AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene74279

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74279.t1 MTR_2g090605 97.115 416 7 2 1 412 1 415 0.0 834
MS.gene74279.t1 MTR_4g078660 64.433 194 37 4 31 222 29 192 4.28e-81 252
MS.gene74279.t1 MTR_6g090380 67.883 137 32 2 56 180 70 206 4.80e-66 215
MS.gene74279.t1 MTR_8g102100 38.333 360 168 11 63 411 59 375 2.48e-63 208
MS.gene74279.t1 MTR_7g092070 68.966 116 36 0 73 188 260 375 2.37e-57 200
MS.gene74279.t1 MTR_3g029590 45.455 231 96 6 73 292 260 471 6.81e-56 196
MS.gene74279.t1 MTR_3g103960 55.769 156 64 3 30 180 2 157 1.54e-54 182
MS.gene74279.t1 MTR_1g050438 64.348 115 41 0 73 187 224 338 8.89e-52 183
MS.gene74279.t1 MTR_0728s0020 64.348 115 41 0 73 187 240 354 1.94e-51 182
MS.gene74279.t1 MTR_5g071070 61.207 116 45 0 73 188 144 259 3.59e-51 182
MS.gene74279.t1 MTR_5g082830 65.217 115 38 1 73 187 213 325 1.17e-50 181
MS.gene74279.t1 MTR_5g071070 61.207 116 45 0 73 188 226 341 1.38e-50 181
MS.gene74279.t1 MTR_1g075890 61.207 116 45 0 73 188 225 340 3.19e-49 177
MS.gene74279.t1 MTR_3g435680 61.207 116 45 0 73 188 147 262 1.60e-48 170
MS.gene74279.t1 MTR_3g070880 56.034 116 51 0 73 188 159 274 7.78e-45 162
MS.gene74279.t1 MTR_3g435590 59.813 107 43 0 73 179 234 340 1.28e-43 158
MS.gene74279.t1 MTR_3g464270 50.877 114 55 1 76 188 8 121 1.11e-36 137
MS.gene74279.t1 MTR_3g464260 62.162 74 28 0 108 181 212 285 2.24e-29 120
MS.gene74279.t1 MTR_3g464290 55.814 86 37 1 73 157 96 181 3.10e-29 119
MS.gene74279.t1 MTR_3g464280 40.179 112 33 1 70 181 181 258 3.42e-21 95.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74279.t1 AT1G03790 46.154 364 136 12 66 411 71 392 1.87e-85 266
MS.gene74279.t1 AT5G44260 42.714 398 179 12 30 411 16 380 8.40e-78 246
MS.gene74279.t1 AT2G19810 67.347 147 38 1 56 192 47 193 9.08e-71 227
MS.gene74279.t1 AT4G29190 53.723 188 68 2 24 192 7 194 2.60e-68 220
MS.gene74279.t1 AT2G25900 74.561 114 29 0 71 184 84 197 3.14e-65 211
MS.gene74279.t1 AT2G25900 74.561 114 29 0 71 184 84 197 3.14e-65 211
MS.gene74279.t1 AT2G41900 45.133 226 94 4 73 291 257 459 3.53e-56 197
MS.gene74279.t1 AT5G58620 66.957 115 37 1 73 186 205 319 2.85e-54 190
MS.gene74279.t1 AT5G07500 68.182 110 35 0 70 179 45 154 1.73e-52 176
MS.gene74279.t1 AT5G12850 65.217 115 39 1 73 186 253 367 4.87e-52 185
MS.gene74279.t1 AT3G55980 38.824 255 102 5 28 271 156 367 4.40e-49 175
MS.gene74279.t1 AT2G40140 39.831 236 92 5 73 294 210 409 1.02e-48 174
MS.gene74279.t1 AT2G40140 39.831 236 92 5 73 294 210 409 1.02e-48 174
MS.gene74279.t1 AT3G55980 38.824 255 102 5 28 271 223 434 1.13e-48 175

Find 81 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGCGGGTGAGGAGCTTTCT+TGG 0.183749 2.2:+9443873 None:intergenic
AGACATGCTTATTGATCTTT+TGG 0.193333 2.2:-9443133 MS.gene74279:CDS
GAGGGATGTCGATGTCTCTA+AGG 0.318194 2.2:+9443895 None:intergenic
TTTGAAGATGATGATGTAAC+AGG 0.341921 2.2:+9443429 None:intergenic
GTTGGTGGTGGTGACGTTAA+TGG 0.352963 2.2:-9442808 MS.gene74279:CDS
AAACAGCGACAATATTAATA+AGG 0.368587 2.2:-9442833 MS.gene74279:CDS
CGGTGGTGTTGCGGCGGGTG+AGG 0.397490 2.2:+9443862 None:intergenic
TCATTCACCCATCCGAGATC+AGG 0.400183 2.2:+9442769 None:intergenic
GACAATATTAATAAGGTTGT+TGG 0.414119 2.2:-9442826 MS.gene74279:CDS
TTTGGGAGAGAGAGGTTGGT+AGG 0.420760 2.2:+9443923 None:intergenic
CTCGTAGCCGGAGCCATGAC+TGG 0.421786 2.2:-9443707 MS.gene74279:CDS
CGCCGCGGTGGCTGTAACCG+TGG 0.429136 2.2:-9443594 MS.gene74279:CDS
CAGCCACCGCGGCGATACTC+AGG 0.436266 2.2:+9443603 None:intergenic
TCTTGTCCTGCCCCTGATCT+CGG 0.442440 2.2:-9442781 MS.gene74279:CDS
GAAGATGTCGACGGCGGCGG+TGG 0.446476 2.2:+9443845 None:intergenic
AAGAATGAAACTTGTGTTGT+TGG 0.454570 2.2:+9443946 None:intergenic
TGTTGCTGATTCTGTTCCTC+AGG 0.458860 2.2:+9442997 None:intergenic
GGACTTTGAATTCATACATT+CGG 0.463131 2.2:+9443739 None:intergenic
CGGCGGCGGTGGTGTTGCGG+CGG 0.463780 2.2:+9443856 None:intergenic
GGCGGCGGTGGTGTTGCGGC+GGG 0.472525 2.2:+9443857 None:intergenic
GTCCTGCCCCTGATCTCGGA+TGG 0.476419 2.2:-9442777 MS.gene74279:CDS
GGAGAAGATGTCGACGGCGG+CGG 0.481474 2.2:+9443842 None:intergenic
CGGGTGAGGAGCTTTCTTGG+AGG 0.487835 2.2:+9443876 None:intergenic
AGTGCTTTAGCAGTAGAAAC+TGG 0.488127 2.2:+9443060 None:intergenic
CGGAAATGATCTGATGAGTA+AGG 0.490767 2.2:+9443759 None:intergenic
GGGTGAGGAGCTTTCTTGGA+GGG 0.496924 2.2:+9443877 None:intergenic
TCCTGCCCCTGATCTCGGAT+GGG 0.499250 2.2:-9442776 MS.gene74279:CDS
ATTAATAAGGTTGTTGGTGG+TGG 0.500154 2.2:-9442820 MS.gene74279:CDS
AGAACTGAAGCATGCAAAGA+TGG 0.503562 2.2:-9443513 MS.gene74279:CDS
TCCGCCGGTGCACTCGTAGC+CGG 0.504444 2.2:-9443719 MS.gene74279:CDS
ACACCGTTACGTGGCTTCAT+CGG 0.504782 2.2:+9443210 None:intergenic
GAACCATAGCGTGAGAGCGA+TGG 0.517489 2.2:+9443186 None:intergenic
CGACGGCGGCGGTGGTGTTG+CGG 0.519055 2.2:+9443853 None:intergenic
TTGTCAACATCATTGAAACT+TGG 0.521327 2.2:+9442892 None:intergenic
CGTGGCTTCATCGGAGACAT+AGG 0.522416 2.2:+9443219 None:intergenic
CACTGTGGCGCTAATGGTAA+TGG 0.526244 2.2:-9443321 MS.gene74279:CDS
CCACGGCGGTTTCATTACTC+AGG 0.527158 2.2:-9443636 MS.gene74279:CDS
CATTCACCCATCCGAGATCA+GGG 0.528306 2.2:+9442770 None:intergenic
GTTCCATCGCTCTCACGCTA+TGG 0.533114 2.2:-9443189 MS.gene74279:CDS
AATATTAATAAGGTTGTTGG+TGG 0.545047 2.2:-9442823 MS.gene74279:CDS
GCTTCAGTTCTGTATCTAGC+AGG 0.547143 2.2:+9443525 None:intergenic
GAAGGGATGAATTTCAATGA+CGG 0.555565 2.2:-9443102 MS.gene74279:CDS
AATGGTAATGGTAATGGTAA+TGG 0.555973 2.2:-9443309 MS.gene74279:CDS
AATGAAACCGCCGTGGATCA+CGG 0.566037 2.2:+9443643 None:intergenic
AAGCTCGCCGCCGTGATCCA+CGG 0.567851 2.2:-9443653 MS.gene74279:CDS
AGTCAGTCCAGTCATGGCTC+CGG 0.569804 2.2:+9443700 None:intergenic
TGATGATCAAAAGAAGAAGA+AGG 0.576971 2.2:+9442961 None:intergenic
GGAGACATAGGTGGTGATGC+CGG 0.581592 2.2:+9443231 None:intergenic
GATACTTGTGAATTTGCTCA+TGG 0.582670 2.2:-9443570 MS.gene74279:CDS
ATGGACAGTCAGTCCAGTCA+TGG 0.586583 2.2:+9443694 None:intergenic
TGAATCTCTTGATGTTCCTG+AGG 0.587490 2.2:-9443013 MS.gene74279:CDS
AGCCACCGCGGCGATACTCA+GGG 0.587575 2.2:+9443604 None:intergenic
ACCCATCCGAGATCAGGGGC+AGG 0.589319 2.2:+9442775 None:intergenic
GGCGCTAATGGTAATGGTAA+TGG 0.597170 2.2:-9443315 MS.gene74279:CDS
GACTGTCCATTCGCTCACCC+CGG 0.597229 2.2:-9443681 MS.gene74279:CDS
AGCACTTCAGATACAAAACA+TGG 0.598969 2.2:-9443043 MS.gene74279:CDS
TCTCCGATGAAGCCACGTAA+CGG 0.601715 2.2:-9443213 MS.gene74279:CDS
AGGGATGTCGATGTCTCTAA+GGG 0.602570 2.2:+9443896 None:intergenic
TCCGGCTACGAGTGCACCGG+CGG 0.607263 2.2:+9443718 None:intergenic
TCTGAGTCAGAGTCATTGTG+TGG 0.612139 2.2:+9443792 None:intergenic
AAGATGATGATGTAACAGGA+AGG 0.616658 2.2:+9443433 None:intergenic
AGTCAGAGTCATTGTGTGGG+AGG 0.622332 2.2:+9443796 None:intergenic
GGCTCCGGCTACGAGTGCAC+CGG 0.627207 2.2:+9443715 None:intergenic
TGCCCTGAGTATCGCCGCGG+TGG 0.630381 2.2:-9443606 MS.gene74279:CDS
CACGGCGGTTTCATTACTCA+GGG 0.632004 2.2:-9443635 MS.gene74279:CDS
CTGAGTCAGAGTCATTGTGT+GGG 0.635621 2.2:+9443793 None:intergenic
CAAATTCACAAGTATCGCCA+CGG 0.650826 2.2:+9443577 None:intergenic
AGCGATGGAACACCGTTACG+TGG 0.658393 2.2:+9443201 None:intergenic
GACATAGGTGGTGATGCCGG+AGG 0.666150 2.2:+9443234 None:intergenic
GTCGTCGGAGAAGATGTCGA+CGG 0.666964 2.2:+9443836 None:intergenic
GGAAGGATTCTTAATTGACG+AGG 0.669701 2.2:+9443450 None:intergenic
TGTATGAATTCAAAGTCCGC+CGG 0.674896 2.2:-9443734 MS.gene74279:CDS
GTCGGAGAAGATGTCGACGG+CGG 0.678761 2.2:+9443839 None:intergenic
ATTCACCCATCCGAGATCAG+GGG 0.681023 2.2:+9442771 None:intergenic
GGCTTCATCGGAGACATAGG+TGG 0.681714 2.2:+9443222 None:intergenic
CCTGAGTAATGAAACCGCCG+TGG 0.683137 2.2:+9443636 None:intergenic
CTCGCCGCCGTGATCCACGG+CGG 0.698305 2.2:-9443650 MS.gene74279:CDS
GCACTTCAGATACAAAACAT+GGG 0.708790 2.2:-9443042 MS.gene74279:CDS
CGCCACGGTTACAGCCACCG+CGG 0.740750 2.2:+9443592 None:intergenic
GAAACCGCCGTGGATCACGG+CGG 0.763141 2.2:+9443646 None:intergenic
GTTTGCCCTGAGTATCGCCG+CGG 0.768550 2.2:-9443609 MS.gene74279:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACAATATGAACATGTTTTT+GGG - chr2.2:9443872-9443891 MS.gene74279:CDS 20.0%
! AAACAGCGACAATATTAATA+AGG - chr2.2:9443895-9443914 MS.gene74279:CDS 25.0%
! AATATTAATAAGGTTGTTGG+TGG - chr2.2:9443905-9443924 MS.gene74279:CDS 25.0%
! GACAATATTAATAAGGTTGT+TGG - chr2.2:9443902-9443921 MS.gene74279:CDS 25.0%
!! CAACAATATGAACATGTTTT+TGG - chr2.2:9443871-9443890 MS.gene74279:CDS 25.0%
AAGAATGAAACTTGTGTTGT+TGG + chr2.2:9442785-9442804 None:intergenic 30.0%
GGACTTTGAATTCATACATT+CGG + chr2.2:9442992-9443011 None:intergenic 30.0%
TGATGATCAAAAGAAGAAGA+AGG + chr2.2:9443770-9443789 None:intergenic 30.0%
TTGTCAACATCATTGAAACT+TGG + chr2.2:9443839-9443858 None:intergenic 30.0%
! AGACATGCTTATTGATCTTT+TGG - chr2.2:9443595-9443614 MS.gene74279:CDS 30.0%
! GACATGCTTATTGATCTTTT+GGG - chr2.2:9443596-9443615 MS.gene74279:CDS 30.0%
! TTTGAAGATGATGATGTAAC+AGG + chr2.2:9443302-9443321 None:intergenic 30.0%
!! AATGGTAATGGTAATGGTAA+TGG - chr2.2:9443419-9443438 MS.gene74279:CDS 30.0%
!! ATACCAAAAAGTGTTGAAGT+TGG + chr2.2:9443458-9443477 None:intergenic 30.0%
!!! ATCTTTTGGGTTCTTTTGAA+GGG - chr2.2:9443609-9443628 MS.gene74279:CDS 30.0%
!!! ATGTCTCTAAGGGATTTTTT+GGG + chr2.2:9442825-9442844 None:intergenic 30.0%
!!! TGTTTGATTTTGAAGCAACA+TGG + chr2.2:9443370-9443389 None:intergenic 30.0%
AGCACTTCAGATACAAAACA+TGG - chr2.2:9443685-9443704 MS.gene74279:CDS 35.0%
GAAGGGATGAATTTCAATGA+CGG - chr2.2:9443626-9443645 MS.gene74279:CDS 35.0%
GCACTTCAGATACAAAACAT+GGG - chr2.2:9443686-9443705 MS.gene74279:CDS 35.0%
! AAGATGATGATGTAACAGGA+AGG + chr2.2:9443298-9443317 None:intergenic 35.0%
! ATTAATAAGGTTGTTGGTGG+TGG - chr2.2:9443908-9443927 MS.gene74279:CDS 35.0%
! GATACTTGTGAATTTGCTCA+TGG - chr2.2:9443158-9443177 MS.gene74279:CDS 35.0%
! TCTCCAACTTCAACACTTTT+TGG - chr2.2:9443452-9443471 MS.gene74279:CDS 35.0%
!!! GATCTTTTGGGTTCTTTTGA+AGG - chr2.2:9443608-9443627 MS.gene74279:CDS 35.0%
!!! GATGTCTCTAAGGGATTTTT+TGG + chr2.2:9442826-9442845 None:intergenic 35.0%
!!! TGTTGTTTGTTTTGTCACTG+TGG - chr2.2:9443392-9443411 MS.gene74279:CDS 35.0%
AGAACTGAAGCATGCAAAGA+TGG - chr2.2:9443215-9443234 MS.gene74279:CDS 40.0%
AGTGCTTTAGCAGTAGAAAC+TGG + chr2.2:9443671-9443690 None:intergenic 40.0%
CGGAAATGATCTGATGAGTA+AGG + chr2.2:9442972-9442991 None:intergenic 40.0%
GGAAGGATTCTTAATTGACG+AGG + chr2.2:9443281-9443300 None:intergenic 40.0%
TGAATCTCTTGATGTTCCTG+AGG - chr2.2:9443715-9443734 MS.gene74279:CDS 40.0%
TGTATGAATTCAAAGTCCGC+CGG - chr2.2:9442994-9443013 MS.gene74279:CDS 40.0%
! CAAATTCACAAGTATCGCCA+CGG + chr2.2:9443154-9443173 None:intergenic 40.0%
!! CTCATGGTGTTTTTGAATGC+TGG - chr2.2:9443174-9443193 MS.gene74279:CDS 40.0%
!!! ATTTTTTGGGAGAGAGAGGT+TGG + chr2.2:9442812-9442831 None:intergenic 40.0%
AGGGATGTCGATGTCTCTAA+GGG + chr2.2:9442835-9442854 None:intergenic 45.0%
CTGAGTCAGAGTCATTGTGT+GGG + chr2.2:9442938-9442957 None:intergenic 45.0%
GCTTCAGTTCTGTATCTAGC+AGG + chr2.2:9443206-9443225 None:intergenic 45.0%
TCTGAGTCAGAGTCATTGTG+TGG + chr2.2:9442939-9442958 None:intergenic 45.0%
! TGTGTGGGAGGAACTTTTGA+AGG + chr2.2:9442923-9442942 None:intergenic 45.0%
! TTTTGTCACTGTGGCGCTAA+TGG - chr2.2:9443401-9443420 MS.gene74279:CDS 45.0%
!! GGCGCTAATGGTAATGGTAA+TGG - chr2.2:9443413-9443432 MS.gene74279:CDS 45.0%
!! GTCTCATTTTTCTTCGCCTC+CGG - chr2.2:9443478-9443497 MS.gene74279:CDS 45.0%
!! TGGGAGGAACTTTTGAAGGA+TGG + chr2.2:9442919-9442938 None:intergenic 45.0%
!! TGTTGCTGATTCTGTTCCTC+AGG + chr2.2:9443734-9443753 None:intergenic 45.0%
!!! AGGGATTTTTTGGGAGAGAG+AGG + chr2.2:9442816-9442835 None:intergenic 45.0%
!!! CTTTTGAAGGATGGTGTCGT+CGG + chr2.2:9442910-9442929 None:intergenic 45.0%
AATGAAACCGCCGTGGATCA+CGG + chr2.2:9443088-9443107 None:intergenic 50.0%
ACACCGTTACGTGGCTTCAT+CGG + chr2.2:9443521-9443540 None:intergenic 50.0%
AGTCAGAGTCATTGTGTGGG+AGG + chr2.2:9442935-9442954 None:intergenic 50.0%
ATGGACAGTCAGTCCAGTCA+TGG + chr2.2:9443037-9443056 None:intergenic 50.0%
ATTCACCCATCCGAGATCAG+GGG + chr2.2:9443960-9443979 None:intergenic 50.0%
CACGGCGGTTTCATTACTCA+GGG - chr2.2:9443093-9443112 MS.gene74279:CDS 50.0%
CACTGTGGCGCTAATGGTAA+TGG - chr2.2:9443407-9443426 MS.gene74279:CDS 50.0%
CATTCACCCATCCGAGATCA+GGG + chr2.2:9443961-9443980 None:intergenic 50.0%
GAGGGATGTCGATGTCTCTA+AGG + chr2.2:9442836-9442855 None:intergenic 50.0%
TCATTCACCCATCCGAGATC+AGG + chr2.2:9443962-9443981 None:intergenic 50.0%
TCTCCGATGAAGCCACGTAA+CGG - chr2.2:9443515-9443534 MS.gene74279:CDS 50.0%
! TTTGGGAGAGAGAGGTTGGT+AGG + chr2.2:9442808-9442827 None:intergenic 50.0%
!! GTTGGTGGTGGTGACGTTAA+TGG - chr2.2:9443920-9443939 MS.gene74279:CDS 50.0%
AGCGATGGAACACCGTTACG+TGG + chr2.2:9443530-9443549 None:intergenic 55.0%
AGTCAGTCCAGTCATGGCTC+CGG + chr2.2:9443031-9443050 None:intergenic 55.0%
CCACGGCGGTTTCATTACTC+AGG - chr2.2:9443092-9443111 MS.gene74279:CDS 55.0%
CCTGAGTAATGAAACCGCCG+TGG + chr2.2:9443095-9443114 None:intergenic 55.0%
CGTGGCTTCATCGGAGACAT+AGG + chr2.2:9443512-9443531 None:intergenic 55.0%
GAACCATAGCGTGAGAGCGA+TGG + chr2.2:9443545-9443564 None:intergenic 55.0%
GGCTTCATCGGAGACATAGG+TGG + chr2.2:9443509-9443528 None:intergenic 55.0%
GGGTGAGGAGCTTTCTTGGA+GGG + chr2.2:9442854-9442873 None:intergenic 55.0%
GTCGTCGGAGAAGATGTCGA+CGG + chr2.2:9442895-9442914 None:intergenic 55.0%
GTTCCATCGCTCTCACGCTA+TGG - chr2.2:9443539-9443558 MS.gene74279:CDS 55.0%
TCTTGTCCTGCCCCTGATCT+CGG - chr2.2:9443947-9443966 MS.gene74279:CDS 55.0%
! GGAGACATAGGTGGTGATGC+CGG + chr2.2:9443500-9443519 None:intergenic 55.0%
! TTTTCACCGGGGTGAGCGAA+TGG + chr2.2:9443056-9443075 None:intergenic 55.0%
CGGGTGAGGAGCTTTCTTGG+AGG + chr2.2:9442855-9442874 None:intergenic 60.0%
GACTGTCCATTCGCTCACCC+CGG - chr2.2:9443047-9443066 MS.gene74279:CDS 60.0%
GTCGGAGAAGATGTCGACGG+CGG + chr2.2:9442892-9442911 None:intergenic 60.0%
TCCTGCCCCTGATCTCGGAT+GGG - chr2.2:9443952-9443971 MS.gene74279:CDS 60.0%
! GACATAGGTGGTGATGCCGG+AGG + chr2.2:9443497-9443516 None:intergenic 60.0%
! GTTTGCCCTGAGTATCGCCG+CGG - chr2.2:9443119-9443138 MS.gene74279:CDS 60.0%
!!! ACGGCGGCGAGCTTTTTCAC+CGG + chr2.2:9443069-9443088 None:intergenic 60.0%
AAGCTCGCCGCCGTGATCCA+CGG - chr2.2:9443075-9443094 MS.gene74279:CDS 65.0%
ACCCATCCGAGATCAGGGGC+AGG + chr2.2:9443956-9443975 None:intergenic 65.0%
AGCCACCGCGGCGATACTCA+GGG + chr2.2:9443127-9443146 None:intergenic 65.0%
CGGCGGGTGAGGAGCTTTCT+TGG + chr2.2:9442858-9442877 None:intergenic 65.0%
CTCGTAGCCGGAGCCATGAC+TGG - chr2.2:9443021-9443040 MS.gene74279:CDS 65.0%
GAAACCGCCGTGGATCACGG+CGG + chr2.2:9443085-9443104 None:intergenic 65.0%
GGAGAAGATGTCGACGGCGG+CGG + chr2.2:9442889-9442908 None:intergenic 65.0%
GTCCTGCCCCTGATCTCGGA+TGG - chr2.2:9443951-9443970 MS.gene74279:CDS 65.0%
!!! CGGCGGCGAGCTTTTTCACC+GGG + chr2.2:9443068-9443087 None:intergenic 65.0%
!!! GGCGGCGAGCTTTTTCACCG+GGG + chr2.2:9443067-9443086 None:intergenic 65.0%
CAGCCACCGCGGCGATACTC+AGG + chr2.2:9443128-9443147 None:intergenic 70.0%
CGCCACGGTTACAGCCACCG+CGG + chr2.2:9443139-9443158 None:intergenic 70.0%
GAAGATGTCGACGGCGGCGG+TGG + chr2.2:9442886-9442905 None:intergenic 70.0%
GGCTCCGGCTACGAGTGCAC+CGG + chr2.2:9443016-9443035 None:intergenic 70.0%
TCCGCCGGTGCACTCGTAGC+CGG - chr2.2:9443009-9443028 MS.gene74279:CDS 70.0%
TCCGGCTACGAGTGCACCGG+CGG + chr2.2:9443013-9443032 None:intergenic 70.0%
! TGCCCTGAGTATCGCCGCGG+TGG - chr2.2:9443122-9443141 MS.gene74279:CDS 70.0%
CGCCGCGGTGGCTGTAACCG+TGG - chr2.2:9443134-9443153 MS.gene74279:CDS 75.0%
CTCGCCGCCGTGATCCACGG+CGG - chr2.2:9443078-9443097 MS.gene74279:CDS 75.0%
! CGACGGCGGCGGTGGTGTTG+CGG + chr2.2:9442878-9442897 None:intergenic 75.0%
!! CGGTGGTGTTGCGGCGGGTG+AGG + chr2.2:9442869-9442888 None:intergenic 75.0%
!!! CGGCGGCGGTGGTGTTGCGG+CGG + chr2.2:9442875-9442894 None:intergenic 80.0%
!!! GGCGGCGGTGGTGTTGCGGC+GGG + chr2.2:9442874-9442893 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 9442756 9443994 9442756 ID=MS.gene74279
chr2.2 mRNA 9442756 9443994 9442756 ID=MS.gene74279.t1;Parent=MS.gene74279
chr2.2 exon 9442756 9443994 9442756 ID=MS.gene74279.t1.exon1;Parent=MS.gene74279.t1
chr2.2 CDS 9442756 9443994 9442756 ID=cds.MS.gene74279.t1;Parent=MS.gene74279.t1
Gene Sequence

>MS.gene74279

ATGACTACTATTTGTGCTGAACAACACCAACAACACAAGTTTCATTCTTCCTACCAACCTCTCTCTCCCAAAAAATCCCTTAGAGACATCGACATCCCTCCAAGAAAGCTCCTCACCCGCCGCAACACCACCGCCGCCGTCGACATCTTCTCCGACGACACCATCCTTCAAAAGTTCCTCCCACACAATGACTCTGACTCAGACTCTGATGATCCTTACTCATCAGATCATTTCCGAATGTATGAATTCAAAGTCCGCCGGTGCACTCGTAGCCGGAGCCATGACTGGACTGACTGTCCATTCGCTCACCCCGGTGAAAAAGCTCGCCGCCGTGATCCACGGCGGTTTCATTACTCAGGGACAGTTTGCCCTGAGTATCGCCGCGGTGGCTGTAACCGTGGCGATACTTGTGAATTTGCTCATGGTGTTTTTGAATGCTGGCTTCATCCTGCTAGATACAGAACTGAAGCATGCAAAGATGGTAAAAACTGTAAGAGAAAAGTTTGTTTCTTTGCACACACTCCTCGTCAATTAAGAATCCTTCCTGTTACATCATCATCTTCAAATGAACATTTTTCATGCAACAAGAAAAATAACAAGCTTTTGAATAACCATGTTGCTTCAAAATCAAACAATTGTTGTTTGTTTTGTCACTGTGGCGCTAATGGTAATGGTAATGGTAATGGTGCTAATAATTCTCCAACTTCAACACTTTTTGGTATGTCTCATTTTTCTTCGCCTCCGGCATCACCACCTATGTCTCCGATGAAGCCACGTAACGGTGTTCCATCGCTCTCACGCTATGGTTCTTCGATTAATAGTAACAATCTTCGTTATAGAGACATGCTTATTGATCTTTTGGGTTCTTTTGAAGGGATGAATTTCAATGACGGTTCATCTTCTTCTTCTTCACCAGTTTCTACTGCTAAAGCACTTCAGATACAAAACATGGGTTATCTTGAATCTCTTGATGTTCCTGAGGAACAGAATCAGCAACAGTTTATTGTTTCACCTTCTTCTTCTTTTGATCATCAACAACATTTCAATATTCTTTCACAATCTATTCATCAGAATTTGACACCAAGTTTCAATGATGTTGACAATAACATCATTAACAACAATATGAACATGTTTTTGGGAAACAGCGACAATATTAATAAGGTTGTTGGTGGTGGTGACGTTAATGGTCTGTCTTGTCCTGCCCCTGATCTCGGATGGGTGAATGAATTGCTGATGTAG
Protein sequence

>MS.gene74279.t1

MTTICAEQHQQHKFHSSYQPLSPKKSLRDIDIPPRKLLTRRNTTAAVDIFSDDTILQKFLPHNDSDSDSDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGGCNRGDTCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSSSSNEHFSCNKKNNKLLNNHVASKSNNCCLFCHCGANGNGNGNGANNSPTSTLFGMSHFSSPPASPPMSPMKPRNGVPSLSRYGSSINSNNLRYRDMLIDLLGSFEGMNFNDGSSSSSSPVSTAKALQIQNMGYLESLDVPEEQNQQQFIVSPSSSFDHQQHFNILSQSIHQNLTPSFNDVDNNIINNNMNMFLGNSDNINKVVGGGDVNGLSCPAPDLGWVNELLM