Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74428.t1 | XP_013451414.1 | 84 | 75 | 4 | 1 | 73 | 139 | 587 | 661 | 2.70E-24 | 121.7 |
| MS.gene74428.t1 | XP_013451414.1 | 73.9 | 46 | 12 | 0 | 2 | 47 | 3 | 48 | 2.90E-10 | 75.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74428.t1 | F4JEX5 | 57.8 | 83 | 27 | 1 | 65 | 139 | 597 | 679 | 1.4e-18 | 94.0 |
| MS.gene74428.t1 | F4JEX5 | 61.5 | 39 | 15 | 0 | 9 | 47 | 63 | 101 | 9.7e-07 | 54.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74428.t1 | A0A072U6S6 | 84.0 | 75 | 4 | 1 | 73 | 139 | 587 | 661 | 1.9e-24 | 121.7 |
| MS.gene74428.t1 | A0A072U6S6 | 73.9 | 46 | 12 | 0 | 2 | 47 | 3 | 48 | 2.1e-10 | 75.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050799 | MS.gene74428 | 0.808055 | 3.74E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene74428 | 0.823015 | 1.74E-53 | -1.69E-46 |
| MS.gene053145 | MS.gene74428 | 0.829634 | 4.61E-55 | -1.69E-46 |
| MS.gene053900 | MS.gene74428 | 0.823327 | 1.47E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74428.t1 | MTR_6g023875 | 84.000 | 75 | 4 | 1 | 73 | 139 | 587 | 661 | 4.35e-34 | 125 |
| MS.gene74428.t1 | MTR_6g023875 | 73.913 | 46 | 12 | 0 | 2 | 47 | 3 | 48 | 5.19e-17 | 76.6 |
| MS.gene74428.t1 | MTR_6g023855 | 72.000 | 75 | 13 | 1 | 73 | 139 | 452 | 526 | 5.11e-29 | 110 |
| MS.gene74428.t1 | MTR_6g023845 | 64.865 | 74 | 18 | 1 | 73 | 138 | 294 | 367 | 1.69e-24 | 96.7 |
| MS.gene74428.t1 | MTR_6g023865 | 66.197 | 71 | 16 | 1 | 73 | 135 | 377 | 447 | 1.98e-24 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74428.t1 | AT3G27120 | 57.831 | 83 | 27 | 1 | 65 | 139 | 597 | 679 | 1.25e-23 | 95.5 |
Find 24 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAATAATTACCGATTAA+TGG | 0.144621 | 6.4:-378405 | None:intergenic |
| GAGCAATGGAACAAGCAATT+TGG | 0.316476 | 6.4:+381618 | MS.gene74428:CDS |
| TTGCATACCTGAAGAGTTAC+TGG | 0.339861 | 6.4:-381448 | None:intergenic |
| CAGAAGGCCTCATTTCTTGC+AGG | 0.354491 | 6.4:-381569 | None:intergenic |
| TCATAGGTGCCAAGTTCATT+AGG | 0.372202 | 6.4:-381597 | None:intergenic |
| TTGCTTGTTCCATTGCTCAT+AGG | 0.382510 | 6.4:-381613 | None:intergenic |
| CTCTTACTCCAACCATTAAT+CGG | 0.420069 | 6.4:+378393 | MS.gene74428:CDS |
| GATTAGACCAGTAACTCTTC+AGG | 0.424322 | 6.4:+381441 | MS.gene74428:CDS |
| AAGCTTTCATTCAACACATT+CGG | 0.424670 | 6.4:+378333 | MS.gene74428:CDS |
| AATGAAAGCTTCATCGATAT+CGG | 0.432226 | 6.4:-378321 | None:intergenic |
| TCTCTCATCAATGGAAGAAT+CGG | 0.463154 | 6.4:+378188 | None:intergenic |
| TCTGTTTCACCTAATGAACT+TGG | 0.492988 | 6.4:+381588 | MS.gene74428:CDS |
| AATAATTACCGATTAATGGT+TGG | 0.503634 | 6.4:-378401 | None:intergenic |
| AGGTGCAAAAGTTGTGAACT+TGG | 0.504907 | 6.4:+381408 | MS.gene74428:CDS |
| AAAAGTTGTGAACTTGGAAA+AGG | 0.506994 | 6.4:+381414 | MS.gene74428:CDS |
| AGAATTCCCTGCAAGAAATG+AGG | 0.560759 | 6.4:+381562 | MS.gene74428:CDS |
| AGAAGGCCTCATTTCTTGCA+GGG | 0.574859 | 6.4:-381568 | None:intergenic |
| AACTTGGCACCTATGAGCAA+TGG | 0.576691 | 6.4:+381604 | MS.gene74428:CDS |
| GTGAAGGAGGCGATAAGACA+AGG | 0.623622 | 6.4:+381388 | MS.gene74428:CDS |
| AGTAATCATCGGCATCGCGG+TGG | 0.630053 | 6.4:-378287 | None:intergenic |
| CATCGCGGAAGAGTAATCAT+CGG | 0.674932 | 6.4:-378298 | None:intergenic |
| AGTTCATTAGGTGAAACAGA+AGG | 0.682923 | 6.4:-381585 | None:intergenic |
| CTTCATCGATATCGGCATCG+CGG | 0.714400 | 6.4:-378313 | None:intergenic |
| AAGAGTAATCATCGGCATCG+CGG | 0.732730 | 6.4:-378290 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATTAATAATCAATCA+TGG | - | chr6.4:381512-381531 | None:intergenic | 10.0% |
| !!! | TCATTTTTTTAAATTATTAG+CGG | - | chr6.4:378932-378951 | None:intergenic | 10.0% |
| !! | AGGAAAAAAAATGAATTAAT+TGG | + | chr6.4:378640-378659 | MS.gene74428:intron | 15.0% |
| !!! | AACATTTTTTTTTGGAAATA+GGG | + | chr6.4:380188-380207 | MS.gene74428:intron | 15.0% |
| !!! | CATTTTTTTAAATTATTAGC+GGG | - | chr6.4:378931-378950 | None:intergenic | 15.0% |
| !!! | TAACATCTTATTTATAATAG+TGG | + | chr6.4:380599-380618 | MS.gene74428:intron | 15.0% |
| !!! | TCATTTTTTTAAACTATTAG+CGG | + | chr6.4:378887-378906 | MS.gene74428:intron | 15.0% |
| !!! | TGAGATAATTAAACTTTTTT+TGG | + | chr6.4:379061-379080 | MS.gene74428:intron | 15.0% |
| !!! | TTATTTTTTATGAGTACATT+TGG | + | chr6.4:380220-380239 | MS.gene74428:intron | 15.0% |
| !! | ATAATAGATTCTGTAATTGT+TGG | + | chr6.4:380694-380713 | MS.gene74428:intron | 20.0% |
| !! | ATATTGATATTGACAAGATA+CGG | + | chr6.4:381028-381047 | MS.gene74428:intron | 20.0% |
| !! | ATCTATGGATATTGAAAATT+TGG | + | chr6.4:379525-379544 | MS.gene74428:intron | 20.0% |
| !! | ATGAAAAAAAAATGTTGGAT+TGG | - | chr6.4:380121-380140 | None:intergenic | 20.0% |
| !! | CTATTTCCAAAAAAAAATGT+TGG | - | chr6.4:380189-380208 | None:intergenic | 20.0% |
| !! | CTCATAAAAAATAACACTTT+AGG | - | chr6.4:380214-380233 | None:intergenic | 20.0% |
| !! | CTGAATAACCTAAAAAAAAA+AGG | - | chr6.4:381348-381367 | None:intergenic | 20.0% |
| !! | TGAAAAAAAAATGTTGGATT+GGG | - | chr6.4:380120-380139 | None:intergenic | 20.0% |
| !! | TGTGAATGAAAAAAAAATGT+TGG | - | chr6.4:380126-380145 | None:intergenic | 20.0% |
| !!! | AAGAAATAATTACCGATTAA+TGG | - | chr6.4:378408-378427 | None:intergenic | 20.0% |
| !!! | ACATTTTTTTTTCATTCACA+TGG | + | chr6.4:380126-380145 | MS.gene74428:intron | 20.0% |
| !!! | ATGATTTATTCATTTTGTGT+AGG | + | chr6.4:381533-381552 | MS.gene74428:intron | 20.0% |
| !!! | CAACATTTTTTTTTGGAAAT+AGG | + | chr6.4:380187-380206 | MS.gene74428:intron | 20.0% |
| !!! | CATTTTTTTAAACTATTAGC+GGG | + | chr6.4:378888-378907 | MS.gene74428:intron | 20.0% |
| !!! | CTTATCAAACTATTTTATCT+TGG | - | chr6.4:379712-379731 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTTTAGGTTATTC+AGG | + | chr6.4:381346-381365 | MS.gene74428:intron | 20.0% |
| !!! | TTCTTTTTCTAGTTTTTTCT+TGG | + | chr6.4:381289-381308 | MS.gene74428:intron | 20.0% |
| !!! | TTTTCCTTTCAAATTTTTAC+TGG | - | chr6.4:378627-378646 | None:intergenic | 20.0% |
| ! | AAAAGATGATATAAACGATG+TGG | - | chr6.4:379760-379779 | None:intergenic | 25.0% |
| ! | AAAGATGATATAAACGATGT+GGG | - | chr6.4:379759-379778 | None:intergenic | 25.0% |
| ! | AAATAAGATGTGATTCAAAC+CGG | - | chr6.4:380741-380760 | None:intergenic | 25.0% |
| ! | AACTTCTGTAATTCGATAAT+AGG | - | chr6.4:380412-380431 | None:intergenic | 25.0% |
| ! | AAGCAAATACTAGTTAGAAA+CGG | - | chr6.4:381117-381136 | None:intergenic | 25.0% |
| ! | ATTATCGAATTACAGAAGTT+TGG | + | chr6.4:380412-380431 | MS.gene74428:intron | 25.0% |
| ! | CATGAACAGTTAATTTCAAA+AGG | - | chr6.4:379249-379268 | None:intergenic | 25.0% |
| ! | CTTGATGAAATAACTTAAAG+TGG | + | chr6.4:380502-380521 | MS.gene74428:intron | 25.0% |
| ! | TAATATTTACTCTTTCATCC+CGG | + | chr6.4:380719-380738 | MS.gene74428:intron | 25.0% |
| ! | TACACCAGTAAAAATTTGAA+AGG | + | chr6.4:378620-378639 | MS.gene74428:intron | 25.0% |
| ! | TCAACATCTACAAACAATTA+CGG | - | chr6.4:380630-380649 | None:intergenic | 25.0% |
| ! | TCCAAAAAAAAATGTTGGAT+TGG | - | chr6.4:380184-380203 | None:intergenic | 25.0% |
| !! | AATAATTACCGATTAATGGT+TGG | - | chr6.4:378404-378423 | None:intergenic | 25.0% |
| !! | GAAATTAACTGTTCATGTTT+TGG | + | chr6.4:379252-379271 | MS.gene74428:intron | 25.0% |
| !! | TTGCAATCTTTTTCTTTAGA+TGG | - | chr6.4:381084-381103 | None:intergenic | 25.0% |
| !!! | ATAGTTTGATAAGTTTTGTG+TGG | + | chr6.4:379719-379738 | MS.gene74428:intron | 25.0% |
| !!! | CTTGGTTACCTTTTTTTTTT+AGG | + | chr6.4:381337-381356 | MS.gene74428:intron | 25.0% |
| !!! | TAATTTGTTGCTTGTTAGTT+CGG | + | chr6.4:379599-379618 | MS.gene74428:intron | 25.0% |
| !!! | TCCAATCCAACATTTTTTTT+TGG | + | chr6.4:380180-380199 | MS.gene74428:intron | 25.0% |
| !!! | TGATTTACTTCACTTTTACT+TGG | + | chr6.4:381319-381338 | MS.gene74428:intron | 25.0% |
| AAAAGTTGTGAACTTGGAAA+AGG | + | chr6.4:381414-381433 | MS.gene74428:CDS | 30.0% | |
| AACTTAAAGTGGCTAGAAAA+TGG | + | chr6.4:380513-380532 | MS.gene74428:intron | 30.0% | |
| AAGCTTTCATTCAACACATT+CGG | + | chr6.4:378333-378352 | MS.gene74428:CDS | 30.0% | |
| AATAAGATGTGATTCAAACC+GGG | - | chr6.4:380740-380759 | None:intergenic | 30.0% | |
| AATGAAAGCTTCATCGATAT+CGG | - | chr6.4:378324-378343 | None:intergenic | 30.0% | |
| ACAATCCATCATTCTCTAAA+AGG | - | chr6.4:381175-381194 | None:intergenic | 30.0% | |
| ACTTAAAGTGGCTAGAAAAT+GGG | + | chr6.4:380514-380533 | MS.gene74428:intron | 30.0% | |
| AGACATGAAAAACTTAGTGA+AGG | + | chr6.4:381372-381391 | MS.gene74428:CDS | 30.0% | |
| AGCAAATACTAGTTAGAAAC+GGG | - | chr6.4:381116-381135 | None:intergenic | 30.0% | |
| ATATGCATGAAGTTTCTCTT+TGG | - | chr6.4:380476-380495 | None:intergenic | 30.0% | |
| ATCAAAGACATGTTTAGTGT+CGG | - | chr6.4:379187-379206 | None:intergenic | 30.0% | |
| ATGTGAATGACTGTATGAAT+CGG | - | chr6.4:380058-380077 | None:intergenic | 30.0% | |
| ATGTTATTCCCGTTAATTAC+AGG | + | chr6.4:381249-381268 | MS.gene74428:intron | 30.0% | |
| ATTATATGCAACTTAACCGA+AGG | + | chr6.4:381221-381240 | MS.gene74428:intron | 30.0% | |
| CAAGCTATCAAATGAGTAAA+TGG | + | chr6.4:381196-381215 | MS.gene74428:intron | 30.0% | |
| CTGAATGTAATTGTATCTGT+TGG | + | chr6.4:378958-378977 | MS.gene74428:intron | 30.0% | |
| GGAATTACTATGCTTATCTA+TGG | + | chr6.4:379510-379529 | MS.gene74428:intron | 30.0% | |
| GTATTTGATATGAAGTGTGT+TGG | + | chr6.4:379021-379040 | MS.gene74428:intron | 30.0% | |
| GTTTCTAACTAGTATTTGCT+TGG | + | chr6.4:381116-381135 | MS.gene74428:intron | 30.0% | |
| TAAACATGTCTTTGATCTGA+TGG | + | chr6.4:379191-379210 | MS.gene74428:intron | 30.0% | |
| TATGCATGAAGTTTCTCTTT+GGG | - | chr6.4:380475-380494 | None:intergenic | 30.0% | |
| TTGGATATAATCATACGTGT+CGG | + | chr6.4:378659-378678 | MS.gene74428:intron | 30.0% | |
| TTTATGCTTGATCAAAAGCT+CGG | - | chr6.4:380975-380994 | None:intergenic | 30.0% | |
| ! | AAAAAATGTTGGATTGGGAT+TGG | - | chr6.4:380115-380134 | None:intergenic | 30.0% |
| ! | ATACGTTTTCATGAGATGAT+TGG | + | chr6.4:379222-379241 | MS.gene74428:intron | 30.0% |
| ! | GAAATTTAAAGTCTTGTCAG+TGG | + | chr6.4:379560-379579 | MS.gene74428:intron | 30.0% |
| ! | GAGAAACTTCATGCATATTT+TGG | + | chr6.4:380478-380497 | MS.gene74428:intron | 30.0% |
| ! | GGCGAGATAATTGAAAATTT+TGG | + | chr6.4:379360-379379 | MS.gene74428:intron | 30.0% |
| ! | TATATGTGTTGATGTTGTGT+TGG | + | chr6.4:379135-379154 | MS.gene74428:intron | 30.0% |
| ! | TGTCAGTGTTATATAGCTTT+TGG | + | chr6.4:379339-379358 | MS.gene74428:intron | 30.0% |
| !! | AATTTGTTGCTTGTTAGTTC+GGG | + | chr6.4:379600-379619 | MS.gene74428:intron | 30.0% |
| !! | AGTACATTTGGCTTTATCAT+AGG | + | chr6.4:380232-380251 | MS.gene74428:intron | 30.0% |
| !! | GTATTTGCTTGGTATTTTAG+AGG | + | chr6.4:381127-381146 | MS.gene74428:intron | 30.0% |
| !!! | GATTTTGAGACCTGTTTTTT+CGG | + | chr6.4:378462-378481 | MS.gene74428:intron | 30.0% |
| !!! | TGATAGGCAGATTTTTTTGT+TGG | + | chr6.4:380563-380582 | MS.gene74428:intron | 30.0% |
| AAACAGGTAAATCTTTGAGC+TGG | + | chr6.4:379909-379928 | MS.gene74428:intron | 35.0% | |
| AACAGGTAAATCTTTGAGCT+GGG | + | chr6.4:379910-379929 | MS.gene74428:intron | 35.0% | |
| AACTCTTCAGGTATGCAATA+GGG | + | chr6.4:381453-381472 | MS.gene74428:intron | 35.0% | |
| AATAACATGCAAACCTGTGA+AGG | + | chr6.4:379410-379429 | MS.gene74428:intron | 35.0% | |
| AATCTGCCTATCATCACATT+TGG | - | chr6.4:380556-380575 | None:intergenic | 35.0% | |
| AATGAGACTGACTGAATGAA+TGG | - | chr6.4:378872-378891 | None:intergenic | 35.0% | |
| AATTACAGAAGTTTGGCACA+AGG | + | chr6.4:380419-380438 | MS.gene74428:intron | 35.0% | |
| ACTTCACCAAATGTGATGAT+AGG | + | chr6.4:380547-380566 | MS.gene74428:intron | 35.0% | |
| AGTTCATTAGGTGAAACAGA+AGG | - | chr6.4:381588-381607 | None:intergenic | 35.0% | |
| ATTCTCAAAGTAACCAAGAC+TGG | - | chr6.4:380837-380856 | None:intergenic | 35.0% | |
| CAACTACTATAACCTTCTGA+TGG | - | chr6.4:378707-378726 | None:intergenic | 35.0% | |
| CAGAAGATCCTGTAATTAAC+GGG | - | chr6.4:381260-381279 | None:intergenic | 35.0% | |
| CATGAAAAACTTAGTGAAGG+AGG | + | chr6.4:381375-381394 | MS.gene74428:CDS | 35.0% | |
| CTAGTTAGAAACGGGAATAA+TGG | - | chr6.4:381108-381127 | None:intergenic | 35.0% | |
| CTCTTACTCCAACCATTAAT+CGG | + | chr6.4:378393-378412 | MS.gene74428:CDS | 35.0% | |
| CTGAATGTAATCGTATGTGT+TGG | + | chr6.4:378778-378797 | MS.gene74428:intron | 35.0% | |
| CTTTATCATAGGTAGAACCT+TGG | + | chr6.4:380243-380262 | MS.gene74428:intron | 35.0% | |
| GATTCATACAGTCATTCACA+TGG | + | chr6.4:380057-380076 | MS.gene74428:intron | 35.0% | |
| GCAGAAGATCCTGTAATTAA+CGG | - | chr6.4:381261-381280 | None:intergenic | 35.0% | |
| GGGAATAACATCTATACCTT+CGG | - | chr6.4:381240-381259 | None:intergenic | 35.0% | |
| TAACTCTTCAGGTATGCAAT+AGG | + | chr6.4:381452-381471 | MS.gene74428:intron | 35.0% | |
| TACTATAACCTTCTGATGGA+AGG | - | chr6.4:378703-378722 | None:intergenic | 35.0% | |
| TCAAAGATTTACCTGTTTCC+AGG | - | chr6.4:379907-379926 | None:intergenic | 35.0% | |
| TCATAAAGATCCCACTACAA+AGG | + | chr6.4:379448-379467 | MS.gene74428:intron | 35.0% | |
| TCTCCTGTTGTGTTAAAAAC+TGG | - | chr6.4:381009-381028 | None:intergenic | 35.0% | |
| TCTGTTTCACCTAATGAACT+TGG | + | chr6.4:381588-381607 | MS.gene74428:CDS | 35.0% | |
| TTGAATGTAATCACACGTGT+CGG | + | chr6.4:378819-378838 | MS.gene74428:intron | 35.0% | |
| ! | ATGAATCGGCCAATTTTCTT+TGG | - | chr6.4:380044-380063 | None:intergenic | 35.0% |
| ! | ATTTAAAGTCTTGTCAGTGG+TGG | + | chr6.4:379563-379582 | MS.gene74428:intron | 35.0% |
| ! | GAAAACCTAAATCCCCTTTT+TGG | - | chr6.4:380269-380288 | None:intergenic | 35.0% |
| ! | GAGCTTTTGATCAAGCATAA+AGG | + | chr6.4:380974-380993 | MS.gene74428:intron | 35.0% |
| ! | TGGAGTAAGAGATTTTCTTG+CGG | - | chr6.4:378384-378403 | None:intergenic | 35.0% |
| ! | TTGTAGTGGGATCTTTATGA+AGG | - | chr6.4:379448-379467 | None:intergenic | 35.0% |
| !! | AAAAGGGGATTTAGGTTTTC+TGG | + | chr6.4:380269-380288 | MS.gene74428:intron | 35.0% |
| !! | AATCGGTGAAAAAGTGTTGT+TGG | + | chr6.4:378205-378224 | MS.gene74428:CDS | 35.0% |
| !! | GAAAAAGTGTTGTTGGAGAA+AGG | + | chr6.4:378212-378231 | MS.gene74428:CDS | 35.0% |
| !! | GTTGAATACTGACTCAAACA+CGG | + | chr6.4:379276-379295 | MS.gene74428:intron | 35.0% |
| !! | TTGAATACTGACTCAAACAC+GGG | + | chr6.4:379277-379296 | MS.gene74428:intron | 35.0% |
| AAACCTGTGAAGGCTGATAT+GGG | + | chr6.4:379420-379439 | MS.gene74428:intron | 40.0% | |
| ACAGGTAAATCTTTGAGCTG+GGG | + | chr6.4:379911-379930 | MS.gene74428:intron | 40.0% | |
| AGAATTCCCTGCAAGAAATG+AGG | + | chr6.4:381562-381581 | MS.gene74428:CDS | 40.0% | |
| AGACTGACTGAATGAATGGA+AGG | - | chr6.4:378868-378887 | None:intergenic | 40.0% | |
| AGGGTCAAGTTTATCATGAG+AGG | + | chr6.4:380344-380363 | MS.gene74428:intron | 40.0% | |
| AGGTGCAAAAGTTGTGAACT+TGG | + | chr6.4:381408-381427 | MS.gene74428:CDS | 40.0% | |
| CAATGCATCACCGAAAAAAC+AGG | - | chr6.4:378475-378494 | None:intergenic | 40.0% | |
| CTGGTTTCACACTTTCTTTC+GGG | + | chr6.4:379934-379953 | MS.gene74428:intron | 40.0% | |
| GAGCAATGGAACAAGCAATT+TGG | + | chr6.4:381618-381637 | MS.gene74428:CDS | 40.0% | |
| GATTAGACCAGTAACTCTTC+AGG | + | chr6.4:381441-381460 | MS.gene74428:CDS | 40.0% | |
| GGTAGAAGACAGAAAGATCA+AGG | - | chr6.4:380792-380811 | None:intergenic | 40.0% | |
| GTTGTGTTAAAAACTGGCAC+TGG | - | chr6.4:381003-381022 | None:intergenic | 40.0% | |
| TACCTAAACAGTCCACATGA+TGG | + | chr6.4:380808-380827 | MS.gene74428:intron | 40.0% | |
| TAGGCTCATTCGTCAAAAAG+TGG | - | chr6.4:380393-380412 | None:intergenic | 40.0% | |
| TCATAGGTGCCAAGTTCATT+AGG | - | chr6.4:381600-381619 | None:intergenic | 40.0% | |
| TTGACCCTTTGCCAAACAAA+GGG | - | chr6.4:380332-380351 | None:intergenic | 40.0% | |
| TTGCATACCTGAAGAGTTAC+TGG | - | chr6.4:381451-381470 | None:intergenic | 40.0% | |
| TTGCTTGTTCCATTGCTCAT+AGG | - | chr6.4:381616-381635 | None:intergenic | 40.0% | |
| TTGTAGATGTTGACCACGTT+GGG | + | chr6.4:380637-380656 | MS.gene74428:intron | 40.0% | |
| TTTGTAGATGTTGACCACGT+TGG | + | chr6.4:380636-380655 | MS.gene74428:intron | 40.0% | |
| ! | AATCGGCCAATTTTCTTTGG+CGG | - | chr6.4:380041-380060 | None:intergenic | 40.0% |
| ! | CGACTTGACTCTCTTTTGTT+CGG | + | chr6.4:378255-378274 | MS.gene74428:CDS | 40.0% |
| ! | GAGATTTTCTTGCGGTATGA+AGG | - | chr6.4:378376-378395 | None:intergenic | 40.0% |
| ! | GCTGGTTTCACACTTTCTTT+CGG | + | chr6.4:379933-379952 | MS.gene74428:intron | 40.0% |
| ! | GTGCCAGTTTTTAACACAAC+AGG | + | chr6.4:381003-381022 | MS.gene74428:intron | 40.0% |
| ! | TACCATCATGTGGACTGTTT+AGG | - | chr6.4:380813-380832 | None:intergenic | 40.0% |
| ! | TGACGAGGCATTAACATTAG+AGG | - | chr6.4:380894-380913 | None:intergenic | 40.0% |
| ! | TTTCACACTTTCTTTCGGGT+GGG | + | chr6.4:379938-379957 | MS.gene74428:intron | 40.0% |
| !! | GTATTTTAGAGGCAAGAGCT+TGG | + | chr6.4:381138-381157 | MS.gene74428:intron | 40.0% |
| !! | TCAGACCAAAGGCATTTCTA+GGG | - | chr6.4:379308-379327 | None:intergenic | 40.0% |
| !! | TTCAGACCAAAGGCATTTCT+AGG | - | chr6.4:379309-379328 | None:intergenic | 40.0% |
| AACTTGGCACCTATGAGCAA+TGG | + | chr6.4:381604-381623 | MS.gene74428:CDS | 45.0% | |
| AAGAGTAATCATCGGCATCG+CGG | - | chr6.4:378293-378312 | None:intergenic | 45.0% | |
| AAGATGCAATTCACCCAACG+TGG | - | chr6.4:380653-380672 | None:intergenic | 45.0% | |
| AATGAAGCATGGACACACGT+CGG | + | chr6.4:379625-379644 | MS.gene74428:intron | 45.0% | |
| AGAAACAACGCAACAGCAAG+AGG | - | chr6.4:380922-380941 | None:intergenic | 45.0% | |
| AGAAGGCCTCATTTCTTGCA+GGG | - | chr6.4:381571-381590 | None:intergenic | 45.0% | |
| AGCTCGGATTCCTTTGTAGT+GGG | - | chr6.4:379461-379480 | None:intergenic | 45.0% | |
| AGGTAGAACCTTGGCCAAAA+AGG | + | chr6.4:380252-380271 | MS.gene74428:intron | 45.0% | |
| AGTGAACGTAGTGCAACACA+TGG | + | chr6.4:379804-379823 | MS.gene74428:intron | 45.0% | |
| CAAACCTGTGAAGGCTGATA+TGG | + | chr6.4:379419-379438 | MS.gene74428:intron | 45.0% | |
| CAACTTGAGTGCCCTTTGTT+TGG | + | chr6.4:380318-380337 | MS.gene74428:intron | 45.0% | |
| CACATGATGGTAACCAGTCT+TGG | + | chr6.4:380821-380840 | MS.gene74428:intron | 45.0% | |
| CACTTCAGAGTTCAGACCAA+AGG | - | chr6.4:379319-379338 | None:intergenic | 45.0% | |
| CAGCAAGAGGAAAATTGACG+AGG | - | chr6.4:380909-380928 | None:intergenic | 45.0% | |
| CATCGCGGAAGAGTAATCAT+CGG | - | chr6.4:378301-378320 | None:intergenic | 45.0% | |
| CATGGCAGTTAAGAACAGCT+CGG | - | chr6.4:379477-379496 | None:intergenic | 45.0% | |
| CTTGACCCTTTGCCAAACAA+AGG | - | chr6.4:380333-380352 | None:intergenic | 45.0% | |
| CTTGGCCAAAAAGGGGATTT+AGG | + | chr6.4:380261-380280 | MS.gene74428:intron | 45.0% | |
| GGAGCAAACGTAATTACGTG+AGG | + | chr6.4:380365-380384 | MS.gene74428:intron | 45.0% | |
| GGCTAGAAAATGGGAGTTGA+AGG | + | chr6.4:380523-380542 | MS.gene74428:intron | 45.0% | |
| GGTAGAACCTTGGCCAAAAA+GGG | + | chr6.4:380253-380272 | MS.gene74428:intron | 45.0% | |
| GTAGAACCTTGGCCAAAAAG+GGG | + | chr6.4:380254-380273 | MS.gene74428:intron | 45.0% | |
| GTTTCACACTTTCTTTCGGG+TGG | + | chr6.4:379937-379956 | MS.gene74428:intron | 45.0% | |
| TAACTGCCATGATGCTTCTC+AGG | + | chr6.4:379486-379505 | MS.gene74428:intron | 45.0% | |
| TAGTTCGGGTCAATGAAGCA+TGG | + | chr6.4:379614-379633 | MS.gene74428:intron | 45.0% | |
| TGGATTGAGACGATGTGGAT+GGG | + | chr6.4:379824-379843 | MS.gene74428:intron | 45.0% | |
| ! | ACACATGGATTGAGACGATG+TGG | + | chr6.4:379819-379838 | MS.gene74428:intron | 45.0% |
| ! | AGTGCCCTTTGTTTGGCAAA+GGG | + | chr6.4:380325-380344 | MS.gene74428:intron | 45.0% |
| ! | ATGGATTGAGACGATGTGGA+TGG | + | chr6.4:379823-379842 | MS.gene74428:intron | 45.0% |
| ! | CAAGACTGGTTACCATCATG+TGG | - | chr6.4:380823-380842 | None:intergenic | 45.0% |
| ! | TGAATGGAAGGTGTGTCTGA+TGG | - | chr6.4:378856-378875 | None:intergenic | 45.0% |
| !! | ATTCCACCTGAGAAGCATCA+TGG | - | chr6.4:379495-379514 | None:intergenic | 45.0% |
| !! | CGTGGCCTTTTAGAGAATGA+TGG | + | chr6.4:381167-381186 | MS.gene74428:intron | 45.0% |
| !! | CTAAATCCCCTTTTTGGCCA+AGG | - | chr6.4:380263-380282 | None:intergenic | 45.0% |
| AATCTGCAGAAATGCAGGCC+TGG | + | chr6.4:379886-379905 | MS.gene74428:intron | 50.0% | |
| ACATGTGTGGAGCCTCTTTC+GGG | + | chr6.4:379974-379993 | MS.gene74428:intron | 50.0% | |
| AGAAATGCAGGCCTGGAAAC+AGG | + | chr6.4:379893-379912 | MS.gene74428:intron | 50.0% | |
| AGGCCTGCATTTCTGCAGAT+TGG | - | chr6.4:379887-379906 | None:intergenic | 50.0% | |
| ATCAACACGAGACACGACAC+TGG | + | chr6.4:378591-378610 | MS.gene74428:intron | 50.0% | |
| CAGAAGGCCTCATTTCTTGC+AGG | - | chr6.4:381572-381591 | None:intergenic | 50.0% | |
| CAGACACACCTTCCATCAGA+AGG | + | chr6.4:378692-378711 | MS.gene74428:intron | 50.0% | |
| CAGCTCGGATTCCTTTGTAG+TGG | - | chr6.4:379462-379481 | None:intergenic | 50.0% | |
| CCAGTGCCGCCAAAGAAAAT+TGG | + | chr6.4:380032-380051 | MS.gene74428:intron | 50.0% | |
| CGTGTTCGTGCTTCATGACT+GGG | + | chr6.4:379657-379676 | MS.gene74428:intron | 50.0% | |
| CTTCATCGATATCGGCATCG+CGG | - | chr6.4:378316-378335 | None:intergenic | 50.0% | |
| CTTGATCAAAAGCTCGGCTG+AGG | - | chr6.4:380969-380988 | None:intergenic | 50.0% | |
| GAACCCATATCAGCCTTCAC+AGG | - | chr6.4:379426-379445 | None:intergenic | 50.0% | |
| GACATGTGTGGAGCCTCTTT+CGG | + | chr6.4:379973-379992 | MS.gene74428:intron | 50.0% | |
| GCAAGAGCTTGGATTGTACG+TGG | + | chr6.4:381149-381168 | MS.gene74428:intron | 50.0% | |
| GCTCGGCTGAGGAAATAGAT+AGG | - | chr6.4:380958-380977 | None:intergenic | 50.0% | |
| GGCCTGCATTTCTGCAGATT+GGG | - | chr6.4:379886-379905 | None:intergenic | 50.0% | |
| GGTCCTTGCGACTAACAGAA+CGG | + | chr6.4:380078-380097 | MS.gene74428:intron | 50.0% | |
| GTAAATCTTTGAGCTGGGGC+TGG | + | chr6.4:379915-379934 | MS.gene74428:intron | 50.0% | |
| GTCCTTGCGACTAACAGAAC+GGG | + | chr6.4:380079-380098 | MS.gene74428:intron | 50.0% | |
| GTCTTGTCAGTGGTGGCATT+TGG | + | chr6.4:379570-379589 | MS.gene74428:intron | 50.0% | |
| GTGAAGGAGGCGATAAGACA+AGG | + | chr6.4:381388-381407 | MS.gene74428:CDS | 50.0% | |
| TCAGGCCCTAGAAATGCCTT+TGG | + | chr6.4:379300-379319 | MS.gene74428:intron | 50.0% | |
| TCCTTGCGACTAACAGAACG+GGG | + | chr6.4:380080-380099 | MS.gene74428:intron | 50.0% | |
| TCGTGTTCGTGCTTCATGAC+TGG | + | chr6.4:379656-379675 | MS.gene74428:intron | 50.0% | |
| ! | CCAATTTTCTTTGGCGGCAC+TGG | - | chr6.4:380035-380054 | None:intergenic | 50.0% |
| ! | GAGTGCCCTTTGTTTGGCAA+AGG | + | chr6.4:380324-380343 | MS.gene74428:intron | 50.0% |
| ! | TGGAAGGTGTGTCTGATGGA+AGG | - | chr6.4:378852-378871 | None:intergenic | 50.0% |
| ! | TTTCTTTCGGGTGGGTGTGA+GGG | + | chr6.4:379946-379965 | MS.gene74428:intron | 50.0% |
| !! | TACTGACTCAAACACGGGTC+AGG | + | chr6.4:379282-379301 | MS.gene74428:intron | 50.0% |
| AGTAATCATCGGCATCGCGG+TGG | - | chr6.4:378290-378309 | None:intergenic | 55.0% | |
| ATGGGCCCATGCTAAGTGCT+GGG | + | chr6.4:379842-379861 | MS.gene74428:intron | 55.0% | |
| ATTTCTGCAGATTGGGCCCG+GGG | - | chr6.4:379879-379898 | None:intergenic | 55.0% | |
| CATTTCTGCAGATTGGGCCC+GGG | - | chr6.4:379880-379899 | None:intergenic | 55.0% | |
| CTGAGCCCAGCACTTAGCAT+GGG | - | chr6.4:379850-379869 | None:intergenic | 55.0% | |
| CTGCCATGATGCTTCTCAGG+TGG | + | chr6.4:379489-379508 | MS.gene74428:intron | 55.0% | |
| GCATTTCTGCAGATTGGGCC+CGG | - | chr6.4:379881-379900 | None:intergenic | 55.0% | |
| GGCCCAATCTGCAGAAATGC+AGG | + | chr6.4:379881-379900 | MS.gene74428:intron | 55.0% | |
| TGTGAGGGCTGAGACATGTG+TGG | + | chr6.4:379961-379980 | MS.gene74428:intron | 55.0% | |
| ! | CTTTCTTTCGGGTGGGTGTG+AGG | + | chr6.4:379945-379964 | MS.gene74428:intron | 55.0% |
| !! | TTCTTTGGCGGCACTGGCAA+AGG | - | chr6.4:380029-380048 | None:intergenic | 55.0% |
| CCTGAGCCCAGCACTTAGCA+TGG | - | chr6.4:379851-379870 | None:intergenic | 60.0% | |
| GATGGGCCCATGCTAAGTGC+TGG | + | chr6.4:379841-379860 | MS.gene74428:intron | 60.0% | |
| GCCCCGTTCTGTTAGTCGCA+AGG | - | chr6.4:380084-380103 | None:intergenic | 60.0% | |
| TGTGTGGAGCCTCTTTCGGG+TGG | + | chr6.4:379977-379996 | MS.gene74428:intron | 60.0% | |
| ! | CCTCTTTCGGGTGGGTGTGA+GGG | + | chr6.4:379986-380005 | MS.gene74428:intron | 60.0% |
| ! | GTGTGGAGCCTCTTTCGGGT+GGG | + | chr6.4:379978-379997 | MS.gene74428:intron | 60.0% |
| !! | CCATGCTAAGTGCTGGGCTC+AGG | + | chr6.4:379848-379867 | MS.gene74428:intron | 60.0% |
| CCCTCACACCCACCCGAAAG+AGG | - | chr6.4:379949-379968 | None:intergenic | 65.0% | |
| CTGGGCTCAGGAAAGTCCCC+GGG | + | chr6.4:379860-379879 | MS.gene74428:intron | 65.0% | |
| GCTGGGCTCAGGAAAGTCCC+CGG | + | chr6.4:379859-379878 | MS.gene74428:intron | 65.0% | |
| ! | GCCTCTTTCGGGTGGGTGTG+AGG | + | chr6.4:379985-380004 | MS.gene74428:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 378198 | 381656 | 378198 | ID=MS.gene74428 |
| chr6.4 | mRNA | 378198 | 381656 | 378198 | ID=MS.gene74428.t1;Parent=MS.gene74428 |
| chr6.4 | exon | 378198 | 378414 | 378198 | ID=MS.gene74428.t1.exon1;Parent=MS.gene74428.t1 |
| chr6.4 | CDS | 378198 | 378414 | 378198 | ID=cds.MS.gene74428.t1;Parent=MS.gene74428.t1 |
| chr6.4 | exon | 381359 | 381462 | 381359 | ID=MS.gene74428.t1.exon2;Parent=MS.gene74428.t1 |
| chr6.4 | CDS | 381359 | 381462 | 381359 | ID=cds.MS.gene74428.t1;Parent=MS.gene74428.t1 |
| chr6.4 | exon | 381555 | 381656 | 381555 | ID=MS.gene74428.t1.exon3;Parent=MS.gene74428.t1 |
| chr6.4 | CDS | 381555 | 381656 | 381555 | ID=cds.MS.gene74428.t1;Parent=MS.gene74428.t1 |
| Gene Sequence |
| Protein sequence |
