCTTTCCACT+AGG 0.627897 1.4:-83311774 None:intergenic
GCCATGTCGAGTGCAAGGAA+AGG 0.640958 1.4:+83311603 None:intergenic
CTATGACCGTATCAAGATTG+GGG 0.641126 1.4:-83311803 None:intergenic
ATATTATTGAAGCCATGGTG+AGG 0.642989 1.4:-83312263 None:intergenic
CCATTTGCTCAAGGAAACAG+AGG 0.656067 1.4:+83311977 MS.gene73474:CDS
CTCGTCCCAACCCAAAACGA+TGG 0.668736 1.4:+83311840 MS.gene73474:CDS
TTGGGACGAGAGAAAGATAG+CGG 0.705690 1.4:-83311827 None:intergenic
GGATCAATGATGCCTCACCA+TGG 0.734402 1.4:+83312251 MS.gene73474:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAACTTGAATTATTCAAAA+AGG + chr1.4:83312043-83312062 MS.gene73474:CDS 20.0%
! TGAATTATTCAAAAAGGCTT+TGG + chr1.4:83312049-83312068 MS.gene73474:CDS 25.0%
!!! TCTTTTTCATCTCAATCTTT+TGG - chr1.4:83311638-83311657 None:intergenic 25.0%
ATTGATCCATCAAAGAAATG+AGG - chr1.4:83312239-83312258 None:intergenic 30.0%
ATTTCAGATTGTTGAGCATT+TGG - chr1.4:83312173-83312192 None:intergenic 30.0%
! ATTATTCAAAAAGGCTTTGG+AGG + chr1.4:83312052-83312071 MS.gene73474:CDS 30.0%
! TTTTCATCTCAATCTTTTGG+CGG - chr1.4:83311635-83311654 None:intergenic 30.0%
!! GGATTTTGAAAAAATTGTCG+TGG - chr1.4:83312200-83312219 None:intergenic 30.0%
!!! CAAACTCTTCCATTTTTTGT+TGG + chr1.4:83312110-83312129 MS.gene73474:CDS 30.0%
AAGGAAAATACCTTTCCACT+AGG - chr1.4:83311777-83311796 None:intergenic 35.0%
ACACCATATTATTGAAGCCA+TGG - chr1.4:83312271-83312290 None:intergenic 35.0%
ATATTATTGAAGCCATGGTG+AGG - chr1.4:83312266-83312285 None:intergenic 35.0%
TCACCATGGCTTCAATAATA+TGG + chr1.4:83312265-83312284 MS.gene73474:CDS 35.0%
TCCATATTCATTCCATCAAC+CGG - chr1.4:83312023-83312042 None:intergenic 35.0%
TCTATGACCGTATCAAGATT+GGG - chr1.4:83311807-83311826 None:intergenic 35.0%
! ATGATGGAGATAAATGTTCG+AGG - chr1.4:83312147-83312166 None:intergenic 35.0%
!! GAAGCATTGCCAACAAAAAA+TGG - chr1.4:83312122-83312141 None:intergenic 35.0%
!!! AGTGGAAAGGTATTTTCCTT+TGG + chr1.4:83311777-83311796 MS.gene73474:CDS 35.0%
CTATGACCGTATCAAGATTG+GGG - chr1.4:83311806-83311825 None:intergenic 40.0%
GACTCAAATCAAAAACACGC+TGG + chr1.4:83311923-83311942 MS.gene73474:CDS 40.0%
GTCTATGACCGTATCAAGAT+TGG - chr1.4:83311808-83311827 None:intergenic 40.0%
TTGCAGCCTCATTTCTTTGA+TGG + chr1.4:83312230-83312249 MS.gene73474:CDS 40.0%
! AGCATTGAGTTCACGAACTT+TGG - chr1.4:83311898-83311917 None:intergenic 40.0%
! AGGAAACAGAGGCTAAGTTT+TGG + chr1.4:83311988-83312007 MS.gene73474:CDS 40.0%
!! AAACAGAGGCTAAGTTTTGG+TGG + chr1.4:83311991-83312010 MS.gene73474:CDS 40.0%
!! AACAGAGGCTAAGTTTTGGT+GGG + chr1.4:83311992-83312011 MS.gene73474:CDS 40.0%
!! ACTTTCTCAAAGCGTCGTAA+CGG + chr1.4:83311684-83311703 MS.gene73474:CDS 40.0%
!! TCCGGTTGATGGAATGAATA+TGG + chr1.4:83312019-83312038 MS.gene73474:CDS 40.0%
ATCAAGATTGGGGTGACCAA+AGG - chr1.4:83311796-83311815 None:intergenic 45.0%
CCATTTGCTCAAGGAAACAG+AGG + chr1.4:83311977-83311996 MS.gene73474:CDS 45.0%
CCTCTGTTTCCTTGAGCAAA+TGG - chr1.4:83311980-83311999 None:intergenic 45.0%
CTAGTTGTATTCTCGCCTAG+TGG + chr1.4:83311759-83311778 MS.gene73474:CDS 45.0%
CTCATCGCCAATCTTCTTCT+CGG - chr1.4:83311952-83311971 None:intergenic 45.0%
CTGGATACCGAGAAGAAGAT+TGG + chr1.4:83311942-83311961 MS.gene73474:CDS 45.0%
GTTCACGAACTTTGGCATTG+CGG - chr1.4:83311890-83311909 None:intergenic 45.0%
GTTGAGCATTTGGCTGATGA+TGG - chr1.4:83312163-83312182 None:intergenic 45.0%
TGAGGCTGCAATTGCAACAT+AGG - chr1.4:83312221-83312240 None:intergenic 45.0%
TGGTCACCCCAATCTTGATA+CGG + chr1.4:83311797-83311816 MS.gene73474:CDS 45.0%
TGTATTCTCGCCTAGTGGAA+AGG + chr1.4:83311764-83311783 MS.gene73474:CDS 45.0%
TTGGGACGAGAGAAAGATAG+CGG - chr1.4:83311830-83311849 None:intergenic 45.0%
!! CTTTCTCAAAGCGTCGTAAC+GGG + chr1.4:83311685-83311704 MS.gene73474:CDS 45.0%
!!! TAAGTTTTGGTGGGCTTGTC+CGG + chr1.4:83312001-83312020 MS.gene73474:CDS 45.0%
AGCAGCATCTGCACCACAAA+GGG - chr1.4:83311739-83311758 None:intergenic 50.0%
AGTGAGCTTTGCACCCTTTG+TGG + chr1.4:83311723-83311742 MS.gene73474:CDS 50.0%
CGAGAAGAAGATTGGCGATG+AGG + chr1.4:83311950-83311969 MS.gene73474:CDS 50.0%
GGATCAATGATGCCTCACCA+TGG + chr1.4:83312251-83312270 MS.gene73474:CDS 50.0%
GTGAGCCTCAATGAGTTGCA+TGG - chr1.4:83311868-83311887 None:intergenic 50.0%
TGAGGTGAGCCATTTGCTCA+AGG + chr1.4:83311968-83311987 MS.gene73474:CDS 50.0%
! ACAAAGGGTGCAAAGCTCAC+TGG - chr1.4:83311724-83311743 None:intergenic 50.0%
! TCTCAATCTTTTGGCGGCCT+CGG - chr1.4:83311629-83311648 None:intergenic 50.0%
! TTGCATGGCGCCATCGTTTT+GGG - chr1.4:83311853-83311872 None:intergenic 50.0%
!! TCGTAACGGGCTCTTCAAGA+AGG + chr1.4:83311698-83311717 MS.gene73474:CDS 50.0%
CTCGTCCCAACCCAAAACGA+TGG + chr1.4:83311840-83311859 MS.gene73474:CDS 55.0%
GAGCAGCATCTGCACCACAA+AGG - chr1.4:83311740-83311759 None:intergenic 55.0%
TGGCGCCATGCAACTCATTG+AGG + chr1.4:83311860-83311879 MS.gene73474:CDS 55.0%
! GTTGCATGGCGCCATCGTTT+TGG - chr1.4:83311854-83311873 None:intergenic 55.0%
!! ATGGCGCCATCGTTTTGGGT+TGG - chr1.4:83311849-83311868 None:intergenic 55.0%
!!! TGGCGCCATCGTTTTGGGTT+GGG - chr1.4:83311848-83311867 None:intergenic 55.0%
TCGAGTGCAAGGAAAGGCCG+AGG + chr1.4:83311609-83311628 MS.gene73474:CDS 60.0%
!! TGGTGGGCTTGTCCGGTTGA+TGG + chr1.4:83312008-83312027 MS.gene73474:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 83311606 83312292 83311606 ID=MS.gene73474
chr1.4 mRNA 83311606 83312292 83311606 ID=MS.gene73474.t1;Parent=MS.gene73474
chr1.4 exon 83311606 83312292 83311606 ID=MS.gene73474.t1.exon1;Parent=MS.gene73474.t1
chr1.4 CDS 83311606 83312292 83311606 ID=cds.MS.gene73474.t1;Parent=MS.gene73474.t1
Gene Sequence

>MS.gene73474

ATGTCGAGTGCAAGGAAAGGCCGAGGCCGCCAAAAGATTGAGATGAAAAAGATTAGCAACGAGAGCAACTTGCAAGTTACTTTCTCAAAGCGTCGTAACGGGCTCTTCAAGAAGGCCAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTAGTTGTATTCTCGCCTAGTGGAAAGGTATTTTCCTTTGGTCACCCCAATCTTGATACGGTCATAGACCGCTATCTTTCTCTCGTCCCAACCCAAAACGATGGCGCCATGCAACTCATTGAGGCTCACCGCAATGCCAAAGTTCGTGAACTCAATGCTCAGATGACTCAAATCAAAAACACGCTGGATACCGAGAAGAAGATTGGCGATGAGGTGAGCCATTTGCTCAAGGAAACAGAGGCTAAGTTTTGGTGGGCTTGTCCGGTTGATGGAATGAATATGGATCAACTTGAATTATTCAAAAAGGCTTTGGAGGAGCTTAAGAAACTTCTAATTCAGCATGCTACAACTCAAACTCTTCCATTTTTTGTTGGCAATGCTTCTTCCTCGAACATTTATCTCCATCATCAGCCAAATGCTCAACAATCTGAAATGTTGCCACGACAATTTTTTCAAAATCCTATGTTGCAATTGCAGCCTCATTTCTTTGATGGATCAATGATGCCTCACCATGGCTTCAATAATATGGTGTAA
Protein sequence

>MS.gene73474.t1

MSSARKGRGRQKIEMKKISNESNLQVTFSKRRNGLFKKASELCTLCGADAALVVFSPSGKVFSFGHPNLDTVIDRYLSLVPTQNDGAMQLIEAHRNAKVRELNAQMTQIKNTLDTEKKIGDEVSHLLKETEAKFWWACPVDGMNMDQLELFKKALEELKKLLIQHATTQTLPFFVGNASSSNIYLHHQPNAQQSEMLPRQFFQNPMLQLQPHFFDGSMMPHHGFNNMV